.command.sh - Workdir - SUMMARIZE_SAMPLE (test_sample_1)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/68e56c364b9f4ad2971665df34f6a7/.command.sh
Size: 438 bytes
Task: SUMMARIZE_SAMPLE (test_sample_1)
Attempt

Content

#!/bin/bash -Ceuo pipefail
validation_passed=$(cat validation_status.txt)

echo "Sample: test_sample_1" > test_sample_1_result.txt
echo "Fastq1: SRR7890919_WES_HCC1395BL-EA_normal_1.fastq.gz" >> test_sample_1_result.txt
echo "Fastq2: SRR7890919_WES_HCC1395BL-EA_normal_2.fastq.gz" >> test_sample_1_result.txt
echo "Validation passed: ${validation_passed}" >> test_sample_1_result.txt
echo "Processed: $(date)" >> test_sample_1_result.txt