NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (FFPE_HD789_01_p1_gDNA_0001_A23L3H3LT4_1;SNP_GRCh38_hg38_wChr) - autorun-sarek-cgp_atx_experiments-chunk4 - Workflow Tracker

Runs
autorun-sare..ents-chunk4
Tasks
BCFTOOLS_MPILEUP (FFPE_HD789_01_p1_gDNA_0001_A23L3H3LT4_1;SNP_GRCh38_hg38_wChr)

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Task Info

Status: failed
Hash: fe37491d293e
Process: NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP
Tag: FFPE_HD789_01_p1_gDNA_0001_A23L3H3LT4_1;SNP_GRCh38_hg38_wChr
Attempts: 3

Attempt 3

Execution

Status: failed
Hash: eb/acc320
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/acc32029f72dfe1f47e1fd96963ce5
Native ID: nf-ebacc32029f72dfe1f47e1fd96963ce5-882e0

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 6.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-038aa5d7ea1697978 ( on-demand)

Runtime

Submitted: Mar 02, 2026 3:04:01 PM
Completed: Mar 02, 2026 3:04:26 PM
Total Duration: 24s

Phases

Queue: 16s
Execution: 8s
Stage/Unstage: 0s

Attempt 2

Execution

Status: failed
Hash: 52/93fedf
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/93fedf4d6d76e5c57c1c1881ad1ac1
Native ID: nf-5293fedf4d6d76e5c57c1c1881ad1ac1-3e321

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 4.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0f88ba919170509b8 ( on-demand)

Runtime

Submitted: Mar 02, 2026 3:02:59 PM
Completed: Mar 02, 2026 3:03:22 PM
Total Duration: 22s

Phases

Queue: 13s
Execution: 9s
Stage/Unstage: 0s

Attempt 1

Execution

Status: failed
Hash: 34/b35a11
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/b35a11169299afc5e4e7287547a882
Native ID: nf-34b35a11169299afc5e4e7287547a882-1827f

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 2.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0f4094c51524ff8b0 ( spot)

Runtime

Submitted: Mar 02, 2026 3:02:11 PM
Completed: Mar 02, 2026 3:02:27 PM
Total Duration: 15s

Phases

Queue: 5s
Execution: 10s
Stage/Unstage: 0s