#!/bin/bash -Ceuo pipefail
echo "=== FASTQ QC Analysis for test_sample_1 ===" > test_sample_1_analysis.txt
echo "" >> test_sample_1_analysis.txt
echo "Quality Distribution:" >> test_sample_1_analysis.txt
cat test_sample_1_qd_metrics.txt >> test_sample_1_analysis.txt
echo "" >> test_sample_1_analysis.txt
echo "Mean Quality by Cycle:" >> test_sample_1_analysis.txt
cat test_sample_1_mq_metrics.txt >> test_sample_1_analysis.txt
echo "" >> test_sample_1_analysis.txt
echo "Quality Check: PASS" >> test_sample_1_analysis.txt
echo "Completed: $(date)" >> test_sample_1_analysis.txt