NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:MUTECT2 (NA12878_c_0002_gDNA_0004_B23KYWJLT4_1;chr19_47340800-47341813) - autorun-sarek-cgp_atx_experiments-chunk4 - Workflow Tracker

Runs
autorun-sare..ents-chunk4
Tasks
MUTECT2 (NA12878_c_0002_gDNA_0004_B23KYWJLT4_1;chr19_47340800-47341813)

Login

Task Info

Status: aborted
Hash: f827c4090a9e
Process: NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:MUTECT2
Tag: NA12878_c_0002_gDNA_0004_B23KYWJLT4_1;chr19_47340800-47341813
Attempts: 3

Attempt 3

Execution

Status: aborted
Hash: 9c/8c60ba
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/8c60ba008276f643950768bc53e411
Native ID: nf-9c8c60ba008276f643950768bc53e411-795ac

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 24.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -

Runtime

Submitted: Mar 02, 2026 3:04:59 PM
Completed: Mar 02, 2026 3:05:03 PM
Total Duration: -

Phases

Queue: 2398h 37m
Execution: -
Stage/Unstage: -

Attempt 2

Execution

Status: failed
Hash: 0a/661ec6
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/661ec6156274e89f3cba6eb1a73f96
Native ID: nf-0a661ec6156274e89f3cba6eb1a73f96-0f650

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 16.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-038aa5d7ea1697978 ( on-demand)

Runtime

Submitted: Mar 02, 2026 3:04:00 PM
Completed: Mar 02, 2026 3:04:31 PM
Total Duration: 30s

Phases

Queue: 22s
Execution: 8s
Stage/Unstage: 0s

Attempt 1

Execution

Status: failed
Hash: be/13b906
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/13b906eb022aa3288240db07d080bb
Native ID: nf-be13b906eb022aa3288240db07d080bb-4aa0c

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 8.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0f88ba919170509b8 ( on-demand)

Runtime

Submitted: Mar 02, 2026 3:02:58 PM
Completed: Mar 02, 2026 3:03:31 PM
Total Duration: 32s

Phases

Queue: 23s
Execution: 9s
Stage/Unstage: 0s