NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (NA12878_c_0002_gDNA_0003_B23KYWJLT4_1) - autorun-sarek-cgp_atx_experiments-chunk2 - Workflow Tracker

Runs
autorun-sare..ents-chunk2
Tasks
CNVKIT_BATCH (NA12878_c_0002_gDNA_0003_B23KYWJLT4_1)

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Task Info

Status: aborted
Hash: 84c0abd8e22a
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH
Tag: NA12878_c_0002_gDNA_0003_B23KYWJLT4_1
Attempts: 2

Attempt 2

Execution

Status: aborted
Hash: f4/1333df
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/mulled-v2-780d630a9bb6a0ff2e7b6f730906fd703e40e98f:c94363856059151a2974dc501fb07a0360cc60a3-0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/1333df077339a669ba7fd17396c965
Native ID: nf-f41333df077339a669ba7fd17396c965-ef32b

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 32
Memory (peak / alloc): - / 128.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -

Runtime

Submitted: Mar 02, 2026 3:04:57 PM
Completed: Mar 02, 2026 3:05:02 PM
Total Duration: -

Phases

Queue: 2404h 36m
Execution: -
Stage/Unstage: -

Attempt 1

Execution

Status: failed
Hash: b9/ae4eed
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/mulled-v2-780d630a9bb6a0ff2e7b6f730906fd703e40e98f:c94363856059151a2974dc501fb07a0360cc60a3-0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/ae4eed93b5ad783fd5b422292cf1fc
Native ID: nf-b9ae4eed93b5ad783fd5b422292cf1fc-0459e

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 16
Memory (peak / alloc): - / 64.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-038aa5d7ea1697978 ( on-demand)

Runtime

Submitted: Mar 02, 2026 3:02:15 PM
Completed: Mar 02, 2026 3:04:15 PM
Total Duration: 1m 59s

Phases

Queue: 1m 51s
Execution: 8s
Stage/Unstage: 0s