NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_HAPLOTYPECALLER:GATK4_HAPLOTYPECALLER (NA12878_c_0002_gDNA_0003_B23KYWJLT4_1;chr14_64122012-64122133) - autorun-sarek-cgp_atx_experiments-chunk2 - Workflow Tracker

Runs
autorun-sare..ents-chunk2
Tasks
GATK4_HAPLOTYPECALLER (NA12878_c_0002_gDNA_0003_B23KYWJLT4_1;chr14_64122012-64122133)

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Task Info

Status: new
Hash: bf2ac869a02f
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_HAPLOTYPECALLER:GATK4_HAPLOTYPECALLER
Tag: NA12878_c_0002_gDNA_0003_B23KYWJLT4_1;chr14_64122012-64122133
Attempts: 3

Attempt 3

Execution

Status: new
Hash: 01/e3ced7
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/e3ced7b9426430e3f8f1ab367f83b0

View Workdir

Resources

CPU (used / alloc): - / 12
Memory (peak / alloc): - / 48.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -

Runtime

Submitted: -
Completed: -
Total Duration: -

Phases

Queue: -
Execution: -
Stage/Unstage: -

Attempt 2

Execution

Status: aborted
Hash: 57/33100e
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/33100e6b936c2399c045087fd032c9
Native ID: nf-5733100e6b936c2399c045087fd032c9-ce21c

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 8
Memory (peak / alloc): - / 32.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -

Runtime

Submitted: Mar 02, 2026 3:04:00 PM
Completed: Mar 02, 2026 3:05:00 PM
Total Duration: -

Phases

Queue: 2404h 36m
Execution: -
Stage/Unstage: -

Attempt 1

Execution

Status: failed
Hash: 7d/8a39fb
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/8a39fbc6e72e2fb27c2e27b77e4bab
Native ID: nf-7d8a39fbc6e72e2fb27c2e27b77e4bab-68207

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 16.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-016d287992b7c5829 ( spot)

Runtime

Submitted: Mar 02, 2026 3:03:00 PM
Completed: Mar 02, 2026 3:03:24 PM
Total Duration: 23s

Phases

Queue: 15s
Execution: 8s
Stage/Unstage: 0s