NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:MUTECT2 (NA12878_c_0002_gDNA_0004_B23KYWJLT4_1;chr14_64122012-64122133) - autorun-sarek-cgp_atx_experiments-chunk4 - Workflow Tracker

Runs
autorun-sare..ents-chunk4
Tasks
MUTECT2 (NA12878_c_0002_gDNA_0004_B23KYWJLT4_1;chr14_64122012-64122133)

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Task Info

Status: aborted
Hash: 0483eef601fa
Process: NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:MUTECT2
Tag: NA12878_c_0002_gDNA_0004_B23KYWJLT4_1;chr14_64122012-64122133
Attempts: 3

Attempt 3

Execution

Status: aborted
Hash: b6/c41706
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/c41706d1ea2c0adbd57aebd13826a6
Native ID: nf-b6c41706d1ea2c0adbd57aebd13826a6-4de60

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 24.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -

Runtime

Submitted: Mar 02, 2026 3:04:58 PM
Completed: Mar 02, 2026 3:05:03 PM
Total Duration: -

Phases

Queue: 2398h 7m
Execution: -
Stage/Unstage: -

Attempt 2

Execution

Status: failed
Hash: 00/4e57ee
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/4e57eedee71ff06a6e1e91718b1c98
Native ID: nf-004e57eedee71ff06a6e1e91718b1c98-110ac

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 16.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0ca8d072eed2b9827 ( on-demand)

Runtime

Submitted: Mar 02, 2026 3:03:59 PM
Completed: Mar 02, 2026 3:04:12 PM
Total Duration: 12s

Phases

Queue: 4s
Execution: 8s
Stage/Unstage: 0s

Attempt 1

Execution

Status: failed
Hash: 98/8ff449
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/8ff4490f768c36fda135e3238ca69c
Native ID: nf-988ff4490f768c36fda135e3238ca69c-865a4

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 8.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0d7b00bbb9c0fa962 ( on-demand)

Runtime

Submitted: Mar 02, 2026 3:02:58 PM
Completed: Mar 02, 2026 3:03:41 PM
Total Duration: 42s

Phases

Queue: 34s
Execution: 8s
Stage/Unstage: 0s