NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:MUTECT2 (NA12878_c_0002_gDNA_0005_B23KYWJLT4_1;chr8_93795409-93795507) - autorun-sarek-cgp_atx_experiments-chunk1 - Workflow Tracker

Runs
autorun-sare..ents-chunk1
Tasks
MUTECT2 (NA12878_c_0002_gDNA_0005_B23KYWJLT4_1;chr8_93795409-93795507)

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Task Info

Status: aborted
Hash: ef9b39fa7eeb
Process: NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:MUTECT2
Tag: NA12878_c_0002_gDNA_0005_B23KYWJLT4_1;chr8_93795409-93795507
Attempts: 3

Attempt 3

Execution

Status: aborted
Hash: 29/75f00c
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/75f00ceb71f8ace0b6305770c2717e
Native ID: nf-2975f00ceb71f8ace0b6305770c2717e-911e6

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 24.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -

Runtime

Submitted: Mar 02, 2026 3:05:02 PM
Completed: Mar 02, 2026 3:05:05 PM
Total Duration: -

Phases

Queue: 2403h 3m
Execution: -
Stage/Unstage: -

Attempt 2

Execution

Status: failed
Hash: 44/0a8a24
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/0a8a24d17b843521796fefca3a4684
Native ID: nf-440a8a24d17b843521796fefca3a4684-f912b

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 16.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0ca8d072eed2b9827 ( on-demand)

Runtime

Submitted: Mar 02, 2026 3:04:01 PM
Completed: Mar 02, 2026 3:04:22 PM
Total Duration: 20s

Phases

Queue: 12s
Execution: 8s
Stage/Unstage: 0s

Attempt 1

Execution

Status: failed
Hash: 9d/64f4a1
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/64f4a1464ff34f51d3cf0ebd30af18
Native ID: nf-9d64f4a1464ff34f51d3cf0ebd30af18-4bea4

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 8.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0d187c71d45168f2a ( on-demand)

Runtime

Submitted: Mar 02, 2026 3:03:00 PM
Completed: Mar 02, 2026 3:03:54 PM
Total Duration: 53s

Phases

Queue: 43s
Execution: 10s
Stage/Unstage: 0s