NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (NA12878_c_0002_gDNA_0002_B23KYWJLT4_1;SNP_GRCh38_hg38_wChr) - autorun-sarek-cgp_atx_experiments-chunk5 - Workflow Tracker

Runs
autorun-sare..ents-chunk5
Tasks
BCFTOOLS_MPILEUP (NA12878_c_0002_gDNA_0002_B23KYWJLT4_1;SNP_GRCh38_hg38_wChr)

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Task Info

Status: aborted
Hash: 7ff086a24084
Process: NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP
Tag: NA12878_c_0002_gDNA_0002_B23KYWJLT4_1;SNP_GRCh38_hg38_wChr
Attempts: 3

Attempt 3

Execution

Status: aborted
Hash: 7a/81832f
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/81832fadf0306dab764957fecaa240
Native ID: nf-7a81832fadf0306dab764957fecaa240-8742e

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 6.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -

Runtime

Submitted: Mar 02, 2026 3:04:54 PM
Completed: Mar 02, 2026 3:04:59 PM
Total Duration: -

Phases

Queue: 2402h 20m
Execution: -
Stage/Unstage: -

Attempt 2

Execution

Status: failed
Hash: fb/cf0eae
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/cf0eae0a3a1c5e455232691ef0a1b4
Native ID: nf-fbcf0eae0a3a1c5e455232691ef0a1b4-b1ebe

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 4.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0d7b00bbb9c0fa962 ( on-demand)

Runtime

Submitted: Mar 02, 2026 3:02:55 PM
Completed: Mar 02, 2026 3:04:01 PM
Total Duration: 1m 5s

Phases

Queue: 55s
Execution: 10s
Stage/Unstage: 0s

Attempt 1

Execution

Status: failed
Hash: cf/a81762
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/a81762743e5e1775aa24dc61d3f5ee
Native ID: nf-cfa81762743e5e1775aa24dc61d3f5ee-9cd6e

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 2.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-01277cb072c62d2c5 ( spot)

Runtime

Submitted: Mar 02, 2026 3:02:10 PM
Completed: Mar 02, 2026 3:02:25 PM
Total Duration: 14s

Phases

Queue: 6s
Execution: 8s
Stage/Unstage: 0s