NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:MUTECT2 (NA12878_c_0002_gDNA_0005_B23KYWJLT4_1;chr4_30730753-30730788) - autorun-sarek-cgp_atx_experiments-chunk1 - Workflow Tracker

Runs
autorun-sare..ents-chunk1
Tasks
MUTECT2 (NA12878_c_0002_gDNA_0005_B23KYWJLT4_1;chr4_30730753-30730788)

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Task Info

Status: aborted
Hash: 0a3ca5ee5c00
Process: NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:MUTECT2
Tag: NA12878_c_0002_gDNA_0005_B23KYWJLT4_1;chr4_30730753-30730788
Attempts: 3

Attempt 3

Execution

Status: aborted
Hash: fc/52fe11
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/52fe1141880a5a3272128e8882c76a
Native ID: nf-fc52fe1141880a5a3272128e8882c76a-9355d

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 24.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -

Runtime

Submitted: Mar 02, 2026 3:05:01 PM
Completed: Mar 02, 2026 3:05:04 PM
Total Duration: -

Phases

Queue: 2408h 40m
Execution: -
Stage/Unstage: -

Attempt 2

Execution

Status: failed
Hash: bf/863f16
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/863f1688067b2f2c77b3b43e490e21
Native ID: nf-bf863f1688067b2f2c77b3b43e490e21-3812f

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 16.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-012418b67a7b0aace ( on-demand)

Runtime

Submitted: Mar 02, 2026 3:04:00 PM
Completed: Mar 02, 2026 3:04:34 PM
Total Duration: 33s

Phases

Queue: 25s
Execution: 8s
Stage/Unstage: 0s

Attempt 1

Execution

Status: failed
Hash: 38/8287aa
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/8287aad0db95e974256bf71e219d36
Native ID: nf-388287aad0db95e974256bf71e219d36-067b2

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 8.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0d187c71d45168f2a ( on-demand)

Runtime

Submitted: Mar 02, 2026 3:03:00 PM
Completed: Mar 02, 2026 3:03:56 PM
Total Duration: 55s

Phases

Queue: 47s
Execution: 8s
Stage/Unstage: 0s