succeeded NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed) 9s 5s - - 5.3 MB 93% 4.6 MB 4.6 MB 0 bytes 4.6 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity;null) 8s 7s - - 6.2 MB 109% 6.0 MB 1.7 MB 0 bytes 1.7 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr14_64122012-64122133;null) 6s 4s - - 6.2 MB 98% 1.5 MB 401.0 KB 0 bytes 408.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_69091-70008;null) 5s 3s - - 6.2 MB 90% 1.6 MB 442.7 KB 0 bytes 448.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr19_47340800-47341813;null) 5s 3s - - 3.2 MB 133% 391.6 KB 84.0 KB 0 bytes 88.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr4_30730753-30730788;null) 5s 3s - - 6.2 MB 119% 1.4 MB 422.1 KB 0 bytes 428.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr8_93795409-93795507;null) 5s 4s - - 6.0 MB 119% 1.6 MB 432.1 KB 0 bytes 440.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_ANTITARGET (intervals) 26s 17s 8s 1s 259.5 MB 193% 117.1 MB 1.4 MB 0 bytes 1.4 MB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_REFERENCE (Homo_sapiens_assembly38.fasta) 1m 15s 12s 54s 9s 279.6 MB 117% 5.9 GB 10.5 MB 0 bytes 10.5 MB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 4s 3s 0s 0s 0 bytes 120% 90.5 KB 20.1 KB 0 bytes 20.0 KB 1
new NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GETPILEUPSUMMARIES (869_6R-N1-BDNA-1_B23H3TCLT3_1;chr14_64122012-64122133) - - - - - - - - - - 2
aborted NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GETPILEUPSUMMARIES (869_6R-N1-BDNA-1_B23H3TCLT3_1;chr1_69091-70008) - - - - - - - - - - 2
new NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GETPILEUPSUMMARIES (869_6R-N1-BDNA-1_B23H3TCLT3_1;chr19_47340800-47341813) - - - - - - - - - - 3
new NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GETPILEUPSUMMARIES (869_6R-N1-BDNA-1_B23H3TCLT3_1;chr4_30730753-30730788) - - - - - - - - - - 2
new NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GETPILEUPSUMMARIES (869_6R-N1-BDNA-1_B23H3TCLT3_1;chr8_93795409-93795507) - - - - - - - - - - 2
new NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GETPILEUPSUMMARIES (869_BIT-N1-BDNA-1_B23H3TCLT3_1;chr14_64122012-64122133) - - - - - - - - - - 3
aborted NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GETPILEUPSUMMARIES (869_BIT-N1-BDNA-1_B23H3TCLT3_1;chr1_69091-70008) - - - - - - - - - - 2
new NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GETPILEUPSUMMARIES (869_BIT-N1-BDNA-1_B23H3TCLT3_1;chr19_47340800-47341813) - - - - - - - - - - 3
new NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GETPILEUPSUMMARIES (869_BIT-N1-BDNA-1_B23H3TCLT3_1;chr4_30730753-30730788) - - - - - - - - - - 2
new NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GETPILEUPSUMMARIES (869_BIT-N1-BDNA-1_B23H3TCLT3_1;chr8_93795409-93795507) - - - - - - - - - - 2
924 items found |
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