succeeded NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed) 8s 4s - - 5.4 MB 102% 4.6 MB 4.6 MB 0 bytes 4.6 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity;null) 4s 2s - - 6.1 MB 106% 6.0 MB 1.7 MB 0 bytes 1.7 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr14_64122012-64122133;null) 7s 5s - - 6.1 MB 101% 1.5 MB 401.1 KB 0 bytes 408.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_69091-70008;null) 7s 6s - - 6.1 MB 113% 1.6 MB 442.7 KB 0 bytes 448.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr19_47340800-47341813;null) 7s 5s - - 3.3 MB 97% 398.1 KB 84.1 KB 0 bytes 88.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr4_30730753-30730788;null) 7s 5s - - 6.4 MB 54% 1.4 MB 422.1 KB 0 bytes 428.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr8_93795409-93795507;null) 7s 6s - - 6.2 MB 83% 1.6 MB 432.2 KB 0 bytes 440.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_ANTITARGET (intervals) 26s 17s 7s 2s 260.8 MB 398% 117.1 MB 1.4 MB 0 bytes 1.4 MB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_REFERENCE (Homo_sapiens_assembly38.fasta) 1m 21s 18s 54s 9s 278.8 MB 143% 5.9 GB 10.5 MB 0 bytes 10.5 MB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 9s 8s 0s 0s 0 bytes 177% 126.1 KB 49.5 KB 0 bytes 52.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 39s 16s 0s 22s 15.5 MB 98% 28.0 MB 207.7 KB 0 bytes 152.0 KB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_1029_3TP) 14m 32s 13s 12m 21s 1m 57s 880.2 MB 223% 327.1 GB 301.7 GB 0 bytes 20.7 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_1029_5VB) 15m 17s 1m 26s 12m 39s 1m 11s 865.3 MB 219% 303.7 GB 280.1 GB 0 bytes 19.2 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_1029_B59) 19m 31s 2m 37s 15m 48s 1m 5s 922.9 MB 219% 406.2 GB 375.1 GB 0 bytes 25.7 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_1029_BC1I) 23m 30s 15s 20m 51s 2m 23s 3.8 GB 217% 482.1 GB 446.2 GB 3.0 MB 30.6 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_1029_BE58) 8m 22s 1m 15s 6m 21s 45s 5.9 GB 230% 147.8 GB 134.2 GB 0 bytes 9.2 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_1029_BIBA) 25m 2s 3m 43s 20m 4s 1m 14s 3.7 GB 217% 525.4 GB 487.4 GB 0 bytes 33.4 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_1029_BOQV) 20m 1s 18s 18m 30s 1m 12s 926.4 MB 220% 446.3 GB 413.6 GB 13.9 MB 28.3 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_1029_BOYY) 18m 20s 34s 15m 40s 2m 5s 908.6 MB 215% 386.5 GB 357.6 GB 0 bytes 24.5 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_1029_BZM) 20m 25s 1m 37s 16m 32s 2m 15s 912.0 MB 232% 373.5 GB 344.2 GB 396.0 KB 23.6 GB 1
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