NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (FFPE_HD789_01_p1_gDNA_0001_A23L3H3LT4_1;SNP_GRCh38_hg38_wChr) - autorun-sarek-cgp_atx_experiments-chunk5 - Workflow Tracker

Runs
autorun-sare..ents-chunk5
Tasks
BCFTOOLS_MPILEUP (FFPE_HD789_01_p1_gDNA_0001_A23L3H3LT4_1;SNP_GRCh38_hg38_wChr)

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Task Info

Status: failed
Hash: fe37491d293e
Process: NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP
Tag: FFPE_HD789_01_p1_gDNA_0001_A23L3H3LT4_1;SNP_GRCh38_hg38_wChr
Attempts: 3

Attempt 3

Execution

Status: failed
Hash: 94/726b72
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/726b722ee4e83652d63ecfcc85d416
Native ID: nf-94726b722ee4e83652d63ecfcc85d416-461c2

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 6.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0b54b2186db1c0c77 ( on-demand)

Runtime

Submitted: Mar 02, 2026 3:03:59 PM
Completed: Mar 02, 2026 3:04:33 PM
Total Duration: 33s

Phases

Queue: 24s
Execution: 9s
Stage/Unstage: 0s

Attempt 2

Execution

Status: failed
Hash: 5a/700f00
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/700f002daba74a6e083ba7b98536a4
Native ID: nf-5a700f002daba74a6e083ba7b98536a4-4d36e

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 4.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0ca8d072eed2b9827 ( on-demand)

Runtime

Submitted: Mar 02, 2026 3:02:56 PM
Completed: Mar 02, 2026 3:03:51 PM
Total Duration: 54s

Phases

Queue: 46s
Execution: 8s
Stage/Unstage: 0s

Attempt 1

Execution

Status: failed
Hash: 84/0e49a5
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/0e49a5d31a9aba7b33a5968e67ed1a
Native ID: nf-840e49a5d31a9aba7b33a5968e67ed1a-05bd5

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 2.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-08df2c93b614eef31 ( spot)

Runtime

Submitted: Mar 02, 2026 3:02:11 PM
Completed: Mar 02, 2026 3:02:26 PM
Total Duration: 14s

Phases

Queue: 5s
Execution: 9s
Stage/Unstage: 0s