NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:MUTECT2 (NA12878_c_0002_gDNA_0004_B23KYWJLT4_1;chr8_93795409-93795507) - autorun-sarek-cgp_atx_experiments-chunk4 - Workflow Tracker

Runs
autorun-sare..ents-chunk4
Tasks
MUTECT2 (NA12878_c_0002_gDNA_0004_B23KYWJLT4_1;chr8_93795409-93795507)

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Task Info

Status: aborted
Hash: ef9b39fa7eeb
Process: NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:MUTECT2
Tag: NA12878_c_0002_gDNA_0004_B23KYWJLT4_1;chr8_93795409-93795507
Attempts: 2

Attempt 2

Execution

Status: aborted
Hash: be/9eb26c
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/9eb26c651126bd493b89497ac51cb7
Native ID: nf-be9eb26c651126bd493b89497ac51cb7-8b515

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 16.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -

Runtime

Submitted: Mar 02, 2026 3:04:55 PM
Completed: Mar 02, 2026 3:05:03 PM
Total Duration: -

Phases

Queue: 2396h 27m
Execution: -
Stage/Unstage: -

Attempt 1

Execution

Status: failed
Hash: 50/d2ca23
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/d2ca23b5052a37800dbdc62e759e6e
Native ID: nf-50d2ca23b5052a37800dbdc62e759e6e-3f69f

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 8.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0d94305c07c7ec0b3 ( on-demand)

Runtime

Submitted: Mar 02, 2026 3:02:59 PM
Completed: Mar 02, 2026 3:04:11 PM
Total Duration: 1m 11s

Phases

Queue: 1m 3s
Execution: 8s
Stage/Unstage: 0s