NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:MUTECT2 (NA12878_c_0002_gDNA_0004_B23KYWJLT4_1;chr4_30730753-30730788) - autorun-sarek-cgp_atx_experiments-chunk4 - Workflow Tracker

Runs
autorun-sare..ents-chunk4
Tasks
MUTECT2 (NA12878_c_0002_gDNA_0004_B23KYWJLT4_1;chr4_30730753-30730788)

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Task Info

Status: aborted
Hash: 0a3ca5ee5c00
Process: NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:MUTECT2
Tag: NA12878_c_0002_gDNA_0004_B23KYWJLT4_1;chr4_30730753-30730788
Attempts: 3

Attempt 3

Execution

Status: aborted
Hash: 7b/d8cb5b
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/d8cb5b6684ab2d674a26cb7015fb45
Native ID: nf-7bd8cb5b6684ab2d674a26cb7015fb45-f84e2

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 24.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -

Runtime

Submitted: Mar 02, 2026 3:04:59 PM
Completed: Mar 02, 2026 3:05:03 PM
Total Duration: -

Phases

Queue: 2398h 5m
Execution: -
Stage/Unstage: -

Attempt 2

Execution

Status: failed
Hash: ef/d8b432
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/d8b4329c398259b21fbce1c8781b07
Native ID: nf-efd8b4329c398259b21fbce1c8781b07-9663b

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 16.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0ca8d072eed2b9827 ( on-demand)

Runtime

Submitted: Mar 02, 2026 3:04:00 PM
Completed: Mar 02, 2026 3:04:37 PM
Total Duration: 36s

Phases

Queue: 27s
Execution: 9s
Stage/Unstage: 0s

Attempt 1

Execution

Status: failed
Hash: fa/f37a18
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/f37a180539c7d972bab11776ed8d4f
Native ID: nf-faf37a180539c7d972bab11776ed8d4f-4405d

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 8.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0f88ba919170509b8 ( on-demand)

Runtime

Submitted: Mar 02, 2026 3:02:58 PM
Completed: Mar 02, 2026 3:03:31 PM
Total Duration: 32s

Phases

Queue: 23s
Execution: 9s
Stage/Unstage: 0s