NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (NA12878_c_0002_gDNA_0003_B23KYWJLT4_1;SNP_GRCh38_hg38_wChr) - autorun-sarek-cgp_atx_experiments-chunk2 - Workflow Tracker

Runs
autorun-sare..ents-chunk2
Tasks
BCFTOOLS_MPILEUP (NA12878_c_0002_gDNA_0003_B23KYWJLT4_1;SNP_GRCh38_hg38_wChr)

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Task Info

Status: failed
Hash: 7ff086a24084
Process: NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP
Tag: NA12878_c_0002_gDNA_0003_B23KYWJLT4_1;SNP_GRCh38_hg38_wChr
Attempts: 3

Attempt 3

Execution

Status: failed
Hash: bb/c2164f
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/c2164f4a55e8528941f07be5761a41
Native ID: nf-bbc2164f4a55e8528941f07be5761a41-0259d

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 6.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0d187c71d45168f2a ( on-demand)

Runtime

Submitted: Mar 02, 2026 3:03:59 PM
Completed: Mar 02, 2026 3:04:45 PM
Total Duration: 45s

Phases

Queue: 37s
Execution: 8s
Stage/Unstage: 0s

Attempt 2

Execution

Status: failed
Hash: 65/3a1958
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/3a195869f3fd39d38e7d7bb0a5b50a
Native ID: nf-653a195869f3fd39d38e7d7bb0a5b50a-c1a61

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 4.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0f88ba919170509b8 ( on-demand)

Runtime

Submitted: Mar 02, 2026 3:02:59 PM
Completed: Mar 02, 2026 3:03:22 PM
Total Duration: 22s

Phases

Queue: 13s
Execution: 9s
Stage/Unstage: 0s

Attempt 1

Execution

Status: failed
Hash: d2/d68118
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/d68118598596b0e3599881f28b2e42
Native ID: nf-d2d68118598596b0e3599881f28b2e42-98006

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 2.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-01f0585d611a38266 ( spot)

Runtime

Submitted: Mar 02, 2026 3:02:14 PM
Completed: Mar 02, 2026 3:02:27 PM
Total Duration: 12s

Phases

Queue: 4s
Execution: 8s
Stage/Unstage: 0s