NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:MUTECT2 (NA12878_c_0002_gDNA_0003_B23KYWJLT4_1;chr4_30730753-30730788) - autorun-sarek-cgp_atx_experiments-chunk2 - Workflow Tracker

Runs
autorun-sare..ents-chunk2
Tasks
MUTECT2 (NA12878_c_0002_gDNA_0003_B23KYWJLT4_1;chr4_30730753-30730788)

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Task Info

Status: aborted
Hash: 0a3ca5ee5c00
Process: NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:MUTECT2
Tag: NA12878_c_0002_gDNA_0003_B23KYWJLT4_1;chr4_30730753-30730788
Attempts: 2

Attempt 2

Execution

Status: aborted
Hash: 9e/885221
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/88522128dd48ecd974f9a2514b6246
Native ID: nf-9e88522128dd48ecd974f9a2514b6246-3f1b1

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 16.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -

Runtime

Submitted: Mar 02, 2026 3:04:57 PM
Completed: Mar 02, 2026 3:05:02 PM
Total Duration: -

Phases

Queue: 2396h 27m
Execution: -
Stage/Unstage: -

Attempt 1

Execution

Status: failed
Hash: e5/84e937
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/84e9374c2e41737e2beeef5fcce5aa
Native ID: nf-e584e9374c2e41737e2beeef5fcce5aa-6ef57

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 8.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0ca8d072eed2b9827 ( on-demand)

Runtime

Submitted: Mar 02, 2026 3:03:02 PM
Completed: Mar 02, 2026 3:04:08 PM
Total Duration: 1m 5s

Phases

Queue: 56s
Execution: 9s
Stage/Unstage: 0s