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ae_evidence_all.tsv
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s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/somatic_sv_dev/bam_evidence_all_5c3fedb_ae_normal-0602-2005__5c3fedb--20260602-200552/ae_evidence_all.tsv
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bam_evidence_all_5c3fedb_ae_normal-0602-2005
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Jun 02, 2026 1:12 PM

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sample gene1 gene2 chr1 pos1 chr2 pos2 sv_type event_id label origin score ae_discordant_pairs ae_split_reads ae_total_depth_bp1 ae_total_depth_bp2 bam_build hg19_chr1 hg19_pos1 hg19_chr2 hg19_pos2 ae_total_support min_depth evaluability bam_verdict
659_bKP RERE IGF1 chr1 8519218 chr12 102399047 BND CALL_659_bKP_0 FP call 0.0 0 0 1 8 hg19 1 8579277.0 12 102792825.0 0 1 UNEVALUABLE UNEVALUABLE
659_bKP LMNA NTRK1 chr1 156138182 chr1 156874590 DEL CALL_659_bKP_1 TP call 0.5335 0 0 641 6255 hg19 1 156107973.0 1 156844382.0 0 641 EVALUABLE BAM_REFUTED
659_bKP intergenic(RGS1,RGS13) PAX3 chr1 192590949 chr2 222212656 BND CALL_659_bKP_2 FP call 0.0 0 0 4 3711 hg19 1 192560079.0 2 223077375.0 0 4 UNEVALUABLE UNEVALUABLE
659_bKP CRB1 intergenic(C4BPA,CD55) chr1 197421005 chr1 207203069 DUP CALL_659_bKP_3 FP call 0.0004 0 0 536 5 hg19 1 197390135.0 1 207376414.0 0 5 UNEVALUABLE UNEVALUABLE
659_bKP intergenic(PLXNA2,CAMK1G) PAX3 chr1 209512500 chr2 222212656 BND CALL_659_bKP_4 FP call 0.0 0 0 1 3711 hg19 1 209685845.0 2 223077375.0 0 1 UNEVALUABLE UNEVALUABLE
659_bKP intergenic(CENPF,KCNK2) PAX3 chr1 214912799 chr2 222212656 BND CALL_659_bKP_5 FP call 0.0 0 0 8 3711 hg19 1 215086142.0 2 223077375.0 0 8 UNEVALUABLE UNEVALUABLE
659_bKP NRXN1 NRG1 chr2 50266537 chr8 32738446 BND CALL_659_bKP_6 FP call 0.0 0 0 4 2 hg19 2 50493675.0 8 32595964.0 0 2 UNEVALUABLE UNEVALUABLE
659_bKP RND3 PAX3 chr2 150528205 chr2 222212656 DUP CALL_659_bKP_7 FP call 0.0 0 0 5 3711 hg19 2 151384719.0 2 223077375.0 0 5 UNEVALUABLE UNEVALUABLE
659_bKP PDK1 intergenic(PRL,HDGFL1) chr2 172597125 chr6 22354717 BND CALL_659_bKP_8 FP call 0.0 0 0 4 5 hg19 2 173461853.0 6 22354946.0 0 4 UNEVALUABLE UNEVALUABLE
659_bKP PAX3 IL17B chr2 222212655 chr5 149390588 BND CALL_659_bKP_9 FP call 0.0 0 0 3712 6 hg19 2 223077374.0 5 148770151.0 0 6 UNEVALUABLE UNEVALUABLE
659_bKP PAX3 GLIS3 chr2 222212656 chr9 4266596 BND CALL_659_bKP_10 FP call 0.0 0 0 3711 5 hg19 2 223077375.0 9 4266596.0 0 5 UNEVALUABLE UNEVALUABLE
659_bKP PAX3 ACOXL chr2 222212656 chr2 110963604 BND CALL_659_bKP_11 FP call 0.0 0 0 3711 4 hg19 2 223077375.0 2 111721181.0 0 4 UNEVALUABLE UNEVALUABLE
659_bKP PAX3 intergenic(MAGEB5,PPP4R3C) chr2 222212656 chrX 26740417 BND CALL_659_bKP_12 FP call 0.0 0 0 3711 0 hg19 2 223077375.0 X 26758534.0 0 0 UNEVALUABLE UNEVALUABLE
659_bKP PPARG intergenic(NUP35,ZNF804A) chr3 12298529 chr2 183921259 BND CALL_659_bKP_13 FP call 0.0 0 0 4 2 hg19 3 12340028.0 2 184785986.0 0 2 UNEVALUABLE UNEVALUABLE
659_bKP intergenic(NSUN3,EPHA6) MYO1H chr3 94801699 chr12 109410695 BND CALL_659_bKP_14 FP call 0.0 0 0 6 118 hg19 3 94520543.0 12 109848500.0 0 6 UNEVALUABLE UNEVALUABLE
659_bKP ZPLD1 PAX3 chr3 102426112 chr2 222212656 BND CALL_659_bKP_15 FP call 0.0 0 0 8 3711 hg19 3 102144956.0 2 223077375.0 0 8 UNEVALUABLE UNEVALUABLE
659_bKP DCUN1D1 ZNF827 chr3 182938518 chr4 145841975 BND CALL_659_bKP_16 FP call 0.0 0 0 6 5 hg19 3 182656306.0 4 146763127.0 0 5 UNEVALUABLE UNEVALUABLE
659_bKP ALPK1 NRG1 chr4 112440848 chr8 32738446 BND CALL_659_bKP_17 FP call 0.0 0 0 442 2 hg19 4 113362004.0 8 32595964.0 0 2 UNEVALUABLE UNEVALUABLE
659_bKP intergenic(AGA,TENM3) PAX3 chr4 179587918 chr2 222212656 BND CALL_659_bKP_18 FP call 0.0 0 0 4 3711 hg19 4 180509071.0 2 223077375.0 0 4 UNEVALUABLE UNEVALUABLE
659_bKP PDE4D PAX3 chr5 59887758 chr2 222212656 BND CALL_659_bKP_19 FP call 0.0 0 0 4 3711 hg19 5 59183585.0 2 223077375.0 0 4 UNEVALUABLE UNEVALUABLE
659_bKP ZCCHC10 PAX8 chr5 133012569 chr2 113224202 BND CALL_659_bKP_20 FP call 0.0 0 0 0 2 hg19 5 132348261.0 2 113981779.0 0 0 UNEVALUABLE UNEVALUABLE
659_bKP OPN5 NRG1 chr6 47805427 chr8 32738449 BND CALL_659_bKP_21 FP call 0.0 0 0 6 2 hg19 6 47773163.0 8 32595967.0 0 2 UNEVALUABLE UNEVALUABLE
659_bKP MOXD1 BCL2 chr6 132303780 chr18 63128507 BND CALL_659_bKP_22 FP call 0.0 0 0 0 3967 hg19 6 132624919.0 18 60795740.0 0 0 UNEVALUABLE UNEVALUABLE
659_bKP intergenic(OLIG3,TNFAIP3) NRG1 chr6 137834665 chr8 32738446 BND CALL_659_bKP_23 FP call 0.0001 0 0 0 2 hg19 6 138155802.0 8 32595964.0 0 0 UNEVALUABLE UNEVALUABLE
659_bKP ETV1 LRAT chr7 13932069 chr4 154691762 BND CALL_659_bKP_24 FP call 0.0 0 0 891 5 hg19 7 13971694.0 4 155612914.0 0 5 UNEVALUABLE UNEVALUABLE
659_bKP ETV1 LRTOMT chr7 13932069 chr11 72084905 BND CALL_659_bKP_25 FP call 0.0 0 0 891 2 hg19 7 13971694.0 11 71795951.0 0 2 UNEVALUABLE UNEVALUABLE
659_bKP ETV1 SEM1 chr7 13932070 chr7 96492790 BND CALL_659_bKP_26 FP call 0.0 0 0 888 4 hg19 7 13971695.0 7 96122102.0 0 4 UNEVALUABLE UNEVALUABLE
659_bKP ETV1 TRAPPC10 chr7 13932070 chr21 44064339 BND CALL_659_bKP_27 FP call 0.0 0 0 888 87 hg19 7 13971695.0 21 45484220.0 0 87 EVALUABLE BAM_REFUTED
659_bKP intergenic(CDCA7L,RAPGEF5) PAX3 chr7 22042583 chr2 222212655 BND CALL_659_bKP_28 FP call 0.0 0 0 1 3712 hg19 7 22082201.0 2 223077374.0 0 1 UNEVALUABLE UNEVALUABLE
659_bKP intergenic(RELN,ORC5) PAX3 chr7 104037749 chr2 222212656 BND CALL_659_bKP_29 FP call 0.0 0 0 4 3711 hg19 7 103678196.0 2 223077375.0 0 4 UNEVALUABLE UNEVALUABLE
659_bKP intergenic(DUSP26,UNC5D) BARD1 chr8 34014069 chr2 214728365 BND CALL_659_bKP_30 FP call 0.0 0 0 2 787 hg19 8 33871587.0 2 215593089.0 0 2 UNEVALUABLE UNEVALUABLE
659_bKP ASAP1 intergenic(PDE4A,KEAP1) chr8 130060939 chr19 10471226 BND CALL_659_bKP_31 FP call 0.0008 0 0 845 4 hg19 8 131073185.0 19 10581902.0 0 4 UNEVALUABLE UNEVALUABLE
659_bKP JAK2 intergenic(LURAP1L,MPDZ) chr9 5073719 chr9 13002770 DUP CALL_659_bKP_32 FP call 0.0004 0 0 320 2 hg19 9 5073719.0 9 13002769.0 0 2 UNEVALUABLE UNEVALUABLE
659_bKP intergenic(SPATA31D1,RASEF) PAX3 chr9 82598256 chr2 222212656 BND CALL_659_bKP_33 FP call 0.0 0 0 10 3711 hg19 9 85213171.0 2 223077375.0 0 10 UNEVALUABLE UNEVALUABLE
659_bKP LRMDA FAM227B chr10 76353331 chr15 49423241 BND CALL_659_bKP_34 FP call 0.0002 0 0 5 2159 hg19 10 78113089.0 15 49715438.0 0 5 UNEVALUABLE UNEVALUABLE
659_bKP FANCF RRM1 chr11 22624402 chr11 4102750 BND CALL_659_bKP_35 FP call 0.0 0 0 715 9 hg19 11 22645948.0 11 4123980.0 0 9 UNEVALUABLE UNEVALUABLE
659_bKP intergenic(OR5D3P,OR5D13) ZBTB7A chr11 55742302 chr19 4043375 BND CALL_659_bKP_36 FP call 0.0 0 0 0 9 hg19 11 55509778.0 19 4043373.0 0 0 UNEVALUABLE UNEVALUABLE
659_bKP intergenic(LRRC55,APLNR) PAX3 chr11 57213887 chr2 222212655 BND CALL_659_bKP_37 FP call 0.0 0 0 6 3712 hg19 11 56981361.0 2 223077374.0 0 6 UNEVALUABLE UNEVALUABLE
659_bKP ARHGEF12 FAM227B chr11 120347271 chr15 49423241 BND CALL_659_bKP_38 FP call 0.0001 0 0 4 2159 hg19 11 120217980.0 15 49715438.0 0 4 UNEVALUABLE UNEVALUABLE
659_bKP intergenic(KCNA5,NTF3) NRG1 chr12 5136465 chr8 32738445 BND CALL_659_bKP_39 FP call 0.0 0 0 2 2 hg19 12 5245631.0 8 32595963.0 0 2 UNEVALUABLE UNEVALUABLE
659_bKP ST8SIA1 ETV1 chr12 22266849 chr7 13932069 BND CALL_659_bKP_40 FP call 0.0 0 0 4 891 hg19 12 22419783.0 7 13971694.0 0 4 UNEVALUABLE UNEVALUABLE
659_bKP intergenic(CPB2,LCP1) PAX3 chr13 46123375 chr2 222212656 BND CALL_659_bKP_41 FP call 0.0 0 0 6 3711 hg19 13 46697510.0 2 223077375.0 0 6 UNEVALUABLE UNEVALUABLE
659_bKP RB1 intergenic(ANKRD30B,ROCK1) chr13 48386101 chr18 15348137 BND CALL_659_bKP_42 FP call 0.0011 0 0 4 4 hg19 13 48960237.0 18 15348136.0 0 4 UNEVALUABLE UNEVALUABLE
659_bKP intergenic(SNX6,CFL2) ETV1 chr14 34671587 chr7 13932070 BND CALL_659_bKP_43 FP call 0.0 0 0 10 888 hg19 14 35140793.0 7 13971695.0 0 10 UNEVALUABLE UNEVALUABLE
659_bKP NRXN3 ETV1 chr14 79044699 chr7 13919602 BND CALL_659_bKP_44 FP call 0.0 0 0 6 5 hg19 14 79511042.0 7 13959227.0 0 5 UNEVALUABLE UNEVALUABLE
659_bKP THSD4 NRG1 chr15 71240822 chr8 32738448 BND CALL_659_bKP_45 FP call 0.0 0 0 6 2 hg19 15 71533161.0 8 32595966.0 0 2 UNEVALUABLE UNEVALUABLE
659_bKP PLCG2 intergenic(LAIR2,LILRA2) chr16 81960491 chr19 54541952 BND CALL_659_bKP_46 FP call 0.0 0 0 0 5 hg19 16 81994096.0 19 55053160.0 0 0 UNEVALUABLE UNEVALUABLE
659_bKP intergenic(MTCL1,NDUFV2) PAX3 chr18 9085063 chr2 222212656 BND CALL_659_bKP_47 FP call 0.0 0 0 7 3711 hg19 18 9085061.0 2 223077375.0 0 7 UNEVALUABLE UNEVALUABLE
659_bKP intergenic(PIEZO2,SLC35G4) PAX3 chr18 11191011 chr2 222212656 BND CALL_659_bKP_48 FP call 0.0001 0 0 0 3711 hg19 18 11191010.0 2 223077375.0 0 0 UNEVALUABLE UNEVALUABLE
659_bKP SETBP1 intergenic(SETBP1,SLC14A2) chr18 45066449 chr18 45068541 DUP CALL_659_bKP_49 FP call 0.0 0 0 4 8 hg19 18 42646414.0 18 42648506.0 0 4 UNEVALUABLE UNEVALUABLE
659_bKP ARHGEF18 PAX3 chr19 7355069 chr2 222212655 BND CALL_659_bKP_50 FP call 0.0 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_bKP ARHGAP35 CPNE4 chr19 47003919 chr3 131799905 BND CALL_659_bKP_51 FP call 0.0 0 0 2 8 hg19 19 47507176.0 3 131518749.0 0 2 UNEVALUABLE UNEVALUABLE
659_bKP NOL4L PAX3 chr20 32478243 chr2 222212656 BND CALL_659_bKP_52 FP call 0.0 0 0 8 3711 hg19 20 31066046.0 2 223077375.0 0 8 UNEVALUABLE UNEVALUABLE
659_bKP intergenic(ZNF217,BCAS1) SYK chr20 53861629 chr9 90896786 BND CALL_659_bKP_53 FP call 0.0 0 0 4 3 hg19 20 52478168.0 9 93659068.0 0 3 UNEVALUABLE UNEVALUABLE
659_bKP NF2 FANK1 chr22 29658628 chr10 126003026 BND CALL_659_bKP_54 FP call 0.0 0 0 353 0 hg19 22 30054617.0 10 127691595.0 0 0 UNEVALUABLE UNEVALUABLE
659_bKP GRIPAP1 PAX3 chrX 48980266 chr2 222212656 BND CALL_659_bKP_55 FP call 0.0 0 0 11 3711 hg19 X 48836679.0 2 223077375.0 0 11 UNEVALUABLE UNEVALUABLE
659_bKP PHF6 SENP7 chrX 134410412 chr3 101346179 BND CALL_659_bKP_56 FP call 0.0002 0 0 5 2 hg19 X 133544442.0 3 101065023.0 0 2 UNEVALUABLE UNEVALUABLE
659_bKP LMNA NTRK1 chr1 156138181 chr1 156874589 DELETION TRUTH_659_bKP_57 TRUTH truth 138.0 0 0 641 6253 hg19 1 156107972.0 1 156844381.0 0 641 EVALUABLE BAM_REFUTED
659_7h MXRA8 intergenic(CNTNAP5,GYPC) chr1 1355258 chr2 124976441 BND CALL_659_7h_0 FP call 0.0045 0 0 1402 0 hg19 1 1290638.0 2 125734018.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h intergenic(PHC2,ZSCAN20) ZNF160 chr1 33453761 chr19 53070224 BND CALL_659_7h_1 FP call 0.0025 0 0 2 1309 hg19 1 33919362.0 19 53573477.0 0 2 UNEVALUABLE UNEVALUABLE
659_7h ADSS2 SPTLC2 chr1 244451761 chr14 77605623 BND CALL_659_7h_2 TP call 0.9925 0 0 523 0 hg19 1 244615063.0 14 78071966.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h ASAP2 intergenic(DPP10,DDX18) chr2 9388329 chr2 117140604 BND CALL_659_7h_3 FP call 0.0001 0 0 988 0 hg19 2 9528458.0 2 117898180.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h ASAP2 intergenic(TOLLIP,BRSK2) chr2 9388487 chr11 1318781 BND CALL_659_7h_4 TP call 0.9848 0 0 989 8 hg19 2 9528616.0 11 1340011.0 0 8 UNEVALUABLE UNEVALUABLE
659_7h TTC21B FPR1 chr2 165944410 chr19 51746039 BND CALL_659_7h_5 FP call 0.0 0 0 1 1203 hg19 2 166800920.0 19 52249292.0 0 1 UNEVALUABLE UNEVALUABLE
659_7h MAP3K20 NKAIN2 chr2 173266420 chr6 124307549 BND CALL_659_7h_6 FP call 0.0 0 0 1859 2 hg19 2 174131148.0 6 124628695.0 0 2 UNEVALUABLE UNEVALUABLE
659_7h HOXD1 intergenic(GRM5,TYR) chr2 176189169 chr11 89112133 BND CALL_659_7h_7 FP call 0.0023 0 0 1145 0 hg19 2 177053897.0 11 88845301.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h intergenic(PGAP1,ANKRD44) DISP3 chr2 196946334 chr1 11519439 BND CALL_659_7h_8 FP call 0.8226 0 0 0 995 hg19 2 197811058.0 1 11579496.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h intergenic(GRIP2,CCDC174) FANCG chr3 14570391 chr9 35075712 BND CALL_659_7h_9 FP call 0.0 0 0 0 2803 hg19 3 14611898.0 9 35075709.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h ACAA1 SVIL chr3 38122426 chr10 29673551 BND CALL_659_7h_10 FP call 0.4739 0 0 1917 1 hg19 3 38163917.0 10 29962480.0 0 1 UNEVALUABLE UNEVALUABLE
659_7h intergenic(GBE1,CADM2) PRSS16 chr3 83281247 chr6 27255039 BND CALL_659_7h_11 FP call 0.9204 0 0 0 1216 hg19 3 83330398.0 6 27222818.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h CIP2A PCDHB1 chr3 108556898 chr5 141053393 BND CALL_659_7h_12 FP call 0.0002 0 0 264 1397 hg19 3 108275745.0 5 140432978.0 0 264 EVALUABLE BAM_REFUTED
659_7h intergenic(DIPK2A,PLOD2) RBBP8NL chr3 145098486 chr20 62412848 BND CALL_659_7h_13 TP call 0.9073 0 0 2 840 hg19 3 144816266.0 20 60987904.0 0 2 UNEVALUABLE UNEVALUABLE
659_7h MED12L SOS1 chr3 151109323 chr2 38992749 BND CALL_659_7h_14 FP call 0.0002 0 0 2 1 hg19 3 150827110.0 2 39219890.0 0 1 UNEVALUABLE UNEVALUABLE
659_7h SORCS2 SOS1 chr4 7458723 chr2 38992746 BND CALL_659_7h_15 FP call 0.0 0 0 5 1 hg19 4 7460450.0 2 39219887.0 0 1 UNEVALUABLE UNEVALUABLE
659_7h LDB2 HLA-B chr4 16690683 chr6 31356632 BND CALL_659_7h_16 FP call 0.0 0 0 0 3528 hg19 4 16692306.0 6 31324409.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h intergenic(SPATA18,USP46) XPO1 chr4 52255511 chr2 61478517 BND CALL_659_7h_17 FP call 0.0 0 0 0 1112 hg19 4 53121677.0 2 61705652.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h intergenic(TACR3,CXXC4) KAT6B chr4 104126330 chr10 75029171 BND CALL_659_7h_18 FP call 0.0726 0 0 0 2016 hg19 4 105047487.0 10 76788929.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h SYNPO2 DLGAP4 chr4 118939430 chr20 36432389 BND CALL_659_7h_19 TP call 0.0373 0 0 2 2560 hg19 4 119860585.0 20 35060792.0 0 2 UNEVALUABLE UNEVALUABLE
659_7h intergenic(RAPGEF2,FSTL5) NTRK3 chr4 160156736 chr15 88058127 BND CALL_659_7h_20 FP call 0.0 0 0 0 0 hg19 4 161077888.0 15 88601358.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h ZFP42 intergenic(DUSP10,HHIPL2) chr4 188003529 chr1 222111460 BND CALL_659_7h_21 FP call 0.1058 0 0 1532 4 hg19 4 188924683.0 1 222284802.0 0 4 UNEVALUABLE UNEVALUABLE
659_7h intergenic(TRIML1,FRG1) PCDHB1 chr4 188703959 chr5 141053417 BND CALL_659_7h_22 FP call 0.0 0 0 0 1363 hg19 4 189625113.0 5 140433002.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h intergenic(ICE1,MED10) FRS2 chr5 6253027 chr12 69577774 BND CALL_659_7h_23 FP call 0.0 0 0 2 3 hg19 5 6253140.0 12 69971554.0 0 2 UNEVALUABLE UNEVALUABLE
659_7h CSF1R intergenic(SMC2,OR13F1) chr5 150069967 chr9 104170108 BND CALL_659_7h_24 FP call 0.0 0 0 2524 0 hg19 5 149449530.0 9 106932389.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h CSF1R AVL9 chr5 150070495 chr7 32565292 BND CALL_659_7h_25 FP call 0.0 0 0 2245 4 hg19 5 149450058.0 7 32604904.0 0 4 UNEVALUABLE UNEVALUABLE
659_7h CSF1R EYS chr5 150070530 chr6 65263830 BND CALL_659_7h_26 FP call 0.0 0 0 2102 1 hg19 5 149450093.0 6 65973723.0 0 1 UNEVALUABLE UNEVALUABLE
659_7h intergenic(MAT2B,TENM2) KMT2B chr5 164614814 chr19 35727713 BND CALL_659_7h_27 FP call 0.0 0 0 0 1170 hg19 5 164041820.0 19 36218614.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h intergenic(MOCS1,LRFN2) SPPL2B chr6 40350389 chr19 2351610 BND CALL_659_7h_28 FP call 0.3751 0 0 0 391 hg19 6 40318128.0 19 2351608.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h intergenic(PRDM13,MCHR2) LIAS chr6 99776066 chr4 39460843 BND CALL_659_7h_29 FP call 0.0012 0 0 0 331 hg19 6 100223942.0 4 39462463.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h intergenic(CLVS2,TRDN) CSF1R chr6 123143197 chr5 150069985 BND CALL_659_7h_30 FP call 0.0 0 0 3 2588 hg19 6 123464342.0 5 149449548.0 0 3 UNEVALUABLE UNEVALUABLE
659_7h ARFGEF3 ECH1 chr6 138189229 chr19 38831095 BND CALL_659_7h_31 FP call 0.0 0 0 3 752 hg19 6 138510366.0 19 39321735.0 0 3 UNEVALUABLE UNEVALUABLE
659_7h FOXK1 PCDHB1 chr7 4723484 chr5 141052850 BND CALL_659_7h_32 FP call 0.0002 0 0 2 1516 hg19 7 4763115.0 5 140432435.0 0 2 UNEVALUABLE UNEVALUABLE
659_7h JAZF1 FPR1 chr7 28073062 chr19 51746036 BND CALL_659_7h_33 TP call 0.0 0 0 0 1197 hg19 7 28112681.0 19 52249289.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h intergenic(KMT2C,XRCC2) FPR1 chr7 152522093 chr19 51746520 BND CALL_659_7h_34 FP call 0.0008 0 0 4 1958 hg19 7 152219178.0 19 52249773.0 0 4 UNEVALUABLE UNEVALUABLE
659_7h CSMD1 PLCB3 chr8 4508291 chr11 64261660 BND CALL_659_7h_35 FP call 0.0041 0 0 1 605 hg19 8 4365813.0 11 64029132.0 0 1 UNEVALUABLE UNEVALUABLE
659_7h PLAG1 FRS2 chr8 56175640 chr12 69577775 BND CALL_659_7h_36 FP call 0.0001 0 0 0 3 hg19 8 57088199.0 12 69971555.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h EYA1 KAT6B chr8 71394836 chr10 75029709 BND CALL_659_7h_37 FP call 0.0004 0 0 1 1804 hg19 8 72307071.0 10 76789467.0 0 1 UNEVALUABLE UNEVALUABLE
659_7h ERP44 CNBD1 chr9 100050474 chr8 87237060 BND CALL_659_7h_38 FP call 0.4716 0 0 0 279 hg19 9 102812756.0 8 88249288.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h ECPAS RYR2 chr9 111437028 chr1 237556808 BND CALL_659_7h_39 TP_DUP call 0.9976 0 0 447 4 hg19 9 114199308.0 1 237720108.0 0 4 UNEVALUABLE UNEVALUABLE
659_7h intergenic(BRINP1,CDK5RAP2) RPH3A chr9 119652017 chr12 112865420 BND CALL_659_7h_40 TP call 0.9749 0 0 3 429 hg19 9 122414295.0 12 113303225.0 0 3 UNEVALUABLE UNEVALUABLE
659_7h PTGDR2 intergenic(RDX,FDX1) chr11 60852639 chr11 110367459 DEL CALL_659_7h_41 TP call 0.9413 0 0 1249 4 hg19 11 60620112.0 11 110238184.0 0 4 UNEVALUABLE UNEVALUABLE
659_7h PTGDR2 GSDME chr11 60852805 chr7 24722700 BND CALL_659_7h_42 FP call 0.0 0 0 1670 4 hg19 11 60620278.0 7 24762319.0 0 4 UNEVALUABLE UNEVALUABLE
659_7h MGST1 SLCO1A2 chr12 16357654 chr12 21283191 BND CALL_659_7h_43 FP call 0.003 0 0 215 0 hg19 12 16510588.0 12 21436125.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h LMNTD1 GRIP1 chr12 25526169 chr12 66743486 BND CALL_659_7h_44 FP call 0.0158 0 0 377 0 hg19 12 25679103.0 12 67137266.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h TMTC1 HAL chr12 29741697 chr12 95995697 BND CALL_659_7h_45 FP call 0.392 0 0 0 509 hg19 12 29894630.0 12 96389475.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h KIF21A MUCL1 chr12 39340265 chr12 54848298 DEL CALL_659_7h_46 FP call 0.0319 0 0 365 2 hg19 12 39734067.0 12 55242082.0 0 2 UNEVALUABLE UNEVALUABLE
659_7h NELL2 FGD6 chr12 44709748 chr12 95210386 DUP CALL_659_7h_47 FP call 0.0126 0 0 0 2113 hg19 12 45103531.0 12 95604162.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h PPM1H CSF1R chr12 62671561 chr5 150069962 BND CALL_659_7h_48 FP call 0.0 0 0 0 2498 hg19 12 63065341.0 5 149449525.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h intergenic(TMTC3,KITLG) MAP3K20 chr12 88455501 chr2 173266435 BND CALL_659_7h_49 TP_DUP call 0.0004 0 0 7 1859 hg19 12 88849278.0 2 174131163.0 0 7 UNEVALUABLE UNEVALUABLE
659_7h DNAH10 PRSS16 chr12 123876006 chr6 27255039 BND CALL_659_7h_50 FP call 0.9139 0 0 275 1216 hg19 12 124360553.0 6 27222818.0 0 275 EVALUABLE BAM_REFUTED
659_7h intergenic(PRR20E,PCDH17) WDR26 chr13 57242425 chr1 224418369 BND CALL_659_7h_51 TP_DUP call 0.0044 0 0 2 518 hg19 13 57816559.0 1 224606071.0 0 2 UNEVALUABLE UNEVALUABLE
659_7h intergenic(OBI1,RBM26) KRAS chr13 79143567 chr12 25209104 BND CALL_659_7h_52 FP call 0.0 0 0 5 793 hg19 13 79717702.0 12 25362038.0 0 5 UNEVALUABLE UNEVALUABLE
659_7h CLEC16A ENSG00000259132 chr16 11126029 chr14 22956913 BND CALL_659_7h_53 FP call 0.033 0 0 937 3 hg19 16 11219886.0 14 23426122.0 0 3 UNEVALUABLE UNEVALUABLE
659_7h CLEC16A ERBB2 chr16 11126037 chr17 39724887 BND CALL_659_7h_54 TP call 0.0002 0 0 937 2507 hg19 16 11219894.0 17 37881140.0 0 937 EVALUABLE BAM_REFUTED
659_7h CLEC16A TBL1X chr16 11126054 chrX 9510964 BND CALL_659_7h_55 FP call 0.0 0 0 938 0 hg19 16 11219911.0 X 9479004.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h HS3ST4 NTRK3 chr16 25884423 chr15 88058129 BND CALL_659_7h_56 FP call 0.0 0 0 6 0 hg19 16 25895744.0 15 88601360.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h ZNF19 PDE10A chr16 71475721 chr6 165611750 BND CALL_659_7h_57 FP call 0.0001 0 0 2354 1 hg19 16 71509624.0 6 166025238.0 0 1 UNEVALUABLE UNEVALUABLE
659_7h intergenic(KIF2B,TOM1L1) FANCG chr17 54836952 chr9 35075720 BND CALL_659_7h_58 FP call 0.0007 0 0 2 2792 hg19 17 52914313.0 9 35075717.0 0 2 UNEVALUABLE UNEVALUABLE
659_7h MARCHF10 ZNF19 chr17 62746091 chr16 71475707 BND CALL_659_7h_59 FP call 0.0016 0 0 2 2359 hg19 17 60823452.0 16 71509610.0 0 2 UNEVALUABLE UNEVALUABLE
659_7h intergenic(INO80C,GALNT1) NTRK3 chr18 35544621 chr15 88057600 BND CALL_659_7h_60 FP call 0.0 0 0 1 3 hg19 18 33124585.0 15 88600831.0 0 1 UNEVALUABLE UNEVALUABLE
659_7h PHLPP1 BCL2 chr18 62726622 chr18 63313893 BND CALL_659_7h_61 FP call 0.068 0 0 11 0 hg19 18 60393855.0 18 60981126.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h KCNG2 UQCC1 chr18 79878691 chr20 35314743 BND CALL_659_7h_62 FP call 0.8986 0 0 1 286 hg19 18 77638691.0 20 33902546.0 0 1 UNEVALUABLE UNEVALUABLE
659_7h SPPL2B LINGO2 chr19 2351467 chr9 27986925 BND CALL_659_7h_63 FP call 0.1892 0 0 391 0 hg19 19 2351465.0 9 27986923.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h intergenic(ZNF254,UQCRFS1) DLGAP4 chr19 24334385 chr20 36431900 BND CALL_659_7h_64 TP call 0.0004 0 0 1 2104 hg19 19 24517187.0 20 35060303.0 0 1 UNEVALUABLE UNEVALUABLE
659_7h FPR1 intergenic(SV2B,SLCO3A1) chr19 51746031 chr15 91333407 BND CALL_659_7h_65 FP call 0.0001 0 0 1187 0 hg19 19 52249284.0 15 91876637.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h FPR1 intergenic(ST3GAL1,ZFAT) chr19 51746532 chr8 134353281 BND CALL_659_7h_66 FP call 0.0001 0 0 1940 0 hg19 19 52249785.0 8 135365524.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h ZNF497 AKT3 chr19 58362174 chr1 243850238 BND CALL_659_7h_67 FP call 0.0921 0 0 1 408 hg19 19 58873540.0 1 244013540.0 0 1 UNEVALUABLE UNEVALUABLE
659_7h DLGAP4 SAMD14 chr20 36431869 chr17 50124535 BND CALL_659_7h_68 FP call 0.0 0 0 2051 255 hg19 20 35060272.0 17 48201899.0 0 255 EVALUABLE BAM_REFUTED
659_7h DLGAP4 ETV6 chr20 36432413 chr12 11702060 BND CALL_659_7h_69 FP call 0.0568 0 0 2492 3 hg19 20 35060816.0 12 11854994.0 0 3 UNEVALUABLE UNEVALUABLE
659_7h intergenic(DHX35,MAFB) JPH2 chr20 39557593 chr20 44115834 BND CALL_659_7h_70 TP call 0.9335 0 0 22 1266 hg19 20 38186236.0 20 42744474.0 0 22 EVALUABLE BAM_REFUTED
659_7h PKIG SOS1 chr20 44579227 chr2 38992741 BND CALL_659_7h_71 FP call 0.0 0 0 0 1 hg19 20 43207868.0 2 39219882.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h intergenic(PARD6B,BCAS4) NTRK3 chr20 50763635 chr15 88058137 BND CALL_659_7h_72 FP call 0.0 0 0 4 0 hg19 20 49380172.0 15 88601368.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h NDUFV3 FAM227B chr21 42908932 chr15 49458393 BND CALL_659_7h_73 TP_DUP call 0.9671 0 0 481 0 hg19 21 44329042.0 15 49750590.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h PCNT intergenic(HTR3C,HTR3E) chr21 46346162 chr3 184066290 BND CALL_659_7h_74 FP call 0.6718 0 0 254 2 hg19 21 47766076.0 3 183784078.0 0 2 UNEVALUABLE UNEVALUABLE
659_7h KCTD17 FRS2 chr22 37055104 chr12 69577447 BND CALL_659_7h_75 FP call 0.0145 0 0 2 0 hg19 22 37451144.0 12 69971227.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h MXRA8 ANKS1B chr1 1355675 chr12 98947861 TRANSLOCATION TRUTH_659_7h_76 TRUTH truth 27.0 0 0 711 1 hg19 1 1291055.0 12 99341639.0 0 1 UNEVALUABLE UNEVALUABLE
659_7h PLCH2 intergenic(SLC4A3,EPHA4) chr1 2480286 chr2 220591424 TRANSLOCATION TRUTH_659_7h_77 TRUTH truth 28.0 0 0 815 0 hg19 1 2411725.0 2 221456145.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h F5 intergenic(HS1BP3,GDF7) chr1 169530860 chr2 20664045 TRANSLOCATION TRUTH_659_7h_78 TRUTH truth 31.0 0 0 498 1 hg19 1 169500098.0 2 20863805.0 0 1 UNEVALUABLE UNEVALUABLE
659_7h WDR26 TXN2 chr1 224418298 chr22 36480831 TRANSLOCATION TRUTH_659_7h_79 TRUTH truth 25.0 0 0 518 785 hg19 1 224606000.0 22 36876878.0 0 518 EVALUABLE BAM_REFUTED
659_7h WDR26 intergenic(PRR20E,PCDH17) chr1 224418368 chr13 57242424 TRANSLOCATION TRUTH_659_7h_80 TRUTH truth 26.0 0 0 518 2 hg19 1 224606070.0 13 57816558.0 0 2 UNEVALUABLE UNEVALUABLE
659_7h RYR2 ECPAS chr1 237556807 chr9 111437027 TRANSLOCATION TRUTH_659_7h_81 TRUTH truth 33.0 0 0 4 447 hg19 1 237720107.0 9 114199307.0 0 4 UNEVALUABLE UNEVALUABLE
659_7h ADSS2 SPTLC2 chr1 244451760 chr14 77605622 TRANSLOCATION TRUTH_659_7h_82 TRUTH truth 41.0 0 0 523 0 hg19 1 244615062.0 14 78071965.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h PXDN intergenic(LGALS13,LGALS16) chr2 1643459 chr19 39612108 TRANSLOCATION TRUTH_659_7h_83 TRUTH truth 50.0 0 0 661 0 hg19 2 1647231.0 19 40102748.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h ASAP2 intergenic(TOLLIP,BRSK2) chr2 9388486 chr11 1318780 TRANSLOCATION TRUTH_659_7h_84 TRUTH truth 50.0 0 0 989 8 hg19 2 9528615.0 11 1340010.0 0 8 UNEVALUABLE UNEVALUABLE
659_7h MAP3K20 intergenic(TMTC3,KITLG) chr2 173266599 chr12 88455665 TRANSLOCATION TRUTH_659_7h_85 TRUTH truth 65.0 0 0 1807 3 hg19 2 174131327.0 12 88849442.0 0 3 UNEVALUABLE UNEVALUABLE
659_7h MAP3K20 PSMA1 chr2 173266604 chr11 14639656 TRANSLOCATION TRUTH_659_7h_86 TRUTH truth 58.0 0 0 1798 2 hg19 2 174131332.0 11 14661202.0 0 2 UNEVALUABLE UNEVALUABLE
659_7h intergenic(CHL1,CNTN6) ZNF462 chr3 907462 chr9 106924714 TRANSLOCATION TRUTH_659_7h_87 TRUTH truth 28.0 0 0 0 2298 hg19 3 949145.0 9 109686995.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h intergenic(DIPK2A,PLOD2) RBBP8NL chr3 145098485 chr20 62412847 TRANSLOCATION TRUTH_659_7h_88 TRUTH truth 29.0 0 0 2 840 hg19 3 144816265.0 20 60987903.0 0 2 UNEVALUABLE UNEVALUABLE
659_7h STPG2 NTRK3 chr4 97818248 chr15 87978860 TRANSLOCATION TRUTH_659_7h_89 TRUTH truth 51.0 0 0 4 5370 hg19 4 98739399.0 15 88522091.0 0 4 UNEVALUABLE UNEVALUABLE
659_7h SYNPO2 DLGAP4 chr4 118939288 chr20 36432243 TRANSLOCATION TRUTH_659_7h_90 TRUTH truth 38.0 0 0 1 2855 hg19 4 119860443.0 20 35060646.0 0 1 UNEVALUABLE UNEVALUABLE
659_7h STEAP1B PTPN6 chr7 22553304 chr12 6956476 TRANSLOCATION TRUTH_659_7h_91 TRUTH truth 30.0 0 0 3 811 hg19 7 22592923.0 12 7065639.0 0 3 UNEVALUABLE UNEVALUABLE
659_7h JAZF1 FPR1 chr7 28073178 chr19 51746138 TRANSLOCATION TRUTH_659_7h_92 TRUTH truth 30.0 0 0 0 1369 hg19 7 28112797.0 19 52249391.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h intergenic(YTHDF3,BHLHE22) NTRK3 chr8 63884889 chr15 87979086 TRANSLOCATION TRUTH_659_7h_93 TRUTH truth 58.0 0 0 0 4600 hg19 8 64797446.0 15 88522317.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h intergenic(PEX2,PKIA) C11orf68 chr8 77228335 chr11 65917728 TRANSLOCATION TRUTH_659_7h_94 TRUTH truth 35.0 0 0 5 2019 hg19 8 78140571.0 11 65685199.0 0 5 UNEVALUABLE UNEVALUABLE
659_7h ADAMTSL1 ENSG00000268083 chr9 18808856 chr19 38831473 TRANSLOCATION TRUTH_659_7h_95 TRUTH truth 45.0 0 0 1 1011 hg19 9 18808854.0 19 39322113.0 0 1 UNEVALUABLE UNEVALUABLE
659_7h intergenic(BRINP1,CDK5RAP2) RPH3A chr9 119652016 chr12 112865419 TRANSLOCATION TRUTH_659_7h_96 TRUTH truth 47.0 0 0 3 429 hg19 9 122414294.0 12 113303224.0 0 3 UNEVALUABLE UNEVALUABLE
659_7h CC2D2B ABRAXAS2 chr10 96012605 chr10 124826812 DUPLICATION TRUTH_659_7h_97 TRUTH truth 26.0 0 0 240 427 hg19 10 97772362.0 10 126515381.0 0 240 EVALUABLE BAM_REFUTED
659_7h PTGDR2 intergenic(RDX,FDX1) chr11 60852671 chr11 110367385 DELETION TRUTH_659_7h_98 TRUTH truth 57.0 0 0 1302 4 hg19 11 60620144.0 11 110238110.0 0 4 UNEVALUABLE UNEVALUABLE
659_7h MIPEP C19orf44 chr13 23822736 chr19 16503346 TRANSLOCATION TRUTH_659_7h_99 TRUTH truth 64.0 0 0 4 820 hg19 13 24396875.0 19 16614157.0 0 4 UNEVALUABLE UNEVALUABLE
659_7h FAM227B NDUFV3 chr15 49458391 chr21 42908931 TRANSLOCATION TRUTH_659_7h_100 TRUTH truth 57.0 0 0 0 481 hg19 15 49750588.0 21 44329041.0 0 0 UNEVALUABLE UNEVALUABLE
659_7h CLEC16A ERBB2 chr16 11126205 chr17 39725049 TRANSLOCATION TRUTH_659_7h_101 TRUTH truth 58.0 0 0 939 2688 hg19 16 11220062.0 17 37881302.0 0 939 EVALUABLE BAM_REFUTED
659_7h C19orf44 NHSL2 chr19 16503183 chrX 72063994 TRANSLOCATION TRUTH_659_7h_102 TRUTH truth 26.0 0 0 820 1 hg19 19 16613994.0 X 71283844.0 0 1 UNEVALUABLE UNEVALUABLE
659_7h intergenic(ZNF254,UQCRFS1) DLGAP4 chr19 24334258 chr20 36432026 TRANSLOCATION TRUTH_659_7h_103 TRUTH truth 53.0 0 0 1 2420 hg19 19 24517060.0 20 35060429.0 0 1 UNEVALUABLE UNEVALUABLE
659_7h intergenic(DHX35,MAFB) JPH2 chr20 39557591 chr20 44115832 INVERSION TRUTH_659_7h_104 TRUTH truth 71.0 0 0 22 1265 hg19 20 38186234.0 20 42744472.0 0 22 EVALUABLE BAM_REFUTED
1173_HOB TPM3 NTRK1 chr1 154165373 chr1 156874079 BND CALL_1173_HOB_0 TP call 0.9994 0 0 5 9536 hg19 1 154137849.0 1 156843871.0 0 5 UNEVALUABLE UNEVALUABLE
1173_HOB intergenic(LPIN1,TRIB2) SMAD2 chr2 12150282 chr18 47879496 BND CALL_1173_HOB_1 FP call 0.0002 0 0 4 8 hg19 2 12290408.0 18 45405867.0 0 4 UNEVALUABLE UNEVALUABLE
1173_HOB intergenic(ARL4C,SH3BP4) SLC45A3 chr2 234902379 chr1 205679686 BND CALL_1173_HOB_2 FP call 0.0 0 0 8 3 hg19 2 235811023.0 1 205648814.0 0 3 UNEVALUABLE UNEVALUABLE
1173_HOB CD96 SMAD2 chr3 111344158 chr18 47879497 BND CALL_1173_HOB_3 FP call 0.0045 0 0 0 8 hg19 3 111063005.0 18 45405868.0 0 0 UNEVALUABLE UNEVALUABLE
1173_HOB JARID2 SMAD2 chr6 15300723 chr18 47879496 BND CALL_1173_HOB_4 FP call 0.0 0 0 2 8 hg19 6 15300954.0 18 45405867.0 0 2 UNEVALUABLE UNEVALUABLE
1173_HOB PRKN CDK1 chr6 162306159 chr10 60794852 BND CALL_1173_HOB_5 FP call 0.4635 0 0 1 0 hg19 6 162727191.0 10 62554610.0 0 0 UNEVALUABLE UNEVALUABLE
1173_HOB intergenic(CSMD3,TRPS1) AR chr8 114411830 chrX 67701710 BND CALL_1173_HOB_6 FP call 0.0 0 0 4 0 hg19 8 115424059.0 X 66921552.0 0 0 UNEVALUABLE UNEVALUABLE
1173_HOB GML CYP11B2 chr8 142879580 chr8 142917576 DUP CALL_1173_HOB_7 FP call 0.933 0 0 1788 1865 hg19 8 143960996.0 8 143998992.0 0 1788 EVALUABLE BAM_REFUTED
1173_HOB CYP11B2 intergenic(CYP11B2,LY6E) chr8 142917660 chr8 142927699 DEL CALL_1173_HOB_8 FP call 0.0175 0 0 1538 4 hg19 8 143999076.0 8 144009115.0 0 4 UNEVALUABLE UNEVALUABLE
1173_HOB NRXN3 SMAD2 chr14 78385291 chr18 47879496 BND CALL_1173_HOB_9 FP call 0.0006 0 0 2 8 hg19 14 78851634.0 18 45405867.0 0 2 UNEVALUABLE UNEVALUABLE
1173_HOB SMAD2 intergenic(IFTAP,LRRC4C) chr18 47879496 chr11 37941478 BND CALL_1173_HOB_10 FP call 0.0002 0 0 8 1 hg19 18 45405867.0 11 37963028.0 0 1 UNEVALUABLE UNEVALUABLE
1173_HOB SMAD2 intergenic(ITGA11,CORO2B) chr18 47879496 chr15 68466588 BND CALL_1173_HOB_11 FP call 0.0016 0 0 8 12 hg19 18 45405867.0 15 68758927.0 0 8 UNEVALUABLE UNEVALUABLE
1173_HOB SMAD2 intergenic(HS3ST3B1,PMP22) chr18 47879496 chr17 14651867 BND CALL_1173_HOB_12 FP call 0.0 0 0 8 6 hg19 18 45405867.0 17 14555184.0 0 6 UNEVALUABLE UNEVALUABLE
1173_HOB TPM3 NTRK1 chr1 154165372 chr1 156874078 INVERSION TRUTH_1173_HOB_13 TRUTH truth 224.0 0 0 5 9534 hg19 1 154137848.0 1 156843870.0 0 5 UNEVALUABLE UNEVALUABLE
659_bMa intergenic(NEGR1,LRRIQ3) BCL2 chr1 72895721 chr18 63128464 BND CALL_659_bMa_0 FP call 0.0 0 0 1 5245 hg19 1 73361404.0 18 60795697.0 0 1 UNEVALUABLE UNEVALUABLE
659_bMa intergenic(PLCL1,SATB2) BCL2 chr2 199167451 chr18 63128464 BND CALL_659_bMa_1 FP call 0.0 0 0 8 5245 hg19 2 200032174.0 18 60795697.0 0 8 UNEVALUABLE UNEVALUABLE
659_bMa intergenic(IL12B,ADRA1B) CADM1 chr5 159554854 chr11 115209590 BND CALL_659_bMa_2 FP call 0.0 0 0 1 892 hg19 5 158981862.0 11 115080310.0 0 1 UNEVALUABLE UNEVALUABLE
659_bMa HLA-B intergenic(OTOL1,SI) chr6 31356141 chr3 164369706 BND CALL_659_bMa_3 FP call 0.0083 0 0 6199 0 hg19 6 31323918.0 3 164087494.0 0 0 UNEVALUABLE UNEVALUABLE
659_bMa PTPRK RSPO3 chr6 128445654 chr6 127135015 BND CALL_659_bMa_4 FP call 0.0067 0 0 0 3 hg19 6 128766799.0 6 127456160.0 0 0 UNEVALUABLE UNEVALUABLE
659_bMa INHBA DOCK4 chr7 41685448 chr7 112174899 BND CALL_659_bMa_5 FP call 0.0 0 0 0 5 hg19 7 41725046.0 7 111814954.0 0 0 UNEVALUABLE UNEVALUABLE
659_bMa intergenic(SHH,RNF32) NTRK2 chr7 156571984 chr9 84912392 BND CALL_659_bMa_6 FP call 0.0 0 0 1 8 hg19 7 156364678.0 9 87527307.0 0 1 UNEVALUABLE UNEVALUABLE
659_bMa NRG1 intergenic(TENM4,FAM181B) chr8 32734682 chr11 81076248 BND CALL_659_bMa_7 FP call 0.0093 0 0 1 0 hg19 8 32592200.0 11 80787291.0 0 0 UNEVALUABLE UNEVALUABLE
659_bMa intergenic(SNTG1,PXDNL) PPME1 chr8 50903498 chr11 74230336 BND CALL_659_bMa_8 TP call 0.4463 0 0 10 558 hg19 8 51816058.0 11 73941381.0 0 10 UNEVALUABLE UNEVALUABLE
659_bMa intergenic(KLF10,AZIN1) EWSR1 chr8 102730732 chr22 29297649 BND CALL_659_bMa_9 FP call 0.0 0 0 3 5393 hg19 8 103742960.0 22 29693639.0 0 3 UNEVALUABLE UNEVALUABLE
659_bMa intergenic(KDM4C,DMAC1) BCL2 chr9 7529904 chr18 63128465 BND CALL_659_bMa_10 FP call 0.0 0 0 0 5244 hg19 9 7529904.0 18 60795698.0 0 0 UNEVALUABLE UNEVALUABLE
659_bMa MALRD1 ATP8B3 chr10 19312364 chr19 1795893 BND CALL_659_bMa_11 FP call 0.0 0 0 0 1163 hg19 10 19601293.0 19 1795892.0 0 0 UNEVALUABLE UNEVALUABLE
659_bMa RNLS QKI chr10 88463204 chr6 163478878 BND CALL_659_bMa_12 FP call 0.0 0 0 0 730 hg19 10 90222961.0 6 163899910.0 0 0 UNEVALUABLE UNEVALUABLE
659_bMa intergenic(METTL15,KCNA4) BCL2 chr11 29107862 chr18 63128464 BND CALL_659_bMa_13 FP call 0.0 0 0 1 5245 hg19 11 29129409.0 18 60795697.0 0 1 UNEVALUABLE UNEVALUABLE
659_bMa ENSG00000287725 PPME1 chr11 69079870 chr11 74220681 DEL CALL_659_bMa_14 FP call 0.0173 0 0 280 1 hg19 11 68847338.0 11 73931726.0 0 1 UNEVALUABLE UNEVALUABLE
659_bMa KLHL35 intergenic(CCDC90B,DLG2) chr11 75429993 chr11 83335124 DEL CALL_659_bMa_15 TP call 0.9187 0 0 1286 1 hg19 11 75141038.0 11 83046167.0 0 1 UNEVALUABLE UNEVALUABLE
659_bMa MRE11 intergenic(HID1,CDR2L) chr11 94416962 chr17 74979131 BND CALL_659_bMa_16 FP call 0.0001 0 0 15 5 hg19 11 94150128.0 17 72975226.0 0 5 UNEVALUABLE UNEVALUABLE
659_bMa intergenic(TMC3,MEX3B) CCDC83 chr15 82021573 chr11 85899007 BND CALL_659_bMa_17 FP call 0.0112 0 0 4 201 hg19 15 82313914.0 11 85610050.0 0 4 UNEVALUABLE UNEVALUABLE
659_bMa BCL2 intergenic(PABPC4L,PCDH18) chr18 63128464 chr4 135560589 BND CALL_659_bMa_18 FP call 0.0 0 0 5245 0 hg19 18 60795697.0 4 136481744.0 0 0 UNEVALUABLE UNEVALUABLE
659_bMa BCL2 intergenic(MAT2B,TENM2) chr18 63128464 chr5 165093364 BND CALL_659_bMa_19 FP call 0.0 0 0 5245 0 hg19 18 60795697.0 5 164520370.0 0 0 UNEVALUABLE UNEVALUABLE
659_bMa PABPC1L PPM1D chr20 44935392 chr17 60606351 BND CALL_659_bMa_20 FP call 0.0001 0 0 329 2 hg19 20 43564033.0 17 58683712.0 0 2 UNEVALUABLE UNEVALUABLE
659_bMa BACH1 intergenic(RBMS3,TGFBR2) chr21 29537828 chr3 30241620 BND CALL_659_bMa_21 FP call 0.0 0 0 283 0 hg19 21 30910149.0 3 30283111.0 0 0 UNEVALUABLE UNEVALUABLE
659_bMa intergenic(SNTG1,PXDNL) PPME1 chr8 50903497 chr11 74230335 TRANSLOCATION TRUTH_659_bMa_22 TRUTH truth 41.0 0 0 10 558 hg19 8 51816057.0 11 73941380.0 0 10 UNEVALUABLE UNEVALUABLE
659_bMa KLHL35 intergenic(CCDC90B,DLG2) chr11 75429992 chr11 83335123 DELETION TRUTH_659_bMa_23 TRUTH truth 22.0 0 0 1285 1 hg19 11 75141037.0 11 83046166.0 0 1 UNEVALUABLE UNEVALUABLE
659_bTo intergenic(BLACAT1,CDK18) TP53BP2 chr1 205489101 chr1 223814293 DEL CALL_659_bTo_0 FP call 0.0006 0 0 0 272 hg19 1 205458229.0 1 224001995.0 0 0 UNEVALUABLE UNEVALUABLE
659_bTo ETNPPL ENAM chr4 108753464 chr4 70643854 BND CALL_659_bTo_1 FP call 0.0107 0 0 107 1374 hg19 4 109674620.0 4 71509571.0 0 107 EVALUABLE BAM_REFUTED
659_bTo intergenic(FZD8,ANKRD30A) NAMPT chr10 36522936 chr7 106250858 BND CALL_659_bTo_2 FP call 0.0 0 0 886 182 hg19 10 36811864.0 7 105891304.0 0 182 EVALUABLE BAM_REFUTED
659_bTo ERAL1 HLA-B chr17 28857485 chr6 31355828 BND CALL_659_bTo_3 FP call 0.0 0 0 234 5638 hg19 17 27184503.0 6 31323605.0 0 234 EVALUABLE BAM_REFUTED
659_bXS intergenic(TRIP13,NKD2) PTPN6 chr5 942553 chr12 6960857 BND CALL_659_bXS_0 FP call 0.0001 0 0 2 1254 hg19 5 942668.0 12 7070020.0 0 2 UNEVALUABLE UNEVALUABLE
659_bXS intergenic(TERT,CLPTM1L) NOP2 chr5 1295703 chr12 6562935 BND CALL_659_bXS_1 FP call 0.9936 0 0 3453 713 hg19 5 1295818.0 12 6672101.0 0 713 EVALUABLE BAM_REFUTED
659_bXS intergenic(MTRR,SEMA5A) DNAH5 chr5 8394370 chr5 13766157 DUP CALL_659_bXS_2 TP call 0.9779 0 0 0 672 hg19 5 8394483.0 5 13766266.0 0 0 UNEVALUABLE UNEVALUABLE
659_bXS intergenic(MTMR12,ZFR) FGF6 chr5 32353676 chr12 4445712 BND CALL_659_bXS_3 FP call 0.008 0 0 0 2401 hg19 5 32353782.0 12 4554878.0 0 0 UNEVALUABLE UNEVALUABLE
659_bXS MRPS10 TEX2 chr6 42212390 chr17 64213680 BND CALL_659_bXS_4 FP call 0.0012 0 0 130 2589 hg19 6 42180128.0 17 62291040.0 0 130 EVALUABLE BAM_REFUTED
659_bXS POU3F2 intergenic(GRIK2,HACE1) chr6 98834888 chr6 102741808 DUP CALL_659_bXS_5 TP call 0.9977 0 0 1822 1 hg19 6 99282764.0 6 103189683.0 0 1 UNEVALUABLE UNEVALUABLE
659_bXS PDSS2 CCN2 chr6 107346252 chr6 131950964 DEL CALL_659_bXS_6 TP call 0.7046 0 0 0 1236 hg19 6 107667456.0 6 132272104.0 0 0 UNEVALUABLE UNEVALUABLE
659_bXS ENSG00000282218 PTPRK chr6 117325676 chr6 128373836 DUP CALL_659_bXS_7 TP call 0.0024 0 0 4426 0 hg19 6 117646839.0 6 128694981.0 0 0 UNEVALUABLE UNEVALUABLE
659_bXS CTAGE9 TBC1D32 chr6 131709916 chr6 121128792 BND CALL_659_bXS_8 FP call 0.024 0 0 2215 0 hg19 6 132031056.0 6 121449938.0 0 0 UNEVALUABLE UNEVALUABLE
659_bXS intergenic(SGK1,ALDH8A1) RSPO3 chr6 134500889 chr6 127127658 BND CALL_659_bXS_9 FP call 0.0 0 0 1 0 hg19 6 134822027.0 6 127448803.0 0 0 UNEVALUABLE UNEVALUABLE
659_bXS intergenic(ERMARD,DLL1) AEBP2 chr6 170048211 chr12 19440194 BND CALL_659_bXS_10 TP call 0.0135 0 0 1 3617 hg19 6 170363435.0 12 19593128.0 0 1 UNEVALUABLE UNEVALUABLE
659_bXS DEFA4 SLCO1B1 chr8 6936830 chr12 21205509 BND CALL_659_bXS_11 FP call 0.4222 0 0 618 240 hg19 8 6794352.0 12 21358443.0 0 240 EVALUABLE BAM_REFUTED
659_bXS ENSG00000285238 intergenic(ENO2,ATN1) chr12 6583211 chr12 6923926 DEL CALL_659_bXS_12 TP call 0.9871 0 0 3103 0 hg19 12 6692377.0 12 7033089.0 0 0 UNEVALUABLE UNEVALUABLE
659_bXS P3H3 RERGL chr12 6837474 chr12 18162560 BND CALL_659_bXS_13 FP call 0.9228 0 0 1633 0 hg19 12 6946638.0 12 18315494.0 0 0 UNEVALUABLE UNEVALUABLE
659_bXS PTPN6 intergenic(LMO3,RERGL) chr12 6960856 chr12 17520441 DEL CALL_659_bXS_14 TP call 0.9435 0 0 1255 0 hg19 12 7070019.0 12 17673375.0 0 0 UNEVALUABLE UNEVALUABLE
659_bXS KLRB1 ETV6 chr12 9599719 chr12 11775538 DUP CALL_659_bXS_15 FP call 0.5204 0 0 162 0 hg19 12 9752315.0 12 11928472.0 0 0 UNEVALUABLE UNEVALUABLE
659_bXS ENSG00000269179 SIGLEC11 chr19 49939983 chr19 49960780 DUP CALL_659_bXS_16 FP call 0.1225 0 0 4 1591 hg19 19 50443240.0 19 50464037.0 0 4 UNEVALUABLE UNEVALUABLE
659_bXS intergenic(MTRR,SEMA5A) DNAH5 chr5 8394369 chr5 13766156 DUPLICATION TRUTH_659_bXS_17 TRUTH truth 141.0 0 0 0 672 hg19 5 8394482.0 5 13766265.0 0 0 UNEVALUABLE UNEVALUABLE
659_bXS POU3F2 intergenic(GRIK2,HACE1) chr6 98834887 chr6 102741807 DUPLICATION TRUTH_659_bXS_18 TRUTH truth 117.0 0 0 1821 1 hg19 6 99282763.0 6 103189682.0 0 1 UNEVALUABLE UNEVALUABLE
659_bXS PDSS2 CCN2 chr6 107346251 chr6 131950963 DELETION TRUTH_659_bXS_19 TRUTH truth 49.0 0 0 0 1241 hg19 6 107667455.0 6 132272103.0 0 0 UNEVALUABLE UNEVALUABLE
659_bXS ROS1 PTPRK chr6 117325675 chr6 128373835 DUPLICATION TRUTH_659_bXS_20 TRUTH truth 27.0 0 0 4429 0 hg19 6 117646838.0 6 128694980.0 0 0 UNEVALUABLE UNEVALUABLE
659_bXS intergenic(ERMARD,DLL1) AEBP2 chr6 170048210 chr12 19440193 TRANSLOCATION TRUTH_659_bXS_21 TRUTH truth 75.0 0 0 1 3613 hg19 6 170363434.0 12 19593127.0 0 1 UNEVALUABLE UNEVALUABLE
659_bXS CHD4 intergenic(ENO2,ATN1) chr12 6583210 chr12 6923925 DELETION TRUTH_659_bXS_22 TRUTH truth 151.0 0 0 3104 0 hg19 12 6692376.0 12 7033088.0 0 0 UNEVALUABLE UNEVALUABLE
659_bXS PTPN6 intergenic(LMO3,RERGL) chr12 6960855 chr12 17520440 DELETION TRUTH_659_bXS_23 TRUTH truth 114.0 0 0 1257 0 hg19 12 7070018.0 12 17673374.0 0 0 UNEVALUABLE UNEVALUABLE
1173_CH0 intergenic(PRRC1,CTXN3) FANCA chr5 127592682 chr16 89778842 BND CALL_1173_CH0_0 FP call 0.0 0 0 3 1771 hg19 5 126928374.0 16 89845250.0 0 3 UNEVALUABLE UNEVALUABLE
1173_CH0 ADGRB3 MYB chr6 69343788 chr6 135216013 DUP CALL_1173_CH0_1 TP call 0.9912 0 0 0 6830 hg19 6 70053680.0 6 135537151.0 0 0 UNEVALUABLE UNEVALUABLE
1173_CH0 MYB SMAP1 chr6 135216243 chr6 70690084 BND CALL_1173_CH0_2 TP_DUP call 0.9889 0 0 6297 11 hg19 6 135537381.0 6 71399787.0 0 11 UNEVALUABLE UNEVALUABLE
1173_CH0 intergenic(FZD8,ANKRD30A) NAMPT chr10 36522945 chr7 106250839 BND CALL_1173_CH0_3 FP call 0.0 0 0 1034 217 hg19 10 36811873.0 7 105891285.0 0 217 EVALUABLE BAM_REFUTED
1173_CH0 GTF2F1 SCUBE1 chr19 6383314 chr22 43203987 BND CALL_1173_CH0_4 TP call 0.9995 0 0 548 573 hg19 19 6383325.0 22 43599993.0 0 548 EVALUABLE BAM_REFUTED
1173_CH0 VPREB1 MYO18B chr22 22245258 chr22 25761591 BND CALL_1173_CH0_5 TP call 0.9668 0 0 1965 322 hg19 22 22599670.0 22 26157558.0 0 322 EVALUABLE BAM_REFUTED
1173_CH0 intergenic(VPREB1,ZNF280B) ENSG00000285589 chr22 22383647 chr19 12679543 BND CALL_1173_CH0_6 TP_DUP call 0.8246 0 0 0 1202 hg19 22 22738016.0 19 12790357.0 0 0 UNEVALUABLE UNEVALUABLE
1173_CH0 ADGRB3 MYB chr6 69343787 chr6 135216012 DUPLICATION TRUTH_1173_CH0_7 TRUTH truth 190.0 0 0 0 6839 hg19 6 70053679.0 6 135537150.0 0 0 UNEVALUABLE UNEVALUABLE
1173_CH0 SMAP1 MYB chr6 70690082 chr6 135216241 INVERSION TRUTH_1173_CH0_8 TRUTH truth 177.0 0 0 11 6307 hg19 6 71399785.0 6 135537379.0 0 11 UNEVALUABLE UNEVALUABLE
1173_CH0 GTF2F1 SCUBE1 chr19 6383313 chr22 43203986 TRANSLOCATION TRUTH_1173_CH0_9 TRUTH truth 81.0 0 0 548 573 hg19 19 6383324.0 22 43599992.0 0 548 EVALUABLE BAM_REFUTED
1173_CH0 ENSG00000285589 intergenic(VPREB1,ZNF280B) chr19 12679542 chr22 22383646 TRANSLOCATION TRUTH_1173_CH0_10 TRUTH truth 26.0 0 0 1201 0 hg19 19 12790356.0 22 22738015.0 0 0 UNEVALUABLE UNEVALUABLE
1173_CH0 VPREB1 MYO18B chr22 22245257 chr22 25761590 INVERSION TRUTH_1173_CH0_11 TRUTH truth 203.0 0 0 1965 322 hg19 22 22599669.0 22 26157557.0 0 322 EVALUABLE BAM_REFUTED
1173_J3R intergenic(LCORL,SLIT2) SLIT2 chr4 20250782 chr4 20252548 DEL CALL_1173_J3R_0 FP call 0.634 0 0 2 0 hg19 4 20252405.0 4 20254171.0 0 0 UNEVALUABLE UNEVALUABLE
1173_J3R FLOT1 intergenic(DDR1,GTF2H4) chr6 30741826 chr6 30907501 DEL CALL_1173_J3R_1 FP call 0.0425 0 0 833 4 hg19 6 30709603.0 6 30875278.0 0 4 UNEVALUABLE UNEVALUABLE
1173_J3R intergenic(ACTL6B,GNB2) EPO chr7 100662827 chr7 100722765 DUP CALL_1173_J3R_2 TP call 0.9767 0 0 7 954 hg19 7 100260450.0 7 100320388.0 0 7 UNEVALUABLE UNEVALUABLE
1173_J3R SPATA31A1 SPATA31A6 chr9 39358815 chr9 42186819 DEL CALL_1173_J3R_3 FP call 0.0 0 0 10 519 hg19 9 39358812.0 9 40703460.0 0 10 UNEVALUABLE UNEVALUABLE
1173_J3R RNF34 SETD1B chr12 121425721 chr12 121827524 DUP CALL_1173_J3R_4 TP call 0.9565 0 0 12 1179 hg19 12 121863524.0 12 122265430.0 0 12 UNEVALUABLE UNEVALUABLE
1173_J3R PCNT PTPRT chr21 46416320 chr20 42692123 BND CALL_1173_J3R_5 TP_DUP call 0.9949 0 0 1368 3 hg19 21 47836234.0 20 41320763.0 0 3 UNEVALUABLE UNEVALUABLE
1173_J3R intergenic(ACTL6B,GNB2) EPO chr7 100662826 chr7 100722764 DUPLICATION TRUTH_1173_J3R_6 TRUTH truth 40.0 0 0 7 954 hg19 7 100260449.0 7 100320387.0 0 7 UNEVALUABLE UNEVALUABLE
1173_J3R RNF34 SETD1B chr12 121425720 chr12 121827523 DUPLICATION TRUTH_1173_J3R_7 TRUTH truth 49.0 0 0 12 1173 hg19 12 121863523.0 12 122265429.0 0 12 UNEVALUABLE UNEVALUABLE
1173_J3R PTPRT PCNT chr20 42692122 chr21 46416319 TRANSLOCATION TRUTH_1173_J3R_8 TRUTH truth 71.0 0 0 3 1366 hg19 20 41320762.0 21 47836233.0 0 3 UNEVALUABLE UNEVALUABLE
1173_KQG intergenic(SETD2,KIF9) ENSG00000256966 chr3 47206359 chr9 37512689 BND CALL_1173_KQG_0 TP call 0.9945 0 0 1 572 hg19 3 47247849.0 9 37512686.0 0 1 UNEVALUABLE UNEVALUABLE
1173_KQG intergenic(SETD2,KIF9) ENSG00000256966 chr3 47206358 chr9 37512688 TRANSLOCATION TRUTH_1173_KQG_1 TRUTH truth 90.0 0 0 1 572 hg19 3 47247848.0 9 37512685.0 0 1 UNEVALUABLE UNEVALUABLE
1173_PCB SLC50A1 intergenic(DPM3,KRTCAP2) chr1 155136830 chr1 155146564 DUP CALL_1173_PCB_0 FP call 0.964 0 0 893 2 hg19 1 155109306.0 1 155119040.0 0 2 UNEVALUABLE UNEVALUABLE
1173_PCB intergenic(CHSY3,HINT1) FBXO11 chr5 130868242 chr2 47902523 BND CALL_1173_PCB_1 FP call 0.0007 0 0 2 0 hg19 5 130203935.0 2 48129662.0 0 0 UNEVALUABLE UNEVALUABLE
1173_PCB FKBP5 ARMC12 chr6 35718545 chr6 35748742 DUP CALL_1173_PCB_2 TP call 0.0913 0 0 0 945 hg19 6 35686322.0 6 35716519.0 0 0 UNEVALUABLE UNEVALUABLE
1173_PCB intergenic(RNGTT,PNRC1) PNRC1 chr6 89074329 chr6 89081935 DUP CALL_1173_PCB_3 FP call 0.8193 0 0 0 139 hg19 6 89784048.0 6 89791654.0 0 0 UNEVALUABLE UNEVALUABLE
1173_PCB intergenic(EPB41L2,AKAP7) ARHGEF38 chr6 131135271 chr4 105677816 BND CALL_1173_PCB_4 FP call 0.0 0 0 158 451 hg19 6 131456411.0 4 106598973.0 0 158 EVALUABLE BAM_REFUTED
1173_PCB intergenic(GATA3,CELF2) ETV1 chr10 10790435 chr7 13920016 BND CALL_1173_PCB_5 FP call 0.0 0 0 0 0 hg19 10 10832398.0 7 13959641.0 0 0 UNEVALUABLE UNEVALUABLE
1173_PCB NUP160 intergenic(NUP160,PTPRJ) chr11 47788571 chr11 47852372 DEL CALL_1173_PCB_6 TP call 0.8222 0 0 803 0 hg19 11 47810123.0 11 47873924.0 0 0 UNEVALUABLE UNEVALUABLE
1173_PCB intergenic(ARRB1,RPS3) RPS3 chr11 75392787 chr11 75404093 DUP CALL_1173_PCB_7 FP call 0.016 0 0 13 802 hg19 11 75103831.0 11 75115137.0 0 13 UNEVALUABLE UNEVALUABLE
1173_PCB IRAG2 FGFR1OP2 chr12 25054414 chr12 26951899 DEL CALL_1173_PCB_8 FP call 0.0108 0 0 0 0 hg19 12 25207348.0 12 27104832.0 0 0 UNEVALUABLE UNEVALUABLE
1173_PCB MZT1 BORA chr13 72719508 chr13 72728926 DEL CALL_1173_PCB_9 FP call 0.0 0 0 334 359 hg19 13 73293646.0 13 73303064.0 0 334 EVALUABLE BAM_REFUTED
1173_PCB GPC6 IGF1 chr13 94277437 chr12 102398235 BND CALL_1173_PCB_10 FP call 0.0 0 0 2 0 hg19 13 94929691.0 12 102792013.0 0 0 UNEVALUABLE UNEVALUABLE
1173_PCB intergenic(FBXO33,LRFN5) EPHB1 chr14 40114975 chr3 134795468 BND CALL_1173_PCB_11 FP call 0.0 0 0 8 753 hg19 14 40584179.0 3 134514310.0 0 8 UNEVALUABLE UNEVALUABLE
1173_PCB intergenic(RAD51B,ZFP36L1) ZFP36L1 chr14 68737252 chr14 68796005 DUP CALL_1173_PCB_12 FP call 0.0196 0 0 0 887 hg19 14 69203969.0 14 69262722.0 0 0 UNEVALUABLE UNEVALUABLE
1173_PCB RPL4 NLGN1 chr15 66502688 chr3 173921900 BND CALL_1173_PCB_13 FP call 0.0038 0 0 796 0 hg19 15 66795026.0 3 173639690.0 0 0 UNEVALUABLE UNEVALUABLE
1173_PCB IRF8 intergenic(IRF8,FOXF1) chr16 85921698 chr16 85935036 DUP CALL_1173_PCB_14 FP call 0.3732 0 0 562 0 hg19 16 85955304.0 16 85968642.0 0 0 UNEVALUABLE UNEVALUABLE
1173_PCB intergenic(PVALB,NCF4) CUX2 chr22 36853624 chr12 111348287 BND CALL_1173_PCB_15 FP call 0.0001 0 0 7 1796 hg19 22 37249666.0 12 111786091.0 0 7 UNEVALUABLE UNEVALUABLE
1173_PCB SATB2 ARGFX chr2 199308808 chr3 121581805 TRANSLOCATION TRUTH_1173_PCB_16 TRUTH truth 12.0 0 0 717 3 hg19 2 200173531.0 3 121300652.0 0 3 UNEVALUABLE UNEVALUABLE
1173_PCB FKBP5 ARMC12 chr6 35718544 chr6 35748741 DUPLICATION TRUTH_1173_PCB_17 TRUTH truth 11.0 0 0 0 945 hg19 6 35686321.0 6 35716518.0 0 0 UNEVALUABLE UNEVALUABLE
1173_PCB CUBN TRDMT1 chr10 17045180 chr10 17171475 DELETION TRUTH_1173_PCB_18 TRUTH truth 9.0 0 0 614 7 hg19 10 17087179.0 10 17213474.0 0 7 UNEVALUABLE UNEVALUABLE
1173_PCB NUP160 intergenic(NUP160,PTPRJ) chr11 47788570 chr11 47852371 DELETION TRUTH_1173_PCB_19 TRUTH truth 3.0 0 0 804 0 hg19 11 47810122.0 11 47873923.0 0 0 UNEVALUABLE UNEVALUABLE
659_bGc NLGN1 ENSG00000264058 chr3 174175214 chr17 40644533 BND CALL_659_bGc_0 FP call 0.0 0 0 0 0 hg19 3 173893004.0 17 38800785.0 0 0 UNEVALUABLE UNEVALUABLE
659_bGc intergenic(PRIM2,KHDRBS2) RET chr6 58381389 chr10 43115776 BND CALL_659_bGc_1 TP call 0.2073 0 0 0 8525 hg19 6 58707667.0 10 43611224.0 0 0 UNEVALUABLE UNEVALUABLE
659_bGc KIF5B RET chr10 32027083 chr10 43115777 BND CALL_659_bGc_2 TP call 0.0089 0 0 1 8527 hg19 10 32316011.0 10 43611225.0 0 1 UNEVALUABLE UNEVALUABLE
659_bGc intergenic(GRM5,TYR) PPARG chr11 89111954 chr3 12330395 BND CALL_659_bGc_3 FP call 0.0 0 0 0 0 hg19 11 88845122.0 3 12371894.0 0 0 UNEVALUABLE UNEVALUABLE
659_bGc intergenic(PRIM2,KHDRBS2) RET chr6 58381388 chr10 43115774 TRANSLOCATION TRUTH_659_bGc_4 TRUTH truth 32.0 0 0 0 8533 hg19 6 58707666.0 10 43611222.0 0 0 UNEVALUABLE UNEVALUABLE
659_bGc KIF5B RET chr10 32027076 chr10 43115774 INVERSION TRUTH_659_bGc_5 TRUTH truth 49.0 0 0 1 8533 hg19 10 32316004.0 10 43611222.0 0 1 UNEVALUABLE UNEVALUABLE
659_bGd intergenic(AGO4,AGO1) NTRK3 chr1 35866936 chr15 87941486 BND CALL_659_bGd_0 FP call 0.0 0 0 9 17 hg19 1.0 36332537.0 15 88484717.0 0 9 UNEVALUABLE UNEVALUABLE
659_bGd ARHGAP15 LATS1 chr2 143581372 chr6 149661122 BND CALL_659_bGd_1 FP call 0.0 0 0 0 34 hg19 2.0 144338941.0 6 149982258.0 0 0 UNEVALUABLE UNEVALUABLE
659_bGd intergenic(EYS,ADGRB3) EPAS1 chr6 68502155 chr2 46385095 BND CALL_659_bGd_2 FP call 0.0 0 0 2 617 hg19 6.0 69212047.0 2 46612234.0 0 2 UNEVALUABLE UNEVALUABLE
659_bGd intergenic(TARP,AMPH) AR chr7 38364501 chrX 67723238 BND CALL_659_bGd_3 FP call 0.0 0 0 0 2280 hg19 7.0 38404102.0 X 66943080.0 0 0 UNEVALUABLE UNEVALUABLE
659_bGd intergenic(ZNF92,VKORC1L1) PPARG chr7 65827067 chr3 12368180 BND CALL_659_bGd_4 FP call 0.0 0 0 6 9 hg19 7.0 65292054.0 3 12409679.0 0 6 UNEVALUABLE UNEVALUABLE
659_bGd ZNF703 ZFPM2 chr8 37698139 chr8 105054496 DUP CALL_659_bGd_5 TP call 0.4608 0 0 8360 0 hg19 8.0 37555657.0 8 106066724.0 0 0 UNEVALUABLE UNEVALUABLE
659_bGd KDM4C RUNX1 chr9 6856540 chr21 34789602 BND CALL_659_bGd_6 FP call 0.0 0 0 11 0 hg19 9.0 6856540.0 21 36161899.0 0 0 UNEVALUABLE UNEVALUABLE
659_bGd intergenic(GATA3,CELF2) FGFR1 chr10 9157026 chr8 38436460 BND CALL_659_bGd_7 FP call 0.0047 0 0 17 0 hg19 10.0 9198989.0 8 38293978.0 0 0 UNEVALUABLE UNEVALUABLE
659_bGd BEND7 NTRK3 chr10 13462205 chr15 88048210 BND CALL_659_bGd_8 FP call 0.4076 0 0 3 0 hg19 10.0 13504205.0 15 88591441.0 0 0 UNEVALUABLE UNEVALUABLE
659_bGd intergenic(BEND7,PRPF18) FRMD4A chr10 13572647 chr10 13656933 DUP CALL_659_bGd_9 FP call 0.0539 0 0 1 1849 hg19 10.0 13614647.0 10 13698933.0 0 1 UNEVALUABLE UNEVALUABLE
659_bGd CUBN intergenic(NR2F2,ARRDC4) chr10 16851294 chr15 96878511 BND CALL_659_bGd_10 TP call 0.166 0 0 375 0 hg19 10.0 16893293.0 15 97421741.0 0 0 UNEVALUABLE UNEVALUABLE
659_bGd MALRD1 EPHB1 chr10 19700060 chr3 134795373 BND CALL_659_bGd_11 FP call 0.0 0 0 2 709 hg19 10.0 19988989.0 3 134514215.0 0 2 UNEVALUABLE UNEVALUABLE
659_bGd FGF4 RNH1 chr11 69775336 chr11 507081 BND CALL_659_bGd_12 FP call 0.0 0 0 1876 0 hg19 11.0 69590104.0 11 507081.0 0 0 UNEVALUABLE UNEVALUABLE
659_bGd IGF1 intergenic(BMPER,NPSR1) chr12 102399096 chr7 34167724 BND CALL_659_bGd_13 FP call 0.0 0 0 2 2 hg19 12.0 102792874.0 7 34207336.0 0 2 UNEVALUABLE UNEVALUABLE
659_bGd NEO1 NTRK3 chr15 73193109 chr15 88077380 BND CALL_659_bGd_14 FP call 0.0001 0 0 0 6 hg19 15.0 73485450.0 15 88620611.0 0 0 UNEVALUABLE UNEVALUABLE
659_bGd REC114 NTRK3 chr15 73497674 chr15 87989128 DUP CALL_659_bGd_15 FP call 0.0007 0 0 0 5 hg19 15.0 73790015.0 15 88532359.0 0 0 UNEVALUABLE UNEVALUABLE
659_bGd NTRK3 intergenic(NR2F2,ARRDC4) chr15 88003058 chr15 96511911 DUP CALL_659_bGd_16 FP call 0.1691 0 0 0 0 hg19 15.0 88546289.0 15 97055141.0 0 0 UNEVALUABLE UNEVALUABLE
659_bGd IDH2 CEP192 chr15 90083083 chr18 13031232 BND CALL_659_bGd_17 FP call 0.0002 0 0 10 23 hg19 15.0 90626315.0 18 13031231.0 0 10 UNEVALUABLE UNEVALUABLE
659_bGd SV2B NTRK3 chr15 91185884 chr15 88014598 BND CALL_659_bGd_18 FP call 0.0062 0 0 0 1 hg19 15.0 91729114.0 15 88557829.0 0 0 UNEVALUABLE UNEVALUABLE
659_bGd WIPF2 RARA chr17 40229580 chr17 40337366 BND CALL_659_bGd_19 TP call 0.9897 0 0 59 6726 hg19 17.0 38385832.0 17 38493618.0 0 59 EVALUABLE BAM_REFUTED
659_bGd intergenic(.,.) MUC6 chr11_KI270902v1_alt 82088 chr11 1017152 BND CALL_659_bGd_20 FP call 0.0001 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_bGd ZNF703 ZFPM2 chr8 37698138 chr8 105054495 DUPLICATION TRUTH_659_bGd_21 TRUTH truth 232.0 0 0 8363 0 hg19 8.0 37555656.0 8 106066723.0 0 0 UNEVALUABLE UNEVALUABLE
659_bGd ZMYND11 intergenic(MCTP2,NR2F2) chr10 221308 chr15 95640778 TRANSLOCATION TRUTH_659_bGd_22 TRUTH truth 25.0 0 0 511 0 hg19 10.0 267248.0 15 96184007.0 0 0 UNEVALUABLE UNEVALUABLE
659_bGd CUBN intergenic(NR2F2,ARRDC4) chr10 16851293 chr15 96878508 TRANSLOCATION TRUTH_659_bGd_23 TRUTH truth 30.0 0 0 375 0 hg19 10.0 16893292.0 15 97421738.0 0 0 UNEVALUABLE UNEVALUABLE
659_bGd WIPF2 RARA chr17 40229579 chr17 40337365 INVERSION TRUTH_659_bGd_24 TRUTH truth 356.0 0 0 59 6712 hg19 17.0 38385831.0 17 38493617.0 0 59 EVALUABLE BAM_REFUTED
659_bR4 EML4 ALK chr2 42299249 chr2 29224603 BND CALL_659_bR4_0 TP_DUP call 0.9984 0 0 0 6620 hg19 2 42526389.0 2 29447469.0 0 0 UNEVALUABLE UNEVALUABLE
659_bR4 PDE1A IRS2 chr2 182394432 chr13 109784145 BND CALL_659_bR4_1 FP call 0.8992 0 0 0 10143 hg19 2 183259159.0 13 110436492.0 0 0 UNEVALUABLE UNEVALUABLE
659_bR4 HLA-F HLA-C chr6 29725218 chr6 31270228 BND CALL_659_bR4_2 FP call 0.0 0 0 2046 4464 hg19 6 29692995.0 6 31238005.0 0 2046 EVALUABLE BAM_REFUTED
659_bR4 HLA-B HLA-G chr6 31356263 chr6 29828995 BND CALL_659_bR4_3 FP call 0.0 0 0 6588 1592 hg19 6 31324040.0 6 29796772.0 0 1592 EVALUABLE BAM_REFUTED
659_bR4 PRKACG ENSG00000285130 chr9 69013640 chr9 69098191 DUP CALL_659_bR4_4 TP call 0.9938 0 0 2490 6 hg19 9 71628556.0 9 71713107.0 0 6 UNEVALUABLE UNEVALUABLE
659_bR4 ALK EML4 chr2 29224600 chr2 42299250 INVERSION TRUTH_659_bR4_5 TRUTH truth 132.0 0 0 6615 0 hg19 2 29447466.0 2 42526390.0 0 0 UNEVALUABLE UNEVALUABLE
659_bR4 MAST4 intergenic(ADCYAP1,METTL4) chr5 67165039 chr18 1864275 TRANSLOCATION TRUTH_659_bR4_6 TRUTH truth 36.0 0 0 3043 2 hg19 5 66460867.0 18 1864276.0 0 2 UNEVALUABLE UNEVALUABLE
659_bR4 PRKACG ENSG00000285130 chr9 69013639 chr9 69098190 DUPLICATION TRUTH_659_bR4_7 TRUTH truth 86.0 0 0 2491 6 hg19 9 71628555.0 9 71713106.0 0 6 UNEVALUABLE UNEVALUABLE
659_bjq LMNA NTRK1 chr1 156130762 chr1 156874272 DEL CALL_659_bjq_0 TP call 0.9985 0 0 588 11314 hg19 1 156100553.0 1 156844064.0 0 588 EVALUABLE BAM_REFUTED
659_bjq LRP1B ABCB1 chr2 141105260 chr7 87550475 BND CALL_659_bjq_1 FP call 0.0 0 0 0 1317 hg19 2 141862829.0 7 87179791.0 0 0 UNEVALUABLE UNEVALUABLE
659_bjq PPARG WDR7 chr3 12368211 chr18 56795683 BND CALL_659_bjq_2 FP call 0.0004 0 0 4 0 hg19 3 12409710.0 18 54462914.0 0 0 UNEVALUABLE UNEVALUABLE
659_bjq SASH1 intergenic(SASH1,UST) chr6 148519557 chr6 148556877 DUP CALL_659_bjq_3 FP call 0.0022 0 0 807 0 hg19 6 148840693.0 6 148878013.0 0 0 UNEVALUABLE UNEVALUABLE
659_bjq NOX3 NPAP1 chr6 155414554 chr15 24677248 BND CALL_659_bjq_4 FP call 0.0068 0 0 4 2459 hg19 6 155735688.0 15 24922395.0 0 4 UNEVALUABLE UNEVALUABLE
659_bjq intergenic(ETS2,PSMG1) ETS2 chr21 38825077 chr21 38819736 BND CALL_659_bjq_5 FP call 0.495 0 0 0 680 hg19 21 40197001.0 21 40191660.0 0 0 UNEVALUABLE UNEVALUABLE
659_bjq LMNA NTRK1 chr1 156130761 chr1 156874271 DELETION TRUTH_659_bjq_6 TRUTH truth 268.0 0 0 588 11317 hg19 1 156100552.0 1 156844063.0 0 588 EVALUABLE BAM_REFUTED
659_cit CDC14A AMPD2 chr1 100412321 chr1 109625635 BND CALL_659_cit_0 FP call 0.0038 0 0 1 1872 hg19 1 100877877.0 1 110168257.0 0 1 UNEVALUABLE UNEVALUABLE
659_cit CAPZA1 KCND3 chr1 112659078 chr1 111982633 BND CALL_659_cit_1 TP_DUP call 0.9622 0 0 190 1873 hg19 1 113201700.0 1 112525255.0 0 190 EVALUABLE BAM_REFUTED
659_cit PBXIP1 DCST2 chr1 154955108 chr1 155033463 DUP CALL_659_cit_2 TP call 0.3266 0 0 207 1800 hg19 1 154927584.0 1 155005939.0 0 207 EVALUABLE BAM_REFUTED
659_cit intergenic(TBC1D7,GFOD1) HLA-A chr6 13356270 chr6 29942809 DEL CALL_659_cit_3 FP call 0.0 0 0 0 6899 hg19 6 13356502.0 6 29910586.0 0 0 UNEVALUABLE UNEVALUABLE
659_cit HLA-B intergenic(KLF6,AKR1E2) chr6 31356450 chr10 3932081 BND CALL_659_cit_4 FP call 0.0004 0 0 6073 1 hg19 6 31324227.0 10 3974273.0 0 1 UNEVALUABLE UNEVALUABLE
659_cit MYB intergenic(MYB,AHI1) chr6 135190199 chr6 135277252 DUP CALL_659_cit_5 TP call 0.582 0 0 1860 9 hg19 6 135511337.0 6 135598390.0 0 9 UNEVALUABLE UNEVALUABLE
659_cit NAMPT intergenic(FZD8,ANKRD30A) chr7 106250928 chr10 36522876 BND CALL_659_cit_6 FP call 0.0 1 0 247 953 hg19 7 105891374.0 10 36811804.0 1 247 EVALUABLE BAM_AMBIGUOUS
659_cit POT1 SRRM4 chr7 124929882 chr12 119048352 BND CALL_659_cit_7 FP call 0.9986 0 0 0 10 hg19 7 124569936.0 12 119486157.0 0 0 UNEVALUABLE UNEVALUABLE
659_cit intergenic(KLF14,MKLN1) TMEM132D chr7 131079230 chr12 129699982 BND CALL_659_cit_8 TP call 0.9198 0 0 2 2257 hg19 7 130763989.0 12 130184527.0 0 2 UNEVALUABLE UNEVALUABLE
659_cit ATP6V0A4 CASP2 chr7 138717370 chr7 143300023 DUP CALL_659_cit_9 FP call 0.4693 0 0 11 1014 hg19 7 138402115.0 7 142997116.0 0 11 UNEVALUABLE UNEVALUABLE
659_cit intergenic(SFRP1,GOLGA7) MKLN1 chr8 41339869 chr7 131496059 BND CALL_659_cit_10 FP call 0.002 0 0 0 0 hg19 8 41197388.0 7 131180818.0 0 0 UNEVALUABLE UNEVALUABLE
659_cit LIPA LIPN chr10 89213706 chr10 88764499 BND CALL_659_cit_11 TP_DUP call 0.9556 0 0 0 461 hg19 10 90973463.0 10 90524256.0 0 0 UNEVALUABLE UNEVALUABLE
659_cit CHID1 MUC6 chr11 871617 chr11 1017626 DUP CALL_659_cit_12 FP call 0.0012 0 0 4 2888 hg19 11 871617.0 11 1017626.0 0 4 UNEVALUABLE UNEVALUABLE
659_cit AGAP2 intergenic(SLC16A7,TAFA2) chr12 57729666 chr12 61251620 DUP CALL_659_cit_13 TP call 0.9893 0 0 771 2 hg19 12 58123449.0 12 61645401.0 0 2 UNEVALUABLE UNEVALUABLE
659_cit TMEM132D MKLN1 chr12 129679836 chr7 131493957 BND CALL_659_cit_14 FP call 0.2718 0 0 0 0 hg19 12 130164381.0 7 131178716.0 0 0 UNEVALUABLE UNEVALUABLE
659_cit PHKB LONP2 chr16 47546500 chr16 48252172 DEL CALL_659_cit_15 TP call 0.9983 0 0 2 412 hg19 16 47580411.0 16 48286083.0 0 2 UNEVALUABLE UNEVALUABLE
659_cit intergenic(AKTIP,RPGRIP1L) RPGRIP1L chr16 53545374 chr16 53657469 DEL CALL_659_cit_16 TP call 0.9949 0 0 0 280 hg19 16 53579286.0 16 53691381.0 0 0 UNEVALUABLE UNEVALUABLE
659_cit ZFHX3 MARCHF1 chr16 72787105 chr4 164007439 BND CALL_659_cit_17 FP call 0.0 0 0 1685 9 hg19 16 72821004.0 4 164928591.0 0 9 UNEVALUABLE UNEVALUABLE
659_cit OSBPL7 intergenic(KIF2B,TOM1L1) chr17 47808340 chr17 54548242 BND CALL_659_cit_18 TP call 0.9958 0 0 1143 0 hg19 17 45885706.0 17 52625603.0 0 0 UNEVALUABLE UNEVALUABLE
659_cit MKS1 LPO chr17 58207173 chr17 58235049 BND CALL_659_cit_19 TP call 0.8721 0 0 717 1 hg19 17 56284534.0 17 56312410.0 0 1 UNEVALUABLE UNEVALUABLE
659_cit intergenic(NACA2,BRIP1) GNA13 chr17 61643738 chr17 65012356 DEL CALL_659_cit_20 FP call 0.9124 0 0 0 0 hg19 17 59721099.0 17 63008474.0 0 0 UNEVALUABLE UNEVALUABLE
659_cit intergenic(TRHDE,ATXN7L3B) UBC chr12 72861292 chr12 124911739 INVERSION TRUTH_659_cit_21 TRUTH truth 38.0 0 0 0 2012 hg19 12 73255072.0 12 125396285.0 0 0 UNEVALUABLE UNEVALUABLE
659_cit PBXIP1 DCST2 chr1 154955107 chr1 155033462 DUPLICATION TRUTH_659_cit_22 TRUTH truth 70.0 0 0 207 1800 hg19 1 154927583.0 1 155005938.0 0 207 EVALUABLE BAM_REFUTED
659_cit intergenic(AKTIP,RPGRIP1L) RPGRIP1L chr16 53545373 chr16 53657468 DELETION TRUTH_659_cit_23 TRUTH truth 38.0 0 0 0 280 hg19 16 53579285.0 16 53691380.0 0 0 UNEVALUABLE UNEVALUABLE
659_cit AGAP2 intergenic(SLC16A7,TAFA2) chr12 57729644 chr12 61251651 DUPLICATION TRUTH_659_cit_24 TRUTH truth 28.0 0 0 771 2 hg19 12 58123427.0 12 61645432.0 0 2 UNEVALUABLE UNEVALUABLE
659_cit KCND3 CAPZA1 chr1 111982632 chr1 112659077 INVERSION TRUTH_659_cit_25 TRUTH truth 158.0 0 0 1874 189 hg19 1 112525254.0 1 113201699.0 0 189 EVALUABLE BAM_REFUTED
659_cit LIPN LIPA chr10 88764498 chr10 89213705 INVERSION TRUTH_659_cit_26 TRUTH truth 73.0 0 0 461 0 hg19 10 90524255.0 10 90973462.0 0 0 UNEVALUABLE UNEVALUABLE
659_cit OSBPL7 intergenic(KIF2B,TOM1L1) chr17 47808338 chr17 54548240 INVERSION TRUTH_659_cit_27 TRUTH truth 107.0 0 0 1140 0 hg19 17 45885704.0 17 52625601.0 0 0 UNEVALUABLE UNEVALUABLE
659_cit intergenic(KLF14,MKLN1) TMEM132D chr7 131079229 chr12 129699980 TRANSLOCATION TRUTH_659_cit_28 TRUTH truth 40.0 0 0 2 2251 hg19 7 130763988.0 12 130184525.0 0 2 UNEVALUABLE UNEVALUABLE
659_cit MYB intergenic(MYB,AHI1) chr6 135190198 chr6 135277251 DUPLICATION TRUTH_659_cit_29 TRUTH truth 39.0 0 0 1861 9 hg19 6 135511336.0 6 135598389.0 0 9 UNEVALUABLE UNEVALUABLE
659_cit PHKB LONP2 chr16 47546499 chr16 48252171 DELETION TRUTH_659_cit_30 TRUTH truth 58.0 0 0 2 412 hg19 16 47580410.0 16 48286082.0 0 2 UNEVALUABLE UNEVALUABLE
659_cit MKS1 LPO chr17 58207171 chr17 58235047 INVERSION TRUTH_659_cit_31 TRUTH truth 26.0 0 0 717 1 hg19 17 56284532.0 17 56312408.0 0 1 UNEVALUABLE UNEVALUABLE
659_dc8 SND1 BRAF chr7 127909488 chr7 140792536 BND CALL_659_dc8_0 TP_DUP call 0.9976 0 0 1 5539 hg19 7 127549541.0 7 140492336.0 0 1 UNEVALUABLE UNEVALUABLE
659_dc8 CPQ PPARG chr8 96821063 chr3 12330416 BND CALL_659_dc8_1 FP call 0.0 0 0 0 0 hg19 8 97833291.0 3 12371915.0 0 0 UNEVALUABLE UNEVALUABLE
659_dc8 intergenic(ELAVL2,IZUMO3) EVI5 chr9 24065942 chr1 92513729 BND CALL_659_dc8_2 FP call 0.0003 0 0 0 524 hg19 9 24065940.0 1 92979286.0 0 0 UNEVALUABLE UNEVALUABLE
659_dc8 KAT6B GNAS chr10 74858133 chr20 58853300 BND CALL_659_dc8_3 FP call 0.0 0 0 0 4030 hg19 10 76617891.0 20 57428355.0 0 0 UNEVALUABLE UNEVALUABLE
659_dc8 MYOD1 intergenic(TPH1,SAAL1) chr11 17719687 chr11 18050956 DEL CALL_659_dc8_4 FP call 0.3446 0 0 826 0 hg19 11 17741234.0 11 18072503.0 0 0 UNEVALUABLE UNEVALUABLE
659_dc8 RPS27L intergenic(GOT2,CDH8) chr15 63155676 chr16 59089050 BND CALL_659_dc8_5 FP call 0.0321 0 0 268 156 hg19 15 63447875.0 16 59122954.0 0 156 EVALUABLE BAM_REFUTED
659_dc8 SND1 BRAF chr7 127909486 chr7 140792524 INVERSION TRUTH_659_dc8_6 TRUTH truth 89.0 0 0 1 5506 hg19 7 127549539.0 7 140492324.0 0 1 UNEVALUABLE UNEVALUABLE
659_dhS SPRR2B SPRR2E chr1 153070690 chr1 153093668 DEL CALL_659_dhS_0 FP call 0.0178 30 0 1805 2697 hg19 1.0 153043166.0 1.0 153066144.0 30 1805 EVALUABLE BAM_CONFIRMED
659_dhS OR2T7 OR2T27 chr1 248441175 chr1 248650952 BND CALL_659_dhS_1 FP call 0.0002 1 0 627 652 hg19 1.0 248604476.0 1.0 248814253.0 1 627 EVALUABLE BAM_AMBIGUOUS
659_dhS ENSG00000282278 GLP2R chr4 54269511 chr17 9845775 BND CALL_659_dhS_2 FP call 0.0 0 0 6730 2 hg19 4.0 55135678.0 17.0 9749092.0 0 2 UNEVALUABLE UNEVALUABLE
659_dhS KDR intergenic(SRCIN1,EPOP) chr4 55079980 chr17 38618593 BND CALL_659_dhS_3 TP call 0.824 0 0 1583 11 hg19 4.0 55946147.0 17.0 36774846.0 0 11 UNEVALUABLE UNEVALUABLE
659_dhS SLC4A4 RUFY3 chr4 71287114 chr4 70764534 BND CALL_659_dhS_4 TP_DUP call 0.6226 0 0 0 167 hg19 4.0 72152831.0 4.0 71630251.0 0 0 UNEVALUABLE UNEVALUABLE
659_dhS DCLK2 TMA16 chr4 150079345 chr4 163514287 BND CALL_659_dhS_5 TP call 0.8169 0 0 1310 184 hg19 4.0 151000497.0 4.0 164435439.0 0 184 EVALUABLE BAM_REFUTED
659_dhS MUC3A intergenic(.,.) chr7 100953207 chrUn_JTFH01000054v1_decoy 3348 BND CALL_659_dhS_6 FP call 0.0 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_dhS PPP2R1A ZNF816-ZNF321P chr19 52211341 chr19 52948309 BND CALL_659_dhS_7 TP call 0.5357 0 0 1596 5 hg19 19.0 52714594.0 19.0 53451562.0 0 5 UNEVALUABLE UNEVALUABLE
659_dhS KDR intergenic(SRCIN1,EPOP) chr4 55079979 chr17 38618592 TRANSLOCATION TRUTH_659_dhS_8 TRUTH truth 43.0 0 0 1583 11 hg19 4.0 55946146.0 17.0 36774845.0 0 11 UNEVALUABLE UNEVALUABLE
659_dhS RUFY3 SLC4A4 chr4 70764530 chr4 71287116 INVERSION TRUTH_659_dhS_9 TRUTH truth 30.0 0 0 167 0 hg19 4.0 71630247.0 4.0 72152833.0 0 0 UNEVALUABLE UNEVALUABLE
659_dhS DCLK2 TMA16 chr4 150079343 chr4 163514285 INVERSION TRUTH_659_dhS_10 TRUTH truth 42.0 0 0 1310 184 hg19 4.0 151000495.0 4.0 164435437.0 0 184 EVALUABLE BAM_REFUTED
659_dhS PPP2R1A ZNF816-ZNF321P chr19 52211339 chr19 52948307 INVERSION TRUTH_659_dhS_11 TRUTH truth 41.0 0 0 1596 5 hg19 19.0 52714592.0 19.0 53451560.0 0 5 UNEVALUABLE UNEVALUABLE
659_doL intergenic(ZC3H15,ITGAV) HLA-DRB1 chr2 186532001 chr6 32584156 BND CALL_659_doL_0 FP call 0.0 0 0 18 1017 hg19 2 187396728.0 6 32551933.0 0 18 UNEVALUABLE UNEVALUABLE
659_doL intergenic(CLDN25,USP28) TMPRSS2 chr11 113787396 chr21 41503559 BND CALL_659_doL_1 TP call 0.9932 0 0 0 5920 hg19 11 113658118.0 21 42875486.0 0 0 UNEVALUABLE UNEVALUABLE
659_doL ERG TMPRSS2 chr21 38488158 chr21 41503541 DEL CALL_659_doL_2 TP call 0.9926 0 0 0 5906 hg19 21 39860081.0 21 42875468.0 0 0 UNEVALUABLE UNEVALUABLE
659_doL intergenic(CLDN25,USP28) TMPRSS2 chr11 113787395 chr21 41503557 TRANSLOCATION TRUTH_659_doL_3 TRUTH truth 101.0 0 0 0 5919 hg19 11 113658117.0 21 42875484.0 0 0 UNEVALUABLE UNEVALUABLE
659_doL ERG TMPRSS2 chr21 38488157 chr21 41503540 DELETION TRUTH_659_doL_4 TRUTH truth 166.0 0 0 0 5912 hg19 21 39860080.0 21 42875467.0 0 0 UNEVALUABLE UNEVALUABLE
659_drH SPATA1 SOX11 chr1 84527509 chr2 5694402 BND CALL_659_drH_0 FP call 0.0 0 0 10 708 hg19 1.0 84993192.0 2.0 5834534.0 0 10 UNEVALUABLE UNEVALUABLE
659_drH STRN GMCL1 chr2 36899094 chr2 69837663 DEL CALL_659_drH_1 FP call 0.0337 0 0 317 103 hg19 2.0 37126237.0 2.0 70064795.0 0 103 EVALUABLE BAM_REFUTED
659_drH HLA-C HLA-G chr6 31271493 chr6 29828430 BND CALL_659_drH_2 FP call 0.0 1 0 5079 2621 hg19 6.0 31239270.0 6.0 29796207.0 1 2621 EVALUABLE BAM_AMBIGUOUS
659_drH HLA-B HLA-A chr6 31356739 chr6 29942857 BND CALL_659_drH_3 FP call 0.0 0 0 4963 5889 hg19 6.0 31324516.0 6.0 29910634.0 0 4963 EVALUABLE BAM_REFUTED
659_drH RUNX2 DST chr6 45432557 chr6 56515556 BND CALL_659_drH_4 TP call 0.9874 0 0 147 629 hg19 6.0 45400294.0 6.0 56380354.0 0 147 EVALUABLE BAM_REFUTED
659_drH DST MED20 chr6 56525605 chr6 41909426 BND CALL_659_drH_5 TP_DUP call 0.2375 0 0 4 780 hg19 6.0 56390403.0 6.0 41877164.0 0 4 UNEVALUABLE UNEVALUABLE
659_drH CALCR ZAN chr7 93438211 chr7 100764465 DEL CALL_659_drH_6 FP call 0.0369 0 0 395 743 hg19 7.0 93067523.0 7.0 100362088.0 0 395 EVALUABLE BAM_REFUTED
659_drH intergenic(WRN,NRG1) NRG1 chr8 31305465 chr8 32628445 DEL CALL_659_drH_7 FP call 0.0 0 0 0 3 hg19 8.0 31162981.0 8.0 32485963.0 0 0 UNEVALUABLE UNEVALUABLE
659_drH STAU2 MYO15B chr8 73614173 chr17 75619383 BND CALL_659_drH_8 FP call 0.9963 0 0 439 1 hg19 8.0 74526408.0 17.0 73615463.0 0 1 UNEVALUABLE UNEVALUABLE
659_drH ODF2 MVB12B chr9 128485429 chr9 126481351 BND CALL_659_drH_9 FP call 0.8233 0 0 276 154 hg19 9.0 131247708.0 9.0 129243630.0 0 154 EVALUABLE BAM_REFUTED
659_drH intergenic(SGPL1,UNC5B) POLR3A chr10 70933364 chr10 78022256 DEL CALL_659_drH_10 TP call 0.9935 0 0 0 896 hg19 10.0 72693121.0 10.0 79782014.0 0 0 UNEVALUABLE UNEVALUABLE
659_drH intergenic(TCERG1L,PPP2R2D) BNIP3 chr10 131401709 chr10 131970728 DEL CALL_659_drH_11 FP call 0.8381 0 0 0 1056 hg19 10.0 133199972.0 10.0 133784232.0 0 0 UNEVALUABLE UNEVALUABLE
659_drH LRRC4C SLCO2B1 chr11 41064019 chr11 75200289 DEL CALL_659_drH_12 TP call 0.9998 0 0 0 597 hg19 11.0 41085569.0 11.0 74911334.0 0 0 UNEVALUABLE UNEVALUABLE
659_drH intergenic(OR4A5,TRIM48) PHLPP1 chr11 55021510 chr18 62919982 BND CALL_659_drH_13 FP call 0.9711 0 0 2 257 hg19 11.0 54788986.0 18.0 60587215.0 0 2 UNEVALUABLE UNEVALUABLE
659_drH SLC22A24 NUMA1 chr11 63136011 chr11 72009301 DEL CALL_659_drH_14 TP call 0.9598 0 0 0 1254 hg19 11.0 62903483.0 11.0 71720347.0 0 0 UNEVALUABLE UNEVALUABLE
659_drH AP5B1 intergenic(TENM4,FAM181B) chr11 65779952 chr11 79673018 DUP CALL_659_drH_15 TP call 0.9957 0 0 3215 0 hg19 11.0 65547423.0 11.0 79384062.0 0 0 UNEVALUABLE UNEVALUABLE
659_drH SNX32 NUMA1 chr11 65853299 chr11 72023576 DEL CALL_659_drH_16 TP call 0.0324 0 0 750 124 hg19 11.0 65620770.0 11.0 71734622.0 0 124 EVALUABLE BAM_REFUTED
659_drH NDUFV1 TESMIN chr11 67608465 chr11 68715424 DEL CALL_659_drH_17 TP call 0.9978 0 0 1165 194 hg19 11.0 67375936.0 11.0 68482892.0 0 194 EVALUABLE BAM_REFUTED
659_drH MRPL21 NUMA1 chr11 68900299 chr11 72009108 DUP CALL_659_drH_18 TP call 0.9971 0 0 233 1450 hg19 11.0 68667767.0 11.0 71720154.0 0 233 EVALUABLE BAM_REFUTED
659_drH intergenic(MYEOV,CCND1) PCNX3 chr11 69343092 chr11 65630531 BND CALL_659_drH_19 TP_DUP call 0.9904 0 0 0 1053 hg19 11.0 69157860.0 11.0 65398002.0 0 0 UNEVALUABLE UNEVALUABLE
659_drH SLCO2B1 FAM168A chr11 75200235 chr11 73545348 BND CALL_659_drH_20 FP call 0.0856 0 0 596 2 hg19 11.0 74911280.0 11.0 73256393.0 0 2 UNEVALUABLE UNEVALUABLE
659_drH NEMF intergenic(LRFN5,FSCB) chr14 49832059 chr14 42255187 BND CALL_659_drH_21 TP_DUP call 0.984 0 0 349 0 hg19 14.0 50298777.0 14.0 42724390.0 0 0 UNEVALUABLE UNEVALUABLE
659_drH intergenic(NPAP1,SNRPN) ITGB2 chr15 24773051 chr21 44899053 BND CALL_659_drH_22 FP call 0.9946 0 0 2 208 hg19 15.0 25018198.0 21.0 46318968.0 0 2 UNEVALUABLE UNEVALUABLE
659_drH MEIOB TSC2 chr16 1860457 chr16 2068656 DUP CALL_659_drH_23 FP call 0.9247 0 0 144 6 hg19 16.0 1910458.0 16.0 2118657.0 0 6 UNEVALUABLE UNEVALUABLE
659_drH intergenic(PRSS22,FLYWCH2) MEIOB chr16 2868673 chr16 1857822 BND CALL_659_drH_24 FP call 0.7447 0 0 2 400 hg19 16.0 2918674.0 16.0 1907823.0 0 2 UNEVALUABLE UNEVALUABLE
659_drH KEAP1 intergenic(AP1M2,SLC44A2) chr19 10491630 chr19 10597414 DEL CALL_659_drH_25 TP call 0.9927 0 0 3794 6 hg19 19.0 10602306.0 19.0 10708090.0 0 6 UNEVALUABLE UNEVALUABLE
659_drH intergenic(CRYBA4,MN1) EWSR1 chr22 26669957 chr22 29295496 BND CALL_659_drH_26 FP call 0.0 0 0 1 4403 hg19 22.0 27065920.0 22.0 29691485.0 0 1 UNEVALUABLE UNEVALUABLE
659_drH intergenic(.,.) MUC3A chrUn_JTFH01000054v1_decoy 1234 chr7 100955554 BND CALL_659_drH_27 FP call 0.0 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_drH MED20 DST chr6 41909424 chr6 56525605 INVERSION TRUTH_659_drH_28 TRUTH truth 42.0 0 0 780 4 hg19 6.0 41877162.0 6.0 56390403.0 0 4 UNEVALUABLE UNEVALUABLE
659_drH LRRC4C SLCO2B1 chr11 41064018 chr11 75200288 DELETION TRUTH_659_drH_29 TRUTH truth 175.0 0 0 0 597 hg19 11.0 41085568.0 11.0 74911333.0 0 0 UNEVALUABLE UNEVALUABLE
659_drH intergenic(SGPL1,UNC5B) POLR3A chr10 70933363 chr10 78022255 DELETION TRUTH_659_drH_30 TRUTH truth 23.0 0 0 0 896 hg19 10.0 72693120.0 10.0 79782013.0 0 0 UNEVALUABLE UNEVALUABLE
659_drH RUNX2 DST chr6 45432555 chr6 56515554 INVERSION TRUTH_659_drH_31 TRUTH truth 48.0 0 0 154 629 hg19 6.0 45400292.0 6.0 56380352.0 0 154 EVALUABLE BAM_REFUTED
659_drH CFL1 NUMA1 chr11 65853298 chr11 72023575 DELETION TRUTH_659_drH_32 TRUTH truth 36.0 0 0 750 125 hg19 11.0 65620769.0 11.0 71734621.0 0 125 EVALUABLE BAM_REFUTED
659_drH intergenic(LRFN5,FSCB) NEMF chr14 42255183 chr14 49832059 INVERSION TRUTH_659_drH_33 TRUTH truth 36.0 0 0 0 349 hg19 14.0 42724386.0 14.0 50298777.0 0 0 UNEVALUABLE UNEVALUABLE
659_drH PCNX3 intergenic(MYEOV,CCND1) chr11 65630528 chr11 69343093 INVERSION TRUTH_659_drH_34 TRUTH truth 97.0 0 0 1053 0 hg19 11.0 65397999.0 11.0 69157861.0 0 0 UNEVALUABLE UNEVALUABLE
659_drH NDUFV1 TESMIN chr11 67608464 chr11 68715423 DELETION TRUTH_659_drH_35 TRUTH truth 171.0 0 0 1165 194 hg19 11.0 67375935.0 11.0 68482891.0 0 194 EVALUABLE BAM_REFUTED
659_drH AP5B1 intergenic(TENM4,FAM181B) chr11 65779951 chr11 79673017 DUPLICATION TRUTH_659_drH_36 TRUTH truth 113.0 0 0 3217 0 hg19 11.0 65547422.0 11.0 79384061.0 0 0 UNEVALUABLE UNEVALUABLE
659_drH MRPL21 NUMA1 chr11 68900298 chr11 72009107 DUPLICATION TRUTH_659_drH_37 TRUTH truth 80.0 0 0 233 1451 hg19 11.0 68667766.0 11.0 71720153.0 0 233 EVALUABLE BAM_REFUTED
659_drH KEAP1 intergenic(AP1M2,SLC44A2) chr19 10491629 chr19 10597413 DELETION TRUTH_659_drH_38 TRUTH truth 65.0 0 0 3789 6 hg19 19.0 10602305.0 19.0 10708089.0 0 6 UNEVALUABLE UNEVALUABLE
659_drH SLC22A24 NUMA1 chr11 63136010 chr11 72009300 DELETION TRUTH_659_drH_39 TRUTH truth 170.0 0 0 0 1256 hg19 11.0 62903482.0 11.0 71720346.0 0 0 UNEVALUABLE UNEVALUABLE
659_3g MTOR FER chr1 11199549 chr5 108823516 BND CALL_659_3g_0 TP_DUP call 0.9321 0 0 3821 8 hg19 1 11259606.0 5 108159217.0 0 8 UNEVALUABLE UNEVALUABLE
659_3g GALM TPCN1 chr2 38671309 chr12 113260404 BND CALL_659_3g_1 TP call 0.8581 0 0 0 820 hg19 2 38898451.0 12 113698209.0 0 0 UNEVALUABLE UNEVALUABLE
659_3g intergenic(MAP4K3,TMEM178A) SAT1 chr2 39566400 chrX 23785747 BND CALL_659_3g_2 TP call 0.8523 0 0 0 846 hg19 2 39793541.0 X 23803864.0 0 0 UNEVALUABLE UNEVALUABLE
659_3g STXBP5L GLI4 chr3 121384632 chr8 143276719 BND CALL_659_3g_3 TP call 0.9986 0 0 0 1285 hg19 3 121103479.0 8 144358889.0 0 0 UNEVALUABLE UNEVALUABLE
659_3g intergenic(UPP1,ABCA13) QTRT1 chr7 48153565 chr19 10712175 BND CALL_659_3g_4 TP call 0.9978 0 0 42 964 hg19 7 48193162.0 19 10822851.0 0 42 EVALUABLE BAM_REFUTED
659_3g intergenic(IFTAP,LRRC4C) STK33 chr11 37356482 chr11 8474779 BND CALL_659_3g_5 FP call 0.9533 0 0 0 599 hg19 11 37378032.0 11 8496326.0 0 0 UNEVALUABLE UNEVALUABLE
659_3g ETV6 ITGBL1 chr12 11774105 chr13 101604595 BND CALL_659_3g_6 FP call 0.0 0 0 1 1 hg19 12 11927039.0 13 102256945.0 0 1 UNEVALUABLE UNEVALUABLE
659_3g PTPRB UBE2L6 chr12 70592406 chr11 57566976 BND CALL_659_3g_7 FP call 0.0002 0 0 1050 58 hg19 12 70986186.0 11 57334449.0 0 58 EVALUABLE BAM_REFUTED
659_3g HNRNPL RPS19 chr19 38840345 chr19 41861711 DUP CALL_659_3g_8 TP call 0.9948 0 0 1091 159 hg19 19 39330985.0 19 42365780.0 0 159 EVALUABLE BAM_REFUTED
659_3g intergenic(RBX1,EP300) EP300 chr22 41078401 chr22 41117258 BND CALL_659_3g_9 FP call 0.0295 0 0 14 4718 hg19 22 41474405.0 22 41513262.0 0 14 UNEVALUABLE UNEVALUABLE
659_3g DESI1 intergenic(PCED1B,RPAP3) chr22 41620821 chr12 47391922 BND CALL_659_3g_10 FP call 0.0002 0 0 586 1 hg19 22 42016825.0 12 47785705.0 0 1 UNEVALUABLE UNEVALUABLE
659_3g intergenic(DGKK,SHROOM4) RBM3 chrX 50580073 chrX 48575635 BND CALL_659_3g_11 TP_DUP call 0.9995 0 0 0 1187 hg19 X 50323073.0 X 48434023.0 0 0 UNEVALUABLE UNEVALUABLE
659_3g intergenic(IGSF1,STK26) NSD1 chrX 131840825 chr5 177228787 BND CALL_659_3g_12 FP call 0.0077 0 0 0 3 hg19 X 130974853.0 5 176655788.0 0 0 UNEVALUABLE UNEVALUABLE
659_3g MTOR FER chr1 11199548 chr5 108823515 TRANSLOCATION TRUTH_659_3g_13 TRUTH truth 147.0 0 0 3821 8 hg19 1 11259605.0 5 108159216.0 0 8 UNEVALUABLE UNEVALUABLE
659_3g GALM TPCN1 chr2 38671289 chr12 113260411 TRANSLOCATION TRUTH_659_3g_14 TRUTH truth 147.0 0 0 0 820 hg19 2 38898431.0 12 113698216.0 0 0 UNEVALUABLE UNEVALUABLE
659_3g intergenic(MAP4K3,TMEM178A) SAT1 chr2 39566399 chrX 23785746 TRANSLOCATION TRUTH_659_3g_15 TRUTH truth 24.0 0 0 0 846 hg19 2 39793540.0 X 23803863.0 0 0 UNEVALUABLE UNEVALUABLE
659_3g STXBP5L GLI4 chr3 121384631 chr8 143276718 TRANSLOCATION TRUTH_659_3g_16 TRUTH truth 71.0 0 0 0 1285 hg19 3 121103478.0 8 144358888.0 0 0 UNEVALUABLE UNEVALUABLE
659_3g intergenic(UPP1,ABCA13) QTRT1 chr7 48153566 chr19 10712180 TRANSLOCATION TRUTH_659_3g_17 TRUTH truth 31.0 0 0 42 967 hg19 7 48193163.0 19 10822856.0 0 42 EVALUABLE BAM_REFUTED
659_3g HNRNPL RPS19 chr19 38840344 chr19 41861710 DUPLICATION TRUTH_659_3g_18 TRUTH truth 27.0 0 0 1091 164 hg19 19 39330984.0 19 42365779.0 0 164 EVALUABLE BAM_REFUTED
659_3g RBM3 intergenic(DGKK,SHROOM4) chrX 48575632 chrX 50580074 INVERSION TRUTH_659_3g_19 TRUTH truth 106.0 0 0 1177 0 hg19 X 48434020.0 X 50323074.0 0 0 UNEVALUABLE UNEVALUABLE
659_8w FN1 RAF1 chr2 215366093 chr3 12594784 BND CALL_659_8w_0 FP call 0.0 0 0 239 0 hg19 2 216230816.0 3 12636283.0 0 0 UNEVALUABLE UNEVALUABLE
659_8w SHROOM3 ENSG00000267618 chr4 76503168 chr17 35097614 BND CALL_659_8w_1 FP call 0.0001 0 0 12 0 hg19 4 77424321.0 17 33424633.0 0 0 UNEVALUABLE UNEVALUABLE
659_8w HLA-F HLA-C chr6 29724453 chr6 31271156 BND CALL_659_8w_2 FP call 0.0 0 0 2024 6863 hg19 6 29692230.0 6 31238933.0 0 2024 EVALUABLE BAM_REFUTED
659_8w intergenic(HLA-G,HLA-A) HLA-A chr6 29934290 chr6 29943474 DEL CALL_659_8w_3 FP call 0.0001 63 0 552 8134 hg19 6 29902067.0 6 29911251.0 63 552 EVALUABLE BAM_CONFIRMED
659_8w intergenic(SVEP1,MUSK) SUSD1 chr9 110609137 chr9 112102188 BND CALL_659_8w_4 FP call 0.0001 0 0 0 205 hg19 9 113371417.0 9 114864468.0 0 0 UNEVALUABLE UNEVALUABLE
659_8w MACROH2A2 HLA-DRB1 chr10 70083497 chr6 32581606 BND CALL_659_8w_5 FP call 0.0001 0 0 0 1059 hg19 10 71843253.0 6 32549383.0 0 0 UNEVALUABLE UNEVALUABLE
659_8w intergenic(LRIG3,SLC16A7) ENSG00000282278 chr12 59254689 chr4 54269536 BND CALL_659_8w_6 FP call 0.0 0 0 0 8530 hg19 12 59648470.0 4 55135703.0 0 0 UNEVALUABLE UNEVALUABLE
659_8w intergenic(NR2F2,ARRDC4) CH25H chr15 97659673 chr10 89206689 BND CALL_659_8w_7 TP_DUP call 0.0041 0 0 0 2122 hg19 15 98202903.0 10 90966446.0 0 0 UNEVALUABLE UNEVALUABLE
659_8w intergenic(ZFHX3,PSMD7) KLF5 chr16 73896061 chr13 73059429 BND CALL_659_8w_8 TP_DUP call 0.9915 0 0 8 1321 hg19 16 73929960.0 13 73633567.0 0 8 UNEVALUABLE UNEVALUABLE
659_8w ERG TMPRSS2 chr21 38461142 chr21 41498552 DEL CALL_659_8w_9 TP call 0.9619 0 0 0 9484 hg19 21 39833065.0 21 42870479.0 0 0 UNEVALUABLE UNEVALUABLE
659_8w MX1 TMPRSS2 chr21 41458180 chr21 41499053 DUP CALL_659_8w_10 TP call 0.0685 0 0 903 8910 hg19 21 42830107.0 21 42870980.0 0 903 EVALUABLE BAM_REFUTED
659_8w AR intergenic(CYSLTR1,RTL3) chrX 67710015 chrX 78645557 DUP CALL_659_8w_11 FP call 0.0 0 0 0 2 hg19 X 66929857.0 X 77901054.0 0 0 UNEVALUABLE UNEVALUABLE
659_8w KLF5 intergenic(ZFHX3,PSMD7) chr13 73059427 chr16 73896060 TRANSLOCATION TRUTH_659_8w_12 TRUTH truth 45.0 0 0 1321 8 hg19 13 73633565.0 16 73929959.0 0 8 UNEVALUABLE UNEVALUABLE
659_8w CH25H intergenic(NR2F2,ARRDC4) chr10 89206688 chr15 97659672 TRANSLOCATION TRUTH_659_8w_13 TRUTH truth 23.0 0 0 2115 0 hg19 10 90966445.0 15 98202902.0 0 0 UNEVALUABLE UNEVALUABLE
659_8w MX1 TMPRSS2 chr21 41458179 chr21 41499052 DUPLICATION TRUTH_659_8w_14 TRUTH truth 134.0 0 0 902 8900 hg19 21 42830106.0 21 42870979.0 0 902 EVALUABLE BAM_REFUTED
659_8w ERG TMPRSS2 chr21 38461141 chr21 41498551 DELETION TRUTH_659_8w_15 TRUTH truth 301.0 0 0 0 9492 hg19 21 39833064.0 21 42870478.0 0 0 UNEVALUABLE UNEVALUABLE
659_Mt intergenic(HLA-F,HLA-G) HLA-A chr6 29793181 chr6 29949282 DUP CALL_659_Mt_0 FP call 0.0 0 0 371 0 hg19 6 29760958.0 6 29917059.0 0 0 UNEVALUABLE UNEVALUABLE
659_Mt NAMPT intergenic(FZD8,ANKRD30A) chr7 106250933 chr10 36522838 BND CALL_659_Mt_1 FP call 0.0 0 0 218 1005 hg19 7 105891379.0 10 36811766.0 0 218 EVALUABLE BAM_REFUTED
659_Mt KMT2A ARCN1 chr11 118524019 chr11 118576227 DEL CALL_659_Mt_2 FP call 0.0 0 0 0 1 hg19 11 118394734.0 11 118446942.0 0 0 UNEVALUABLE UNEVALUABLE
659_Mt ATF1 EWSR1 chr12 50791938 chr22 29293485 BND CALL_659_Mt_3 TP call 0.9996 0 0 2 4696 hg19 12 51185721.0 22 29689474.0 0 2 UNEVALUABLE UNEVALUABLE
659_Mt RAD51B intergenic(CXXC4,TET2) chr14 67865035 chr4 104629266 BND CALL_659_Mt_4 FP call 0.0 0 0 1870 0 hg19 14 68331752.0 4 105550423.0 0 0 UNEVALUABLE UNEVALUABLE
659_Mt TLK2 DNAJC13 chr17 62485731 chr3 132507239 BND CALL_659_Mt_5 FP call 0.0 0 0 7 216 hg19 17 60563092.0 3 132226083.0 0 7 UNEVALUABLE UNEVALUABLE
659_Mt STAG2 intergenic(ZNF267,TP53TG3D) chrX 124096153 chr16 31939652 BND CALL_659_Mt_6 FP call 0.0 0 0 14 0 hg19 X 123230003.0 16 31950973.0 0 0 UNEVALUABLE UNEVALUABLE
659_Mt ATF1 EWSR1 chr12 50791937 chr22 29293484 TRANSLOCATION TRUTH_659_Mt_7 TRUTH truth 142.0 0 0 2 4696 hg19 12 51185720.0 22 29689473.0 0 2 UNEVALUABLE UNEVALUABLE
659_b6L ADAR intergenic(MRPS14,TNN) chr1 154601807 chr1 175046358 DEL CALL_659_b6L_0 TP call 0.9142 0 0 4139 32 hg19 1 154574283.0 1 175015494.0 0 32 EVALUABLE BAM_REFUTED
659_b6L ARHGEF11 intergenic(.,.) chr1 156937365 chrM 3191 BND CALL_659_b6L_1 FP call 0.9977 -1 -1 0 0 hg19 1 156907157.0 chrM 3192.0 -2 0 UNEVALUABLE UNEVALUABLE
659_b6L intergenic(CD1A,CD1C) CDK6 chr1 158288695 chr7 92611233 BND CALL_659_b6L_2 FP call 0.8078 0 0 1 2 hg19 1 158258485.0 7 92240547.0 0 1 UNEVALUABLE UNEVALUABLE
659_b6L FMO4 RABGAP1L chr1 171334505 chr1 174159517 DUP CALL_659_b6L_3 FP call 0.2137 0 0 559 0 hg19 1 171303644.0 1 174128655.0 0 0 UNEVALUABLE UNEVALUABLE
659_b6L PAPPA2 BRI3 chr1 176740147 chr7 98254372 BND CALL_659_b6L_4 FP call 0.0098 0 0 1482 13 hg19 1 176709283.0 7 97883684.0 0 13 UNEVALUABLE UNEVALUABLE
659_b6L MAGI1 CCDC174 chr3 65848176 chr3 14666900 BND CALL_659_b6L_5 TP_DUP call 0.9925 0 0 0 468 hg19 3 65833851.0 3 14708407.0 0 0 UNEVALUABLE UNEVALUABLE
659_b6L JARID2 KDM1B chr6 15520217 chr6 18162656 BND CALL_659_b6L_6 TP call 0.9986 0 0 644 181 hg19 6 15520448.0 6 18162887.0 0 181 EVALUABLE BAM_REFUTED
659_b6L KIF13A DST chr6 17844662 chr6 56619404 DUP CALL_659_b6L_7 FP call 0.9429 0 0 6 2456 hg19 6 17844893.0 6 56484202.0 0 6 UNEVALUABLE UNEVALUABLE
659_b6L intergenic(RIPOR2,CARMIL1) ABCC10 chr6 25148236 chr6 43436143 DUP CALL_659_b6L_8 TP call 0.9954 0 0 1 1899 hg19 6 25148464.0 6 43403881.0 0 1 UNEVALUABLE UNEVALUABLE
659_b6L ZNF318 intergenic(MOCS1,LRFN2) chr6 43357230 chr6 40198009 BND CALL_659_b6L_9 TP_DUP call 0.997 0 0 1871 0 hg19 6 43324968.0 6 40165748.0 0 0 UNEVALUABLE UNEVALUABLE
659_b6L intergenic(MDFIC,TFEC) OR6Y1 chr7 115245073 chr1 158547589 BND CALL_659_b6L_10 FP call 0.0004 0 0 0 2140 hg19 7 114885127.0 1 158517379.0 0 0 UNEVALUABLE UNEVALUABLE
659_b6L DGKI IGSF8 chr7 137497574 chr1 160095215 BND CALL_659_b6L_11 TP_DUP call 0.9916 0 0 2 1267 hg19 7 137182320.0 1 160065005.0 0 2 UNEVALUABLE UNEVALUABLE
659_b6L intergenic(SLC7A10,CEBPA) CEBPA chr19 33253193 chr19 33302093 BND CALL_659_b6L_12 TP call 0.9641 0 0 0 4811 hg19 19 33744099.0 19 33792999.0 0 0 UNEVALUABLE UNEVALUABLE
659_b6L BCAS1 MORC2 chr20 53946299 chr22 30936592 BND CALL_659_b6L_13 TP call 0.8152 0 0 0 1219 hg19 20 52562838.0 22 31332579.0 0 0 UNEVALUABLE UNEVALUABLE
659_b6L KREMEN1 BCAS1 chr22 29125406 chr20 53944593 BND CALL_659_b6L_14 TP_DUP call 0.9451 0 0 751 380 hg19 22 29521394.0 20 52561132.0 0 380 EVALUABLE BAM_REFUTED
659_b6L intergenic(SLC35E4,OSBP2) CHEK2 chr22 30692752 chr22 28694058 BND CALL_659_b6L_15 FP call 0.6446 0 0 7 768 hg19 22 31088739.0 22 29090046.0 0 7 UNEVALUABLE UNEVALUABLE
659_b6L MORC2 RBFOX2 chr22 30936552 chr22 35833488 BND CALL_659_b6L_16 TP call 0.0002 0 0 1213 0 hg19 22 31332539.0 22 36229535.0 0 0 UNEVALUABLE UNEVALUABLE
659_b6L MORC2 KREMEN1 chr22 30954290 chr22 29125397 BND CALL_659_b6L_17 TP_DUP call 0.9874 0 0 1 751 hg19 22 31350276.0 22 29521385.0 0 1 UNEVALUABLE UNEVALUABLE
659_b6L RBFOX2 EMID1 chr22 35834025 chr22 29206063 BND CALL_659_b6L_18 TP_DUP call 0.9145 0 0 0 407 hg19 22 36230072.0 22 29602052.0 0 0 UNEVALUABLE UNEVALUABLE
659_b6L WBP2NL BCAS1 chr22 41998861 chr20 53944906 BND CALL_659_b6L_19 TP_DUP call 0.9899 0 0 547 382 hg19 22 42394865.0 20 52561445.0 0 382 EVALUABLE BAM_REFUTED
659_b6L AMMECR1 STAG2 chrX 110199560 chrX 124078054 DUP CALL_659_b6L_20 FP call 0.7172 0 0 0 326 hg19 X 109442788.0 X 123211904.0 0 0 UNEVALUABLE UNEVALUABLE
659_b6L intergenic(.,.) OR9G1 chr11_JH159137v1_alt 19176 chr11 56701287 BND CALL_659_b6L_21 FP call 0.0 1919 0 4070 4224 hg19 11 56468806.0 11 56468763.0 1919 4070 EVALUABLE BAM_CONFIRMED
659_b6L ADAR intergenic(MRPS14,TNN) chr1 154601806 chr1 175046357 DELETION TRUTH_659_b6L_22 TRUTH truth 74.0 0 0 4139 32 hg19 1 154574282.0 1 175015493.0 0 32 EVALUABLE BAM_REFUTED
659_b6L IGSF8 DGKI chr1 160095214 chr7 137497573 TRANSLOCATION TRUTH_659_b6L_23 TRUTH truth 41.0 0 0 1267 2 hg19 1 160065004.0 7 137182319.0 0 2 UNEVALUABLE UNEVALUABLE
659_b6L CCDC174 MAGI1 chr3 14666899 chr3 65848175 INVERSION TRUTH_659_b6L_24 TRUTH truth 86.0 0 0 465 0 hg19 3 14708406.0 3 65833850.0 0 0 UNEVALUABLE UNEVALUABLE
659_b6L JARID2 KDM1B chr6 15520216 chr6 18162655 INVERSION TRUTH_659_b6L_25 TRUTH truth 65.0 0 0 644 181 hg19 6 15520447.0 6 18162886.0 0 181 EVALUABLE BAM_REFUTED
659_b6L intergenic(RIPOR2,CARMIL1) ABCC10 chr6 25148235 chr6 43436142 DUPLICATION TRUTH_659_b6L_26 TRUTH truth 112.0 0 0 1 1899 hg19 6 25148463.0 6 43403880.0 0 1 UNEVALUABLE UNEVALUABLE
659_b6L intergenic(MOCS1,LRFN2) ZNF318 chr6 40198007 chr6 43357228 INVERSION TRUTH_659_b6L_27 TRUTH truth 64.0 0 0 0 1867 hg19 6 40165746.0 6 43324966.0 0 0 UNEVALUABLE UNEVALUABLE
659_b6L intergenic(SLC7A10,CEBPA) CEBPA chr19 33253191 chr19 33302091 INVERSION TRUTH_659_b6L_28 TRUTH truth 85.0 0 0 0 4848 hg19 19 33744097.0 19 33792997.0 0 0 UNEVALUABLE UNEVALUABLE
659_b6L BCAS1 KREMEN1 chr20 53944588 chr22 29125405 TRANSLOCATION TRUTH_659_b6L_29 TRUTH truth 76.0 0 0 380 751 hg19 20 52561127.0 22 29521393.0 0 380 EVALUABLE BAM_REFUTED
659_b6L BCAS1 WBP2NL chr20 53944903 chr22 41998860 TRANSLOCATION TRUTH_659_b6L_30 TRUTH truth 52.0 0 0 382 547 hg19 20 52561442.0 22 42394864.0 0 382 EVALUABLE BAM_REFUTED
659_b6L BCAS1 MORC2 chr20 53946298 chr22 30936591 TRANSLOCATION TRUTH_659_b6L_31 TRUTH truth 83.0 0 0 0 1219 hg19 20 52562837.0 22 31332578.0 0 0 UNEVALUABLE UNEVALUABLE
659_b6L KREMEN1 MORC2 chr22 29125395 chr22 30954290 INVERSION TRUTH_659_b6L_32 TRUTH truth 56.0 0 0 751 1 hg19 22 29521383.0 22 31350276.0 0 1 UNEVALUABLE UNEVALUABLE
659_b6L EMID1 RBFOX2 chr22 29206061 chr22 35834023 INVERSION TRUTH_659_b6L_33 TRUTH truth 86.0 0 0 407 0 hg19 22 29602050.0 22 36230070.0 0 0 UNEVALUABLE UNEVALUABLE
659_b6L MORC2 RBFOX2 chr22 30936551 chr22 35833487 INVERSION TRUTH_659_b6L_34 TRUTH truth 218.0 0 0 1213 0 hg19 22 31332538.0 22 36229534.0 0 0 UNEVALUABLE UNEVALUABLE
659_bCu MROH7-TTC4 intergenic(WDFY3,ARHGAP24) chr1 54733649 chr4 85114825 BND CALL_659_bCu_0 FP call 0.0001 0 0 405 0 hg19 1 55199322.0 4 86035978.0 0 0 UNEVALUABLE UNEVALUABLE
659_bCu ALK TNS1 chr2 29225942 chr2 217875255 DEL CALL_659_bCu_1 TP call 0.6714 0 0 8292 0 hg19 2 29448808.0 2 218739978.0 0 0 UNEVALUABLE UNEVALUABLE
659_bCu intergenic(NAALADL2,TBL1XR1) FAS chr3 175918653 chr10 89027378 BND CALL_659_bCu_2 FP call 0.0 0 0 0 2 hg19 3 175636441.0 10 90787135.0 0 0 UNEVALUABLE UNEVALUABLE
659_bCu ZNF214 PTPN5 chr11 7000911 chr11 18761879 BND CALL_659_bCu_3 TP call 0.9978 0 0 3439 1 hg19 11 7022142.0 11 18783426.0 0 1 UNEVALUABLE UNEVALUABLE
659_bCu OR10A6 GAS2 chr11 7928835 chr11 22811882 DUP CALL_659_bCu_4 TP call 0.9575 0 0 703 633 hg19 11 7950382.0 11 22833428.0 0 633 EVALUABLE BAM_REFUTED
659_bCu PLEKHA7 intergenic(TPH1,SAAL1) chr11 16816891 chr11 18048285 DEL CALL_659_bCu_5 FP call 0.2884 0 0 1995 0 hg19 11 16838438.0 11 18069832.0 0 0 UNEVALUABLE UNEVALUABLE
659_bCu intergenic(CCDC179,LUZP2) PTPN5 chr11 23908602 chr11 18737886 BND CALL_659_bCu_6 FP call 0.9915 0 0 0 297 hg19 11 23930148.0 11 18759433.0 0 0 UNEVALUABLE UNEVALUABLE
659_bCu ZNF215 PTPN5 chr11 7000909 chr11 18761877 INVERSION TRUTH_659_bCu_7 TRUTH truth 112.0 0 0 3439 1 hg19 11 7022140.0 11 18783424.0 0 1 UNEVALUABLE UNEVALUABLE
659_bCu ALK intergenic(SPHKAP,PID1) chr2 29226063 chr2 228322898 DUPLICATION TRUTH_659_bCu_8 TRUTH truth 642.0 0 0 8231 2 hg19 2 29448929.0 2 229187614.0 0 2 UNEVALUABLE UNEVALUABLE
659_bCu ART5 intergenic(PARVA,TEAD1) chr11 3638826 chr11 12668340 DUPLICATION TRUTH_659_bCu_9 TRUTH truth 53.0 0 0 1108 0 hg19 11 3660056.0 11 12689887.0 0 0 UNEVALUABLE UNEVALUABLE
659_bCu ALK TNS1 chr2 29225941 chr2 217875254 DELETION TRUTH_659_bCu_10 TRUTH truth 743.0 0 0 8296 0 hg19 2 29448807.0 2 218739977.0 0 0 UNEVALUABLE UNEVALUABLE
659_bCu OR10A6 GAS2 chr11 7928834 chr11 22811881 DUPLICATION TRUTH_659_bCu_11 TRUTH truth 95.0 0 0 705 633 hg19 11 7950381.0 11 22833427.0 0 633 EVALUABLE BAM_REFUTED
659_bOh EML4 ALK chr2 42316346 chr2 29225400 BND CALL_659_bOh_0 TP_DUP call 0.0192 0 0 259 7942 hg19 2.0 42543486.0 2.0 29448266.0 0 259 EVALUABLE BAM_REFUTED
659_bOh intergenic(STRIT1,PLCH1) PABPC3 chr3 155309448 chr13 25096699 BND CALL_659_bOh_1 FP call 0.0011 4 0 401 3074 hg19 3.0 155027237.0 13.0 25670837.0 4 401 EVALUABLE BAM_CONFIRMED
659_bOh intergenic(HAS2,ZHX2) ALK chr8 122076996 chr2 29225400 BND CALL_659_bOh_2 TP_DUP call 0.7292 0 0 0 7942 hg19 8.0 123089235.0 2.0 29448266.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOh intergenic(LRIG3,SLC16A7) IRAK3 chr12 59414536 chr12 66189382 DEL CALL_659_bOh_3 FP call 0.0007 0 0 0 357 hg19 12.0 59808317.0 12.0 66583162.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOh BRD4 HAUS8 chr19 15254259 chr19 17063675 BND CALL_659_bOh_4 FP call 0.0 0 0 3956 2 hg19 19.0 15365070.0 19.0 17174485.0 0 2 UNEVALUABLE UNEVALUABLE
659_bOh AKT2 TTC9B chr19 40230826 chr19 40218315 BND CALL_659_bOh_5 FP call 0.0001 0 0 0 1017 hg19 19.0 40736733.0 19.0 40724222.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOh intergenic(.,.) MUC3A chrUn_JTFH01000054v1_decoy 3148 chr7 100952786 BND CALL_659_bOh_6 FP call 0.0 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_bOh ALK intergenic(HAS2,ZHX2) chr2 29225398 chr8 122076995 TRANSLOCATION TRUTH_659_bOh_7 TRUTH truth 112.0 0 0 7948 0 hg19 2.0 29448264.0 8.0 123089234.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOh ALK EML4 chr2 29225398 chr2 42316346 INVERSION TRUTH_659_bOh_8 TRUTH truth 75.0 0 0 7948 259 hg19 2.0 29448264.0 2.0 42543486.0 0 259 EVALUABLE BAM_REFUTED
659_bUW IRS1 intergenic(GBX2,ASB18) chr2 226733228 chr2 236184978 DUP CALL_659_bUW_0 FP call 0.0001 0 0 0 26 hg19 2 227597944.0 2 237093621.0 0 0 UNEVALUABLE UNEVALUABLE
659_bUW HLA-A TRIM40 chr6 29942936 chr6 30139949 DEL CALL_659_bUW_1 FP call 0.0 0 0 8962 6 hg19 6 29910713.0 6 30107726.0 0 6 UNEVALUABLE UNEVALUABLE
659_bUW intergenic(RFPL4B,MARCKS) HDAC2 chr6 113579884 chr6 113938842 DEL CALL_659_bUW_2 FP call 0.0119 0 0 4 0 hg19 6 113901086.0 6 114260006.0 0 0 UNEVALUABLE UNEVALUABLE
659_bUW BMS1 BTK chr10 42822165 chrX 101374537 BND CALL_659_bUW_3 TP call 0.7486 0 0 325 912 hg19 10 43317613.0 X 100629525.0 0 325 EVALUABLE BAM_REFUTED
659_bUW RET ARMCX4 chr10 43106057 chrX 101492227 BND CALL_659_bUW_4 TP call 0.9986 0 0 1799 2794 hg19 10 43601505.0 X 100747214.0 0 1799 EVALUABLE BAM_REFUTED
659_bUW RET RASGEF1A chr10 43123315 chr10 43196249 DEL CALL_659_bUW_5 TP call 0.214 0 0 1620 680 hg19 10 43618763.0 10 43691697.0 0 680 EVALUABLE BAM_REFUTED
659_bUW intergenic(ZWINT,IPMK) ARMCX4 chr10 56785424 chrX 101495251 BND CALL_659_bUW_6 TP call 0.9715 0 0 0 1298 hg19 10 58545184.0 X 100750238.0 0 0 UNEVALUABLE UNEVALUABLE
659_bUW CCDC6 RET chr10 59863812 chr10 43114350 BND CALL_659_bUW_7 TP_DUP call 0.9986 0 0 1 10954 hg19 10 61623570.0 10 43609798.0 0 1 UNEVALUABLE UNEVALUABLE
659_bUW BTK ARMCX4 chrX 101374958 chrX 101493925 DEL CALL_659_bUW_8 TP call 0.9659 0 0 2404 2308 hg19 X 100629946.0 X 100748912.0 0 2308 EVALUABLE BAM_REFUTED
659_bUW BTK intergenic(BMS1,RET) chrX 101375765 chr10 42913202 BND CALL_659_bUW_9 FP call 0.9068 0 0 775 0 hg19 X 100630753.0 10 43408650.0 0 0 UNEVALUABLE UNEVALUABLE
659_bUW ARMCX4 BMS1 chrX 101493810 chr10 42822155 BND CALL_659_bUW_10 FP call 0.0037 0 0 2475 325 hg19 X 100748797.0 10 43317603.0 0 325 EVALUABLE BAM_REFUTED
659_bUW BMS1 BTK chr10 42822164 chrX 101374536 TRANSLOCATION TRUTH_659_bUW_11 TRUTH truth 37.0 0 0 325 909 hg19 10 43317612.0 X 100629524.0 0 325 EVALUABLE BAM_REFUTED
659_bUW RET ARMCX4 chr10 43106056 chrX 101492226 TRANSLOCATION TRUTH_659_bUW_12 TRUTH truth 120.0 0 0 1796 2789 hg19 10 43601504.0 X 100747213.0 0 1796 EVALUABLE BAM_REFUTED
659_bUW RET CCDC6 chr10 43114346 chr10 59863812 INVERSION TRUTH_659_bUW_13 TRUTH truth 343.0 0 0 10966 1 hg19 10 43609794.0 10 61623570.0 0 1 UNEVALUABLE UNEVALUABLE
659_bUW RET RASGEF1A chr10 43123314 chr10 43196248 DELETION TRUTH_659_bUW_14 TRUTH truth 29.0 0 0 1613 680 hg19 10 43618762.0 10 43691696.0 0 680 EVALUABLE BAM_REFUTED
659_bUW intergenic(ZWINT,IPMK) ARMCX4 chr10 56785423 chrX 101495249 TRANSLOCATION TRUTH_659_bUW_15 TRUTH truth 39.0 0 0 0 1301 hg19 10 58545183.0 X 100750236.0 0 0 UNEVALUABLE UNEVALUABLE
659_bUW BTK ARMCX4 chrX 101374957 chrX 101493924 DELETION TRUTH_659_bUW_16 TRUTH truth 64.0 0 0 2406 2310 hg19 X 100629945.0 X 100748911.0 0 2310 EVALUABLE BAM_REFUTED
659_bqk NOC2L intergenic(ZNF627,ZNF823) chr1 945538 chr19 11642258 BND CALL_659_bqk_0 FP call 0.9327 0 0 1056 0 hg19 1.0 880918.0 19.0 11753073.0 0 0 UNEVALUABLE UNEVALUABLE
659_bqk NOC2L intergenic(C1orf159,TTLL10) chr1 946533 chr1 1125286 DEL CALL_659_bqk_1 FP call 0.1065 0 0 948 0 hg19 1.0 881913.0 1.0 1060666.0 0 0 UNEVALUABLE UNEVALUABLE
659_bqk ROR1 UBE2U chr1 64177499 chr1 64221185 DUP CALL_659_bqk_2 FP call 0.4115 0 0 1409 218 hg19 1.0 64643182.0 1.0 64686868.0 0 218 EVALUABLE BAM_REFUTED
659_bqk SH3BP5 METTL6 chr3 15256104 chr3 15409455 DUP CALL_659_bqk_3 TP call 0.9981 0 0 709 0 hg19 3.0 15297611.0 3.0 15450962.0 0 0 UNEVALUABLE UNEVALUABLE
659_bqk intergenic(GLYCTK,DNAH1) UQCC5 chr3 52298997 chr3 52547698 DUP CALL_659_bqk_4 FP call 0.0317 0 0 0 1483 hg19 3.0 52333013.0 3.0 52581714.0 0 0 UNEVALUABLE UNEVALUABLE
659_bqk GCSAM CFAP44 chr3 112133099 chr3 113298968 DUP CALL_659_bqk_5 TP call 0.9782 0 0 590 0 hg19 3.0 111851946.0 3.0 113017815.0 0 0 UNEVALUABLE UNEVALUABLE
659_bqk intergenic(TBC1D1,KLF3) TLR10 chr4 38631434 chr4 38774653 DUP CALL_659_bqk_6 TP call 0.7375 0 0 10 2381 hg19 4.0 38633055.0 4.0 38776274.0 0 10 UNEVALUABLE UNEVALUABLE
659_bqk CCNG2 DNMT1 chr4 77284090 chr19 10151434 BND CALL_659_bqk_7 TP call 0.0097 0 0 0 1499 hg19 4.0 78205243.0 19.0 10262110.0 0 0 UNEVALUABLE UNEVALUABLE
659_bqk ARL15 FAM169A chr5 54237451 chr5 74782997 DEL CALL_659_bqk_8 TP call 0.9992 0 0 0 459 hg19 5.0 53533281.0 5.0 74078822.0 0 0 UNEVALUABLE UNEVALUABLE
659_bqk HLA-C HLA-B chr6 31270977 chr6 31356036 DEL CALL_659_bqk_9 FP call 0.0005 46 0 6028 7584 hg19 6.0 31238754.0 6.0 31323813.0 46 6028 EVALUABLE BAM_CONFIRMED
659_bqk SDK1 PIK3CD chr7 4153585 chr1 9722251 BND CALL_659_bqk_10 TP_DUP call 0.3092 0 0 8 1504 hg19 7.0 4193217.0 1.0 9782309.0 0 8 UNEVALUABLE UNEVALUABLE
659_bqk BOP1 PPP1R16A chr8 144264558 chr8 144496889 DUP CALL_659_bqk_11 FP call 0.7893 0 0 0 933 hg19 8.0 145319461.0 8.0 145722272.0 0 0 UNEVALUABLE UNEVALUABLE
659_bqk MAMDC4 intergenic(SAPCD2,UAP1L1) chr9 136856734 chr9 137074786 DUP CALL_659_bqk_12 TP call 0.9211 0 0 1863 6 hg19 9.0 139751186.0 9.0 139969238.0 0 6 UNEVALUABLE UNEVALUABLE
659_bqk SIRT3 PHRF1 chr11 216274 chr11 607307 DUP CALL_659_bqk_13 TP call 0.6394 0 0 281 3402 hg19 11.0 216274.0 11.0 607307.0 0 281 EVALUABLE BAM_REFUTED
659_bqk SLC22A12 CAPN1 chr11 64601504 chr11 65191632 DUP CALL_659_bqk_14 TP call 0.9084 0 0 491 4 hg19 11.0 64368976.0 11.0 64959103.0 0 4 UNEVALUABLE UNEVALUABLE
659_bqk ETV6 CLIP1 chr12 11867964 chr12 122362592 DUP CALL_659_bqk_15 TP call 0.0382 0 0 6185 3 hg19 12.0 12020898.0 12.0 122847139.0 0 3 UNEVALUABLE UNEVALUABLE
659_bqk PLCB2 PHGR1 chr15 40298918 chr15 40355948 DEL CALL_659_bqk_16 FP call 0.9826 0 0 1306 529 hg19 15.0 40591119.0 15.0 40648149.0 0 529 EVALUABLE BAM_REFUTED
659_bqk intergenic(ST8SIA2,FAM174B) CHD2 chr15 92471845 chr15 92984409 DUP CALL_659_bqk_17 FP call 0.0002 0 0 859 1650 hg19 15.0 93015075.0 15.0 93527639.0 0 859 EVALUABLE BAM_REFUTED
659_bqk IRX3 intergenic(IRX3,IRX5) chr16 54285465 chr16 54535479 DUP CALL_659_bqk_18 TP call 0.995 0 0 2753 1 hg19 16.0 54319377.0 16.0 54569391.0 0 1 UNEVALUABLE UNEVALUABLE
659_bqk SARM1 intergenic(TRAF4,FAM222B) chr17 28372244 chr17 28751246 DUP CALL_659_bqk_19 FP call 0.9961 0 0 781 12 hg19 17.0 26699264.0 17.0 27078264.0 0 12 UNEVALUABLE UNEVALUABLE
659_bqk CARM1 SMARCA4 chr19 10921398 chr19 11033733 DUP CALL_659_bqk_20 FP call 0.8734 0 0 1676 4624 hg19 19.0 11032074.0 19.0 11144409.0 0 1676 EVALUABLE BAM_REFUTED
659_bqk KLF1 NFIX chr19 12886026 chr19 13048294 DUP CALL_659_bqk_21 FP call 0.3193 0 0 1422 2 hg19 19.0 12996840.0 19.0 13159108.0 0 2 UNEVALUABLE UNEVALUABLE
659_bqk ENSG00000268790 NWD1 chr19 16655953 chr19 16744435 DUP CALL_659_bqk_22 FP call 0.4099 0 0 18 624 hg19 19.0 16766764.0 19.0 16855246.0 0 18 UNEVALUABLE UNEVALUABLE
659_bqk JUND PDE4C chr19 18281396 chr19 18239662 BND CALL_659_bqk_23 FP call 0.0334 0 0 513 6 hg19 19.0 18392206.0 19.0 18350472.0 0 6 UNEVALUABLE UNEVALUABLE
659_bqk intergenic(KCNG1,NFATC2) NOC2L chr20 51058811 chr1 946283 BND CALL_659_bqk_24 FP call 0.0226 0 0 4 983 hg19 20.0 49675348.0 1.0 881663.0 0 4 UNEVALUABLE UNEVALUABLE
659_bqk KREMEN1 intergenic(MTMR3,HORMAD2) chr22 29138688 chr22 30037384 DUP CALL_659_bqk_25 TP call 0.7908 0 0 687 2 hg19 22.0 29534676.0 22.0 30433373.0 0 2 UNEVALUABLE UNEVALUABLE
659_bqk intergenic(.,.) MUC16 chrUn_JTFH01000107v1_decoy 1252 chr19 8897554 BND CALL_659_bqk_26 FP call 0.0 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_bqk PIK3CD SDK1 chr1 9722249 chr7 4153584 TRANSLOCATION TRUTH_659_bqk_27 TRUTH truth 58.0 0 0 1504 8 hg19 1.0 9782307.0 7.0 4193216.0 0 8 UNEVALUABLE UNEVALUABLE
659_bqk SH3BP5 METTL6 chr3 15256103 chr3 15409454 DUPLICATION TRUTH_659_bqk_28 TRUTH truth 105.0 0 0 709 0 hg19 3.0 15297610.0 3.0 15450961.0 0 0 UNEVALUABLE UNEVALUABLE
659_bqk GCSAM CFAP44 chr3 112133098 chr3 113298967 DUPLICATION TRUTH_659_bqk_29 TRUTH truth 44.0 0 0 591 0 hg19 3.0 111851945.0 3.0 113017814.0 0 0 UNEVALUABLE UNEVALUABLE
659_bqk intergenic(TBC1D1,KLF3) TLR10 chr4 38631433 chr4 38774652 DUPLICATION TRUTH_659_bqk_30 TRUTH truth 43.0 0 0 10 2381 hg19 4.0 38633054.0 4.0 38776273.0 0 10 UNEVALUABLE UNEVALUABLE
659_bqk CCNG2 DNMT1 chr4 77284089 chr19 10151429 TRANSLOCATION TRUTH_659_bqk_31 TRUTH truth 48.0 0 0 0 1499 hg19 4.0 78205242.0 19.0 10262105.0 0 0 UNEVALUABLE UNEVALUABLE
659_bqk ARL15 FAM169A chr5 54237450 chr5 74782996 DELETION TRUTH_659_bqk_32 TRUTH truth 88.0 0 0 0 459 hg19 5.0 53533280.0 5.0 74078821.0 0 0 UNEVALUABLE UNEVALUABLE
659_bqk MAMDC4 intergenic(SAPCD2,UAP1L1) chr9 136856733 chr9 137074785 DUPLICATION TRUTH_659_bqk_33 TRUTH truth 56.0 0 0 1863 6 hg19 9.0 139751185.0 9.0 139969237.0 0 6 UNEVALUABLE UNEVALUABLE
659_bqk SIRT3 PHRF1 chr11 216273 chr11 607306 DUPLICATION TRUTH_659_bqk_34 TRUTH truth 60.0 0 0 280 3401 hg19 11.0 216273.0 11.0 607306.0 0 280 EVALUABLE BAM_REFUTED
659_bqk SLC22A12 CAPN1 chr11 64601503 chr11 65191631 DUPLICATION TRUTH_659_bqk_35 TRUTH truth 53.0 0 0 493 4 hg19 11.0 64368975.0 11.0 64959102.0 0 4 UNEVALUABLE UNEVALUABLE
659_bqk ETV6 CLIP1 chr12 11867963 chr12 122362591 DUPLICATION TRUTH_659_bqk_36 TRUTH truth 55.0 0 0 6185 3 hg19 12.0 12020897.0 12.0 122847138.0 0 3 UNEVALUABLE UNEVALUABLE
659_bqk IRX3 intergenic(IRX3,IRX5) chr16 54285464 chr16 54535478 DUPLICATION TRUTH_659_bqk_37 TRUTH truth 127.0 0 0 2753 1 hg19 16.0 54319376.0 16.0 54569390.0 0 1 UNEVALUABLE UNEVALUABLE
659_bqk KREMEN1 intergenic(MTMR3,HORMAD2) chr22 29138687 chr22 30037383 DUPLICATION TRUTH_659_bqk_38 TRUTH truth 33.0 0 0 687 2 hg19 22.0 29534675.0 22.0 30433372.0 0 2 UNEVALUABLE UNEVALUABLE
659_btY DGKG STXBP4 chr3 186314084 chr17 55047122 BND CALL_659_btY_0 FP call 0.0 0 0 81 195 hg19 3 186031873.0 17 53124483.0 0 81 EVALUABLE BAM_REFUTED
659_btY ETV4 FRMD4A chr17 43531225 chr10 13777889 BND CALL_659_btY_1 TP_DUP call 0.975 0 0 7663 0 hg19 17 41608593.0 10 13819889.0 0 0 UNEVALUABLE UNEVALUABLE
659_btY PLAGL2 EWSR1 chr20 32192811 chr22 29291966 BND CALL_659_btY_2 TP call 0.7905 0 0 0 6613 hg19 20 30780614.0 22 29687955.0 0 0 UNEVALUABLE UNEVALUABLE
659_btY EWSR1 ETV4 chr22 29291839 chr17 43530988 BND CALL_659_btY_3 TP_DUP call 0.8191 0 0 6620 7674 hg19 22 29687828.0 17 41608356.0 0 6620 EVALUABLE BAM_REFUTED
659_btY intergenic(PHEX,DDX53) AR chrX 22497553 chrX 67710104 DUP CALL_659_btY_4 FP call 0.0 0 0 4 2 hg19 X 22515670.0 X 66929946.0 0 2 UNEVALUABLE UNEVALUABLE
659_btY FRMD4A ETV4 chr10 13777888 chr17 43531224 TRANSLOCATION TRUTH_659_btY_5 TRUTH truth 220.0 0 0 0 7654 hg19 10 13819888.0 17 41608592.0 0 0 UNEVALUABLE UNEVALUABLE
659_btY ETV4 EWSR1 chr17 43530985 chr22 29291838 TRANSLOCATION TRUTH_659_btY_6 TRUTH truth 489.0 0 0 7681 6615 hg19 17 41608353.0 22 29687827.0 0 6615 EVALUABLE BAM_REFUTED
659_btY PLAGL2 EWSR1 chr20 32192810 chr22 29291963 TRANSLOCATION TRUTH_659_btY_7 TRUTH truth 70.0 0 0 0 6615 hg19 20 30780613.0 22 29687952.0 0 0 UNEVALUABLE UNEVALUABLE
659_cck NFKB2 FGFR2 chr10 102397235 chr10 121480603 DUP CALL_659_cck_0 TP call 0.0538 0 0 1982 7258 hg19 10.0 104156992.0 10.0 123240117.0 0 1982 EVALUABLE BAM_REFUTED
659_cck NT5C2 FGFR2 chr10 103264373 chr10 121480765 BND CALL_659_cck_1 TP call 0.1636 0 0 7 7475 hg19 10.0 105024130.0 10.0 123240279.0 0 7 UNEVALUABLE UNEVALUABLE
659_cck GRAMD4 BCR chr22 46666924 chr22 23276619 BND CALL_659_cck_2 FP call 0.0 0 0 228 5744 hg19 22.0 47062821.0 22.0 23618806.0 0 228 EVALUABLE BAM_REFUTED
659_cck intergenic(.,.) MUC3A chrUn_JTFH01000054v1_decoy 3113 chr7 100952819 BND CALL_659_cck_3 FP call 0.0007 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_cck NFKB2 FGFR2 chr10 102397234 chr10 121480602 DUPLICATION TRUTH_659_cck_4 TRUTH truth 39.0 0 0 1982 7262 hg19 10.0 104156991.0 10.0 123240116.0 0 1982 EVALUABLE BAM_REFUTED
659_cck NT5C2 FGFR2 chr10 103264371 chr10 121480763 INVERSION TRUTH_659_cck_5 TRUTH truth 68.0 0 0 7 7470 hg19 10.0 105024128.0 10.0 123240277.0 0 7 UNEVALUABLE UNEVALUABLE
659_cwv intergenic(CCDC192,SLC12A2) SLC12A2 chr5 128021855 chr5 128083965 DEL CALL_659_cwv_0 TP call 0.5169 0 0 2 1511 hg19 5 127357547.0 5 127419657.0 0 2 UNEVALUABLE UNEVALUABLE
659_cwv intergenic(GUCY1A2,CWF19L2) OGFR chr11 107110772 chr20 62813601 BND CALL_659_cwv_1 FP call 0.0 0 0 2 3190 hg19 11 106981498.0 20 61444953.0 0 2 UNEVALUABLE UNEVALUABLE
659_cwv intergenic(CCDC192,SLC12A2) SLC12A2 chr5 128021854 chr5 128083964 DELETION TRUTH_659_cwv_2 TRUTH truth 5.0 0 0 2 1509 hg19 5 127357546.0 5 127419656.0 0 2 UNEVALUABLE UNEVALUABLE
659_dES SH3BGRL3 UBXN11 chr1 26280727 chr1 26282337 DEL CALL_659_dES_0 TP call 0.3484 0 0 1224 2517 hg19 1 26607218.0 1 26608828.0 0 1224 EVALUABLE BAM_REFUTED
659_dES TACC3 FGFR3 chr4 1735858 chr4 1806930 DUP CALL_659_dES_1 TP call 0.9992 0 0 451 10959 hg19 4 1737585.0 4 1808657.0 0 451 EVALUABLE BAM_REFUTED
659_dES FOXC1 GMDS chr6 1610563 chr6 1710331 DUP CALL_659_dES_2 TP call 0.6299 0 0 1773 2 hg19 6 1610798.0 6 1710565.0 0 2 UNEVALUABLE UNEVALUABLE
659_dES intergenic(SLC35B3,TFAP2A) ENSG00000272162 chr6 9700297 chr6 10770169 DUP CALL_659_dES_3 TP call 0.9759 1 1 2 515 hg19 6 9700530.0 6 10770402.0 2 2 UNEVALUABLE UNEVALUABLE
659_dES OR2J2 intergenic(DEPDC1,LRRC7) chr6 29174532 chr1 68785742 BND CALL_659_dES_4 FP call 0.0005 0 0 1299 0 hg19 6 29142309.0 1 69251425.0 0 0 UNEVALUABLE UNEVALUABLE
659_dES HLA-DPB1 intergenic(NCAM2,MRPL39) chr6 33080923 chr21 22181518 BND CALL_659_dES_5 FP call 0.0 0 0 1201 0 hg19 6 33048700.0 21 23553837.0 0 0 UNEVALUABLE UNEVALUABLE
659_dES CNKSR3 TIAM2 chr6 154488187 chr6 155245717 DUP CALL_659_dES_6 FP call 0.1519 0 0 0 297 hg19 6 154809321.0 6 155566851.0 0 0 UNEVALUABLE UNEVALUABLE
659_dES SCRIB intergenic(NRBP2,EPPK1) chr8 143807554 chr8 143845630 DUP CALL_659_dES_7 FP call 0.9904 0 0 248 2 hg19 8 144889724.0 8 144927802.0 0 2 UNEVALUABLE UNEVALUABLE
659_dES BOP1 CPSF1 chr8 144278560 chr8 144394750 DUP CALL_659_dES_8 FP call 0.9878 0 0 3 2264 hg19 8 145502593.0 8 145619965.0 0 3 UNEVALUABLE UNEVALUABLE
659_dES PPP1R16A LRRC14 chr8 144485766 chr8 144523184 DUP CALL_659_dES_9 TP call 0.9888 0 0 10 1711 hg19 8 145711149.0 8 145748568.0 0 10 UNEVALUABLE UNEVALUABLE
659_dES NMT2 FAM171A1 chr10 15130216 chr10 15279204 DUP CALL_659_dES_10 TP call 0.8338 0 0 406 0 hg19 10 15172215.0 10 15321203.0 0 0 UNEVALUABLE UNEVALUABLE
659_dES BMS1 CHD2 chr10 42814752 chr15 92997317 BND CALL_659_dES_11 FP call 0.0 0 0 0 2157 hg19 10 43310200.0 15 93540547.0 0 0 UNEVALUABLE UNEVALUABLE
659_dES intergenic(OR52J3,OR52E2) OR52E2 chr11 5058610 chr11 5059009 DEL CALL_659_dES_12 FP call 0.2471 457 0 838 1613 hg19 11 5079840.0 11 5080239.0 457 838 EVALUABLE BAM_CONFIRMED
659_dES CTR9 ZBED5 chr11 10770213 chr11 10840898 DUP CALL_659_dES_13 FP call 0.003 0 0 655 2 hg19 11 10791760.0 11 10862445.0 0 2 UNEVALUABLE UNEVALUABLE
659_dES intergenic(CHORDC1,FAT3) LIPA chr11 91871695 chr10 89402779 BND CALL_659_dES_14 TP_DUP call 0.9403 0 0 0 2256 hg19 11 91604861.0 10 91162536.0 0 0 UNEVALUABLE UNEVALUABLE
659_dES ETV6 intergenic(ETV6,BCL2L14) chr12 11877444 chr12 12039833 DUP CALL_659_dES_15 TP call 0.8717 0 0 5642 0 hg19 12 12030378.0 12 12192767.0 0 0 UNEVALUABLE UNEVALUABLE
659_dES intergenic(PHETA1,SH2B3) SH2B3 chr12 111375419 chr12 111450675 DUP CALL_659_dES_16 FP call 0.9678 0 0 10 2 hg19 12 111813223.0 12 111888479.0 0 2 UNEVALUABLE UNEVALUABLE
659_dES SH3BGRL3 UBXN11 chr1 26280726 chr1 26282336 DELETION TRUTH_659_dES_17 TRUTH truth 40.0 0 0 1224 2514 hg19 1 26607217.0 1 26608827.0 0 1224 EVALUABLE BAM_REFUTED
659_dES TACC3 FGFR3 chr4 1735857 chr4 1806929 DUPLICATION TRUTH_659_dES_18 TRUTH truth 332.0 0 0 451 10933 hg19 4 1737584.0 4 1808656.0 0 451 EVALUABLE BAM_REFUTED
659_dES FOXC1 GMDS chr6 1610562 chr6 1710330 DUPLICATION TRUTH_659_dES_19 TRUTH truth 87.0 0 0 1771 2 hg19 6 1610797.0 6 1710564.0 0 2 UNEVALUABLE UNEVALUABLE
659_dES intergenic(SLC35B3,TFAP2A) TMEM14B chr6 9700296 chr6 10770168 DUPLICATION TRUTH_659_dES_20 TRUTH truth 51.0 1 1 2 515 hg19 6 9700529.0 6 10770401.0 2 2 UNEVALUABLE UNEVALUABLE
659_dES PPP1R16A LRRC14 chr8 144485765 chr8 144523183 DUPLICATION TRUTH_659_dES_21 TRUTH truth 27.0 0 0 10 1718 hg19 8 145711148.0 8 145748567.0 0 10 UNEVALUABLE UNEVALUABLE
659_dES NMT2 FAM171A1 chr10 15130215 chr10 15279203 DUPLICATION TRUTH_659_dES_22 TRUTH truth 37.0 0 0 406 0 hg19 10 15172214.0 10 15321202.0 0 0 UNEVALUABLE UNEVALUABLE
659_dES LIPA intergenic(CHORDC1,FAT3) chr10 89402777 chr11 91871694 TRANSLOCATION TRUTH_659_dES_23 TRUTH truth 35.0 0 0 2251 0 hg19 10 91162534.0 11 91604860.0 0 0 UNEVALUABLE UNEVALUABLE
659_dES ETV6 intergenic(ETV6,BCL2L14) chr12 11877443 chr12 12039832 DUPLICATION TRUTH_659_dES_24 TRUTH truth 190.0 0 0 5644 0 hg19 12 12030377.0 12 12192766.0 0 0 UNEVALUABLE UNEVALUABLE
659_dKM PPARG PIK3CB chr3 12316158 chr3 138772003 DUP CALL_659_dKM_0 FP call 0.0 0 0 1 4 hg19 3 12357657.0 3 138490845.0 0 1 UNEVALUABLE UNEVALUABLE
659_dKM NEK10 TGFBR1 chr3 27364260 chr9 99154186 BND CALL_659_dKM_1 FP call 0.0 0 0 7 0 hg19 3 27405751.0 9 101916468.0 0 0 UNEVALUABLE UNEVALUABLE
659_dKM ZNF311 intergenic(NUDT12,EFNA5) chr6 28996291 chr5 103564407 BND CALL_659_dKM_2 TP_DUP call 0.0019 0 0 2543 7 hg19 6 28964068.0 5 102900108.0 0 7 UNEVALUABLE UNEVALUABLE
659_dKM HLA-C HLA-A chr6 31271131 chr6 29943482 BND CALL_659_dKM_3 FP call 0.0 1 0 6672 6293 hg19 6 31238908.0 6 29911259.0 1 6293 EVALUABLE BAM_AMBIGUOUS
659_dKM NOD1 NTRK3 chr7 30445302 chr15 88012541 BND CALL_659_dKM_4 FP call 0.0 0 0 6 0 hg19 7 30484918.0 15 88555772.0 0 0 UNEVALUABLE UNEVALUABLE
659_dKM SKIDA1 MLLT10 chr10 21516378 chr10 21639406 DEL CALL_659_dKM_5 TP call 0.991 0 0 3389 2 hg19 10 21805307.0 10 21928335.0 0 2 UNEVALUABLE UNEVALUABLE
659_dKM NCOA4 RET chr10 46007133 chr10 43115597 BND CALL_659_dKM_6 TP_DUP call 0.9986 0 0 111 8663 hg19 10 51588687.0 10 43611045.0 0 111 EVALUABLE BAM_REFUTED
659_dKM intergenic(LMF1,SOX8) ETV4 chr16 981469 chr17 43543258 BND CALL_659_dKM_7 FP call 0.0 0 0 109 0 hg19 16 1031469.0 17 41620626.0 0 0 UNEVALUABLE UNEVALUABLE
659_dKM MYO1D EVPL chr17 32666418 chr17 76008904 DUP CALL_659_dKM_8 TP call 0.9997 0 0 2 3279 hg19 17 30993436.0 17 74004985.0 0 2 UNEVALUABLE UNEVALUABLE
659_dKM AATF SOCS7 chr17 37035290 chr17 38352678 DUP CALL_659_dKM_9 TP call 0.8136 0 0 7 2289 hg19 17 35392587.0 17 36508561.0 0 7 UNEVALUABLE UNEVALUABLE
659_dKM intergenic(TBC1D3,MRPL45) SLC4A1 chr17 38278175 chr17 44258126 DEL CALL_659_dKM_10 FP call 0.0214 0 0 27 1652 hg19 17 36434153.0 17 42335494.0 0 27 EVALUABLE BAM_REFUTED
659_dKM MPP3 SDK2 chr17 43830088 chr17 73641273 DEL CALL_659_dKM_11 TP call 0.9989 0 0 919 0 hg19 17 41907456.0 17 71637412.0 0 0 UNEVALUABLE UNEVALUABLE
659_dKM DBF4B NFAT5 chr17 44750540 chr16 69691786 BND CALL_659_dKM_12 TP_DUP call 0.9687 0 0 3408 1243 hg19 17 42827908.0 16 69725689.0 0 1243 EVALUABLE BAM_REFUTED
659_dKM GGA3 SOCS3 chr17 75255819 chr17 78358492 DUP CALL_659_dKM_13 FP call 0.0092 0 0 0 1586 hg19 17 73251900.0 17 76354573.0 0 0 UNEVALUABLE UNEVALUABLE
659_dKM intergenic(SEPTIN9,TNRC6C) ENSG00000267318 chr17 77584206 chr17 59947670 BND CALL_659_dKM_14 FP call 0.7423 0 0 5 444 hg19 17 75580288.0 17 58025031.0 0 5 UNEVALUABLE UNEVALUABLE
659_dKM ZNF440 ZNF439 chr19 11832065 chr19 11868089 DEL CALL_659_dKM_15 TP call 0.0013 0 0 4390 3500 hg19 19 11942880.0 19 11978904.0 0 3500 EVALUABLE BAM_REFUTED
659_dKM intergenic(NUDT12,EFNA5) ZNF311 chr5 103564394 chr6 28996190 TRANSLOCATION TRUTH_659_dKM_16 TRUTH truth 24.0 0 0 7 2832 hg19 5 102900095.0 6 28963967.0 0 7 UNEVALUABLE UNEVALUABLE
659_dKM SKIDA1 MLLT10 chr10 21516377 chr10 21639405 DELETION TRUTH_659_dKM_17 TRUTH truth 113.0 0 0 3390 2 hg19 10 21805306.0 10 21928334.0 0 2 UNEVALUABLE UNEVALUABLE
659_dKM RET NCOA4 chr10 43115591 chr10 46007138 DUPLICATION TRUTH_659_dKM_18 TRUTH truth 328.0 0 0 8642 99 hg19 10 43611039.0 10 51588682.0 0 99 EVALUABLE BAM_REFUTED
659_dKM NFAT5 DBF4B chr16 69691785 chr17 44750541 TRANSLOCATION TRUTH_659_dKM_19 TRUTH truth 53.0 0 0 1242 3409 hg19 16 69725688.0 17 42827909.0 0 1242 EVALUABLE BAM_REFUTED
659_dKM MYO1D EVPL chr17 32666417 chr17 76008903 DUPLICATION TRUTH_659_dKM_20 TRUTH truth 127.0 0 0 2 3273 hg19 17 30993435.0 17 74004984.0 0 2 UNEVALUABLE UNEVALUABLE
659_dKM AATF SOCS7 chr17 37035289 chr17 38352677 DUPLICATION TRUTH_659_dKM_21 TRUTH truth 72.0 0 0 7 2289 hg19 17 35392586.0 17 36508560.0 0 7 UNEVALUABLE UNEVALUABLE
659_dKM RAMP2 MAP3K14 chr17 42762431 chr17 45285437 DUPLICATION TRUTH_659_dKM_22 TRUTH truth 28.0 0 0 2074 696 hg19 17 40914449.0 17 43362804.0 0 696 EVALUABLE BAM_REFUTED
659_dKM MPP3 SDK2 chr17 43830087 chr17 73641272 DELETION TRUTH_659_dKM_23 TRUTH truth 66.0 0 0 919 0 hg19 17 41907455.0 17 71637411.0 0 0 UNEVALUABLE UNEVALUABLE
659_dKM ZNF440 ZNF439 chr19 11832108 chr19 11868043 DELETION TRUTH_659_dKM_24 TRUTH truth 114.0 0 0 4369 3599 hg19 19 11942923.0 19 11978858.0 0 3599 EVALUABLE BAM_REFUTED
659_dfA intergenic(AK4,DNAJC6) ZNF846 chr1 65239512 chr19 9757745 BND CALL_659_dfA_0 TP call 0.9954 0 0 9 1470 hg19 1 65705195.0 19 9868421.0 0 9 UNEVALUABLE UNEVALUABLE
659_dfA TOR1AIP2 FAM163A chr1 179846637 chr1 179751008 BND CALL_659_dfA_1 FP call 0.9347 0 0 1960 0 hg19 1 179815772.0 1 179720143.0 0 0 UNEVALUABLE UNEVALUABLE
659_dfA GFPT1 FBXO11 chr2 69345412 chr2 47813094 BND CALL_659_dfA_2 FP call 0.0671 0 0 75 340 hg19 2 69572544.0 2 48040233.0 0 75 EVALUABLE BAM_REFUTED
659_dfA NYAP2 CSNK1A1 chr2 225671230 chr5 149494825 BND CALL_659_dfA_3 FP call 0.0923 0 0 3 0 hg19 2 226535946.0 5 148874388.0 0 0 UNEVALUABLE UNEVALUABLE
659_dfA intergenic(PPARGC1A,DHX15) FBXO11 chr4 24430613 chr2 47812869 BND CALL_659_dfA_4 FP call 0.9199 0 0 15 308 hg19 4 24432236.0 2 48040008.0 0 15 UNEVALUABLE UNEVALUABLE
659_dfA DCP2 CSNK1A1 chr5 112987447 chr5 149494899 BND CALL_659_dfA_5 FP call 0.2337 0 0 5 0 hg19 5 112323144.0 5 148874462.0 0 0 UNEVALUABLE UNEVALUABLE
659_dfA ATG9B HOXA13 chr7 151017666 chr7 27200044 BND CALL_659_dfA_6 TP_DUP call 0.9613 0 0 1596 1100 hg19 7 150714753.0 7 27239663.0 0 1100 EVALUABLE BAM_REFUTED
659_dfA BICC1 SGMS1 chr10 58777256 chr10 50311302 BND CALL_659_dfA_7 FP call 0.1076 0 0 2 516 hg19 10 60537016.0 10 52071062.0 0 2 UNEVALUABLE UNEVALUABLE
659_dfA ENSG00000285837 intergenic(REEP3,CTNNA3) chr10 62376265 chr10 64684787 BND CALL_659_dfA_8 FP call 0.0005 0 0 1986 3 hg19 10 64136024.0 10 66444544.0 0 3 UNEVALUABLE UNEVALUABLE
659_dfA RAD51B TP53 chr14 68657027 chr17 7684526 BND CALL_659_dfA_9 FP call 0.0045 0 0 2 1 hg19 14 69123744.0 17 7587844.0 0 1 UNEVALUABLE UNEVALUABLE
659_dfA intergenic(RAD51B,ZFP36L1) TP53 chr14 68778973 chr17 7684439 BND CALL_659_dfA_10 FP call 0.1947 0 0 2 1 hg19 14 69245690.0 17 7587757.0 0 1 UNEVALUABLE UNEVALUABLE
659_dfA PHLPP2 KLK1 chr16 71649951 chr19 50822642 BND CALL_659_dfA_11 TP call 0.0054 0 0 1197 1613 hg19 16 71683854.0 19 51325898.0 0 1197 EVALUABLE BAM_REFUTED
659_dfA ZNF385C TMPRSS2 chr17 42051542 chr21 41470729 BND CALL_659_dfA_12 TP call 0.9901 0 0 0 1084 hg19 17 40203560.0 21 42842656.0 0 0 UNEVALUABLE UNEVALUABLE
659_dfA intergenic(AK4,DNAJC6) ZNF846 chr1 65239511 chr19 9757744 TRANSLOCATION TRUTH_659_dfA_13 TRUTH truth 24.0 0 0 9 1468 hg19 1 65705194.0 19 9868420.0 0 9 UNEVALUABLE UNEVALUABLE
659_dfA HOXA13 ATG9B chr7 27200043 chr7 151017665 INVERSION TRUTH_659_dfA_14 TRUTH truth 50.0 0 0 1106 1600 hg19 7 27239662.0 7 150714752.0 0 1106 EVALUABLE BAM_REFUTED
659_dfA PHLPP2 KLK1 chr16 71649950 chr19 50822641 TRANSLOCATION TRUTH_659_dfA_15 TRUTH truth 57.0 0 0 1198 1616 hg19 16 71683853.0 19 51325897.0 0 1198 EVALUABLE BAM_REFUTED
659_dfA ZNF385C TMPRSS2 chr17 42051541 chr21 41470728 TRANSLOCATION TRUTH_659_dfA_16 TRUTH truth 139.0 0 0 0 1084 hg19 17 40203559.0 21 42842655.0 0 0 UNEVALUABLE UNEVALUABLE
1173_DXK intergenic(POLE4,TACR1) RSPO3 chr2 75041444 chr6 127144122 BND CALL_1173_DXK_0 FP call 0.0 0 0 1 1 hg19 2 75268571.0 6 127465267.0 0 1 UNEVALUABLE UNEVALUABLE
1173_FM MTAP CDKN2B chr9 21899729 chr9 22005139 DEL CALL_1173_FM_0 FP call 0.024 0 0 3 3 hg19 9 21899728.0 9 22005138.0 0 3 UNEVALUABLE UNEVALUABLE
1173_FM HLA-DRB5 HLA-DRB1 chr6 32519662 chr6 32581733 DELETION TRUTH_1173_FM_1 TRUTH truth 35.0 4 0 348 1162 hg19 6 32487439.0 6 32549510.0 4 348 EVALUABLE BAM_CONFIRMED
1173_GXL DNAH12 ADRA1A chr3 57334787 chr8 26866527 BND CALL_1173_GXL_0 FP call 0.006 0 0 1352 863 hg19 3 57368815.0 8 26724044.0 0 863 EVALUABLE BAM_REFUTED
1173_GXL MACROH2A2 HLA-DRB1 chr10 70083451 chr6 32581577 BND CALL_1173_GXL_1 FP call 0.0001 0 0 0 1304 hg19 10 71843207.0 6 32549354.0 0 0 UNEVALUABLE UNEVALUABLE
1173_GXL SIK2 intergenic(ZNF486,ZNF737) chr11 111616283 chr19 20371230 BND CALL_1173_GXL_2 FP call 0.0145 0 0 276 1 hg19 11 111487007.0 19 20482039.0 0 1 UNEVALUABLE UNEVALUABLE
1173_GXL intergenic(KRT18,EIF4B) ARHGEF15 chr12 52960464 chr17 8312116 BND CALL_1173_GXL_3 TP call 0.9923 0 0 13 2711 hg19 12 53354248.0 17 8215434.0 0 13 UNEVALUABLE UNEVALUABLE
1173_GXL SLC25A21 FOXA1 chr14 37088701 chr14 37595026 DUP CALL_1173_GXL_4 FP call 0.0 0 0 1 888 hg19 14 37557906.0 14 38064231.0 0 1 UNEVALUABLE UNEVALUABLE
1173_GXL SLC2A4 KRT78 chr17 7282756 chr12 52839353 BND CALL_1173_GXL_5 TP_DUP call 0.984 0 0 164 1735 hg19 17 7186075.0 12 53233137.0 0 164 EVALUABLE BAM_REFUTED
1173_GXL SLC2A4 HDAC5 chr17 7284021 chr17 44087091 BND CALL_1173_GXL_6 FP call 0.1597 0 0 2513 1140 hg19 17 7187340.0 17 42164459.0 0 1140 EVALUABLE BAM_REFUTED
1173_GXL SLC2A4 ARHGEF15 chr17 7284578 chr17 8313302 DEL CALL_1173_GXL_7 TP call 0.885 0 0 2140 2318 hg19 17 7187897.0 17 8216620.0 0 2140 EVALUABLE BAM_REFUTED
1173_GXL LSM12 SLC2A4 chr17 44040409 chr17 7284651 BND CALL_1173_GXL_8 FP call 0.9792 0 0 398 2151 hg19 17 42117777.0 17 7187970.0 0 398 EVALUABLE BAM_REFUTED
1173_GXL GRN intergenic(KRT79,KRT78) chr17 44350466 chr12 52837231 BND CALL_1173_GXL_9 FP call 0.9909 0 0 1117 2 hg19 17 42427834.0 12 53231015.0 0 2 UNEVALUABLE UNEVALUABLE
1173_GXL ERG TMPRSS2 chr21 38506455 chr21 41506383 DEL CALL_1173_GXL_10 TP call 0.9996 0 0 0 10596 hg19 21 39878379.0 21 42878310.0 0 0 UNEVALUABLE UNEVALUABLE
1173_GXL KRT78 SLC2A4 chr12 52839351 chr17 7282755 TRANSLOCATION TRUTH_1173_GXL_11 TRUTH truth 34.0 0 0 1731 158 hg19 12 53233135.0 17 7186074.0 0 158 EVALUABLE BAM_REFUTED
1173_GXL intergenic(KRT18,EIF4B) ARHGEF15 chr12 52960463 chr17 8312115 TRANSLOCATION TRUTH_1173_GXL_12 TRUTH truth 84.0 0 0 13 2709 hg19 12 53354247.0 17 8215433.0 0 13 UNEVALUABLE UNEVALUABLE
1173_GXL SLC2A4 ARHGEF15 chr17 7284577 chr17 8313301 DELETION TRUTH_1173_GXL_13 TRUTH truth 52.0 0 0 2141 2319 hg19 17 7187896.0 17 8216619.0 0 2141 EVALUABLE BAM_REFUTED
1173_GXL ERG TMPRSS2 chr21 38506454 chr21 41506382 DELETION TRUTH_1173_GXL_14 TRUTH truth 91.0 0 0 0 10576 hg19 21 39878378.0 21 42878309.0 0 0 UNEVALUABLE UNEVALUABLE
1173_H2E FGA intergenic(CTSO,PDGFC) chr4 154585607 chr4 156084834 BND CALL_1173_H2E_0 FP call 0.0009 0 0 2517 1 hg19 4 155506759.0 4.0 157005986.0 0 1 UNEVALUABLE UNEVALUABLE
1173_H2E SLC25A5 intergenic(PDE1C,LSM5) chrX 119470901 chr7 32472385 BND CALL_1173_H2E_1 FP call 0.0 0 0 1268 243 hg19 X 118604864.0 7.0 32511997.0 0 243 EVALUABLE BAM_REFUTED
1173_H2E intergenic(.,.) MUC3A chrUn_JTFH01000054v1_decoy 3780 chr7 100956057 BND CALL_1173_H2E_2 FP call 0.0 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
1173_JLC RNF220 DFFB chr1 44456637 chr1 3858793 BND CALL_1173_JLC_0 TP_DUP call 0.8691 0 0 1 807 hg19 1 44922309.0 1.0 3775357.0 0 1 UNEVALUABLE UNEVALUABLE
1173_JLC LMNA SMG5 chr1 156131473 chr1 156260608 DUP CALL_1173_JLC_1 FP call 0.329 0 0 50 836 hg19 1 156101264.0 1.0 156230399.0 0 50 EVALUABLE BAM_REFUTED
1173_JLC WDR97 GRAMD4 chr8 144115486 chr22 46601402 BND CALL_1173_JLC_2 FP call 0.0043 0 0 1 18 hg19 8 145170389.0 22.0 46997299.0 0 1 UNEVALUABLE UNEVALUABLE
1173_JLC DAPK1 CASC3 chr9 87571505 chr17 40140613 BND CALL_1173_JLC_3 FP call 0.0002 2 0 18 652 hg19 9 90186420.0 17.0 38296866.0 2 18 UNEVALUABLE UNEVALUABLE
1173_JLC PTEN intergenic(PTEN,RNLS) chr10 87961302 chr10 87985153 DEL CALL_1173_JLC_4 FP call 0.0003 0 0 1601 2 hg19 10 89721059.0 10.0 89744910.0 0 2 UNEVALUABLE UNEVALUABLE
1173_JLC ANO2 NOP2 chr12 5878127 chr12 6560169 DUP CALL_1173_JLC_5 FP call 0.7833 0 0 1 1685 hg19 12 5987293.0 12.0 6669335.0 0 1 UNEVALUABLE UNEVALUABLE
1173_JLC PKD1 PKMYT1 chr16 2097415 chr16 2968677 DUP CALL_1173_JLC_6 TP call 0.175 0 0 2377 686 hg19 16 2147416.0 16.0 3018678.0 0 686 EVALUABLE BAM_REFUTED
1173_JLC intergenic(CHIC1,ZCCHC13) HLA-DRB1 chrX 73924000 chr6 32578856 BND CALL_1173_JLC_7 FP call 0.0 0 0 7 2902 hg19 X 73143835.0 6.0 32546633.0 0 7 UNEVALUABLE UNEVALUABLE
1173_JLC intergenic(.,.) MUC3A chrUn_JTFH01000054v1_decoy 3159 chr7 100952868 BND CALL_1173_JLC_8 FP call 0.0 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
1173_JLC DFFB RNF220 chr1 3858791 chr1 44456637 INVERSION TRUTH_1173_JLC_9 TRUTH truth 43.0 0 0 807 1 hg19 1 3775355.0 1.0 44922309.0 0 1 UNEVALUABLE UNEVALUABLE
1173_JLC PKD1 PKMYT1 chr16 2097414 chr16 2968676 DUPLICATION TRUTH_1173_JLC_10 TRUTH truth 30.0 0 0 2376 686 hg19 16 2147415.0 16.0 3018677.0 0 686 EVALUABLE BAM_REFUTED
1173_JXL DYSF HLA-DRB1 chr2 71603570 chr6 32579077 BND CALL_1173_JXL_0 FP call 0.0 0 0 7 3824 hg19 2.0 71830700.0 6.0 32546854.0 0 7 UNEVALUABLE UNEVALUABLE
1173_JXL ARFGAP3 PACSIN2 chr22 42806825 chr22 42882298 DUP CALL_1173_JXL_1 TP call 0.966 0 0 752 612 hg19 22.0 43202831.0 22.0 43278304.0 0 612 EVALUABLE BAM_REFUTED
1173_JXL intergenic(.,.) MUC3A chrUn_JTFH01001084v1_decoy 1341 chr7 100958578 BND CALL_1173_JXL_2 FP call 0.0 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
1173_JXL ARFGAP3 PACSIN2 chr22 42806824 chr22 42882297 DUPLICATION TRUTH_1173_JXL_3 TRUTH truth 38.0 0 0 752 612 hg19 22.0 43202830.0 22.0 43278303.0 0 612 EVALUABLE BAM_REFUTED
1173_LV7 PER3 intergenic(TRPC4AP,EDEM2) chr1 7827498 chr20 35099561 BND CALL_1173_LV7_0 TP call 0.9953 0 0 2007 9 hg19 1 7887558.0 20 33687364.0 0 9 UNEVALUABLE UNEVALUABLE
1173_LV7 intergenic(SULT1A1,NPIPB8) ENSG00000261832 chr16 28635633 chr16 28477535 BND CALL_1173_LV7_1 FP call 0.0053 0 0 4 1854 hg19 16 28646954.0 16 28488856.0 0 4 UNEVALUABLE UNEVALUABLE
1173_LV7 intergenic(SULT1A1,NPIPB8) EIF3C chr16 28636150 chr16 28723187 DEL CALL_1173_LV7_2 FP call 0.3247 0 0 0 2620 hg19 16 28647471.0 16 28734508.0 0 0 UNEVALUABLE UNEVALUABLE
1173_LV7 intergenic(WASH6P,.) POLE chrX 156030529 chr12 132675447 BND CALL_1173_LV7_3 FP call 0.0004 0 0 2 3303 hg19 X 155260194.0 12 133252033.0 0 2 UNEVALUABLE UNEVALUABLE
1173_LV7 PER3 intergenic(TRPC4AP,EDEM2) chr1 7827497 chr20 35099559 TRANSLOCATION TRUTH_1173_LV7_4 TRUTH truth 111.0 0 0 2007 9 hg19 1 7887557.0 20 33687362.0 0 9 UNEVALUABLE UNEVALUABLE
1173_NFO ATAD3C intergenic(ATAD3B,ATAD3A) chr1 1468477 chr1 1509283 DUP CALL_1173_NFO_0 FP call 0.0001 7 0 1943 1716 hg19 1 1403857.0 1 1444663.0 7 1716 EVALUABLE BAM_CONFIRMED
1173_NFO YEATS2 GGPS1 chr3 183780144 chr1 235342145 BND CALL_1173_NFO_1 FP call 0.0004 0 0 10 1159 hg19 3 183497932.0 1 235505460.0 0 10 UNEVALUABLE UNEVALUABLE
1173_NFO CDKN2B TPST1 chr9 22005142 chr7 66366540 BND CALL_1173_NFO_2 FP call 0.0 0 0 5 16 hg19 9 22005141.0 7 65831527.0 0 5 UNEVALUABLE UNEVALUABLE
1173_NFO SMARCA4 ZNF623 chr19 11003107 chr8 143639026 BND CALL_1173_NFO_3 TP_DUP call 0.0144 0 0 2979 25 hg19 19 11113783.0 8 144721196.0 0 25 EVALUABLE BAM_REFUTED
1173_NFO ZNF623 SMARCA4 chr8 143639022 chr19 11003106 TRANSLOCATION TRUTH_1173_NFO_4 TRUTH truth 81.0 0 0 25 2979 hg19 8 144721192.0 19 11113782.0 0 25 EVALUABLE BAM_REFUTED
1173_NWE PRKCI intergenic(SKIL,CLDN11) chr3 170281190 chr3 170405974 DUP CALL_1173_NWE_0 FP call 0.0 0 0 1018 9 hg19 3.0 169998978.0 3.0 170123762.0 0 9 UNEVALUABLE UNEVALUABLE
1173_NWE intergenic(LGSN,PTP4A1) PHF3 chr6 63355919 chr6 63721655 DUP CALL_1173_NWE_1 FP call 0.0 0 0 7 1852 hg19 6.0 64065824.0 6.0 64431551.0 0 7 UNEVALUABLE UNEVALUABLE
1173_NWE CRYBG1 intergenic(QRSL1,CD24) chr6 106553460 chr6 106945834 DUP CALL_1173_NWE_2 FP call 0.042 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
1173_NWE ASIC3 POU2F2 chr7 151050545 chr19 42114507 BND CALL_1173_NWE_3 TP call 0.9884 0 0 2416 5 hg19 7.0 150747632.0 19.0 42618659.0 0 5 UNEVALUABLE UNEVALUABLE
1173_NWE QSOX2 ABCA2 chr9 136237278 chr9 137018997 DUP CALL_1173_NWE_4 FP call 0.8134 0 0 2 1725 hg19 9.0 139129124.0 9.0 139913449.0 0 2 UNEVALUABLE UNEVALUABLE
1173_NWE OTUB1 BAD chr11 63995034 chr11 64284262 DUP CALL_1173_NWE_5 FP call 0.0831 0 0 5 2181 hg19 11.0 63762506.0 11.0 64051734.0 0 5 UNEVALUABLE UNEVALUABLE
1173_NWE intergenic(YAP1,BIRC3) BIRC3 chr11 102260997 chr11 102324495 DUP CALL_1173_NWE_6 TP call 0.0125 0 0 2 7612 hg19 11.0 102131728.0 11.0 102195226.0 0 2 UNEVALUABLE UNEVALUABLE
1173_NWE ANKS1B ATR chr12 99667293 chr3 142540993 BND CALL_1173_NWE_7 FP call 0.0 0 0 9 1888 hg19 12.0 100061071.0 3.0 142259835.0 0 9 UNEVALUABLE UNEVALUABLE
1173_NWE STK24 SLC15A1 chr13 98453178 chr13 98725755 DUP CALL_1173_NWE_8 FP call 0.9453 0 0 447 672 hg19 13.0 99105432.0 13.0 99378009.0 0 447 EVALUABLE BAM_REFUTED
1173_NWE intergenic(NFATC4,NYNRIN) NYNRIN chr14 24379965 chr14 24408213 DUP CALL_1173_NWE_9 TP call 0.9682 0 0 2 2736 hg19 14.0 24849171.0 14.0 24877419.0 0 2 UNEVALUABLE UNEVALUABLE
1173_NWE UBR1 TUBGCP4 chr15 43075939 chr15 43400149 DUP CALL_1173_NWE_10 FP call 0.0957 0 0 5 1544 hg19 15.0 43368137.0 15.0 43692347.0 0 5 UNEVALUABLE UNEVALUABLE
1173_NWE intergenic(ENSG00000266302,TNFRSF13B) FLCN chr17 16880462 chr17 17213241 DUP CALL_1173_NWE_11 FP call 0.0 0 0 0 1628 hg19 17.0 16783776.0 17.0 17116555.0 0 0 UNEVALUABLE UNEVALUABLE
1173_NWE DCXR intergenic(ARSJ,UGT8) chr17 82037535 chr4 114496249 BND CALL_1173_NWE_12 TP_DUP call 0.8521 0 0 948 0 hg19 17.0 79995411.0 4.0 115417405.0 0 0 UNEVALUABLE UNEVALUABLE
1173_NWE PIK3R2 KXD1 chr19 18169519 chr19 18568002 DUP CALL_1173_NWE_13 FP call 0.7675 0 0 1596 355 hg19 19.0 18280329.0 19.0 18678812.0 0 355 EVALUABLE BAM_REFUTED
1173_NWE SDHAF1 MAP3K14 chr19 35996206 chr17 45270558 BND CALL_1173_NWE_14 TP_DUP call 0.3846 0 0 82 3577 hg19 19.0 36487108.0 17.0 43347925.0 0 82 EVALUABLE BAM_REFUTED
1173_NWE intergenic(ARSJ,UGT8) DCXR chr4 114496248 chr17 82037534 TRANSLOCATION TRUTH_1173_NWE_15 TRUTH truth 36.0 0 0 0 954 hg19 4.0 115417404.0 17.0 79995410.0 0 0 UNEVALUABLE UNEVALUABLE
1173_NWE ASIC3 POU2F2 chr7 151050544 chr19 42114506 TRANSLOCATION TRUTH_1173_NWE_16 TRUTH truth 79.0 0 0 2415 5 hg19 7.0 150747631.0 19.0 42618658.0 0 5 UNEVALUABLE UNEVALUABLE
1173_NWE intergenic(YAP1,BIRC3) BIRC3 chr11 102260996 chr11 102324494 DUPLICATION TRUTH_1173_NWE_17 TRUTH truth 91.0 0 0 2 7604 hg19 11.0 102131727.0 11.0 102195225.0 0 2 UNEVALUABLE UNEVALUABLE
1173_NWE intergenic(NFATC4,NYNRIN) NYNRIN chr14 24379964 chr14 24408212 DUPLICATION TRUTH_1173_NWE_18 TRUTH truth 62.0 0 0 1 2734 hg19 14.0 24849170.0 14.0 24877418.0 0 1 UNEVALUABLE UNEVALUABLE
1173_NWE MAP3K14 SDHAF1 chr17 45270555 chr19 35996205 TRANSLOCATION TRUTH_1173_NWE_19 TRUTH truth 44.0 0 0 3555 82 hg19 17.0 43347922.0 19.0 36487107.0 0 82 EVALUABLE BAM_REFUTED
659_1q OXSR1 BCR chr3 38205035 chr22 23283544 BND CALL_659_1q_0 FP call 0.0 0 0 3 11662 hg19 3 38246526.0 22 23625731.0 0 3 UNEVALUABLE UNEVALUABLE
659_1q TACC3 FGFR3 chr4 1741171 chr4 1807485 DUP CALL_659_1q_1 TP call 0.9998 0 0 544 13551 hg19 4 1742898.0 4 1809212.0 0 544 EVALUABLE BAM_REFUTED
659_1q RIMS2 RPS6 chr8 103768769 chr9 19378375 BND CALL_659_1q_2 FP call 0.0024 0 0 85 1107 hg19 8 104780997.0 9 19378373.0 0 85 EVALUABLE BAM_REFUTED
659_1q intergenic(FZD8,ANKRD30A) NAMPT chr10 36522876 chr7 106250878 BND CALL_659_1q_3 FP call 0.0 1 0 1171 222 hg19 10 36811804.0 7 105891324.0 1 222 EVALUABLE BAM_AMBIGUOUS
659_1q intergenic(AKAP11,TNFSF11) PTPRS chr13 42409890 chr19 5212188 BND CALL_659_1q_4 FP call 0.0 0 0 1 2639 hg19 13 42984026.0 19 5212199.0 0 1 UNEVALUABLE UNEVALUABLE
659_1q ERCC5 intergenic(SLITRK6,SLITRK5) chr13 102846589 chr13 87055228 BND CALL_659_1q_5 FP call 0.8827 0 0 929 0 hg19 13 103498939.0 13 87707483.0 0 0 UNEVALUABLE UNEVALUABLE
659_1q TACC3 FGFR3 chr4 1741170 chr4 1807484 DUPLICATION TRUTH_659_1q_6 TRUTH truth 840.0 0 0 544 13568 hg19 4 1742897.0 4 1809211.0 0 544 EVALUABLE BAM_REFUTED
659_91 intergenic(SRGAP2C,H3-7) NELFCD chr1 121487065 chr20 58991375 BND CALL_659_91_0 FP call 0.4305 0 0 0 1511 hg19 1 121228863.0 20 57566430.0 0 0 UNEVALUABLE UNEVALUABLE
659_91 SLC6A18 TERT chr5 1231058 chr5 1255364 BND CALL_659_91_1 FP call 0.0156 0 0 2 1953 hg19 5 1231173.0 5 1255479.0 0 2 UNEVALUABLE UNEVALUABLE
659_91 intergenic(DNAH5,TRIO) H3Y1 chr5 14083945 chr5 17655130 BND CALL_659_91_2 FP call 0.7848 0 0 0 0 hg19 5 14084054.0 5 17655239.0 0 0 UNEVALUABLE UNEVALUABLE
659_91 CDH9 intergenic(NPR3,TARS1) chr5 26915789 chr5 33006477 DEL CALL_659_91_3 TP call 0.8231 0 0 582 10 hg19 5 26915897.0 5 33006583.0 0 10 UNEVALUABLE UNEVALUABLE
659_91 CDH9 LRIG3 chr5 27097594 chr12 58877706 BND CALL_659_91_4 TP call 0.2449 0 0 2 1760 hg19 5 27097701.0 12 59271488.0 0 2 UNEVALUABLE UNEVALUABLE
659_91 PDZD2 LRIG3 chr5 31817061 chr12 58887836 BND CALL_659_91_5 FP call 0.8334 0 0 11 957 hg19 5 31817168.0 12 59281618.0 0 11 UNEVALUABLE UNEVALUABLE
659_91 intergenic(C1QTNF3-AMACR,RAI14) LRIG3 chr5 34189903 chr12 58877507 BND CALL_659_91_6 FP call 0.2852 0 0 697 1759 hg19 5 34190008.0 12 59271289.0 0 697 EVALUABLE BAM_REFUTED
659_91 HACE1 intergenic(HACE1,LIN28B) chr6 104859589 chr6 104872321 DEL CALL_659_91_7 FP call 0.0841 0 0 306 16 hg19 6 105307464.0 6 105320196.0 0 16 UNEVALUABLE UNEVALUABLE
659_91 intergenic(PREP,PRDM1) PRDM1 chr6 105506847 chr6 106086521 DUP CALL_659_91_8 FP call 0.9011 0 0 2 927 hg19 6 105954722.0 6 106534396.0 0 2 UNEVALUABLE UNEVALUABLE
659_91 SYNE1 ITPR1 chr6 152628296 chr3 4596333 BND CALL_659_91_9 FP call 0.0879 0 0 483 0 hg19 6 152949431.0 3 4638017.0 0 0 UNEVALUABLE UNEVALUABLE
659_91 SNX16 IL7 chr8 81810831 chr8 78717466 BND CALL_659_91_10 TP_DUP call 0.9831 0 0 2 628 hg19 8 82723066.0 8 79629701.0 0 2 UNEVALUABLE UNEVALUABLE
659_91 intergenic(JRKL,CNTN5) ENSG00000290263 chr11 97607972 chr4 2240507 BND CALL_659_91_11 TP_DUP call 0.8661 0 0 0 1828 hg19 11 97478972.0 4 2242234.0 0 0 UNEVALUABLE UNEVALUABLE
659_91 KIF5A intergenic(SRGAP1,KICS2) chr12 57571370 chr12 64168209 BND CALL_659_91_12 FP call 0.6065 0 0 379 15 hg19 12 57965153.0 12 64561989.0 0 15 UNEVALUABLE UNEVALUABLE
659_91 FAM222B PDK2 chr17 28814093 chr17 50109302 DEL CALL_659_91_13 TP call 0.874 0 0 12 416 hg19 17 27141111.0 17 48186666.0 0 12 UNEVALUABLE UNEVALUABLE
659_91 FLOT2 intergenic(GOSR1,CRLF3) chr17 28882636 chr17 30559907 DUP CALL_659_91_14 FP call 0.8643 0 0 1408 1254 hg19 17 27209654.0 17 28886925.0 0 1254 EVALUABLE BAM_REFUTED
659_91 MYO18A intergenic(RGS9,AXIN2) chr17 29096812 chr17 65423966 DUP CALL_659_91_15 FP call 0.1368 0 0 1785 2 hg19 17 27423830.0 17 63420084.0 0 2 UNEVALUABLE UNEVALUABLE
659_91 SSH2 FGFR1 chr17 29852394 chr8 38468510 BND CALL_659_91_16 FP call 0.042 0 0 24 610 hg19 17 28179412.0 8 38326028.0 0 24 EVALUABLE BAM_REFUTED
659_91 TEX14 HAS1 chr17 58601917 chr19 51720374 BND CALL_659_91_17 FP call 0.0033 0 0 920 164 hg19 17 56679278.0 19 52223627.0 0 164 EVALUABLE BAM_REFUTED
659_91 ENSG00000125695 SMARCD2 chr17 63723877 chr17 63837562 BND CALL_659_91_18 FP call 0.0056 0 0 105 1025 hg19 17 61801237.0 17 61914922.0 0 105 EVALUABLE BAM_REFUTED
659_91 TEX2 CRLF3 chr17 64200842 chr17 30796230 BND CALL_659_91_19 FP call 0.246 0 0 0 625 hg19 17 62278202.0 17 29123248.0 0 0 UNEVALUABLE UNEVALUABLE
659_91 PRKCA NUFIP2 chr17 66751788 chr17 29286767 BND CALL_659_91_20 FP call 0.0143 0 0 1 2414 hg19 17 64747906.0 17 27613785.0 0 1 UNEVALUABLE UNEVALUABLE
659_91 intergenic(KCNJ2,SOX9) SOX9 chr17 70364922 chr17 72126048 DEL CALL_659_91_21 FP call 0.1671 0 0 0 2 hg19 17 68361063.0 17 70122189.0 0 0 UNEVALUABLE UNEVALUABLE
659_91 KIF19 UNC13D chr17 74350485 chr17 75843472 DEL CALL_659_91_22 FP call 0.0031 0 0 1592 3503 hg19 17 72346624.0 17 73839553.0 0 1592 EVALUABLE BAM_REFUTED
659_91 CD300A CARD14 chr17 74473848 chr17 80184264 DEL CALL_659_91_23 FP call 0.0195 0 0 1591 1250 hg19 17 72469987.0 17 78158063.0 0 1250 EVALUABLE BAM_REFUTED
659_91 PCSK4 intergenic(CA11,NTN5) chr19 1490293 chr19 48654496 DUP CALL_659_91_24 FP call 0.9063 0 0 1363 5 hg19 19 1490292.0 19 49157753.0 0 5 UNEVALUABLE UNEVALUABLE
659_91 POLN intergenic(JRKL,CNTN5) chr4 2240506 chr11 97607971 TRANSLOCATION TRUTH_659_91_25 TRUTH truth 52.0 0 0 1828 0 hg19 4 2242233.0 11 97478971.0 0 0 UNEVALUABLE UNEVALUABLE
659_91 CDH9 intergenic(NPR3,TARS1) chr5 26915788 chr5 33006476 DELETION TRUTH_659_91_26 TRUTH truth 33.0 0 0 582 10 hg19 5 26915896.0 5 33006582.0 0 10 UNEVALUABLE UNEVALUABLE
659_91 CDH9 LRIG3 chr5 27097593 chr12 58877703 TRANSLOCATION TRUTH_659_91_27 TRUTH truth 70.0 0 0 2 1760 hg19 5 27097700.0 12 59271485.0 0 2 UNEVALUABLE UNEVALUABLE
659_91 IL7 SNX16 chr8 78717464 chr8 81810831 INVERSION TRUTH_659_91_28 TRUTH truth 43.0 0 0 628 2 hg19 8 79629699.0 8 82723066.0 0 2 UNEVALUABLE UNEVALUABLE
659_91 FAM222B PDK2 chr17 28814092 chr17 50109301 DELETION TRUTH_659_91_29 TRUTH truth 31.0 0 0 12 417 hg19 17 27141110.0 17 48186665.0 0 12 UNEVALUABLE UNEVALUABLE
659_Dl GPN1 intergenic(SLC4A1AP,MRPL33) chr2 27638984 chr2 27764387 DUP CALL_659_Dl_0 FP call 0.0363 0 0 356 3 hg19 2 27861851.0 2 27987254.0 0 3 UNEVALUABLE UNEVALUABLE
659_Dl intergenic(SOS1,CDKL4) ENSG00000285901 chr2 39138339 chr12 4301893 BND CALL_659_Dl_1 FP call 0.0 0 0 2 1 hg19 2 39365480.0 12 4411059.0 0 1 UNEVALUABLE UNEVALUABLE
659_Dl PPARG intergenic(RAF1,TMEM40) chr3 12344970 chr3 12670343 DUP CALL_659_Dl_2 FP call 0.0263 0 0 0 4 hg19 3 12386469.0 3 12711842.0 0 0 UNEVALUABLE UNEVALUABLE
659_Dl TACC3 FGFR3 chr4 1739500 chr4 1807209 DUP CALL_659_Dl_3 FP call 0.0014 0 0 620 14197 hg19 4 1741227.0 4 1808936.0 0 620 EVALUABLE BAM_REFUTED
659_Dl NEDD9 intergenic(EYS,ADGRB3) chr6 11185643 chr6 67124771 BND CALL_659_Dl_4 FP call 0.9973 0 0 2011 0 hg19 6 11185876.0 6 67834664.0 0 0 UNEVALUABLE UNEVALUABLE
659_Dl PRSS16 TULP4 chr6 27247932 chr6 158495846 BND CALL_659_Dl_5 TP call 0.1197 0 0 1482 0 hg19 6 27215711.0 6 158916878.0 0 0 UNEVALUABLE UNEVALUABLE
659_Dl COL19A1 PTEN chr6 69955586 chr10 87971622 BND CALL_659_Dl_6 FP call 0.0 0 0 6 0 hg19 6 70665478.0 10 89731379.0 0 0 UNEVALUABLE UNEVALUABLE
659_Dl TIAM2 PRSS16 chr6 155207082 chr6 27250685 BND CALL_659_Dl_7 FP call 0.9776 0 0 2 1637 hg19 6 155528216.0 6 27218464.0 0 2 UNEVALUABLE UNEVALUABLE
659_Dl intergenic(TBX3,MED13L) WT1 chr12 115737910 chr11 32388090 BND CALL_659_Dl_8 FP call 0.0 0 0 1 2 hg19 12 116175715.0 11 32409636.0 0 1 UNEVALUABLE UNEVALUABLE
659_Dl CCDC196 GPHN chr14 66498417 chr14 66787702 DEL CALL_659_Dl_9 FP call 0.1795 0 0 0 14 hg19 14 66965135.0 14 67254420.0 0 0 UNEVALUABLE UNEVALUABLE
659_Dl ZNF653 intergenic(KCNN4,LYPD5) chr19 11484132 chr19 43781412 BND CALL_659_Dl_10 FP call 0.3859 0 0 1379 82 hg19 19 11594947.0 19 44285564.0 0 82 EVALUABLE BAM_REFUTED
659_Dl intergenic(DEFB123,DEFB124) HCK chr20 31456122 chr20 32101356 BND CALL_659_Dl_11 FP call 0.1083 0 0 14 744 hg19 20 30043925.0 20 30689159.0 0 14 UNEVALUABLE UNEVALUABLE
659_Dl ASXL1 ENSG00000286022 chr20 32431647 chr20 2218946 BND CALL_659_Dl_12 FP call 0.0009 0 0 3578 0 hg19 20 31019450.0 20 2199592.0 0 0 UNEVALUABLE UNEVALUABLE
659_Dl DNMT3B intergenic(JAG1,BTBD3) chr20 32787217 chr20 11848294 BND CALL_659_Dl_13 FP call 0.0002 0 0 1554 0 hg19 20 31375023.0 20 11828942.0 0 0 UNEVALUABLE UNEVALUABLE
659_Dl intergenic(ENSG00000249209,MRPS6) PPARG chr21 33972297 chr3 12333978 BND CALL_659_Dl_14 FP call 0.0 0 0 17 0 hg19 21 35344598.0 3 12375477.0 0 0 UNEVALUABLE UNEVALUABLE
659_Dl BCL2L13 TOM1 chr22 17689061 chr22 35310990 DEL CALL_659_Dl_15 FP call 0.5372 0 0 676 2 hg19 22 18171827.0 22 35706983.0 0 2 UNEVALUABLE UNEVALUABLE
659_Dl TXNRD2 PANX2 chr22 19926739 chr22 50178236 DUP CALL_659_Dl_16 FP call 0.2116 0 0 43 1978 hg19 22 19914262.0 22 50616665.0 0 43 EVALUABLE BAM_REFUTED
659_Dl intergenic(BCR,IGLL1) HSCB chr22 23568090 chr22 28744638 DUP CALL_659_Dl_17 FP call 0.3081 0 0 8 285 hg19 22 23910277.0 22 29140626.0 0 8 UNEVALUABLE UNEVALUABLE
659_Dl CRYBA4 ZNF280B chr22 26628601 chr22 22489335 BND CALL_659_Dl_18 FP call 0.1073 0 0 748 1854 hg19 22 27024565.0 22 22843660.0 0 748 EVALUABLE BAM_REFUTED
659_Dl PRR14L PRR5-ARHGAP8 chr22 31712522 chr22 44727426 DEL CALL_659_Dl_19 FP call 0.0011 1 1 2485 2 hg19 22 32108508.0 22 45123306.0 2 2 UNEVALUABLE UNEVALUABLE
659_Dl FOXRED2 intergenic(TBC1D22A,TAFA5) chr22 36506101 chr22 47528828 BND CALL_659_Dl_20 TP call 0.0305 0 0 1815 22 hg19 22 36902148.0 22 47924577.0 0 22 EVALUABLE BAM_REFUTED
659_Dl PRSS16 TULP4 chr6 27247930 chr6 158495846 INVERSION TRUTH_659_Dl_21 TRUTH truth 35.0 0 0 1482 0 hg19 6 27215709.0 6 158916878.0 0 0 UNEVALUABLE UNEVALUABLE
659_Dl GAB4 intergenic(CRYBA4,MN1) chr22 17008112 chr22 26633606 DELETION TRUTH_659_Dl_22 TRUTH truth 39.0 0 0 821 8 hg19 22 17489002.0 22 27029570.0 0 8 UNEVALUABLE UNEVALUABLE
659_Dl HPS4 SLC5A4 chr22 26471648 chr22 32231075 DUPLICATION TRUTH_659_Dl_23 TRUTH truth 24.0 0 0 10 302 hg19 22 26867614.0 22 32627062.0 0 10 UNEVALUABLE UNEVALUABLE
659_Dl FOXRED2 intergenic(TBC1D22A,TAFA5) chr22 36506100 chr22 47528827 INVERSION TRUTH_659_Dl_24 TRUTH truth 25.0 0 0 1815 22 hg19 22 36902147.0 22 47924576.0 0 22 EVALUABLE BAM_REFUTED
659_Em LIN28A ARID1A chr1 26421867 chr1 26773644 BND CALL_659_Em_0 FP call 0.057 0 0 2 5398 hg19 1 26748358.0 1 27100135.0 0 2 UNEVALUABLE UNEVALUABLE
659_Em RNF220 PLK3 chr1 44640943 chr1 44803327 DEL CALL_659_Em_1 TP call 0.6188 0 0 1 1790 hg19 1 45106615.0 1 45268999.0 0 1 UNEVALUABLE UNEVALUABLE
659_Em intergenic(RFT1,PRKCD) ETV6 chr3 53150501 chr12 11774257 BND CALL_659_Em_2 FP call 0.0028 0 0 0 0 hg19 3 53184517.0 12 11927191.0 0 0 UNEVALUABLE UNEVALUABLE
659_Em SOX4 intergenic(SOX4,PRL) chr6 21595169 chr6 21774843 DUP CALL_659_Em_3 FP call 0.7296 0 0 2585 6 hg19 6 21595400.0 6 21775074.0 0 6 UNEVALUABLE UNEVALUABLE
659_Em SAMD3 PEX7 chr6 130144612 chr6 136903224 DUP CALL_659_Em_4 TP call 0.9482 0 0 803 0 hg19 6 130465757.0 6 137224362.0 0 0 UNEVALUABLE UNEVALUABLE
659_Em IQCE AMZ1 chr7 2607255 chr7 2707921 DUP CALL_659_Em_5 FP call 0.0015 0 0 1373 58 hg19 7 2646889.0 7 2747555.0 0 58 EVALUABLE BAM_REFUTED
659_Em ERLIN2 NSD3 chr8 37744372 chr8 38333518 DUP CALL_659_Em_6 TP call 0.1985 0 0 683 4 hg19 8 37601890.0 8 38191036.0 0 4 UNEVALUABLE UNEVALUABLE
659_Em NET1 TASOR2 chr10 5420893 chr10 5762619 DUP CALL_659_Em_7 FP call 0.7836 0 0 8 364 hg19 10 5462856.0 10 5804582.0 0 8 UNEVALUABLE UNEVALUABLE
659_Em SH3PXD2A intergenic(LMO4,PKN2) chr10 103613047 chr1 88108592 BND CALL_659_Em_8 TP_DUP call 0.9986 0 0 889 0 hg19 10 105372804.0 1 88574275.0 0 0 UNEVALUABLE UNEVALUABLE
659_Em PLPP4 TACC2 chr10 120533434 chr10 122086124 DUP CALL_659_Em_9 TP call 0.9973 0 0 0 3273 hg19 10 122292946.0 10 123845639.0 0 0 UNEVALUABLE UNEVALUABLE
659_Em ETV6 LRP6 chr12 11802280 chr12 12172349 DUP CALL_659_Em_10 FP call 0.622 0 0 1 0 hg19 12 11955214.0 12 12325283.0 0 0 UNEVALUABLE UNEVALUABLE
659_Em intergenic(TRIM9,TMX1) ARID1A chr14 51213752 chr1 26773639 BND CALL_659_Em_11 FP call 0.0163 0 0 1 5396 hg19 14 51680470.0 1 27100130.0 0 1 UNEVALUABLE UNEVALUABLE
659_Em FRMD6 ARID1A chr14 51699558 chr1 26773662 BND CALL_659_Em_12 TP_DUP call 0.8065 0 0 0 5382 hg19 14 52166276.0 1 27100153.0 0 0 UNEVALUABLE UNEVALUABLE
659_Em CRTC3 SV2B chr15 90604405 chr15 91209232 DUP CALL_659_Em_13 FP call 0.0196 0 0 315 6 hg19 15 91147637.0 15 91752462.0 0 6 UNEVALUABLE UNEVALUABLE
659_Em SLC12A5 RFX1 chr20 46043910 chr19 13966832 BND CALL_659_Em_14 FP call 0.0103 0 0 970 583 hg19 20 44672549.0 19 14077644.0 0 583 EVALUABLE BAM_REFUTED
659_Em UMODL1 ENSG00000284431 chr21 42135045 chr22 40405260 BND CALL_659_Em_15 FP call 0.989 0 0 8 1323 hg19 21 43555155.0 22 40801264.0 0 8 UNEVALUABLE UNEVALUABLE
659_Em EWSR1 ACO2 chr22 29288836 chr22 41494858 DUP CALL_659_Em_16 FP call 0.8118 0 0 8919 28 hg19 22 29684825.0 22 41890862.0 0 28 EVALUABLE BAM_REFUTED
659_Em ERLIN2 NSD3 chr8 37744371 chr8 38333517 DUPLICATION TRUTH_659_Em_17 TRUTH truth 55.0 0 0 683 4 hg19 8 37601889.0 8 38191035.0 0 4 UNEVALUABLE UNEVALUABLE
659_Em C11orf80 KDM2A chr11 66816156 chr11 67173057 DUPLICATION TRUTH_659_Em_18 TRUTH truth 26.0 0 0 747 22 hg19 11 66583627.0 11 66940528.0 0 22 EVALUABLE BAM_REFUTED
659_Em intergenic(LMO4,PKN2) SH3PXD2A chr1 88108591 chr10 103613046 TRANSLOCATION TRUTH_659_Em_19 TRUTH truth 72.0 0 0 0 889 hg19 1 88574274.0 10 105372803.0 0 0 UNEVALUABLE UNEVALUABLE
659_Em PLPP4 TACC2 chr10 120533433 chr10 122086123 DUPLICATION TRUTH_659_Em_20 TRUTH truth 26.0 0 0 0 3274 hg19 10 122292945.0 10 123845638.0 0 0 UNEVALUABLE UNEVALUABLE
659_Em SAMD3 PEX7 chr6 130144611 chr6 136903223 DUPLICATION TRUTH_659_Em_21 TRUTH truth 42.0 0 0 803 0 hg19 6 130465756.0 6 137224361.0 0 0 UNEVALUABLE UNEVALUABLE
659_Em RNF220 PLK3 chr1 44640942 chr1 44803326 DELETION TRUTH_659_Em_22 TRUTH truth 42.0 0 0 1 1792 hg19 1 45106614.0 1 45268998.0 0 1 UNEVALUABLE UNEVALUABLE
659_Em ARID1A FRMD6 chr1 26773661 chr14 51699557 TRANSLOCATION TRUTH_659_Em_23 TRUTH truth 262.0 0 0 5384 0 hg19 1 27100152.0 14 52166275.0 0 0 UNEVALUABLE UNEVALUABLE
659_ND PATJ ANXA4 chr1 62117833 chr2 69804572 BND CALL_659_ND_0 TP call 0.9382 0 0 323 563 hg19 1 62583505.0 2 70031704.0 0 323 EVALUABLE BAM_REFUTED
659_ND TPR intergenic(PLA2G4A,BRINP3) chr1 186359919 chr1 188786315 DEL CALL_659_ND_1 TP call 0.9852 0 0 1107 0 hg19 1 186329051.0 1 188755446.0 0 0 UNEVALUABLE UNEVALUABLE
659_ND intergenic(SOX2,ATP11B) MYB chr3 182605024 chr6 135218885 BND CALL_659_ND_2 FP call 0.0 0 0 9 0 hg19 3 182322812.0 6 135540023.0 0 0 UNEVALUABLE UNEVALUABLE
659_ND HLA-C HLA-B chr6 31270127 chr6 31355431 DEL CALL_659_ND_3 FP call 0.0 0 0 5280 6477 hg19 6 31237904.0 6 31323208.0 0 5280 EVALUABLE BAM_REFUTED
659_ND intergenic(OR56A1,OR56B4) NTRK3 chr11 6099576 chr15 87987474 BND CALL_659_ND_4 FP call 0.0 0 0 1 0 hg19 11 6120806.0 15 88530705.0 0 0 UNEVALUABLE UNEVALUABLE
659_ND TMPRSS2 DNAJC21 chr21 41498137 chr5 34934575 BND CALL_659_ND_5 TP_DUP call 0.2021 0 0 9950 29 hg19 21 42870064.0 5 34934680.0 0 29 EVALUABLE BAM_REFUTED
659_ND intergenic(RPS6KA3,CNKSR2) ATRX chrX 21280154 chrX 77522291 DUP CALL_659_ND_6 FP call 0.0 0 0 0 803 hg19 X 21298272.0 X 76777769.0 0 0 UNEVALUABLE UNEVALUABLE
659_ND intergenic(CT83,KLHL13) TMPRSS2 chrX 117561081 chr21 41498038 BND CALL_659_ND_7 FP call 0.0089 0 0 0 9721 hg19 X 116695044.0 21 42869965.0 0 0 UNEVALUABLE UNEVALUABLE
659_ND PATJ ANXA4 chr1 62117832 chr2 69804571 TRANSLOCATION TRUTH_659_ND_8 TRUTH truth 43.0 0 0 324 563 hg19 1 62583504.0 2 70031703.0 0 324 EVALUABLE BAM_REFUTED
659_ND TPR intergenic(PLA2G4A,BRINP3) chr1 186359918 chr1 188786314 DELETION TRUTH_659_ND_9 TRUTH truth 33.0 0 0 1107 0 hg19 1 186329050.0 1 188755445.0 0 0 UNEVALUABLE UNEVALUABLE
659_ND DNAJC21 TMPRSS2 chr5 34934574 chr21 41498136 TRANSLOCATION TRUTH_659_ND_10 TRUTH truth 131.0 0 0 29 9938 hg19 5 34934679.0 21 42870063.0 0 29 EVALUABLE BAM_REFUTED
659_QC intergenic(RBAK-RBAKDN,WIPI2) PMS2 chr7 5123595 chr7 6004022 BND CALL_659_QC_0 TP call 0.5409 0 0 15 1268 hg19 7 5163226.0 7 6043653.0 0 15 UNEVALUABLE UNEVALUABLE
659_QC NAMPT intergenic(FZD8,ANKRD30A) chr7 106250859 chr10 36522964 BND CALL_659_QC_1 FP call 0.0 0 0 266 873 hg19 7 105891305.0 10 36811892.0 0 266 EVALUABLE BAM_REFUTED
659_QC DCDC1 ESPL1 chr11 31344905 chr12 53290925 BND CALL_659_QC_2 FP call 0.0 0 0 0 834 hg19 11 31366452.0 12 53684709.0 0 0 UNEVALUABLE UNEVALUABLE
659_QC HOXC13 BCLAF3 chr12 53940607 chrX 19965663 BND CALL_659_QC_3 FP call 0.005 0 0 1 900 hg19 12 54334391.0 X 19983781.0 0 1 UNEVALUABLE UNEVALUABLE
659_QC LRP1 intergenic(CPM,CPSF6) chr12 57159958 chr12 69142531 BND CALL_659_QC_4 FP call 0.0 0 0 759 10 hg19 12 57553741.0 12 69536311.0 0 10 UNEVALUABLE UNEVALUABLE
659_QC KIF5A intergenic(SP7,SP1) chr12 57569384 chr12 53375316 BND CALL_659_QC_5 FP call 0.9766 0 0 1585 11 hg19 12 57963167.0 12 53769100.0 0 11 UNEVALUABLE UNEVALUABLE
659_QC intergenic(KIF5A,PIP4K2C) MARCHF9 chr12 57587736 chr12 57758123 BND CALL_659_QC_6 TP call 0.9595 0 0 2 1273 hg19 12 57981519.0 12 58151906.0 0 2 UNEVALUABLE UNEVALUABLE
659_QC AGAP2 NUP107 chr12 57727481 chr12 68694482 DEL CALL_659_QC_7 FP call 0.0012 0 0 3364 1 hg19 12 58121264.0 12 69088262.0 0 1 UNEVALUABLE UNEVALUABLE
659_QC intergenic(MDM1,RAP1B) CFAP47 chr12 68592842 chrX 35956193 BND CALL_659_QC_8 FP call 0.999 0 0 10 263 hg19 12 68986622.0 X 35974310.0 0 10 UNEVALUABLE UNEVALUABLE
659_QC NUP107 LRP1 chr12 68735904 chr12 57159909 BND CALL_659_QC_9 FP call 0.0003 0 0 69 759 hg19 12 69129684.0 12 57553692.0 0 69 EVALUABLE BAM_REFUTED
659_QC PPFIA2 OFD1 chr12 81545114 chrX 13751258 BND CALL_659_QC_10 TP call 0.9874 0 0 0 176 hg19 12 81938893.0 X 13769377.0 0 0 UNEVALUABLE UNEVALUABLE
659_QC TMTC2 ENSG00000287908 chr12 82871168 chr12 57624380 BND CALL_659_QC_11 FP call 0.0018 0 0 6 904 hg19 12 83264947.0 12 58018163.0 0 6 UNEVALUABLE UNEVALUABLE
659_QC SLC4A1 SOX9 chr17 44261151 chr17 72124413 BND CALL_659_QC_12 FP call 0.0 0 0 1246 5522 hg19 17 42338519.0 17 70120554.0 0 1246 EVALUABLE BAM_REFUTED
659_QC GDAP1L1 THSD7A chr20 44280286 chr7 11379225 BND CALL_659_QC_13 TP_DUP call 0.997 0 0 0 1052 hg19 20 42908926.0 7 11418852.0 0 0 UNEVALUABLE UNEVALUABLE
659_QC intergenic(GEMIN8,GLRA2) TSPAN31 chrX 14213807 chr12 57747092 BND CALL_659_QC_14 FP call 0.0001 0 0 0 1334 hg19 X 14231929.0 12 58140875.0 0 0 UNEVALUABLE UNEVALUABLE
659_QC intergenic(MAP3K15,SH3KBP1) FRS2 chrX 19522145 chr12 69569078 BND CALL_659_QC_15 TP_DUP call 0.6815 0 0 4 690 hg19 X 19540263.0 12 69962858.0 0 4 UNEVALUABLE UNEVALUABLE
659_QC EIF1AX intergenic(RPS6KA3,CNKSR2) chrX 20125295 chrX 20784001 DEL CALL_659_QC_16 FP call 0.7947 0 0 0 0 hg19 X 20143413.0 X 20802119.0 0 0 UNEVALUABLE UNEVALUABLE
659_QC CNKSR2 MAP3K15 chrX 21632527 chrX 19515101 BND CALL_659_QC_17 FP call 0.0011 0 0 0 323 hg19 X 21650645.0 X 19533219.0 0 0 UNEVALUABLE UNEVALUABLE
659_QC UBA1 intergenic(PAGE3,MAGEH1) chrX 47211176 chrX 55321915 BND CALL_659_QC_18 TP call 0.9966 0 0 660 0 hg19 X 47070575.0 X 55348348.0 0 0 UNEVALUABLE UNEVALUABLE
659_QC PAGE2B PAGE2 chrX 55077563 chrX 55091401 DUP CALL_659_QC_19 FP call 0.0 1 0 454 434 hg19 X 55103996.0 X 55117834.0 1 434 EVALUABLE BAM_AMBIGUOUS
659_QC intergenic(.,.) MUC3A chrUn_JTFH01000054v1_decoy 2688 chr7 100954711 BND CALL_659_QC_20 FP call 0.0 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_QC intergenic(RBAK-RBAKDN,WIPI2) PMS2 chr7 5123594 chr7 6004021 INVERSION TRUTH_659_QC_21 TRUTH truth 204.0 0 0 15 1268 hg19 7 5163225.0 7 6043652.0 0 15 UNEVALUABLE UNEVALUABLE
659_QC THSD7A GDAP1L1 chr7 11379222 chr20 44280285 TRANSLOCATION TRUTH_659_QC_22 TRUTH truth 52.0 0 0 1051 0 hg19 7 11418849.0 20 42908925.0 0 0 UNEVALUABLE UNEVALUABLE
659_QC intergenic(KIF5A,PIP4K2C) MARCHF9 chr12 57587734 chr12 57758121 INVERSION TRUTH_659_QC_23 TRUTH truth 142.0 0 0 2 1269 hg19 12 57981517.0 12 58151904.0 0 2 UNEVALUABLE UNEVALUABLE
659_QC FRS2 intergenic(MAP3K15,SH3KBP1) chr12 69569077 chrX 19522144 TRANSLOCATION TRUTH_659_QC_24 TRUTH truth 272.0 0 0 690 4 hg19 12 69962857.0 X 19540262.0 0 4 UNEVALUABLE UNEVALUABLE
659_QC PPFIA2 OFD1 chr12 81545113 chrX 13751257 TRANSLOCATION TRUTH_659_QC_25 TRUTH truth 109.0 0 0 0 176 hg19 12 81938892.0 X 13769376.0 0 0 UNEVALUABLE UNEVALUABLE
659_QC UBA1 intergenic(PAGE3,MAGEH1) chrX 47211175 chrX 55321914 INVERSION TRUTH_659_QC_26 TRUTH truth 93.0 0 0 660 0 hg19 X 47070574.0 X 55348347.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x MKNK1 PRH1 chr1 46572147 chr12 11075857 BND CALL_659_b4x_0 FP call 0.0001 0 0 572 1 hg19 1 47037819.0 12 11228456.0 0 1 UNEVALUABLE UNEVALUABLE
659_b4x GNG12 DPYD chr1 67782082 chr1 97078616 BND CALL_659_b4x_1 FP call 0.0 0 0 0 743 hg19 1 68247765.0 1 97544172.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x PKN2 intergenic(DPYD,SNX7) chr1 88740990 chr1 98448790 BND CALL_659_b4x_2 FP call 0.009 0 0 544 1 hg19 1 89206673.0 1 98914346.0 0 1 UNEVALUABLE UNEVALUABLE
659_b4x PTBP2 TNR chr1 96785171 chr1 175320625 DEL CALL_659_b4x_3 FP call 0.0029 0 0 520 0 hg19 1 97250727.0 1 175289761.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(DPYD,SNX7) NTRK3 chr1 98069284 chr15 88059041 BND CALL_659_b4x_4 FP call 0.0 0 0 3 0 hg19 1 98534840.0 15 88602272.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x VAV3 VTCN1 chr1 107806714 chr1 117143655 DUP CALL_659_b4x_5 FP call 0.0019 0 0 0 0 hg19 1 108349336.0 1 117686277.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x RGS21 SUDS3 chr1 192366042 chr12 118387474 BND CALL_659_b4x_6 FP call 0.0 0 0 315 5 hg19 1 192335172.0 12 118825279.0 0 5 UNEVALUABLE UNEVALUABLE
659_b4x IPO9 ELF3 chr1 201846087 chr1 202016965 BND CALL_659_b4x_7 FP call 0.0 0 0 12 1 hg19 1 201815215.0 1 201986093.0 0 1 UNEVALUABLE UNEVALUABLE
659_b4x PCNX2 TTC17 chr1 233075657 chr11 43397991 BND CALL_659_b4x_8 FP call 0.0 0 0 9 1106 hg19 1 233211403.0 11 43419541.0 0 9 UNEVALUABLE UNEVALUABLE
659_b4x PPP1CB ALK chr2 28774396 chr2 29224132 DUP CALL_659_b4x_9 FP call 0.0 0 0 5 8426 hg19 2 28997262.0 2 29446998.0 0 5 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(EPCAM,MSH2) MSH2 chr2 47402968 chr2 47447517 DUP CALL_659_b4x_10 FP call 0.0 0 0 2613 11 hg19 2 47630107.0 2 47674656.0 0 11 UNEVALUABLE UNEVALUABLE
659_b4x AFTPH IGF1R chr2 64555599 chr15 98960006 BND CALL_659_b4x_11 FP call 0.0001 0 0 7 3 hg19 2 64782733.0 15 99503235.0 0 3 UNEVALUABLE UNEVALUABLE
659_b4x ZNF638 intergenic(CCDC190,RGS4) chr2 71426953 chr1 162976657 BND CALL_659_b4x_12 FP call 0.0002 0 0 2158 0 hg19 2 71654083.0 1 162946447.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(CTNNA2,SUCLG1) NRG1 chr2 83330576 chr8 32640662 BND CALL_659_b4x_13 FP call 0.0 0 0 2 6 hg19 2 83557700.0 8 32498181.0 0 2 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(RFX8,MAP4K4) NTRK3 chr2 101578548 chr15 87872781 BND CALL_659_b4x_14 FP call 0.0 0 0 2 0 hg19 2 102195010.0 15 88416012.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x ERCC3 TRIM2 chr2 127279118 chr4 153304345 BND CALL_659_b4x_15 FP call 0.0 0 0 1436 6 hg19 2 128036694.0 4 154225497.0 0 6 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(ARHGAP15,GTDC1) RBM45 chr2 143848617 chr2 178121221 DUP CALL_659_b4x_16 FP call 0.0277 0 0 5 260 hg19 2 144606186.0 2 178985948.0 0 5 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(KCNE4,SCG2) SCG2 chr2 223229357 chr2 223598490 DEL CALL_659_b4x_17 FP call 0.0155 0 0 1 3533 hg19 2 224094075.0 2 224463208.0 0 1 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(OR6B3,COPS9) CHEK1 chr2 240062878 chr11 125657083 BND CALL_659_b4x_18 FP call 0.0 0 0 1 0 hg19 2 241002295.0 11 125526978.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x SYN2 PPARG chr3 12049861 chr3 12361728 BND CALL_659_b4x_19 FP call 0.0 0 0 16 0 hg19 3 12091361.0 3 12403227.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(SGO1,ZNF385D) BCL2 chr3 21307983 chr18 63128464 BND CALL_659_b4x_20 FP call 0.0 0 0 5 7374 hg19 3 21349475.0 18 60795697.0 0 5 UNEVALUABLE UNEVALUABLE
659_b4x RBM6 ZBTB48 chr3 49963576 chr1 6580610 BND CALL_659_b4x_21 FP call 0.0439 0 0 3 2524 hg19 3 50001009.0 1 6640670.0 0 3 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(CFAP20DC,FHIT) ATXN7 chr3 59255123 chr3 64000837 DUP CALL_659_b4x_22 FP call 0.0001 0 0 0 1 hg19 3 59240849.0 3 63986513.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x LSAMP NTRK3 chr3 115871583 chr15 88059041 BND CALL_659_b4x_23 FP call 0.0 0 0 2 0 hg19 3 115590430.0 15 88602272.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x PARP9 FAM162A chr3 122556082 chr3 122410765 BND CALL_659_b4x_24 FP call 0.0 0 0 1695 2 hg19 3 122274929.0 3 122129612.0 0 2 UNEVALUABLE UNEVALUABLE
659_b4x CPNE4 RANBP17 chr3 131587517 chr5 170929296 BND CALL_659_b4x_25 FP call 0.0002 0 0 325 1 hg19 3 131306361.0 5 170356300.0 0 1 UNEVALUABLE UNEVALUABLE
659_b4x MAP3K13 intergenic(ETFA,ISL2) chr3 185291839 chr15 76322661 BND CALL_659_b4x_26 FP call 0.0 0 0 928 5 hg19 3 185009627.0 15 76615002.0 0 5 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(USP17L30,DEFB131A) ETV1 chr4 9403258 chr7 13988258 BND CALL_659_b4x_27 FP call 0.0 0 0 1261 5541 hg19 4 9404984.0 7 14027883.0 0 1261 EVALUABLE BAM_REFUTED
659_b4x PDS5A intergenic(CAND1,DYRK2) chr4 39848903 chr12 67620376 BND CALL_659_b4x_28 FP call 0.0328 0 0 236 10 hg19 4 39850523.0 12 68014156.0 0 10 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(KCTD8,YIPF7) PAX3 chr4 44571277 chr2 222201035 BND CALL_659_b4x_29 FP call 0.0 0 0 4 758 hg19 4 44573294.0 2 223065754.0 0 4 UNEVALUABLE UNEVALUABLE
659_b4x EPHA5 intergenic(TECRL,EPHA5) chr4 65320117 chr4 65318549 BND CALL_659_b4x_30 FP call 0.0 0 0 0 0 hg19 4 66185835.0 4 66184267.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x SLC4A4 intergenic(SLC4A4,GC) chr4 71357151 chr4 71727996 BND CALL_659_b4x_31 FP call 0.0003 0 0 626 1 hg19 4 72222868.0 4 72593713.0 0 1 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(NR3C2,IQCM) AHNAK chr4 149134663 chr11 62533833 BND CALL_659_b4x_32 TP call 0.0092 0 0 3 2607 hg19 4 150055815.0 11 62301305.0 0 3 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(RAPGEF2,FSTL5) NTRK2 chr4 161020741 chr9 84905276 BND CALL_659_b4x_33 FP call 0.0 0 0 4 0 hg19 4 161941893.0 9 87520191.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x GALNTL6 intergenic(PLCXD3,OXCT1) chr4 172882820 chr5 41640925 BND CALL_659_b4x_34 FP call 0.0078 0 0 271 0 hg19 4 173803971.0 5 41641027.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(AGA,TENM3) NRG1 chr4 181759760 chr8 32640662 BND CALL_659_b4x_35 FP call 0.0 0 0 15 6 hg19 4 182680913.0 8 32498181.0 0 6 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(TARS1,ADAMTS12) TBC1D31 chr5 33501564 chr8 123093708 BND CALL_659_b4x_36 FP call 0.0 0 0 0 883 hg19 5 33501669.0 8 124105948.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(NDUFS4,ARL15) NRG1 chr5 53783646 chr8 32640662 BND CALL_659_b4x_37 FP call 0.0 0 0 1 6 hg19 5 53079476.0 8 32498181.0 0 1 UNEVALUABLE UNEVALUABLE
659_b4x MAP3K1 intergenic(MAP3K1,SETD9) chr5 56895824 chr5 56896256 DUP CALL_659_b4x_38 FP call 0.0694 0 0 0 0 hg19 5 56191651.0 5 56192083.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x ERAP2 SLC22A24 chr5 96896657 chr11 63104230 BND CALL_659_b4x_39 FP call 0.0001 0 0 739 538 hg19 5 96232361.0 11 62871702.0 0 538 EVALUABLE BAM_REFUTED
659_b4x intergenic(PPP2R2B,STK32A) FAT2 chr5 147151574 chr5 151512343 DEL CALL_659_b4x_40 FP call 0.105 0 0 1 1532 hg19 5 146531137.0 5 150891904.0 0 1 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(NMUR2,GRIA1) STAT6 chr5 152595284 chr12 57111319 BND CALL_659_b4x_41 FP call 0.0001 0 0 2 2 hg19 5 151974845.0 12 57505102.0 0 2 UNEVALUABLE UNEVALUABLE
659_b4x TAP2 BRAF chr6 32823535 chr7 140733620 BND CALL_659_b4x_42 FP call 0.0 0 0 2 722 hg19 6 32791312.0 7 140433420.0 0 2 UNEVALUABLE UNEVALUABLE
659_b4x HMGCLL1 AR chr6 55553162 chrX 67695820 BND CALL_659_b4x_43 FP call 0.0 0 0 22 3662 hg19 6 55417960.0 X 66915662.0 0 22 EVALUABLE BAM_REFUTED
659_b4x FAM135A SMAP1 chr6 70525756 chr6 70677527 DEL CALL_659_b4x_44 FP call 0.0144 0 0 2355 5 hg19 6 71235459.0 6 71387230.0 0 5 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(MAP3K7,EPHA7) PLAA chr6 91893672 chr9 26926435 BND CALL_659_b4x_45 FP call 0.0001 0 0 1 439 hg19 6 92603390.0 9 26926433.0 0 1 UNEVALUABLE UNEVALUABLE
659_b4x PDSS2 NCOR1 chr6 107208956 chr17 16153391 BND CALL_659_b4x_46 FP call 0.0003 0 0 7 239 hg19 6 107530160.0 17 16056705.0 0 7 UNEVALUABLE UNEVALUABLE
659_b4x MAP3K5 intergenic(WNK3,TSR2) chr6 136656337 chrX 54395772 BND CALL_659_b4x_47 FP call 0.0001 0 0 330 6 hg19 6 136977475.0 X 54422205.0 0 6 UNEVALUABLE UNEVALUABLE
659_b4x UTRN NTRK3 chr6 144744321 chr15 88059037 BND CALL_659_b4x_48 FP call 0.0 0 0 2 0 hg19 6 145065457.0 15 88602268.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x PRKN NTRK3 chr6 161733960 chr15 87941480 BND CALL_659_b4x_49 FP call 0.0 0 0 10 15 hg19 6 162154992.0 15 88484711.0 0 10 UNEVALUABLE UNEVALUABLE
659_b4x ETV1 intergenic(ARL4A,ETV1) chr7 13923106 chr7 13834486 BND CALL_659_b4x_50 FP call 0.0 0 0 2 1 hg19 7 13962731.0 7 13874111.0 0 1 UNEVALUABLE UNEVALUABLE
659_b4x SNX13 NRG1 chr7 17810435 chr8 32718218 BND CALL_659_b4x_51 FP call 0.0 0 0 2 0 hg19 7 17850058.0 8 32575736.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x ABCB1 intergenic(ABCB4,ABCB1) chr7 87503025 chr7 87502879 BND CALL_659_b4x_52 FP call 0.0 0 0 0 0 hg19 7 87132341.0 7 87132195.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x MUC17 AMACR chr7 101043596 chr5 33994820 BND CALL_659_b4x_53 FP call 0.0001 0 0 2929 0 hg19 7 100686877.0 5 33994925.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x SRPK2 SERPINE3 chr7 105203710 chr13 51355662 BND CALL_659_b4x_54 FP call 0.0 0 0 1260 64 hg19 7 104844157.0 13 51929798.0 0 64 EVALUABLE BAM_REFUTED
659_b4x UBE3C intergenic(MNX1,UBE3C) chr7 157225410 chr7 157111812 BND CALL_659_b4x_55 FP call 0.0004 0 0 603 0 hg19 7 157018104.0 7 156904506.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x PTPRN2 RHEB chr7 158283580 chr7 151466341 BND CALL_659_b4x_56 FP call 0.0085 0 0 1 5 hg19 7 158076272.0 7 151163427.0 0 1 UNEVALUABLE UNEVALUABLE
659_b4x DOCK5 intergenic(DEFA5,FAM90A15P) chr8 25336261 chr8 7131183 BND CALL_659_b4x_57 FP call 0.0015 0 0 699 13 hg19 8 25193777.0 8 6988705.0 0 13 UNEVALUABLE UNEVALUABLE
659_b4x NRG1 R3HDM1 chr8 32640280 chr2 135654875 BND CALL_659_b4x_58 FP call 0.0 0 0 6 25 hg19 8 32497799.0 2 136412445.0 0 6 UNEVALUABLE UNEVALUABLE
659_b4x NRG1 intergenic(AMY1C,PRMT6) chr8 32640661 chr1 105746275 BND CALL_659_b4x_59 FP call 0.0 0 0 6 5 hg19 8 32498180.0 1 106288897.0 0 5 UNEVALUABLE UNEVALUABLE
659_b4x NRG1 FAM135B chr8 32640661 chr8 138195633 DEL CALL_659_b4x_60 FP call 0.0 0 0 6 375 hg19 8 32498180.0 8 139207876.0 0 6 UNEVALUABLE UNEVALUABLE
659_b4x NRG1 intergenic(NCAM2,MRPL39) chr8 32640662 chr21 23198725 BND CALL_659_b4x_61 FP call 0.0 0 0 6 0 hg19 8 32498181.0 21 24571047.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x NRG1 intergenic(ADAMTS1,ADAMTS5) chr8 32640662 chr21 26876629 BND CALL_659_b4x_62 FP call 0.0 0 0 6 0 hg19 8 32498181.0 21 28248948.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x NRG1 intergenic(ZXDA,SPIN4) chr8 32728243 chrX 63096985 BND CALL_659_b4x_63 FP call 0.002 0 0 1504 0 hg19 8 32585761.0 X 62316455.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x PCMTD1 intergenic(PXDNL,PCMTD1) chr8 51820355 chr8 51817484 BND CALL_659_b4x_64 FP call 0.0004 0 0 2970 0 hg19 8 52732915.0 8 52730044.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x NSMAF intergenic(TOX,CA8) chr8 58587658 chr8 59693707 DEL CALL_659_b4x_65 FP call 0.0007 0 0 387 0 hg19 8 59500217.0 8 60606266.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x ELOC intergenic(KCNB2,TERF1) chr8 73945473 chr8 73001016 BND CALL_659_b4x_66 FP call 0.0 0 0 2 15 hg19 8 74857708.0 8 73913251.0 0 2 UNEVALUABLE UNEVALUABLE
659_b4x RSPO2 ETV1 chr8 107991250 chr7 13988257 BND CALL_659_b4x_67 FP call 0.0 0 0 17 5534 hg19 8 109003478.0 7 14027882.0 0 17 UNEVALUABLE UNEVALUABLE
659_b4x EXT1 ABL2 chr8 117859517 chr1 179105366 BND CALL_659_b4x_68 FP call 0.0 0 0 4 0 hg19 8 118871756.0 1 179074501.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x TAF2 ETV1 chr8 119818733 chr7 13988258 BND CALL_659_b4x_69 FP call 0.0 0 0 37 5541 hg19 8 120830973.0 7 14027883.0 0 37 EVALUABLE BAM_REFUTED
659_b4x PTPRD SMARCA2 chr9 9859893 chr9 1991332 BND CALL_659_b4x_70 FP call 0.0005 0 0 3 1 hg19 9 9859893.0 9 1991332.0 0 1 UNEVALUABLE UNEVALUABLE
659_b4x MTAP CDKN2B chr9 21822792 chr9 22008479 BND CALL_659_b4x_71 FP call 0.0 0 0 4 3380 hg19 9 21822791.0 9 22008478.0 0 4 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(NTRK2,AGTPBP1) NTRK2 chr9 85223783 chr9 84903852 BND CALL_659_b4x_72 FP call 0.0001 0 0 7 1 hg19 9 87838698.0 9 87518767.0 0 1 UNEVALUABLE UNEVALUABLE
659_b4x HSDL2 intergenic(SLC46A2,ZNF883) chr9 112418919 chr9 112976183 DUP CALL_659_b4x_73 FP call 0.0004 0 0 240 0 hg19 9 115181199.0 9 115738463.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(BRINP1,CDK5RAP2) SIN3A chr9 119670087 chr15 75371211 BND CALL_659_b4x_74 FP call 0.0 0 0 2 1 hg19 9 122432365.0 15 75663552.0 0 1 UNEVALUABLE UNEVALUABLE
659_b4x TTLL11 NUP93 chr9 122064406 chr16 56849419 BND CALL_659_b4x_75 FP call 0.0 0 0 1 3 hg19 9 124826685.0 16 56883331.0 0 1 UNEVALUABLE UNEVALUABLE
659_b4x FAS intergenic(FAS,CH25H) chr10 89022326 chr10 89066698 DEL CALL_659_b4x_76 FP call 0.0 0 0 10 1 hg19 10 90782083.0 10 90826455.0 0 1 UNEVALUABLE UNEVALUABLE
659_b4x FGFR2 SGK2 chr10 121595421 chr20 43571101 BND CALL_659_b4x_77 FP call 0.0001 0 0 10055 1025 hg19 10 123354935.0 20 42199741.0 0 1025 EVALUABLE BAM_REFUTED
659_b4x FGFR2 intergenic(FGFR2,ATE1) chr10 121596840 chr10 121602282 DEL CALL_659_b4x_78 FP call 0.0 0 0 10993 32 hg19 10 123356354.0 10 123361796.0 0 32 EVALUABLE BAM_REFUTED
659_b4x OR2D2 intergenic(ZIC1,AGTR1) chr11 6892189 chr3 148313176 BND CALL_659_b4x_79 FP call 0.0003 0 0 2081 2 hg19 11 6913420.0 3 148030963.0 0 2 UNEVALUABLE UNEVALUABLE
659_b4x OR8K1 intergenic(HS3ST1,RAB28) chr11 56346362 chr4 12933006 BND CALL_659_b4x_80 FP call 0.0001 0 0 1483 0 hg19 11 56113838.0 4 12934630.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x FAT3 intergenic(LUZP2,ANO3) chr11 92354033 chr11 25258195 BND CALL_659_b4x_81 FP call 0.0001 0 0 2855 1 hg19 11 92087199.0 11 25279741.0 0 1 UNEVALUABLE UNEVALUABLE
659_b4x KMT2A ENSG00000285827 chr11 118525762 chr11 118416349 BND CALL_659_b4x_82 FP call 0.0 0 0 1 0 hg19 11 118396477.0 11 118287064.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x NCAPD3 VPS26B chr11 134210357 chr11 134232145 DEL CALL_659_b4x_83 FP call 0.0162 0 0 595 11 hg19 11 134080251.0 11 134102039.0 0 11 UNEVALUABLE UNEVALUABLE
659_b4x ACSM4 intergenic(PEX5,ACSM4) chr12 7327039 chr12 7284971 BND CALL_659_b4x_84 FP call 0.0253 0 0 600 0 hg19 12 7479635.0 12 7437567.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x SLC2A14 CNTN1 chr12 7889125 chr12 40937625 DEL CALL_659_b4x_85 FP call 0.0038 0 0 8 330 hg19 12 8041721.0 12 41331427.0 0 8 UNEVALUABLE UNEVALUABLE
659_b4x PIK3C2G BRIP1 chr12 18361119 chr17 61680338 BND CALL_659_b4x_86 FP call 0.0006 0 0 1 29 hg19 12 18514053.0 17 59757699.0 0 1 UNEVALUABLE UNEVALUABLE
659_b4x CFAP54 intergenic(TMCC3,NDUFA12) chr12 96527425 chr12 94798732 BND CALL_659_b4x_87 FP call 0.002 0 0 620 0 hg19 12 96921203.0 12 95192508.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(LMO7,KCTD12) NF1 chr13 76734550 chr17 31376195 BND CALL_659_b4x_88 FP call 0.0 0 0 5 4 hg19 13 77308685.0 17 29703213.0 0 4 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(SLC10A2,DAOA) SLC45A3 chr13 105009110 chr1 205679725 BND CALL_659_b4x_89 FP call 0.0 0 0 0 8 hg19 13 105661461.0 1 205648853.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(EXD2,GALNT16) NRG1 chr14 69252069 chr8 32640662 BND CALL_659_b4x_90 FP call 0.0 0 0 1 6 hg19 14 69718786.0 8 32498181.0 0 1 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(ESRRB,VASH1) KLF3 chr14 76524389 chr4 38672790 BND CALL_659_b4x_91 FP call 0.0007 0 0 6 5 hg19 14 76990732.0 4 38674411.0 0 5 UNEVALUABLE UNEVALUABLE
659_b4x AHNAK2 intergenic(CHL1,CNTN6) chr14 104955134 chr3 696364 BND CALL_659_b4x_92 FP call 0.0002 0 0 2885 0 hg19 14 105421471.0 3 738048.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(PLA2G4E,PLA2G4D) STAT6 chr15 42066465 chr12 57111319 BND CALL_659_b4x_93 FP call 0.0002 0 0 0 2 hg19 15 42358663.0 12 57505102.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(TSPAN3,PEAK1) NTRK3 chr15 77099922 chr15 88061084 DEL CALL_659_b4x_94 FP call 0.0 0 0 2 0 hg19 15 77392264.0 15 88604315.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x TMED3 NRG1 chr15 79387595 chr8 32640662 BND CALL_659_b4x_95 FP call 0.0 0 0 2 6 hg19 15 79679937.0 8 32498181.0 0 2 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(ASB7,ALDH1A3) ENSG00000288710 chr15 100800567 chr12 49019325 BND CALL_659_b4x_96 FP call 0.0 0 0 0 1440 hg19 15 101340772.0 12 49413108.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x TNRC6A NTRK3 chr16 24674738 chr15 88059050 BND CALL_659_b4x_97 FP call 0.0 0 0 10 0 hg19 16 24686059.0 15 88602281.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x KIF22 intergenic(MAP2K4,MYOCD) chr16 29798433 chr17 12614020 BND CALL_659_b4x_98 FP call 0.0005 0 0 1888 0 hg19 16 29809754.0 17 12517337.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(MAF,DYNLRB2) MYC chr16 80016926 chr8 127741753 BND CALL_659_b4x_99 FP call 0.0 0 0 0 8 hg19 16 80050823.0 8 128753999.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x ZC3H18 NTRK3 chr16 88587380 chr15 87985113 BND CALL_659_b4x_100 FP call 0.0 0 0 427 0 hg19 16 88653788.0 15 88528344.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x ETV4 PIK3C2A chr17 43537001 chr11 17202345 BND CALL_659_b4x_101 FP call 0.0 0 0 276 9 hg19 17 41614369.0 11 17223892.0 0 9 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(KCNJ2,SOX9) SOX9 chr17 71677902 chr17 72124599 DEL CALL_659_b4x_102 FP call 0.0001 0 0 2 4082 hg19 17 69674043.0 17 70120740.0 0 2 UNEVALUABLE UNEVALUABLE
659_b4x NUP85 intergenic(SFXN1,HRH2) chr17 75218297 chr5 175558895 BND CALL_659_b4x_103 FP call 0.0 0 0 748 10 hg19 17 73214392.0 5 174985898.0 0 10 UNEVALUABLE UNEVALUABLE
659_b4x MIB1 GATA6 chr18 21768094 chr18 22202366 DUP CALL_659_b4x_104 FP call 0.0 0 0 93 1 hg19 18 19348055.0 18 19782329.0 0 1 UNEVALUABLE UNEVALUABLE
659_b4x FHOD3 NRG1 chr18 36474987 chr8 32640661 BND CALL_659_b4x_105 FP call 0.0 0 0 10 6 hg19 18 34054950.0 8 32498180.0 0 6 UNEVALUABLE UNEVALUABLE
659_b4x PIK3C3 intergenic(NKX2-5,STC2) chr18 41990532 chr5 173274907 BND CALL_659_b4x_106 FP call 0.0 0 0 190 0 hg19 18 39570496.0 5 172701910.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x BCL2 SLC35D1 chr18 63128464 chr1 67021725 BND CALL_659_b4x_107 FP call 0.0 0 0 7374 478 hg19 18 60795697.0 1 67487408.0 0 478 EVALUABLE BAM_REFUTED
659_b4x MADCAM1 intergenic(NYAP2,IRS1) chr19 498585 chr2 226197890 BND CALL_659_b4x_108 FP call 0.0033 0 0 1976 1 hg19 19 498585.0 2 227062606.0 0 1 UNEVALUABLE UNEVALUABLE
659_b4x NOTCH3 intergenic(MEIS1,ETAA1) chr19 15187473 chr2 66574444 BND CALL_659_b4x_109 FP call 0.0001 0 0 3761 1 hg19 19 15298284.0 2 66801576.0 0 1 UNEVALUABLE UNEVALUABLE
659_b4x DNAAF9 SPTA1 chr20 3344591 chr1 158611156 BND CALL_659_b4x_110 FP call 0.0 0 0 3 1889 hg19 20 3325238.0 1 158580946.0 0 3 UNEVALUABLE UNEVALUABLE
659_b4x TOP1 intergenic(TOP1,PLCG1) chr20 41124398 chr20 41127353 BND CALL_659_b4x_111 FP call 0.0 0 0 1 15 hg19 20 39753038.0 20 39755993.0 0 1 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(ADAMTS5,N6AMT1) TMPRSS2 chr21 28493916 chr21 41492416 DUP CALL_659_b4x_112 FP call 0.0005 0 0 1 6234 hg19 21 29866237.0 21 42864343.0 0 1 UNEVALUABLE UNEVALUABLE
659_b4x KRTAP25-1 ADAMTSL3 chr21 30289272 chr15 83802530 BND CALL_659_b4x_113 FP call 0.0046 0 0 690 0 hg19 21 31661590.0 15 84471282.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x SCAF4 KCNN2 chr21 31690845 chr5 114346886 BND CALL_659_b4x_114 FP call 0.0172 0 0 453 0 hg19 21 33063158.0 5 113682583.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x SLC5A3 PIM1 chr21 34074208 chr6 37170409 BND CALL_659_b4x_115 FP call 0.0 0 0 160 6130 hg19 21 35446508.0 6 37138185.0 0 160 EVALUABLE BAM_REFUTED
659_b4x DSCAM TMPRSS2 chr21 40184774 chr21 41501196 BND CALL_659_b4x_116 FP call 0.0 0 0 0 7339 hg19 21 41556701.0 21 42873123.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x YBEY ENSG00000282278 chr21 46286951 chr4 54171120 BND CALL_659_b4x_117 FP call 0.0045 0 0 904 2 hg19 21 47706865.0 4 55037287.0 0 2 UNEVALUABLE UNEVALUABLE
659_b4x TTC28 ETV1 chr22 28066323 chr7 13988258 BND CALL_659_b4x_118 FP call 0.0 0 0 6 5541 hg19 22 28462311.0 7 14027883.0 0 6 UNEVALUABLE UNEVALUABLE
659_b4x EWSR1 BICDL1 chr22 29282712 chr12 120032719 BND CALL_659_b4x_119 FP call 0.0002 0 0 734 20 hg19 22 29678701.0 12 120470523.0 0 20 EVALUABLE BAM_REFUTED
659_b4x intergenic(MED14,USP9X) NTRK2 chrX 40931089 chr9 84905277 BND CALL_659_b4x_120 FP call 0.0 0 0 12 0 hg19 X 40790342.0 9 87520192.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(CASK,PPP1R2C) NTRK3 chrX 42244048 chr15 88059042 BND CALL_659_b4x_121 FP call 0.0001 0 0 5 0 hg19 X 42103301.0 15 88602273.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(SSX4B,SLC38A5) BCL2 chrX 48456621 chr18 63128464 BND CALL_659_b4x_122 FP call 0.0002 0 0 2 7374 hg19 X 48315004.0 18 60795697.0 0 2 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(EDA2R,AR) ETV1 chrX 67118383 chr7 13932070 BND CALL_659_b4x_123 FP call 0.0001 0 0 0 2139 hg19 X 66338225.0 7 13971695.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x AR intergenic(BUB3,GPR26) chrX 67701721 chr10 123429218 BND CALL_659_b4x_124 FP call 0.0 0 0 1 2 hg19 X 66921563.0 10 125188734.0 0 1 UNEVALUABLE UNEVALUABLE
659_b4x AR CYLC1 chrX 67708626 chrX 83864848 DEL CALL_659_b4x_125 FP call 0.0064 0 0 0 2 hg19 X 66928468.0 X 83119856.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x RPS6KA6 HDX chrX 84117132 chrX 84430437 BND CALL_659_b4x_126 FP call 0.0074 0 0 196 0 hg19 X 83372140.0 X 83685445.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4x intergenic(NR3C2,IQCM) AHNAK chr4 149134662 chr11 62533832 TRANSLOCATION TRUTH_659_b4x_127 TRUTH truth 138.0 0 0 3 2607 hg19 4 150055814.0 11 62301304.0 0 3 UNEVALUABLE UNEVALUABLE
659_b7Z PREB BABAM2 chr2 27132874 chr2 27958807 DUP CALL_659_b7Z_0 FP call 0.6185 0 0 2636 3 hg19 2 27355742.0 2 28181674.0 0 3 UNEVALUABLE UNEVALUABLE
659_b7Z intergenic(CLIP2,GTF2IRD1) SIN3A chr7 74448050 chr15 75411575 BND CALL_659_b7Z_1 FP call 0.0 0 0 11 1051 hg19 7 73862380.0 15 75703916.0 0 11 UNEVALUABLE UNEVALUABLE
659_b7Z intergenic(PEX2,PKIA) HLA-B chr8 77757858 chr6 31355250 BND CALL_659_b7Z_2 FP call 0.0005 0 0 2 6723 hg19 8 78670093.0 6 31323027.0 0 2 UNEVALUABLE UNEVALUABLE
659_b7Z RB1 FGF14 chr13 48557318 chr13 101716913 DUP CALL_659_b7Z_3 FP call 0.0 0 0 1 0 hg19 13 49131454.0 13 102369263.0 0 0 UNEVALUABLE UNEVALUABLE
659_bNS intergenic(SLC8A1,PKDCC) ALK chr2 41654569 chr2 29921014 BND CALL_659_bNS_0 FP call 0.016 0 0 3 1823 hg19 2 41881709.0 2 30143880.0 0 3 UNEVALUABLE UNEVALUABLE
659_bNS EML4 ALK chr2 42264830 chr2 29224622 BND CALL_659_bNS_1 TP_DUP call 0.9974 0 0 450 9313 hg19 2 42491970.0 2 29447488.0 0 450 EVALUABLE BAM_REFUTED
659_bNS GZMH GZMB chr14 24607747 chr14 24632379 DEL CALL_659_bNS_2 FP call 0.0019 10 0 2205 1631 hg19 14 25076953.0 14 25101585.0 10 1631 EVALUABLE BAM_CONFIRMED
659_bNS ALK EML4 chr2 29224621 chr2 42264829 INVERSION TRUTH_659_bNS_3 TRUTH truth 134.0 0 0 9308 450 hg19 2 29447487.0 2 42491969.0 0 450 EVALUABLE BAM_REFUTED
659_bPW LPGAT1 LEFTY2 chr1 211811294 chr1 225937592 BND CALL_659_bPW_0 TP call 0.0297 0 0 0 2507 hg19 1.0 211984636.0 1.0 226125292.0 0 0 UNEVALUABLE UNEVALUABLE
659_bPW LEFTY2 intergenic(SCCPDH,AHCTF1) chr1 225937564 chr1 246811217 DEL CALL_659_bPW_1 TP call 0.0029 0 0 2507 14 hg19 1.0 226125264.0 1.0 246974519.0 0 14 UNEVALUABLE UNEVALUABLE
659_bPW AHCTF1 LPGAT1 chr1 246913254 chr1 211812432 BND CALL_659_bPW_2 FP call 0.0254 0 0 709 0 hg19 1.0 247076556.0 1.0 211985774.0 0 0 UNEVALUABLE UNEVALUABLE
659_bPW DYSF HLA-DRB1 chr2 71603488 chr6 32579021 BND CALL_659_bPW_3 FP call 0.0 0 0 30 2609 hg19 2.0 71830618.0 6.0 32546798.0 0 30 EVALUABLE BAM_REFUTED
659_bPW MACROH2A2 HLA-DRB1 chr10 70083442 chr6 32581572 BND CALL_659_bPW_4 FP call 0.0 0 0 0 1411 hg19 10.0 71843198.0 6.0 32549349.0 0 0 UNEVALUABLE UNEVALUABLE
659_bPW HDAC7 intergenic(MED13L,MAP1LC3B2) chr12 47798889 chr12 116529974 DEL CALL_659_bPW_5 TP call 0.9948 0 0 977 13 hg19 12.0 48192672.0 12.0 116967779.0 0 13 UNEVALUABLE UNEVALUABLE
659_bPW intergenic(LALBA,KANSL2) SETD1B chr12 48623297 chr12 121804738 DEL CALL_659_bPW_6 FP call 0.9983 0 0 6 1565 hg19 12.0 49017080.0 12.0 122242644.0 0 6 UNEVALUABLE UNEVALUABLE
659_bPW DNAJC14 ATF1 chr12 55828007 chr12 50781178 BND CALL_659_bPW_7 TP_DUP call 0.9987 0 0 4055 7 hg19 12.0 56221791.0 12.0 51174961.0 0 7 UNEVALUABLE UNEVALUABLE
659_bPW MARCHF9 intergenic(RILPL2,SNRNP35) chr12 57757139 chr12 123444738 DEL CALL_659_bPW_8 FP call 0.9914 0 0 970 7 hg19 12.0 58150922.0 12.0 123929285.0 0 7 UNEVALUABLE UNEVALUABLE
659_bPW LGR5 RAPGEF3 chr12 71583952 chr12 47770770 BND CALL_659_bPW_9 FP call 0.3551 0 0 2379 2 hg19 12.0 71977732.0 12.0 48164553.0 0 2 UNEVALUABLE UNEVALUABLE
659_bPW intergenic(TMTC3,KITLG) ENSG00000257390 chr12 88279272 chr12 55794387 BND CALL_659_bPW_10 FP call 0.9941 0 0 0 429 hg19 12.0 88673049.0 12.0 56188171.0 0 0 UNEVALUABLE UNEVALUABLE
659_bPW PRDM4 PGC chr12 107750887 chr6 41736972 BND CALL_659_bPW_11 TP_DUP call 0.9979 0 0 191 677 hg19 12.0 108144664.0 6.0 41704710.0 0 191 EVALUABLE BAM_REFUTED
659_bPW PHETA1 NAA25 chr12 111362719 chr12 112089856 DUP CALL_659_bPW_12 TP call 0.9987 0 0 2815 6 hg19 12.0 111800523.0 12.0 112527660.0 0 6 UNEVALUABLE UNEVALUABLE
659_bPW LHX5 RILPL2 chr12 113470710 chr12 123436335 BND CALL_659_bPW_13 TP call 0.5881 0 0 46 1818 hg19 12.0 113908515.0 12.0 123920882.0 0 46 EVALUABLE BAM_REFUTED
659_bPW RNFT2 RNF34 chr12 116787882 chr12 121423433 DEL CALL_659_bPW_14 TP call 0.9805 0 0 8 1643 hg19 12.0 117225687.0 12.0 121861236.0 0 8 UNEVALUABLE UNEVALUABLE
659_bPW intergenic(PIRT,SHISA6) GOSR1 chr17 11028127 chr17 30522350 DUP CALL_659_bPW_15 FP call 0.01 0 0 0 474 hg19 17.0 10931444.0 17.0 28849368.0 0 0 UNEVALUABLE UNEVALUABLE
659_bPW MAP2K4 P2RX1 chr17 12143699 chr17 3899544 BND CALL_659_bPW_16 FP call 0.9734 0 0 0 751 hg19 17.0 12047016.0 17.0 3802838.0 0 0 UNEVALUABLE UNEVALUABLE
659_bPW NCOR1 intergenic(HS3ST3A1,COX10) chr17 16101467 chr17 13681805 BND CALL_659_bPW_17 FP call 0.0001 0 0 1851 0 hg19 17.0 16004781.0 17.0 13585122.0 0 0 UNEVALUABLE UNEVALUABLE
659_bPW NCOR1 AATF chr17 16101737 chr17 36999951 BND CALL_659_bPW_18 FP call 0.003 0 0 1790 0 hg19 17.0 16005051.0 17.0 35357250.0 0 0 UNEVALUABLE UNEVALUABLE
659_bPW MYO18A BRCA1 chr17 29118142 chr17 43058955 DUP CALL_659_bPW_19 FP call 0.0025 0 0 1187 5371 hg19 17.0 27445160.0 17.0 41210972.0 0 1187 EVALUABLE BAM_REFUTED
659_bPW intergenic(TMEM98,SPACA3) BRCA1 chr17 32955327 chr17 43119788 BND CALL_659_bPW_20 FP call 0.0004 0 0 0 6356 hg19 17.0 31282345.0 17.0 41271805.0 0 0 UNEVALUABLE UNEVALUABLE
659_bPW intergenic(CDK12,NEUROD2) NCOR1 chr17 39583590 chr17 16108803 BND CALL_659_bPW_21 FP call 0.0005 0 0 4 448 hg19 17.0 37739843.0 17.0 16012117.0 0 4 UNEVALUABLE UNEVALUABLE
659_bPW BRCA1 ABCA5 chr17 43119477 chr17 69246007 DEL CALL_659_bPW_22 FP call 0.009 0 0 6599 1 hg19 17.0 41271494.0 17.0 67242148.0 0 1 UNEVALUABLE UNEVALUABLE
659_bPW TOM1L1 intergenic(TMEM132E,CCT6B) chr17 54905491 chr17 34901131 BND CALL_659_bPW_23 FP call 0.0144 0 0 180 2 hg19 17.0 52982852.0 17.0 33228150.0 0 2 UNEVALUABLE UNEVALUABLE
659_bPW TRIM37 APPBP2 chr17 59008121 chr17 60460673 BND CALL_659_bPW_24 FP call 0.0217 0 0 0 603 hg19 17.0 57085482.0 17.0 58538034.0 0 0 UNEVALUABLE UNEVALUABLE
659_bPW BRIP1 INTS2 chr17 61710893 chr17 61872318 DEL CALL_659_bPW_25 FP call 0.0042 0 0 0 482 hg19 17.0 59788254.0 17.0 59949679.0 0 0 UNEVALUABLE UNEVALUABLE
659_bPW UBE2O intergenic(KCNJ2,SOX9) chr17 76400267 chr17 71688452 BND CALL_659_bPW_26 FP call 0.0005 0 0 1640 14 hg19 17.0 74396348.0 17.0 69684593.0 0 14 UNEVALUABLE UNEVALUABLE
659_bPW MYO9B ODF3L2 chr19 17167390 chr19 464247 BND CALL_659_bPW_27 FP call 0.0001 0 0 213 1452 hg19 19.0 17278200.0 19.0 464247.0 0 213 EVALUABLE BAM_REFUTED
659_bPW intergenic(.,.) MUC3A chrUn_JTFH01000054v1_decoy 3908 chr7 100955814 BND CALL_659_bPW_28 FP call 0.0 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_bPW LPGAT1 LEFTY2 chr1 211811208 chr1 225937531 INVERSION TRUTH_659_bPW_29 TRUTH truth 99.0 0 0 0 2507 hg19 1.0 211984550.0 1.0 226125231.0 0 0 UNEVALUABLE UNEVALUABLE
659_bPW LEFTY2 intergenic(SCCPDH,AHCTF1) chr1 225937563 chr1 246811216 DELETION TRUTH_659_bPW_30 TRUTH truth 27.0 0 0 2507 14 hg19 1.0 226125263.0 1.0 246974518.0 0 14 UNEVALUABLE UNEVALUABLE
659_bPW PGC PRDM4 chr6 41736970 chr12 107750886 TRANSLOCATION TRUTH_659_bPW_31 TRUTH truth 186.0 0 0 677 188 hg19 6.0 41704708.0 12.0 108144663.0 0 188 EVALUABLE BAM_REFUTED
659_bPW intergenic(PRIM2,KHDRBS2) NOS1 chr6 58450697 chr12 117222846 TRANSLOCATION TRUTH_659_bPW_32 TRUTH truth 137.0 0 0 321 695 hg19 6.0 58776975.0 12.0 117660651.0 0 321 EVALUABLE BAM_REFUTED
659_bPW HDAC7 intergenic(MED13L,MAP1LC3B2) chr12 47798888 chr12 116529973 DELETION TRUTH_659_bPW_33 TRUTH truth 341.0 0 0 977 13 hg19 12.0 48192671.0 12.0 116967778.0 0 13 UNEVALUABLE UNEVALUABLE
659_bPW ATF1 DNAJC14 chr12 50781177 chr12 55828006 INVERSION TRUTH_659_bPW_34 TRUTH truth 443.0 0 0 7 4058 hg19 12.0 51174960.0 12.0 56221790.0 0 7 UNEVALUABLE UNEVALUABLE
659_bPW PHETA1 NAA25 chr12 111362718 chr12 112089855 DUPLICATION TRUTH_659_bPW_35 TRUTH truth 384.0 0 0 2811 6 hg19 12.0 111800522.0 12.0 112527659.0 0 6 UNEVALUABLE UNEVALUABLE
659_bPW LHX5 RILPL2 chr12 113470709 chr12 123436334 INVERSION TRUTH_659_bPW_36 TRUTH truth 272.0 0 0 45 1818 hg19 12.0 113908514.0 12.0 123920881.0 0 45 EVALUABLE BAM_REFUTED
659_bPW RNFT2 RNF34 chr12 116787881 chr12 121423432 DELETION TRUTH_659_bPW_37 TRUTH truth 1248.0 0 0 8 1643 hg19 12.0 117225686.0 12.0 121861235.0 0 8 UNEVALUABLE UNEVALUABLE
659_bPW EFTUD2 SPAG9 chr17 44863701 chr17 51048082 DELETION TRUTH_659_bPW_38 TRUTH truth 248.0 0 0 873 9 hg19 17.0 42941069.0 17.0 49125443.0 0 9 UNEVALUABLE UNEVALUABLE
659_bST UBE2E3 CERKL chr2 180968369 chr2 181536609 DUP CALL_659_bST_0 FP call 0.0 0 0 0 0 hg19 2 181833096.0 2 182401336.0 0 0 UNEVALUABLE UNEVALUABLE
659_bST SMARCAL1 TNS1 chr2 216475184 chr2 217818143 BND CALL_659_bST_1 TP call 0.997 0 0 739 3963 hg19 2 217339907.0 2 218682866.0 0 739 EVALUABLE BAM_REFUTED
659_bST JAM3 NRIP1 chr11 134143519 chr21 14967678 BND CALL_659_bST_2 FP call 0.0 0 0 10 2416 hg19 11 134013414.0 21 16339999.0 0 10 UNEVALUABLE UNEVALUABLE
659_bST CES1 intergenic(SLC6A2,CES1) chr16 55833048 chr16 55760831 BND CALL_659_bST_3 FP call 0.0 0 0 162 18 hg19 16 55866960.0 16 55794743.0 0 18 UNEVALUABLE UNEVALUABLE
659_bST intergenic(CEP192,LDLRAD4) WDR89 chr18 13152492 chr14 63599475 BND CALL_659_bST_4 FP call 0.0004 6 0 399 3050 hg19 18 13152491.0 14 64066193.0 6 399 EVALUABLE BAM_CONFIRMED
659_bST intergenic(NCAM2,MRPL39) URB1 chr21 21839814 chr21 32368588 DEL CALL_659_bST_5 FP call 0.4004 0 0 0 650 hg19 21 23212134.0 21 33740897.0 0 0 UNEVALUABLE UNEVALUABLE
659_bST SMARCAL1 TNS1 chr2 216475182 chr2 217818141 INVERSION TRUTH_659_bST_6 TRUTH truth 113.0 0 0 739 3956 hg19 2 217339905.0 2 218682864.0 0 739 EVALUABLE BAM_REFUTED
659_bV5 FGFR3 C4orf50 chr4 1807080 chr4 6096810 BND CALL_659_bV5_0 TP call 0.9073 0 0 16165 0 hg19 4 1808807.0 4 6098537.0 0 0 UNEVALUABLE UNEVALUABLE
659_bV5 SUPT3H ENSG00000286001 chr6 45053104 chr5 256870 BND CALL_659_bV5_1 FP call 0.0 0 0 1 848 hg19 6 45020841.0 5 256985.0 0 1 UNEVALUABLE UNEVALUABLE
659_bV5 MACC1 ASZ1 chr7 20159038 chr7 117400085 DUP CALL_659_bV5_2 TP call 0.986 0 0 3057 0 hg19 7 20198661.0 7 117040139.0 0 0 UNEVALUABLE UNEVALUABLE
659_bV5 intergenic(NPVF,NFE2L3) MACC1 chr7 25253281 chr7 20158245 BND CALL_659_bV5_3 TP_DUP call 0.9833 0 0 1 1762 hg19 7 25292900.0 7 20197868.0 0 1 UNEVALUABLE UNEVALUABLE
659_bV5 intergenic(KIF26A,TMEM179) AR chr14 104300926 chrX 67546377 BND CALL_659_bV5_4 FP call 0.0044 0 0 10 4600 hg19 14 104767263.0 X 66766219.0 0 10 UNEVALUABLE UNEVALUABLE
659_bV5 AR OPHN1 chrX 67689286 chrX 68154963 BND CALL_659_bV5_5 FP call 0.0 0 0 824 2 hg19 X 66909128.0 X 67374805.0 0 2 UNEVALUABLE UNEVALUABLE
659_bV5 UPRT ATRX chrX 75156983 chrX 77507067 DEL CALL_659_bV5_6 FP call 0.0 0 0 7 1 hg19 X 74376818.0 X 76762545.0 0 1 UNEVALUABLE UNEVALUABLE
659_bV5 MACC1 intergenic(NPVF,NFE2L3) chr7 20158240 chr7 25253284 INVERSION TRUTH_659_bV5_7 TRUTH truth 92.0 0 0 1737 1 hg19 7 20197863.0 7 25292903.0 0 1 UNEVALUABLE UNEVALUABLE
659_bV5 MACC1 ASZ1 chr7 20159037 chr7 117400084 DUPLICATION TRUTH_659_bV5_8 TRUTH truth 30.0 0 0 3056 0 hg19 7 20198660.0 7 117040138.0 0 0 UNEVALUABLE UNEVALUABLE
659_bV5 FGFR3 JAKMIP1 chr4 1807079 chr4 6096809 INVERSION TRUTH_659_bV5_9 TRUTH truth 365.0 0 0 16166 0 hg19 4 1808806.0 4 6098536.0 0 0 UNEVALUABLE UNEVALUABLE
659_bZH DNAH5 TRIO chr5 13839444 chr5 14483823 DUP CALL_659_bZH_0 TP call 0.9994 0 0 479 0 hg19 5 13839553.0 5 14483932.0 0 0 UNEVALUABLE UNEVALUABLE
659_bZH SDK1 ETV1 chr7 3501619 chr7 13951970 DUP CALL_659_bZH_1 TP call 0.9349 0 0 0 5849 hg19 7 3541251.0 7 13991595.0 0 0 UNEVALUABLE UNEVALUABLE
659_bZH ELMO1 NSUN2 chr7 36980208 chr5 6607333 BND CALL_659_bZH_2 TP_DUP call 0.9924 0 0 2 655 hg19 7 37019813.0 5 6607446.0 0 2 UNEVALUABLE UNEVALUABLE
659_bZH IGHMBP2 BCR chr11 68906895 chr22 23290765 BND CALL_659_bZH_3 FP call 0.0216 0 0 43 7391 hg19 11 68674363.0 22 23632952.0 0 43 EVALUABLE BAM_REFUTED
659_bZH KBTBD13 SUGCT chr15 65078079 chr7 40623330 BND CALL_659_bZH_4 TP_DUP call 0.9968 0 0 2502 0 hg19 15 65370417.0 7 40662929.0 0 0 UNEVALUABLE UNEVALUABLE
659_bZH intergenic(CTXND1,ARNT2) MESD chr15 80259850 chr15 80979276 DEL CALL_659_bZH_5 TP call 0.9751 0 0 0 1286 hg19 15 80552192.0 15 81271617.0 0 0 UNEVALUABLE UNEVALUABLE
659_bZH RNF157 intergenic(RPS6KA1,ARID1A) chr17 76165518 chr1 26582793 BND CALL_659_bZH_6 TP_DUP call 0.8857 0 0 358 0 hg19 17 74161599.0 1 26909284.0 0 0 UNEVALUABLE UNEVALUABLE
659_bZH RSPH14 SPECC1L chr22 23129491 chr22 24322435 BND CALL_659_bZH_7 FP call 0.0003 0 0 12 2890 hg19 22 23471678.0 22 24718403.0 0 12 UNEVALUABLE UNEVALUABLE
659_bZH TTC28 TNRC6B chr22 28131360 chr22 40273428 BND CALL_659_bZH_8 FP call 0.9284 0 0 0 704 hg19 22 28527348.0 22 40669432.0 0 0 UNEVALUABLE UNEVALUABLE
659_bZH intergenic(EWSR1,GAS2L1) UNC93B1 chr22 29305408 chr11 67995735 BND CALL_659_bZH_9 TP_DUP call 0.9791 0 0 16 1288 hg19 22 29701398.0 11 67763206.0 0 16 UNEVALUABLE UNEVALUABLE
659_bZH EP300 intergenic(LRRC28,MEF2A) chr22 41178436 chr15 99518417 BND CALL_659_bZH_10 TP_DUP call 0.9892 0 0 9265 6 hg19 22 41574440.0 15 100058622.0 0 6 UNEVALUABLE UNEVALUABLE
659_bZH intergenic(RPS6KA1,ARID1A) RNF157 chr1 26582792 chr17 76165517 TRANSLOCATION TRUTH_659_bZH_11 TRUTH truth 36.0 0 0 0 358 hg19 1 26909283.0 17 74161598.0 0 0 UNEVALUABLE UNEVALUABLE
659_bZH NSUN2 ELMO1 chr5 6607332 chr7 36980207 TRANSLOCATION TRUTH_659_bZH_12 TRUTH truth 28.0 0 0 656 2 hg19 5 6607445.0 7 37019812.0 0 2 UNEVALUABLE UNEVALUABLE
659_bZH DNAH5 TRIO chr5 13839443 chr5 14483822 DUPLICATION TRUTH_659_bZH_13 TRUTH truth 105.0 0 0 479 0 hg19 5 13839552.0 5 14483931.0 0 0 UNEVALUABLE UNEVALUABLE
659_bZH SDK1 ETV1 chr7 3501618 chr7 13951969 DUPLICATION TRUTH_659_bZH_14 TRUTH truth 50.0 0 0 0 5847 hg19 7 3541250.0 7 13991594.0 0 0 UNEVALUABLE UNEVALUABLE
659_bZH SUGCT KBTBD13 chr7 40623326 chr15 65078078 TRANSLOCATION TRUTH_659_bZH_15 TRUTH truth 51.0 0 0 0 2509 hg19 7 40662925.0 15 65370416.0 0 0 UNEVALUABLE UNEVALUABLE
659_bZH UNC93B1 intergenic(EWSR1,GAS2L1) chr11 67995734 chr22 29305407 TRANSLOCATION TRUTH_659_bZH_16 TRUTH truth 56.0 0 0 1288 16 hg19 11 67763205.0 22 29701397.0 0 16 UNEVALUABLE UNEVALUABLE
659_bZH intergenic(CTXND1,ARNT2) MESD chr15 80259849 chr15 80979275 DELETION TRUTH_659_bZH_17 TRUTH truth 50.0 0 0 0 1286 hg19 15 80552191.0 15 81271616.0 0 0 UNEVALUABLE UNEVALUABLE
659_bZH intergenic(LRRC28,MEF2A) EP300 chr15 99518416 chr22 41178435 TRANSLOCATION TRUTH_659_bZH_18 TRUTH truth 228.0 0 0 6 9279 hg19 15 100058621.0 22 41574439.0 0 6 UNEVALUABLE UNEVALUABLE
659_bhK NMT2 intergenic(SORCS1,XPNPEP1) chr10 15109787 chr10 107969670 BND CALL_659_bhK_0 FP call 0.0001 0 0 479 0 hg19 10 15151786.0 10 109729428.0 0 0 UNEVALUABLE UNEVALUABLE
659_bhK intergenic(MINDY3,PTER) RET chr10 16394032 chr10 43102346 DEL CALL_659_bhK_1 TP_DUP call 0.7923 0 0 0 3747 hg19 10 16436031.0 10 43597794.0 0 0 UNEVALUABLE UNEVALUABLE
659_bhK RET intergenic(SORCS1,XPNPEP1) chr10 43102364 chr10 107811962 DEL CALL_659_bhK_2 TP call 0.0031 0 0 3748 1 hg19 10 43597812.0 10 109571720.0 0 1 UNEVALUABLE UNEVALUABLE
659_bhK intergenic(MINDY3,PTER) RET chr10 16394031 chr10 43102345 DELETION TRUTH_659_bhK_3 TRUTH truth 81.0 0 0 0 3746 hg19 10 16436030.0 10 43597793.0 0 0 UNEVALUABLE UNEVALUABLE
659_bhK RET intergenic(SORCS1,XPNPEP1) chr10 43102363 chr10 107811961 DELETION TRUTH_659_bhK_4 TRUTH truth 53.0 0 0 3748 1 hg19 10 43597811.0 10 109571719.0 0 1 UNEVALUABLE UNEVALUABLE
659_c8w TEX44 CHMP1A chr2 231593624 chr16 89647645 BND CALL_659_c8w_0 FP call 0.0006 0 0 2777 695 hg19 2 232458335.0 16 89714053.0 0 695 EVALUABLE BAM_REFUTED
659_c8w TEX44 WDR13 chr2 231594005 chrX 48606400 BND CALL_659_c8w_1 TP call 0.9663 0 0 1836 0 hg19 2 232458716.0 X 48464788.0 0 0 UNEVALUABLE UNEVALUABLE
659_c8w PTCHD4 TEX44 chr6 47929733 chr2 231594006 BND CALL_659_c8w_2 TP_DUP call 0.9952 0 0 0 1832 hg19 6 47897469.0 2 232458717.0 0 0 UNEVALUABLE UNEVALUABLE
659_c8w RSPO3 intergenic(RUNX1T1,TRIQK) chr6 127149207 chr8 92460117 BND CALL_659_c8w_3 FP call 0.2309 0 0 557 0 hg19 6 127470352.0 8 93472345.0 0 0 UNEVALUABLE UNEVALUABLE
659_c8w RSPO3 VCPIP1 chr6 127149216 chr8 66640943 BND CALL_659_c8w_4 FP call 0.0659 0 0 539 0 hg19 6 127470361.0 8 67553178.0 0 0 UNEVALUABLE UNEVALUABLE
659_c8w AGAP3 BRAF chr7 151128156 chr7 140792514 BND CALL_659_c8w_5 TP_DUP call 0.5849 0 0 370 8901 hg19 7 150825243.0 7 140492314.0 0 370 EVALUABLE BAM_REFUTED
659_c8w BRAF AGAP3 chr7 140792503 chr7 151128157 INVERSION TRUTH_659_c8w_6 TRUTH truth 60.0 0 0 8867 371 hg19 7 140492303.0 7 150825244.0 0 371 EVALUABLE BAM_REFUTED
659_c8w TEX44 PTCHD4 chr2 231594005 chr6 47929732 TRANSLOCATION TRUTH_659_c8w_7 TRUTH truth 23.0 0 0 1836 0 hg19 2 232458716.0 6 47897468.0 0 0 UNEVALUABLE UNEVALUABLE
659_c8w TEX44 WDR13 chr2 231594004 chrX 48606397 TRANSLOCATION TRUTH_659_c8w_8 TRUTH truth 27.0 0 0 1839 0 hg19 2 232458715.0 X 48464785.0 0 0 UNEVALUABLE UNEVALUABLE
659_cAr CPSF3 SLC22A23 chr2 9459617 chr6 3299946 BND CALL_659_cAr_0 FP call 0.0 0 0 215 11 hg19 2 9599746.0 6 3300180.0 0 11 UNEVALUABLE UNEVALUABLE
659_cAr NCKAP5 ENSG00000285238 chr2 132833374 chr12 6570334 BND CALL_659_cAr_1 FP call 0.0 0 0 0 1464 hg19 2 133590947.0 12 6679500.0 0 0 UNEVALUABLE UNEVALUABLE
659_cAr TTN intergenic(FOXL1,C16orf95) chr2 178647071 chr16 86678209 BND CALL_659_cAr_2 FP call 0.0004 0 0 862 1 hg19 2 179511798.0 16 86711815.0 0 1 UNEVALUABLE UNEVALUABLE
659_cAr intergenic(KCNE4,SCG2) SOX11 chr2 223430662 chr2 5695790 BND CALL_659_cAr_3 FP call 0.0 0 0 0 0 hg19 2 224295380.0 2 5835922.0 0 0 UNEVALUABLE UNEVALUABLE
659_cAr ENSG00000283149 ENTHD1 chr3 186584509 chr22 39757140 BND CALL_659_cAr_4 FP call 0.0021 0 0 837 7 hg19 3 186302298.0 22 40153145.0 0 7 UNEVALUABLE UNEVALUABLE
659_cAr RPLP0 intergenic(ATL2,HNRNPLL) chr12 120199477 chr2 38482288 BND CALL_659_cAr_5 FP call 0.0 0 0 1166 1915 hg19 12 120637280.0 2 38709430.0 0 1166 EVALUABLE BAM_REFUTED
659_cAr intergenic(CDK5R1,MYO1D) ABCC3 chr17 32492104 chr17 50634943 DEL CALL_659_cAr_6 TP call 0.964 0 0 0 442 hg19 17 30819122.0 17 48712304.0 0 0 UNEVALUABLE UNEVALUABLE
659_cAr MYO1D RARA chr17 32493866 chr17 40342661 BND CALL_659_cAr_7 TP call 0.559 0 0 0 9592 hg19 17 30820884.0 17 38498913.0 0 0 UNEVALUABLE UNEVALUABLE
659_cAr MYO1D ERBB2 chr17 32509778 chr17 39709356 BND CALL_659_cAr_8 FP call 0.0002 0 0 20 7117 hg19 17 30836796.0 17 37865609.0 0 20 EVALUABLE BAM_REFUTED
659_cAr MYO1D CCR7 chr17 32531166 chr17 40555027 DUP CALL_659_cAr_9 TP call 0.9818 0 0 1 2097 hg19 17 30858184.0 17 38711279.0 0 1 UNEVALUABLE UNEVALUABLE
659_cAr MYO1D KRT19 chr17 32579181 chr17 41527841 DEL CALL_659_cAr_10 TP call 0.9202 0 0 2 1504 hg19 17 30906199.0 17 39684093.0 0 2 UNEVALUABLE UNEVALUABLE
659_cAr MYO1D STARD3 chr17 32582905 chr17 39657999 DUP CALL_659_cAr_11 FP call 0.0007 0 0 2 1099 hg19 17 30909923.0 17 37814252.0 0 2 UNEVALUABLE UNEVALUABLE
659_cAr STARD3 RARA chr17 39664109 chr17 40342704 BND CALL_659_cAr_12 FP call 0.0 0 0 0 9803 hg19 17 37820362.0 17 38498956.0 0 0 UNEVALUABLE UNEVALUABLE
659_cAr ERBB2 intergenic(SNF8,GIP) chr17 39688761 chr17 48949441 BND CALL_659_cAr_13 FP call 0.0137 0 0 3 7 hg19 17 37845014.0 17 47026803.0 0 3 UNEVALUABLE UNEVALUABLE
659_cAr ERBB2 NXPH3 chr17 39697459 chr17 49579205 BND CALL_659_cAr_14 TP call 0.9914 0 0 10 1966 hg19 17 37853712.0 17 47656567.0 0 10 UNEVALUABLE UNEVALUABLE
659_cAr ERBB2 GJD3 chr17 39719577 chr17 40363039 DEL CALL_659_cAr_15 FP call 0.0045 0 0 961 1548 hg19 17 37875830.0 17 38519291.0 0 961 EVALUABLE BAM_REFUTED
659_cAr GRB7 intergenic(KRT20,KRT23) chr17 39745288 chr17 40902363 BND CALL_659_cAr_16 FP call 0.0 0 0 1159 1 hg19 17 37901541.0 17 39058615.0 0 1 UNEVALUABLE UNEVALUABLE
659_cAr IKZF3 RAPGEFL1 chr17 39759604 chr17 40186349 DEL CALL_659_cAr_17 FP call 0.0072 0 0 1 30 hg19 17 37915857.0 17 38342601.0 0 1 UNEVALUABLE UNEVALUABLE
659_cAr RARA intergenic(KRTAP1-3,KRTAP1-1) chr17 40357236 chr17 41040481 DEL CALL_659_cAr_18 FP call 0.0005 0 0 1 1126 hg19 17 38513488.0 17 39196733.0 0 1 UNEVALUABLE UNEVALUABLE
659_cAr TOP2A GIP chr17 40412593 chr17 48961747 BND CALL_659_cAr_19 TP call 0.9955 0 0 1667 322 hg19 17 38568845.0 17 47039109.0 0 322 EVALUABLE BAM_REFUTED
659_cAr IGFBP4 intergenic(TNS4,CCR7) chr17 40456478 chr17 40514059 BND CALL_659_cAr_20 FP call 0.0006 0 0 460 0 hg19 17 38612730.0 17 38670311.0 0 0 UNEVALUABLE UNEVALUABLE
659_cAr KRTAP2-1 KRTAP2-2 chr17 41046943 chr17 41054797 DUP CALL_659_cAr_21 FP call 0.0002 19 0 3273 2747 hg19 17 39203195.0 17 39211049.0 19 2747 EVALUABLE BAM_CONFIRMED
659_cAr intergenic(KRTAP2-4,KRTAP4-7) KRT15 chr17 41077175 chr17 41516132 DEL CALL_659_cAr_22 TP call 0.9907 0 0 0 1603 hg19 17 39233427.0 17 39672384.0 0 0 UNEVALUABLE UNEVALUABLE
659_cAr intergenic(KRTAP9-7,KRTAP29-1) RARA chr17 41295792 chr17 40334327 BND CALL_659_cAr_23 FP call 0.0767 0 0 4 8771 hg19 17 39452044.0 17 38490579.0 0 4 UNEVALUABLE UNEVALUABLE
659_cAr intergenic(KRT37,KRT38) FKBP10 chr17 41428445 chr17 41819296 DUP CALL_659_cAr_24 FP call 0.0007 0 0 2 1702 hg19 17 39584697.0 17 39975548.0 0 2 UNEVALUABLE UNEVALUABLE
659_cAr intergenic(KRT38,KRT32) KRT15 chr17 41458829 chr17 41517098 DUP CALL_659_cAr_25 FP call 0.0952 0 0 0 1066 hg19 17 39615081.0 17 39673350.0 0 0 UNEVALUABLE UNEVALUABLE
659_cAr KRT35 intergenic(DLX4,DLX3) chr17 41479480 chr17 49978741 DUP CALL_659_cAr_26 FP call 0.039 0 0 1251 4 hg19 17 39635732.0 17 48056105.0 0 4 UNEVALUABLE UNEVALUABLE
659_cAr HAP1 intergenic(COL1A1,TMEM92) chr17 41732706 chr17 50223717 DUP CALL_659_cAr_27 FP call 0.0 0 0 682 10 hg19 17 39888958.0 17 48301078.0 0 10 UNEVALUABLE UNEVALUABLE
659_cAr JUP KAT7 chr17 41755860 chr17 49818856 DEL CALL_659_cAr_28 FP call 0.0014 0 0 992 11 hg19 17 39912112.0 17 47896218.0 0 11 UNEVALUABLE UNEVALUABLE
659_cAr JUP SPAG9 chr17 41763296 chr17 51081013 DEL CALL_659_cAr_29 FP call 0.0002 0 0 903 11 hg19 17 39919548.0 17 49158374.0 0 11 UNEVALUABLE UNEVALUABLE
659_cAr KLHL10 intergenic(IGFBP4,TNS4) chr17 41842042 chr17 40466279 BND CALL_659_cAr_30 FP call 0.0019 0 0 1601 0 hg19 17 39998294.0 17 38622531.0 0 0 UNEVALUABLE UNEVALUABLE
659_cAr ABI3 intergenic(COL1A1,TMEM92) chr17 49222127 chr17 50205193 DUP CALL_659_cAr_31 TP call 0.9783 0 0 1398 0 hg19 17 47299489.0 17 48282554.0 0 0 UNEVALUABLE UNEVALUABLE
659_cAr PHB1 MYO1D chr17 49404710 chr17 32780646 BND CALL_659_cAr_32 FP call 0.0001 0 0 521 776 hg19 17 47482072.0 17 31107664.0 0 521 EVALUABLE BAM_REFUTED
659_cAr CACNA1G MYO1D chr17 50626566 chr17 32586562 BND CALL_659_cAr_33 FP call 0.1047 0 0 1977 0 hg19 17 48703927.0 17 30913580.0 0 0 UNEVALUABLE UNEVALUABLE
659_cAr DSCAM MX2 chr21 40179369 chr21 41406841 BND CALL_659_cAr_34 TP call 0.8965 0 0 860 1040 hg19 21 41551296.0 21 42778768.0 0 860 EVALUABLE BAM_REFUTED
659_cAr MYO1D CCR7 chr17 32531165 chr17 40555026 DUPLICATION TRUTH_659_cAr_35 TRUTH truth 466.0 0 0 1 2097 hg19 17 30858183.0 17 38711278.0 0 1 UNEVALUABLE UNEVALUABLE
659_cAr MYO1D RARA chr17 32493864 chr17 40342659 INVERSION TRUTH_659_cAr_36 TRUTH truth 206.0 0 0 0 9571 hg19 17 30820882.0 17 38498911.0 0 0 UNEVALUABLE UNEVALUABLE
659_cAr intergenic(ZNF207,PSMD11) FKBP10 chr17 32413989 chr17 41820439 DUPLICATION TRUTH_659_cAr_37 TRUTH truth 54.0 0 0 3 1334 hg19 17 30741008.0 17 39976691.0 0 3 UNEVALUABLE UNEVALUABLE
659_cAr intergenic(KRTAP2-4,KRTAP4-7) KRT15 chr17 41077174 chr17 41516131 DELETION TRUTH_659_cAr_38 TRUTH truth 95.0 0 0 0 1606 hg19 17 39233426.0 17 39672383.0 0 0 UNEVALUABLE UNEVALUABLE
659_cAr ERBB2 NXPH3 chr17 39697458 chr17 49579204 INVERSION TRUTH_659_cAr_39 TRUTH truth 146.0 0 0 10 1967 hg19 17 37853711.0 17 47656566.0 0 10 UNEVALUABLE UNEVALUABLE
659_cAr ABI3 intergenic(COL1A1,TMEM92) chr17 49222126 chr17 50205192 DUPLICATION TRUTH_659_cAr_40 TRUTH truth 437.0 0 0 1394 0 hg19 17 47299488.0 17 48282553.0 0 0 UNEVALUABLE UNEVALUABLE
659_cAr FKBP10 UTP18 chr17 41820418 chr17 51287347 DELETION TRUTH_659_cAr_41 TRUTH truth 99.0 0 0 1337 19 hg19 17 39976670.0 17 49364708.0 0 19 UNEVALUABLE UNEVALUABLE
659_cAr TOP2A GIP chr17 40412591 chr17 48961745 INVERSION TRUTH_659_cAr_42 TRUTH truth 211.0 0 0 1661 322 hg19 17 38568843.0 17 47039107.0 0 322 EVALUABLE BAM_REFUTED
659_cAr DSCAM MX2 chr21 40179368 chr21 41406840 INVERSION TRUTH_659_cAr_43 TRUTH truth 26.0 0 0 861 1040 hg19 21 41551295.0 21 42778767.0 0 861 EVALUABLE BAM_REFUTED
659_cAr MYO1D TOP2A chr17 32713565 chr17 40413275 DUPLICATION TRUTH_659_cAr_44 TRUTH truth 122.0 0 0 19 3143 hg19 17 31040583.0 17 38569527.0 0 19 UNEVALUABLE UNEVALUABLE
659_cAr intergenic(CDK5R1,MYO1D) ABCC3 chr17 32492103 chr17 50634942 DELETION TRUTH_659_cAr_45 TRUTH truth 597.0 0 0 0 442 hg19 17 30819121.0 17 48712303.0 0 0 UNEVALUABLE UNEVALUABLE
659_cAr MYO1D KRT19 chr17 32579180 chr17 41527840 DELETION TRUTH_659_cAr_46 TRUTH truth 61.0 0 0 2 1504 hg19 17 30906198.0 17 39684092.0 0 2 UNEVALUABLE UNEVALUABLE
659_cCU SEMA6C GOLPH3L chr1 151135214 chr1 150647596 BND CALL_659_cCU_0 TP_DUP call 0.9982 0 0 1835 2 hg19 1 151107690.0 1 150620072.0 0 2 UNEVALUABLE UNEVALUABLE
659_cCU intergenic(CNTNAP5,GYPC) ERCC3 chr2 125315804 chr2 127261290 DUP CALL_659_cCU_1 FP call 0.0009 0 0 5 934 hg19 2 126073381.0 2 128018866.0 0 5 UNEVALUABLE UNEVALUABLE
659_cCU intergenic(ZNF804A,FSIP2) FSIP2 chr2 185401749 chr2 185788944 BND CALL_659_cCU_2 FP call 0.3199 0 0 0 1378 hg19 2 186266476.0 2 186653671.0 0 0 UNEVALUABLE UNEVALUABLE
659_cCU CHRNA9 RBM47 chr4 40337249 chr4 40523171 DUP CALL_659_cCU_3 FP call 0.5812 0 0 645 19 hg19 4 40339266.0 4 40525188.0 0 19 UNEVALUABLE UNEVALUABLE
659_cCU CXCL8 intergenic(CXCL8,CXCL6) chr4 73741584 chr4 73744733 DEL CALL_659_cCU_4 FP call 0.0129 0 0 579 0 hg19 4 74607301.0 4 74610450.0 0 0 UNEVALUABLE UNEVALUABLE
659_cCU intergenic(CNOT6L,MRPL1) FAM47E-STBD1 chr4 77829934 chr4 76309248 BND CALL_659_cCU_5 FP call 0.9416 0 0 3 2339 hg19 4 78751088.0 4 77230401.0 0 3 UNEVALUABLE UNEVALUABLE
659_cCU intergenic(HSD17B4,PRR16) CSF1R chr5 120450648 chr5 150053899 DUP CALL_659_cCU_6 FP call 0.959 0 0 0 3057 hg19 5 119786343.0 5 149433462.0 0 0 UNEVALUABLE UNEVALUABLE
659_cCU ZNF608 CSF1R chr5 124726524 chr5 150054373 BND CALL_659_cCU_7 TP call 0.9844 0 0 0 3230 hg19 5 124062217.0 5 149433936.0 0 0 UNEVALUABLE UNEVALUABLE
659_cCU intergenic(PCDHB7,PCDHB8) PCDHB8 chr5 141177731 chr5 141178392 BND CALL_659_cCU_8 FP call 0.0005 667 0 1247 5521 hg19 5 140557312.0 5 140557973.0 667 1247 EVALUABLE BAM_CONFIRMED
659_cCU RBM22 CSF1R chr5 150696860 chr5 150055335 BND CALL_659_cCU_9 FP call 0.0364 0 0 1252 1120 hg19 5 150076422.0 5 149434898.0 0 1120 EVALUABLE BAM_REFUTED
659_cCU intergenic(RIMS1,KCNQ5) MYL6B chr6 72594159 chr12 56159637 BND CALL_659_cCU_10 TP call 0.9964 0 0 1 1965 hg19 6 73303888.0 12 56553421.0 0 1 UNEVALUABLE UNEVALUABLE
659_cCU intergenic(CTTNBP2,LSM8) PNPLA8 chr7 118041275 chr7 108496688 BND CALL_659_cCU_11 FP call 0.7307 0 0 1 306 hg19 7 117681329.0 7 108137132.0 0 1 UNEVALUABLE UNEVALUABLE
659_cCU FASTK TMEM64 chr7 151077331 chr8 90745064 BND CALL_659_cCU_12 FP call 0.0427 0 0 2274 0 hg19 7 150774418.0 8 91757292.0 0 0 UNEVALUABLE UNEVALUABLE
659_cCU RP1 GDAP1 chr8 54621076 chr8 74416016 DEL CALL_659_cCU_13 FP call 0.9721 0 0 2286 0 hg19 8 55533636.0 8 75328251.0 0 0 UNEVALUABLE UNEVALUABLE
659_cCU RP1 RDH10 chr8 54621147 chr8 73309283 BND CALL_659_cCU_14 TP call 0.9651 0 0 2366 0 hg19 8 55533707.0 8 74221518.0 0 0 UNEVALUABLE UNEVALUABLE
659_cCU TOX intergenic(YTHDF3,BHLHE22) chr8 58838228 chr8 63403209 DUP CALL_659_cCU_15 TP call 0.1862 0 0 840 1 hg19 8 59750787.0 8 64315767.0 0 1 UNEVALUABLE UNEVALUABLE
659_cCU ZFPM2 DUS4L chr8 105623809 chr7 107573786 BND CALL_659_cCU_16 TP_DUP call 0.7525 0 0 0 839 hg19 8 106636037.0 7 107214231.0 0 0 UNEVALUABLE UNEVALUABLE
659_cCU ENY2 ZNF578 chr8 109343797 chr19 52511283 BND CALL_659_cCU_17 TP call 0.9894 0 0 366 4588 hg19 8 110356026.0 19 53014536.0 0 366 EVALUABLE BAM_REFUTED
659_cCU SAMD12 ATAD2 chr8 118379620 chr8 123379213 DUP CALL_659_cCU_18 FP call 0.7731 0 0 1166 6 hg19 8 119391859.0 8 124391453.0 0 6 UNEVALUABLE UNEVALUABLE
659_cCU SAMD12 TAF2 chr8 118386676 chr8 119788809 DEL CALL_659_cCU_19 FP call 0.2215 0 0 0 572 hg19 8 119398915.0 8 120801049.0 0 0 UNEVALUABLE UNEVALUABLE
659_cCU NSMCE2 SELENBP1 chr8 125142530 chr1 151369893 BND CALL_659_cCU_20 TP_DUP call 0.9962 0 0 7 1521 hg19 8 126154772.0 1 151342369.0 0 7 UNEVALUABLE UNEVALUABLE
659_cCU ASTN2 KIF22 chr9 117066500 chr16 29799485 BND CALL_659_cCU_21 FP call 0.0422 0 0 2 2223 hg19 9 119828779.0 16 29810806.0 0 2 UNEVALUABLE UNEVALUABLE
659_cCU NCS1 PALM3 chr9 130174895 chr19 14053646 BND CALL_659_cCU_22 FP call 0.002 0 0 17 2401 hg19 9 132937174.0 19 14164458.0 0 17 UNEVALUABLE UNEVALUABLE
659_cCU CHRNA10 COL17A1 chr11 3666127 chr10 104067580 BND CALL_659_cCU_23 FP call 0.0002 0 0 1470 0 hg19 11 3687357.0 10 105827338.0 0 0 UNEVALUABLE UNEVALUABLE
659_cCU intergenic(OR4E1,DAD1) RPGRIP1 chr14 22507999 chr14 21326114 BND CALL_659_cCU_24 FP call 0.8883 0 0 25 794 hg19 14 22976984.0 14 21794273.0 0 25 EVALUABLE BAM_REFUTED
659_cCU DYNC1H1 WDR20 chr14 102005199 chr14 102195344 DUP CALL_659_cCU_25 TP call 0.0177 0 0 1846 811 hg19 14 102471536.0 14 102661681.0 0 811 EVALUABLE BAM_REFUTED
659_cCU NPIPB12 POLD1 chr16 29497232 chr19 50407340 BND CALL_659_cCU_26 FP call 0.0002 0 0 2 2982 hg19 16 29508553.0 19 50910597.0 0 2 UNEVALUABLE UNEVALUABLE
659_cCU NUP93 MLYCD chr16 56730175 chr16 83932986 DUP CALL_659_cCU_27 FP call 0.9568 0 0 1 0 hg19 16 56764087.0 16 83966591.0 0 0 UNEVALUABLE UNEVALUABLE
659_cCU ARRB2 CDC20B chr17 4719307 chr5 55143622 BND CALL_659_cCU_28 TP_DUP call 0.7334 0 0 1045 592 hg19 17 4622602.0 5 54439450.0 0 592 EVALUABLE BAM_REFUTED
659_cCU CCL13 intergenic(KRT28,KRT10) chr17 34356559 chr17 40809530 BND CALL_659_cCU_29 TP call 0.6614 0 0 235 0 hg19 17 32683578.0 17 38965782.0 0 0 UNEVALUABLE UNEVALUABLE
659_cCU MSL1 CGB5 chr17 40126730 chr19 49045027 BND CALL_659_cCU_30 TP call 0.001 0 0 683 2338 hg19 17 38282983.0 19 49548284.0 0 683 EVALUABLE BAM_REFUTED
659_cCU FBN3 CERS4 chr19 8075079 chr19 8219096 DUP CALL_659_cCU_31 TP call 0.7373 0 0 1241 8 hg19 19 8139963.0 19 8283980.0 0 8 UNEVALUABLE UNEVALUABLE
659_cCU ZSWIM4 MAP4K1 chr19 13828324 chr19 38614429 DUP CALL_659_cCU_32 FP call 0.4398 0 0 385 1212 hg19 19 13939138.0 19 39105069.0 0 385 EVALUABLE BAM_REFUTED
659_cCU PALM3 UPB1 chr19 14053775 chr22 24509286 BND CALL_659_cCU_33 TP call 0.0002 0 0 2798 1 hg19 19 14164587.0 22 24905254.0 0 1 UNEVALUABLE UNEVALUABLE
659_cCU SLC1A6 MPV17L2 chr19 14963622 chr19 18193416 BND CALL_659_cCU_34 TP call 0.537 0 0 11 1893 hg19 19 15074434.0 19 18304226.0 0 11 UNEVALUABLE UNEVALUABLE
659_cCU ENSG00000267335 PNKP chr19 49029940 chr19 49860116 DUP CALL_659_cCU_35 FP call 0.0027 0 0 283 1094 hg19 19 49533197.0 19 50363373.0 0 283 EVALUABLE BAM_REFUTED
659_cCU SHANK1 intergenic(PEX2,PKIA) chr19 50668137 chr8 78470236 BND CALL_659_cCU_36 FP call 0.0003 0 0 3266 1 hg19 19 51171394.0 8 79382471.0 0 1 UNEVALUABLE UNEVALUABLE
659_cCU SHANK1 intergenic(HEY1,MRPS28) chr19 50713925 chr8 79813714 BND CALL_659_cCU_37 FP call 0.0 0 0 1279 10 hg19 19 51217182.0 8 80725949.0 0 10 UNEVALUABLE UNEVALUABLE
659_cCU GPR32 LRRC4B chr19 50771233 chr19 50564547 BND CALL_659_cCU_38 FP call 0.0003 0 0 2153 2 hg19 19 51274490.0 19 51067804.0 0 2 UNEVALUABLE UNEVALUABLE
659_cCU PRKCG intergenic(SULT1A2,SULT1A1) chr19 53900463 chr16 28603899 BND CALL_659_cCU_39 TP_DUP call 0.9955 0 0 1836 107 hg19 19 54403717.0 16 28615220.0 0 107 EVALUABLE BAM_REFUTED
659_cCU PPDPF TSHZ2 chr20 63521697 chr20 53194493 BND CALL_659_cCU_40 TP_DUP call 0.967 0 0 1593 0 hg19 20 62153050.0 20 51811032.0 0 0 UNEVALUABLE UNEVALUABLE
659_cCU intergenic(NCAM2,MRPL39) HUNK chr21 24273090 chr21 31999074 DEL CALL_659_cCU_41 TP call 0.9937 0 0 6 1758 hg19 21 25645403.0 21 33371387.0 0 6 UNEVALUABLE UNEVALUABLE
659_cCU GOLPH3L SEMA6C chr1 150647592 chr1 151135214 INVERSION TRUTH_659_cCU_42 TRUTH truth 103.0 0 0 2 1835 hg19 1 150620068.0 1 151107690.0 0 2 UNEVALUABLE UNEVALUABLE
659_cCU SELENBP1 NSMCE2 chr1 151369890 chr8 125142529 TRANSLOCATION TRUTH_659_cCU_43 TRUTH truth 85.0 0 0 1521 7 hg19 1 151342366.0 8 126154771.0 0 7 UNEVALUABLE UNEVALUABLE
659_cCU CDC20B ARRB2 chr5 55143621 chr17 4719306 TRANSLOCATION TRUTH_659_cCU_44 TRUTH truth 58.0 0 0 592 1046 hg19 5 54439449.0 17 4622601.0 0 592 EVALUABLE BAM_REFUTED
659_cCU ZNF608 CSF1R chr5 124726522 chr5 150054371 INVERSION TRUTH_659_cCU_45 TRUTH truth 135.0 0 0 0 3230 hg19 5 124062215.0 5 149433934.0 0 0 UNEVALUABLE UNEVALUABLE
659_cCU intergenic(RIMS1,KCNQ5) MYL6B chr6 72594158 chr12 56159636 TRANSLOCATION TRUTH_659_cCU_46 TRUTH truth 51.0 0 0 1 1964 hg19 6 73303887.0 12 56553420.0 0 1 UNEVALUABLE UNEVALUABLE
659_cCU DUS4L-BCAP29 ZFPM2 chr7 107573785 chr8 105623808 TRANSLOCATION TRUTH_659_cCU_47 TRUTH truth 48.0 0 0 839 0 hg19 7 107214230.0 8 106636036.0 0 0 UNEVALUABLE UNEVALUABLE
659_cCU RP1 RDH10 chr8 54621145 chr8 73309281 INVERSION TRUTH_659_cCU_48 TRUTH truth 42.0 0 0 2366 0 hg19 8 55533705.0 8 74221516.0 0 0 UNEVALUABLE UNEVALUABLE
659_cCU TOX intergenic(YTHDF3,BHLHE22) chr8 58838227 chr8 63403208 DUPLICATION TRUTH_659_cCU_49 TRUTH truth 38.0 0 0 840 1 hg19 8 59750786.0 8 64315766.0 0 1 UNEVALUABLE UNEVALUABLE
659_cCU intergenic(RUNX1T1,TRIQK) ARRB2 chr8 92765331 chr17 4719362 TRANSLOCATION TRUTH_659_cCU_50 TRUTH truth 56.0 0 0 3 1017 hg19 8 93777559.0 17 4622657.0 0 3 UNEVALUABLE UNEVALUABLE
659_cCU ENY2 ZNF578 chr8 109343796 chr19 52511280 TRANSLOCATION TRUTH_659_cCU_51 TRUTH truth 54.0 0 0 367 4599 hg19 8 110356025.0 19 53014533.0 0 367 EVALUABLE BAM_REFUTED
659_cCU DYNC1H1 WDR20 chr14 102005198 chr14 102195343 DUPLICATION TRUTH_659_cCU_52 TRUTH truth 28.0 0 0 1849 812 hg19 14 102471535.0 14 102661680.0 0 812 EVALUABLE BAM_REFUTED
659_cCU intergenic(SULT1A2,SULT1A1) PRKCG chr16 28603894 chr19 53900462 TRANSLOCATION TRUTH_659_cCU_53 TRUTH truth 77.0 0 0 107 1836 hg19 16 28615215.0 19 54403716.0 0 107 EVALUABLE BAM_REFUTED
659_cCU TUFM intergenic(SIGLEC9,SIGLEC7) chr16 28843014 chr19 51139514 TRANSLOCATION TRUTH_659_cCU_54 TRUTH truth 26.0 0 0 745 2 hg19 16 28854335.0 19 51642771.0 0 2 UNEVALUABLE UNEVALUABLE
659_cCU CCL13 intergenic(KRT28,KRT10) chr17 34356558 chr17 40809529 INVERSION TRUTH_659_cCU_55 TRUTH truth 33.0 0 0 235 0 hg19 17 32683577.0 17 38965781.0 0 0 UNEVALUABLE UNEVALUABLE
659_cCU MSL1 CGB5 chr17 40126729 chr19 49045026 TRANSLOCATION TRUTH_659_cCU_56 TRUTH truth 32.0 0 0 686 2338 hg19 17 38282982.0 19 49548283.0 0 686 EVALUABLE BAM_REFUTED
659_cCU FBN3 CERS4 chr19 8075078 chr19 8219095 DUPLICATION TRUTH_659_cCU_57 TRUTH truth 26.0 0 0 1240 8 hg19 19 8139962.0 19 8283979.0 0 8 UNEVALUABLE UNEVALUABLE
659_cCU PALM3 UPB1 chr19 14053774 chr22 24509285 TRANSLOCATION TRUTH_659_cCU_58 TRUTH truth 36.0 0 0 2796 1 hg19 19 14164586.0 22 24905253.0 0 1 UNEVALUABLE UNEVALUABLE
659_cCU SLC1A6 MPV17L2 chr19 14963620 chr19 18193414 INVERSION TRUTH_659_cCU_59 TRUTH truth 28.0 0 0 11 1888 hg19 19 15074432.0 19 18304224.0 0 11 UNEVALUABLE UNEVALUABLE
659_cCU TSHZ2 PPDPF chr20 53194491 chr20 63521695 INVERSION TRUTH_659_cCU_60 TRUTH truth 41.0 0 0 0 1593 hg19 20 51811030.0 20 62153048.0 0 0 UNEVALUABLE UNEVALUABLE
659_cCU intergenic(NCAM2,MRPL39) HUNK chr21 24273089 chr21 31999073 DELETION TRUTH_659_cCU_61 TRUTH truth 47.0 0 0 6 1759 hg19 21 25645402.0 21 33371386.0 0 6 UNEVALUABLE UNEVALUABLE
659_cIX CPS1 intergenic(TEX51,BIN1) chr2 210556764 chr2 126975369 BND CALL_659_cIX_0 TP_DUP call 0.9969 0 0 667 27 hg19 2 211421488.0 2 127732945.0 0 27 EVALUABLE BAM_REFUTED
659_cIX NDRG2 SEC24D chr14 21022441 chr4 118754580 BND CALL_659_cIX_1 FP call 0.001 0 0 1405 1 hg19 14 21490600.0 4 119675735.0 0 1 UNEVALUABLE UNEVALUABLE
659_cIX RAB11FIP3 WDR90 chr16 484749 chr16 655063 DEL CALL_659_cIX_2 FP call 0.7186 0 0 10 1975 hg19 16 534749.0 16 705063.0 0 10 UNEVALUABLE UNEVALUABLE
659_cIX intergenic(TEX51,BIN1) CPS1 chr2 126975367 chr2 210556762 INVERSION TRUTH_659_cIX_3 TRUTH truth 54.0 0 0 27 667 hg19 2 127732943.0 2 211421486.0 0 27 EVALUABLE BAM_REFUTED
659_cTS intergenic(TRIB2,LRATD1) ARHGAP31 chr2 13406183 chr3 119415130 BND CALL_659_cTS_0 FP call 0.0078 0 0 1 3980 hg19 2.0 13546308.0 3.0 119133977.0 0 1 UNEVALUABLE UNEVALUABLE
659_cTS intergenic(CPOX,ST3GAL6) ALPP chr3 98645523 chr2 232381595 BND CALL_659_cTS_1 FP call 0.6208 0 0 2 3853 hg19 3.0 98364367.0 2.0 233246305.0 0 2 UNEVALUABLE UNEVALUABLE
659_cTS GOLGB1 EAF2 chr3 121691713 chr3 121855364 DUP CALL_659_cTS_2 FP call 0.9588 0 0 1683 92 hg19 3.0 121410560.0 3.0 121574211.0 0 92 EVALUABLE BAM_REFUTED
659_cTS intergenic(CHCHD6,PLXNA1) TMPRSS7 chr3 126963568 chr3 112063570 BND CALL_659_cTS_3 FP call 0.8723 0 0 0 301 hg19 3.0 126682411.0 3.0 111782417.0 0 0 UNEVALUABLE UNEVALUABLE
659_cTS intergenic(LINGO2,ACO1) DHRS7B chr9 30619286 chr17 21178248 BND CALL_659_cTS_4 TP call 0.9988 0 0 0 487 hg19 9.0 30619284.0 17.0 21081561.0 0 0 UNEVALUABLE UNEVALUABLE
659_cTS NFX1 ARID3C chr9 33336519 chr9 34623629 BND CALL_659_cTS_5 TP call 0.9817 0 0 4 2594 hg19 9.0 33336517.0 9.0 34623626.0 0 4 UNEVALUABLE UNEVALUABLE
659_cTS TESK1 LINGO2 chr9 35609483 chr9 28691488 BND CALL_659_cTS_6 TP_DUP call 0.7993 0 0 3104 2 hg19 9.0 35609480.0 9.0 28691486.0 0 2 UNEVALUABLE UNEVALUABLE
659_cTS intergenic(.,GOLGA6L6) ARHGAP31 chr15 20393073 chr3 119415133 BND CALL_659_cTS_7 FP call 0.0202 0 0 6 3986 hg19 15.0 20598326.0 3.0 119133980.0 0 6 UNEVALUABLE UNEVALUABLE
659_cTS TMEM114 SLC5A2 chr16 8582270 chr16 31488677 BND CALL_659_cTS_8 TP call 0.9888 0 0 18 2567 hg19 16.0 8632272.0 16.0 31499998.0 0 18 UNEVALUABLE UNEVALUABLE
659_cTS TXNDC11 intergenic(ARHGAP17,LCMT1) chr16 11688333 chr16 25040994 DUP CALL_659_cTS_9 FP call 0.621 0 0 675 0 hg19 16.0 11782189.0 16.0 25052315.0 0 0 UNEVALUABLE UNEVALUABLE
659_cTS NPIPB2 TLCD3B chr16 11953015 chr16 30029482 BND CALL_659_cTS_10 TP call 0.9709 0 0 16 529 hg19 16.0 12046872.0 16.0 30040803.0 0 16 UNEVALUABLE UNEVALUABLE
659_cTS DNAH3 PALB2 chr16 21105808 chr16 23637963 DEL CALL_659_cTS_11 FP call 0.9889 0 0 14 1287 hg19 16.0 21117129.0 16.0 23649284.0 0 14 UNEVALUABLE UNEVALUABLE
659_cTS PIGL TVP23B chr17 16275910 chr17 18798916 DUP CALL_659_cTS_12 FP call 0.0061 0 0 2 864 hg19 17.0 16179224.0 17.0 18702229.0 0 2 UNEVALUABLE UNEVALUABLE
659_cTS FLCN RAI1 chr17 17213783 chr17 17704183 DEL CALL_659_cTS_13 FP call 0.0586 0 0 2070 4 hg19 17.0 17117097.0 17.0 17607497.0 0 4 UNEVALUABLE UNEVALUABLE
659_cTS intergenic(KCNJ18,WSB1) TP53 chr17 26620142 chr17 7673766 BND CALL_659_cTS_14 FP call 0.0 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_cTS SPAG5 DHX8 chr17 28577810 chr17 43492719 BND CALL_659_cTS_15 TP call 0.8325 0 0 831 1311 hg19 17.0 26904828.0 17.0 41570087.0 0 831 EVALUABLE BAM_REFUTED
659_cTS intergenic(CA10,KIF2B) EPN2 chr17 52259134 chr17 19328754 BND CALL_659_cTS_16 FP call 0.5306 0 0 2 636 hg19 17.0 50336494.0 17.0 19232067.0 0 2 UNEVALUABLE UNEVALUABLE
659_cTS LINGO2 TESK1 chr9 28691486 chr9 35609483 INVERSION TRUTH_659_cTS_17 TRUTH truth 32.0 0 0 2 3104 hg19 9.0 28691484.0 9.0 35609480.0 0 2 UNEVALUABLE UNEVALUABLE
659_cTS intergenic(LINGO2,ACO1) DHRS7B chr9 30619285 chr17 21178247 TRANSLOCATION TRUTH_659_cTS_18 TRUTH truth 60.0 0 0 0 487 hg19 9.0 30619283.0 17.0 21081560.0 0 0 UNEVALUABLE UNEVALUABLE
659_cTS NFX1 ARID3C chr9 33336517 chr9 34623627 INVERSION TRUTH_659_cTS_19 TRUTH truth 54.0 0 0 4 2594 hg19 9.0 33336515.0 9.0 34623624.0 0 4 UNEVALUABLE UNEVALUABLE
659_cTS TMEM114 SLC5A2 chr16 8582268 chr16 31488675 INVERSION TRUTH_659_cTS_20 TRUTH truth 33.0 0 0 18 2568 hg19 16.0 8632270.0 16.0 31499996.0 0 18 UNEVALUABLE UNEVALUABLE
659_cTS NPIPB2 TLCD3B chr16 11953014 chr16 30029481 INVERSION TRUTH_659_cTS_21 TRUTH truth 33.0 0 0 16 527 hg19 16.0 12046871.0 16.0 30040802.0 0 16 UNEVALUABLE UNEVALUABLE
659_cTS RSKR DHX8 chr17 28577808 chr17 43492717 INVERSION TRUTH_659_cTS_22 TRUTH truth 38.0 0 0 827 1312 hg19 17.0 26904826.0 17.0 41570085.0 0 827 EVALUABLE BAM_REFUTED
659_cd9 DNAH5 FBXL7 chr5 13900248 chr5 15803627 BND CALL_659_cd9_0 FP call 0.0004 0 0 573 0 hg19 5 13900357.0 5 15803736.0 0 0 UNEVALUABLE UNEVALUABLE
659_cd9 intergenic(ANKH,FBXL7) CCT2 chr5 15368821 chr12 69593045 BND CALL_659_cd9_1 FP call 0.0002 0 0 6 605 hg19 5 15368930.0 12 69986825.0 0 6 UNEVALUABLE UNEVALUABLE
659_cd9 MYO10 CDH18 chr5 16676110 chr5 19703882 DEL CALL_659_cd9_2 FP call 0.9323 0 0 647 6 hg19 5 16676219.0 5 19703991.0 0 6 UNEVALUABLE UNEVALUABLE
659_cd9 MYO10 CPM chr5 16815596 chr12 68932770 BND CALL_659_cd9_3 FP call 0.0009 0 0 11 729 hg19 5 16815705.0 12 69326550.0 0 11 UNEVALUABLE UNEVALUABLE
659_cd9 intergenic(CDH10,CDH9) PRLR chr5 25438314 chr5 35086243 DUP CALL_659_cd9_4 TP call 0.6439 0 0 4 604 hg19 5 25438423.0 5 35086345.0 0 4 UNEVALUABLE UNEVALUABLE
659_cd9 intergenic(CDH9,CDH6) TRIO chr5 28407568 chr5 14369498 BND CALL_659_cd9_5 TP_DUP call 0.0 0 0 6 1323 hg19 5 28407675.0 5 14369607.0 0 6 UNEVALUABLE UNEVALUABLE
659_cd9 WDR70 MDM2 chr5 37393532 chr12 68842585 BND CALL_659_cd9_6 FP call 0.0 0 0 4 6 hg19 5 37393634.0 12 69236365.0 0 4 UNEVALUABLE UNEVALUABLE
659_cd9 intergenic(PLCXD3,OXCT1) LRRC10 chr5 41669121 chr12 69610314 BND CALL_659_cd9_7 FP call 0.0032 0 0 4 2390 hg19 5 41669223.0 12 70004094.0 0 4 UNEVALUABLE UNEVALUABLE
659_cd9 B4GALNT1 intergenic(DAB2,TTC33) chr12 57627782 chr5 40076371 BND CALL_659_cd9_8 TP_DUP call 0.6589 0 0 2265 0 hg19 12 58021565.0 5 40076473.0 0 0 UNEVALUABLE UNEVALUABLE
659_cd9 TAFA2 NUP107 chr12 62164207 chr12 68731230 BND CALL_659_cd9_9 TP call 0.9961 0 0 3 737 hg19 12 62557988.0 12 69125010.0 0 3 UNEVALUABLE UNEVALUABLE
659_cd9 HMGA2 CYP27B1 chr12 65827232 chr12 57766017 BND CALL_659_cd9_10 TP_DUP call 0.0001 0 0 10 1286 hg19 12 66221012.0 12 58159800.0 0 10 UNEVALUABLE UNEVALUABLE
659_cd9 HELB intergenic(CPSF6,LYZ) chr12 66302764 chr12 69313307 DEL CALL_659_cd9_11 FP call 0.0076 0 0 607 0 hg19 12 66696544.0 12 69707087.0 0 0 UNEVALUABLE UNEVALUABLE
659_cd9 HELB intergenic(CDH18,CDH12) chr12 66310267 chr5 21138632 BND CALL_659_cd9_12 FP call 0.0514 0 0 1935 11 hg19 12 66704047.0 5 21138741.0 0 11 UNEVALUABLE UNEVALUABLE
659_cd9 intergenic(CPM,CPSF6) PLCH2 chr12 69035512 chr1 2504609 BND CALL_659_cd9_13 TP_DUP call 0.7435 0 0 7 2614 hg19 12 69429292.0 1 2436048.0 0 7 UNEVALUABLE UNEVALUABLE
659_cd9 MYRFL NIPBL chr12 69952172 chr5 36882029 BND CALL_659_cd9_14 TP_DUP call 0.989 0 0 348 2 hg19 12 70345952.0 5 36882131.0 0 2 UNEVALUABLE UNEVALUABLE
659_cd9 TAFA2 NUP107 chr12 62164205 chr12 68731228 INVERSION TRUTH_659_cd9_15 TRUTH truth 636.0 0 0 3 737 hg19 12 62557986.0 12 69125008.0 0 3 UNEVALUABLE UNEVALUABLE
659_cd9 CYP27B1 HMGA2 chr12 57766015 chr12 65827232 INVERSION TRUTH_659_cd9_16 TRUTH truth 32.0 0 0 1290 10 hg19 12 58159798.0 12 66221012.0 0 10 UNEVALUABLE UNEVALUABLE
659_cd9 TRIO intergenic(CDH9,CDH6) chr5 14369493 chr5 28407569 INVERSION TRUTH_659_cd9_17 TRUTH truth 50.0 0 0 1330 6 hg19 5 14369602.0 5 28407676.0 0 6 UNEVALUABLE UNEVALUABLE
659_cd9 NIPBL MYRFL chr5 36882028 chr12 69952171 TRANSLOCATION TRUTH_659_cd9_18 TRUTH truth 505.0 0 0 2 347 hg19 5 36882130.0 12 70345951.0 0 2 UNEVALUABLE UNEVALUABLE
659_cd9 intergenic(DAB2,TTC33) B4GALNT1 chr5 40076368 chr12 57627781 TRANSLOCATION TRUTH_659_cd9_19 TRUTH truth 981.0 0 0 0 2262 hg19 5 40076470.0 12 58021564.0 0 0 UNEVALUABLE UNEVALUABLE
659_cd9 intergenic(CDH10,CDH9) PRLR chr5 25438313 chr5 35086242 DUPLICATION TRUTH_659_cd9_20 TRUTH truth 221.0 0 0 4 604 hg19 5 25438422.0 5 35086344.0 0 4 UNEVALUABLE UNEVALUABLE
659_cd9 PLCH2 intergenic(CPM,CPSF6) chr1 2504604 chr12 69035511 TRANSLOCATION TRUTH_659_cd9_21 TRUTH truth 51.0 0 0 2607 7 hg19 1 2436043.0 12 69429291.0 0 7 UNEVALUABLE UNEVALUABLE
659_csY REG3G REG3A chr2 79027082 chr2 79158457 BND CALL_659_csY_0 FP call 0.2654 0 0 1317 1372 hg19 2.0 79254208.0 2 79385583.0 0 1317 EVALUABLE BAM_REFUTED
659_csY intergenic(RAB6D,MZT2A) GNAQ chr2 131425309 chr9 78031628 BND CALL_659_csY_1 FP call 0.0074 0 0 956 1023 hg19 2.0 132182882.0 9 80646544.0 0 956 EVALUABLE BAM_REFUTED
659_csY THSD7B HLA-F chr2 136890234 chr6 29722954 BND CALL_659_csY_2 FP call 0.0046 0 0 5 264 hg19 2.0 137647804.0 6 29690731.0 0 5 UNEVALUABLE UNEVALUABLE
659_csY RAB5A CSMD3 chr3 19975328 chr8 112976133 BND CALL_659_csY_3 FP call 0.0 0 0 493 257 hg19 3.0 20016820.0 8 113988362.0 0 257 EVALUABLE BAM_REFUTED
659_csY intergenic(APOD,MUC20) MUC20 chr3 195619905 chr3 195726281 DEL CALL_659_csY_4 FP call 0.2816 2 0 4352 2956 hg19 3.0 195346776.0 3 195453152.0 2 2956 EVALUABLE BAM_AMBIGUOUS
659_csY MSMO1 BAHCC1 chr4 165329536 chr17 81442831 BND CALL_659_csY_5 FP call 0.0001 0 0 12 0 hg19 4.0 166250688.0 17 79409857.0 0 0 UNEVALUABLE UNEVALUABLE
659_csY intergenic(HLA-G,HLA-A) HLA-A chr6 29893282 chr6 29948202 DEL CALL_659_csY_6 FP call 0.838 0 0 2 0 hg19 6.0 29861059.0 6 29915979.0 0 0 UNEVALUABLE UNEVALUABLE
659_csY intergenic(SH2B2,SPDYE6) PRKRIP1 chr7 102327180 chr7 102380486 DUP CALL_659_csY_7 FP call 0.001 0 0 1377 1569 hg19 7.0 101967598.0 7 102020933.0 0 1377 EVALUABLE BAM_REFUTED
659_csY KDM4C ST6GALNAC1 chr9 6929997 chr17 76629525 BND CALL_659_csY_8 TP call 0.9013 0 0 0 2384 hg19 9.0 6929997.0 17 74625607.0 0 0 UNEVALUABLE UNEVALUABLE
659_csY intergenic(KDM4C,DMAC1) ST6GALNAC1 chr9 7486730 chr17 76629597 BND CALL_659_csY_9 TP call 0.9748 0 0 0 2238 hg19 9.0 7486730.0 17 74625679.0 0 0 UNEVALUABLE UNEVALUABLE
659_csY MACROH2A2 HLA-DRB1 chr10 70083445 chr6 32581577 BND CALL_659_csY_10 FP call 0.0033 0 0 0 1342 hg19 10.0 71843201.0 6 32549354.0 0 0 UNEVALUABLE UNEVALUABLE
659_csY MUC6 intergenic(.,.) chr11 1017497 chrUn_JTFH01000899v1_decoy 484 BND CALL_659_csY_11 FP call 0.0356 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_csY KRTAP5-4 intergenic(.,.) chr11 1622017 chr11_KI270903v1_alt 106612 BND CALL_659_csY_12 FP call 0.0 5 1 6094 4997 hg19 11.0 1643247.0 11 1651106.0 6 4997 EVALUABLE BAM_CONFIRMED
659_csY intergenic(OR8U3,ENSG00000284732) ENSG00000284732 chr11 56449005 chr11 56470289 BND CALL_659_csY_13 FP call 0.0536 1 0 1126 1147 hg19 11.0 56216481.0 11 56237765.0 1 1126 EVALUABLE BAM_AMBIGUOUS
659_csY ACTN3 intergenic(PPP6R3,GAL) chr11 66546701 chr11 68669811 DEL CALL_659_csY_14 FP call 0.9982 0 0 1835 0 hg19 11.0 66314172.0 11 68437279.0 0 0 UNEVALUABLE UNEVALUABLE
659_csY ARAP1 WASH6P chr11 72781055 chrX 156025303 BND CALL_659_csY_15 TP call 0.0006 0 0 585 1410 hg19 11.0 72492100.0 X 155254968.0 0 585 EVALUABLE BAM_REFUTED
659_csY INTS4 DLG2 chr11 77956035 chr11 84432360 DEL CALL_659_csY_16 FP call 0.8683 0 0 474 0 hg19 11.0 77667081.0 11 84143403.0 0 0 UNEVALUABLE UNEVALUABLE
659_csY intergenic(TENM4,FAM181B) NAALAD2 chr11 80947132 chr11 90163344 DUP CALL_659_csY_17 TP call 0.9822 0 0 0 1176 hg19 11.0 80658175.0 11 89896512.0 0 0 UNEVALUABLE UNEVALUABLE
659_csY OR8G2P intergenic(OR8G2P,OR8G1) chr11 124224814 chr11 124238548 DUP CALL_659_csY_18 FP call 0.6854 0 1 2361 216 hg19 11.0 124095519.0 11 124109249.0 1 216 EVALUABLE BAM_AMBIGUOUS
659_csY GCOM1 intergenic(TSPAN3,PEAK1) chr15 57714638 chr15 77095840 DEL CALL_659_csY_19 TP call 0.1988 0 0 925 0 hg19 15.0 58006836.0 15 77388182.0 0 0 UNEVALUABLE UNEVALUABLE
659_csY intergenic(CA10,KIF2B) BRIP1 chr17 52903129 chr17 61847138 BND CALL_659_csY_20 TP call 0.5557 0 0 1 1411 hg19 17.0 50980489.0 17 59924499.0 0 1 UNEVALUABLE UNEVALUABLE
659_csY intergenic(STXBP4,HLF) SPATC1L chr17 55247150 chr21 46161561 BND CALL_659_csY_21 FP call 0.1815 0 0 1 1960 hg19 17.0 53324511.0 21 47581475.0 0 1 UNEVALUABLE UNEVALUABLE
659_csY SMIM36 TMEM94 chr17 55508902 chr17 75488874 DUP CALL_659_csY_22 FP call 0.8344 0 0 6 1087 hg19 17.0 53586263.0 17 73484955.0 0 6 UNEVALUABLE UNEVALUABLE
659_csY GDPD1 CLTC chr17 59221976 chr17 59681440 DEL CALL_659_csY_23 TP call 0.002 0 0 5 1481 hg19 17.0 57299337.0 17 57758801.0 0 5 UNEVALUABLE UNEVALUABLE
659_csY HEATR6 CHCT1 chr17 60050948 chr17 60420370 DEL CALL_659_csY_24 TP call 0.9251 0 0 541 19 hg19 17.0 58128309.0 17 58497731.0 0 19 UNEVALUABLE UNEVALUABLE
659_csY BCAS3 TBX2 chr17 61026440 chr17 61403081 DEL CALL_659_csY_25 TP call 0.9904 0 0 328 1036 hg19 17.0 59103801.0 17 59480442.0 0 328 EVALUABLE BAM_REFUTED
659_csY GH2 GH1 chr17 63880643 chr17 63917411 DUP CALL_659_csY_26 FP call 0.0001 0 0 4367 3866 hg19 17.0 61958003.0 17 61994771.0 0 3866 EVALUABLE BAM_REFUTED
659_csY CASKIN2 TMEM94 chr17 75501146 chr17 75488730 BND CALL_659_csY_27 TP_DUP call 0.7703 0 0 1198 871 hg19 17.0 73497227.0 17 73484811.0 0 871 EVALUABLE BAM_REFUTED
659_csY KIR3DL1 KIR2DS4 chr19 54829414 chr19 54847115 DEL CALL_659_csY_28 FP call 0.0376 0 0 1026 3 hg19 19.0 55340869.0 19 55358570.0 0 3 UNEVALUABLE UNEVALUABLE
659_csY intergenic(GGT5,SPECC1L) BCR chr22 24259564 chr22 23315875 BND CALL_659_csY_29 FP call 0.0 0 0 295 755 hg19 22.0 24655532.0 22 23658062.0 0 295 EVALUABLE BAM_REFUTED
659_csY RRP7A intergenic(SERHL2,POLDIP3) chr22 42514292 chr22 42576009 DEL CALL_659_csY_30 FP call 0.0058 1 0 1308 584 hg19 22.0 42910298.0 22 42972015.0 1 584 EVALUABLE BAM_AMBIGUOUS
659_csY intergenic(.,.) HLA-DPB1 chr6_GL000251v2_alt 4498497 chr6 33086640 BND CALL_659_csY_31 FP call 0.001 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_csY intergenic(.,.) HLA-DRB5 chr6_GL000253v2_alt 3855270 chr6 32530170 BND CALL_659_csY_32 FP call 0.0 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_csY intergenic(.,.) HLA-DRB1 chr6_GL000253v2_alt 3855448 chr6 32589830 BND CALL_659_csY_33 FP call 0.0029 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_csY intergenic(.,.) HLA-DQB1 chr6_GL000253v2_alt 4076963 chr6 32659512 BND CALL_659_csY_34 FP call 0.0183 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_csY intergenic(.,.) BOD1 chrUn_KN707729v1_decoy 1 chr5 173609255 BND CALL_659_csY_35 FP call 0.9757 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_csY intergenic(.,.) TG chrUn_JTFH01000445v1_decoy 1 chr8 132908279 BND CALL_659_csY_36 FP call 0.0033 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_csY intergenic(.,.) HLA-A chrUn_JTFH01001288v1_decoy 409 chr6 29948774 BND CALL_659_csY_37 FP call 0.0 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_csY KDM4C ST6GALNAC1 chr9 6929996 chr17 76629524 TRANSLOCATION TRUTH_659_csY_38 TRUTH truth 41.0 0 0 0 2384 hg19 9.0 6929996.0 17 74625606.0 0 0 UNEVALUABLE UNEVALUABLE
659_csY intergenic(KDM4C,DMAC1) ST6GALNAC1 chr9 7486729 chr17 76629596 TRANSLOCATION TRUTH_659_csY_39 TRUTH truth 71.0 0 0 0 2241 hg19 9.0 7486729.0 17 74625678.0 0 0 UNEVALUABLE UNEVALUABLE
659_csY STARD10 WASH6P chr11 72781054 chrX 156025302 TRANSLOCATION TRUTH_659_csY_40 TRUTH truth 39.0 0 0 585 1410 hg19 11.0 72492099.0 X 155254967.0 0 585 EVALUABLE BAM_REFUTED
659_csY intergenic(TENM4,FAM181B) NAALAD2 chr11 80947131 chr11 90163343 DUPLICATION TRUTH_659_csY_41 TRUTH truth 532.0 0 0 0 1176 hg19 11.0 80658174.0 11 89896511.0 0 0 UNEVALUABLE UNEVALUABLE
659_csY POLR2M intergenic(TSPAN3,PEAK1) chr15 57714637 chr15 77095839 DELETION TRUTH_659_csY_42 TRUTH truth 64.0 0 0 925 0 hg19 15.0 58006835.0 15 77388181.0 0 0 UNEVALUABLE UNEVALUABLE
659_csY intergenic(CA10,KIF2B) BRIP1 chr17 52903127 chr17 61847136 INVERSION TRUTH_659_csY_43 TRUTH truth 191.0 0 0 1 1411 hg19 17.0 50980487.0 17 59924497.0 0 1 UNEVALUABLE UNEVALUABLE
659_csY GDPD1 CLTC chr17 59221975 chr17 59681439 DELETION TRUTH_659_csY_44 TRUTH truth 67.0 0 0 5 1481 hg19 17.0 57299336.0 17 57758800.0 0 5 UNEVALUABLE UNEVALUABLE
659_csY HEATR6 USP32 chr17 60050947 chr17 60420369 DELETION TRUTH_659_csY_45 TRUTH truth 37.0 0 0 541 19 hg19 17.0 58128308.0 17 58497730.0 0 19 UNEVALUABLE UNEVALUABLE
659_csY BCAS3 TBX2 chr17 61026439 chr17 61403080 DELETION TRUTH_659_csY_46 TRUTH truth 257.0 0 0 328 1036 hg19 17.0 59103800.0 17 59480441.0 0 328 EVALUABLE BAM_REFUTED
659_csY TMEM94 CASKIN2 chr17 75488727 chr17 75501145 INVERSION TRUTH_659_csY_47 TRUTH truth 31.0 0 0 869 1196 hg19 17.0 73484808.0 17 73497226.0 0 869 EVALUABLE BAM_REFUTED
659_cst ATP1A4 intergenic(IDO2,TCIM) chr1 160167285 chr8 40059175 BND CALL_659_cst_0 FP call 0.0037 0 0 1068 7 hg19 1 160137075.0 8 39916694.0 0 7 UNEVALUABLE UNEVALUABLE
659_cst ASTN1 SEC16B chr1 176989294 chr1 177964242 DEL CALL_659_cst_1 FP call 0.9968 0 0 0 331 hg19 1 176958430.0 1 177933377.0 0 0 UNEVALUABLE UNEVALUABLE
659_cst MFSD6 CEP89 chr2 190413849 chr19 32901297 BND CALL_659_cst_2 FP call 0.6751 0 0 1 531 hg19 2 191278575.0 19 33392203.0 0 1 UNEVALUABLE UNEVALUABLE
659_cst INO80D FGFR2 chr2 206067898 chr10 121596939 BND CALL_659_cst_3 FP call 0.0 0 0 2 9382 hg19 2 206932622.0 10 123356453.0 0 2 UNEVALUABLE UNEVALUABLE
659_cst CREB1 SUMF1 chr2 207600103 chr3 4313714 BND CALL_659_cst_4 FP call 0.9726 0 0 2 1314 hg19 2 208464827.0 3 4355398.0 0 2 UNEVALUABLE UNEVALUABLE
659_cst intergenic(PTH2R,MAP2) EPG5 chr2 209238274 chr18 45930767 BND CALL_659_cst_5 FP call 0.9929 0 0 0 397 hg19 2 210102998.0 18 43510733.0 0 0 UNEVALUABLE UNEVALUABLE
659_cst RAF1 ROBO2 chr3 12602648 chr3 76960378 DEL CALL_659_cst_6 TP call 0.0202 0 0 5971 0 hg19 3 12644147.0 3 77009529.0 0 0 UNEVALUABLE UNEVALUABLE
659_cst intergenic(GBE1,CADM2) NABP1 chr3 83501780 chr2 191679058 BND CALL_659_cst_7 FP call 0.0114 0 0 2 1026 hg19 3 83550931.0 2 192543784.0 0 2 UNEVALUABLE UNEVALUABLE
659_cst intergenic(SLC7A11,NOCT) SNPH chr4 138672386 chr20 1305001 BND CALL_659_cst_8 FP call 0.25 0 0 1 2017 hg19 4 139593540.0 20 1285645.0 0 1 UNEVALUABLE UNEVALUABLE
659_cst PCDH15 GRIPAP1 chr10 55463048 chrX 48997292 BND CALL_659_cst_9 FP call 0.9013 0 0 0 158 hg19 10 57222808.0 X 48853704.0 0 0 UNEVALUABLE UNEVALUABLE
659_cst LRRC20 TP53I13 chr10 70317914 chr17 29566879 BND CALL_659_cst_10 TP call 0.0481 0 0 0 1861 hg19 10 72077670.0 17 27893897.0 0 0 UNEVALUABLE UNEVALUABLE
659_cst intergenic(RAB11FIP2,FAM204A) FGFR2 chr10 118269876 chr10 121595412 BND CALL_659_cst_11 FP call 0.0003 0 0 1 8671 hg19 10 120029388.0 10 123354926.0 0 1 UNEVALUABLE UNEVALUABLE
659_cst intergenic(SEC23IP,PLPP4) HLA-DQA1 chr10 119972972 chr6 32642165 BND CALL_659_cst_12 FP call 0.0 0 0 1 1111 hg19 10 121732484.0 6 32609942.0 0 1 UNEVALUABLE UNEVALUABLE
659_cst intergenic(METTL15,KCNA4) ARHGEF17 chr11 29421468 chr11 73367631 DUP CALL_659_cst_13 FP call 0.0077 0 0 0 896 hg19 11 29443015.0 11 73078676.0 0 0 UNEVALUABLE UNEVALUABLE
659_cst C2CD3 CPAMD8 chr11 74123530 chr19 16893156 BND CALL_659_cst_14 FP call 0.0079 0 0 286 330 hg19 11 73834575.0 19 17003967.0 0 286 EVALUABLE BAM_REFUTED
659_cst PGM2L1 MYO7A chr11 74397918 chr11 77184615 DUP CALL_659_cst_15 FP call 0.0114 0 0 418 681 hg19 11 74108963.0 11 76895660.0 0 418 EVALUABLE BAM_REFUTED
659_cst DLG2 CA4 chr11 84185156 chr17 60150051 BND CALL_659_cst_16 TP call 0.9745 0 0 0 272 hg19 11 83896199.0 17 58227412.0 0 0 UNEVALUABLE UNEVALUABLE
659_cst intergenic(SYTL2,CCDC83) CPXM2 chr11 85814299 chr10 123757294 BND CALL_659_cst_17 FP call 0.9916 0 0 1 398 hg19 11 85525342.0 10 125516810.0 0 1 UNEVALUABLE UNEVALUABLE
659_cst intergenic(CHORDC1,FAT3) UVRAG chr11 91265711 chr11 75861778 BND CALL_659_cst_18 FP call 0.2718 0 0 0 229 hg19 11 90998879.0 11 75572823.0 0 0 UNEVALUABLE UNEVALUABLE
659_cst DHRS4 DHRS4L2 chr14 23959909 chr14 23995011 DUP CALL_659_cst_19 FP call 0.0031 0 0 663 632 hg19 14 24429118.0 14 24464220.0 0 632 EVALUABLE BAM_REFUTED
659_cst intergenic(MDGA2,RPS29) ADGRA2 chr14 49366731 chr8 37834004 BND CALL_659_cst_20 TP_DUP call 0.4657 0 0 5 3522 hg19 14 49833449.0 8 37691522.0 0 5 UNEVALUABLE UNEVALUABLE
659_cst intergenic(FSIP1,GPR176) DMXL2 chr15 39784929 chr15 51488055 DEL CALL_659_cst_21 TP call 0.9312 0 0 0 756 hg19 15 40077130.0 15 51780252.0 0 0 UNEVALUABLE UNEVALUABLE
659_cst intergenic(FOXB1,ANXA2) PGM2L1 chr15 60062214 chr11 74347153 BND CALL_659_cst_22 FP call 0.6972 0 0 0 808 hg19 15 60354413.0 11 74058198.0 0 0 UNEVALUABLE UNEVALUABLE
659_cst TLN2 LMAN1L chr15 62454271 chr15 74823657 DUP CALL_659_cst_23 FP call 0.3054 0 0 0 520 hg19 15 62746470.0 15 75115998.0 0 0 UNEVALUABLE UNEVALUABLE
659_cst PIF1 SKOR1 chr15 64824880 chr15 67830215 DEL CALL_659_cst_24 TP call 0.5668 0 0 87 381 hg19 15 65117079.0 15 68122553.0 0 87 EVALUABLE BAM_REFUTED
659_cst intergenic(HOXB7,PRAC1) FGF14 chr17 48705414 chr13 101711075 BND CALL_659_cst_25 FP call 0.1826 0 0 0 0 hg19 17 46782776.0 13 102363425.0 0 0 UNEVALUABLE UNEVALUABLE
659_cst SPAG9 SMARCA4 chr17 51046512 chr19 11029241 BND CALL_659_cst_26 TP call 0.9816 0 0 1044 1 hg19 17 49123873.0 19 11139917.0 0 1 UNEVALUABLE UNEVALUABLE
659_cst intergenic(YPEL2,DHX40) TRAIP chr17 59521465 chr3 49856398 BND CALL_659_cst_27 FP call 0.912 0 0 0 307 hg19 17 57598826.0 3 49893831.0 0 0 UNEVALUABLE UNEVALUABLE
659_cst NACA2 HELZ chr17 61591034 chr17 67129409 DEL CALL_659_cst_28 TP call 0.9465 0 0 2235 33 hg19 17 59668395.0 17 65125525.0 0 33 EVALUABLE BAM_REFUTED
659_cst BRIP1 CEP89 chr17 61863509 chr19 32876510 BND CALL_659_cst_29 FP call 0.0047 0 0 0 2 hg19 17 59940870.0 19 33367416.0 0 0 UNEVALUABLE UNEVALUABLE
659_cst TANC2 RB1 chr17 63201737 chr13 48480839 BND CALL_659_cst_30 FP call 0.0 0 0 0 3 hg19 17 61279098.0 13 49054975.0 0 0 UNEVALUABLE UNEVALUABLE
659_cst ERN1 SDK2 chr17 64068255 chr17 73613722 DUP CALL_659_cst_31 FP call 0.0358 0 0 414 1 hg19 17 62145615.0 17 71609861.0 0 1 UNEVALUABLE UNEVALUABLE
659_cst intergenic(SOX9,SLC39A11) PPARG chr17 72295323 chr3 12376931 BND CALL_659_cst_32 FP call 0.035 0 0 1 1 hg19 17 70291464.0 3 12418430.0 0 1 UNEVALUABLE UNEVALUABLE
659_cst intergenic(SLC39A11,SSTR2) RAF1 chr17 73155264 chr3 12605825 BND CALL_659_cst_33 TP_DUP call 0.9889 0 0 13 6036 hg19 17 71151403.0 3 12647324.0 0 13 UNEVALUABLE UNEVALUABLE
659_cst GPR142 GRB2 chr17 74372392 chr17 75342871 DEL CALL_659_cst_34 FP call 0.9791 0 0 2248 0 hg19 17 72368531.0 17 73338952.0 0 0 UNEVALUABLE UNEVALUABLE
659_cst TRIM65 EXOC7 chr17 75890904 chr17 76089702 DUP CALL_659_cst_35 TP call 0.9607 0 0 1828 641 hg19 17 73886985.0 17 74085783.0 0 641 EVALUABLE BAM_REFUTED
659_cst INSR MYL4 chr19 7114459 chr17 47218907 BND CALL_659_cst_36 FP call 0.9676 0 0 0 3 hg19 19 7114470.0 17 45296273.0 0 0 UNEVALUABLE UNEVALUABLE
659_cst PNPLA6 FBN3 chr19 7554936 chr19 8128149 BND CALL_659_cst_37 TP call 0.9943 0 0 1415 2 hg19 19 7619822.0 19 8193033.0 0 2 UNEVALUABLE UNEVALUABLE
659_cst DNASE2 PRCD chr19 12878566 chr17 76541000 BND CALL_659_cst_38 TP_DUP call 0.9163 0 0 1616 336 hg19 19 12989380.0 17 74537082.0 0 336 EVALUABLE BAM_REFUTED
659_cst ADGRE2 ADGRE5 chr19 14766291 chr19 14397749 BND CALL_659_cst_39 FP call 0.0 0 0 962 1210 hg19 19 14877103.0 19 14508561.0 0 962 EVALUABLE BAM_REFUTED
659_cst ZNF676 SLCO2B1 chr19 22199485 chr11 75204536 BND CALL_659_cst_40 TP_DUP call 0.9995 0 0 5 639 hg19 19 22382287.0 11 74915581.0 0 5 UNEVALUABLE UNEVALUABLE
659_cst intergenic(ZNF254,UQCRFS1) PIKFYVE chr19 28346125 chr2 208325592 BND CALL_659_cst_41 FP call 0.0315 0 0 0 2358 hg19 19 28837032.0 2 209190316.0 0 0 UNEVALUABLE UNEVALUABLE
659_cst SNPH intergenic(TGM3,TGM6) chr20 1305009 chr20 2366012 DUP CALL_659_cst_42 FP call 0.3366 0 0 2035 0 hg19 20 1285653.0 20 2346658.0 0 0 UNEVALUABLE UNEVALUABLE
659_cst SON intergenic(PITPNC1,NOL11) chr21 33550531 chr17 67717623 BND CALL_659_cst_43 TP_DUP call 0.9854 0 0 2823 604 hg19 21 34922837.0 17 65713739.0 0 604 EVALUABLE BAM_REFUTED
659_cst intergenic(FAM133A,DIAPH2) HLA-DQA1 chrX 94552413 chr6 32642230 BND CALL_659_cst_44 FP call 0.0 0 0 0 1230 hg19 X 93807412.0 6 32610007.0 0 0 UNEVALUABLE UNEVALUABLE
659_cst GBP2 GBP4 chr1 89133433 chr1 89186466 DELETION TRUTH_659_cst_45 TRUTH truth 36.0 8 1 508 601 hg19 1 89599116.0 1 89652149.0 9 508 EVALUABLE BAM_CONFIRMED
659_cst RAF1 ROBO2 chr3 12602647 chr3 76960377 DELETION TRUTH_659_cst_46 TRUTH truth 66.0 0 0 5951 0 hg19 3 12644146.0 3 77009528.0 0 0 UNEVALUABLE UNEVALUABLE
659_cst RAF1 intergenic(SLC39A11,SSTR2) chr3 12605823 chr17 73155263 TRANSLOCATION TRUTH_659_cst_47 TRUTH truth 137.0 0 0 6031 13 hg19 3 12647322.0 17 71151402.0 0 13 UNEVALUABLE UNEVALUABLE
659_cst ADGRA2 intergenic(MDGA2,RPS29) chr8 37834003 chr14 49366730 TRANSLOCATION TRUTH_659_cst_48 TRUTH truth 33.0 0 0 3522 5 hg19 8 37691521.0 14 49833448.0 0 5 UNEVALUABLE UNEVALUABLE
659_cst LRRC20 TP53I13 chr10 70317913 chr17 29566878 TRANSLOCATION TRUTH_659_cst_49 TRUTH truth 35.0 0 0 0 1862 hg19 10 72077669.0 17 27893896.0 0 0 UNEVALUABLE UNEVALUABLE
659_cst CLPB ENSG00000258674 chr11 72406945 chr19 19528971 TRANSLOCATION TRUTH_659_cst_50 TRUTH truth 44.0 0 0 0 2124 hg19 11 72117989.0 19 19639780.0 0 0 UNEVALUABLE UNEVALUABLE
659_cst SLCO2B1 ZNF676 chr11 75204535 chr19 22199484 TRANSLOCATION TRUTH_659_cst_51 TRUTH truth 107.0 0 0 639 5 hg19 11 74915580.0 19 22382286.0 0 5 UNEVALUABLE UNEVALUABLE
659_cst intergenic(B3GNT6,CAPN5) MAST3 chr11 77046434 chr19 18145854 TRANSLOCATION TRUTH_659_cst_52 TRUTH truth 59.0 0 0 0 639 hg19 11 76757481.0 19 18256664.0 0 0 UNEVALUABLE UNEVALUABLE
659_cst DLG2 CA4 chr11 84185155 chr17 60150049 TRANSLOCATION TRUTH_659_cst_53 TRUTH truth 41.0 0 0 0 272 hg19 11 83896198.0 17 58227410.0 0 0 UNEVALUABLE UNEVALUABLE
659_cst intergenic(FSIP1,GPR176) DMXL2 chr15 39784928 chr15 51488054 DELETION TRUTH_659_cst_54 TRUTH truth 54.0 0 0 0 752 hg19 15 40077129.0 15 51780251.0 0 0 UNEVALUABLE UNEVALUABLE
659_cst PIF1 SKOR1 chr15 64824879 chr15 67830214 DELETION TRUTH_659_cst_55 TRUTH truth 40.0 0 0 88 380 hg19 15 65117078.0 15 68122552.0 0 88 EVALUABLE BAM_REFUTED
659_cst SPAG9 SMARCA4 chr17 51046511 chr19 11029238 TRANSLOCATION TRUTH_659_cst_56 TRUTH truth 43.0 0 0 1044 1 hg19 17 49123872.0 19 11139914.0 0 1 UNEVALUABLE UNEVALUABLE
659_cst NACA2 HELZ chr17 61591033 chr17 67129408 DELETION TRUTH_659_cst_57 TRUTH truth 45.0 0 0 2235 35 hg19 17 59668394.0 17 65125524.0 0 35 EVALUABLE BAM_REFUTED
659_cst intergenic(PITPNC1,NOL11) SON chr17 67717622 chr21 33550530 TRANSLOCATION TRUTH_659_cst_58 TRUTH truth 86.0 0 0 604 2819 hg19 17 65713738.0 21 34922836.0 0 604 EVALUABLE BAM_REFUTED
659_cst TRIM65 EXOC7 chr17 75890903 chr17 76089701 DUPLICATION TRUTH_659_cst_59 TRUTH truth 120.0 0 0 1828 643 hg19 17 73886984.0 17 74085782.0 0 643 EVALUABLE BAM_REFUTED
659_cst PRCD DNASE2 chr17 76540997 chr19 12878565 TRANSLOCATION TRUTH_659_cst_60 TRUTH truth 48.0 0 0 337 1616 hg19 17 74537079.0 19 12989379.0 0 337 EVALUABLE BAM_REFUTED
659_cst PNPLA6 FBN3 chr19 7554935 chr19 8128148 INVERSION TRUTH_659_cst_61 TRUTH truth 204.0 0 0 1415 2 hg19 19 7619821.0 19 8193032.0 0 2 UNEVALUABLE UNEVALUABLE
659_d01 GALNT14 ALK chr2 31076886 chr2 29223803 BND CALL_659_d01_0 FP call 0.0 0 0 0 9063 hg19 2 31299752.0 2 29446669.0 0 0 UNEVALUABLE UNEVALUABLE
659_d01 EML4 ALK chr2 42253666 chr2 29223736 BND CALL_659_d01_1 FP call 0.9124 0 0 0 9261 hg19 2 42480806.0 2 29446602.0 0 0 UNEVALUABLE UNEVALUABLE
659_d01 ZBBX PDCD4 chr3 167394795 chr10 110889535 BND CALL_659_d01_2 FP call 0.0016 0 0 0 134 hg19 3 167112583.0 10 112649293.0 0 0 UNEVALUABLE UNEVALUABLE
659_d01 PDLIM3 POLE chr4 185528518 chr12 132641798 BND CALL_659_d01_3 TP call 0.702 0 0 0 3775 hg19 4 186449672.0 12 133218384.0 0 0 UNEVALUABLE UNEVALUABLE
659_d01 ABCA1 ETV4 chr9 104794287 chr17 43532621 BND CALL_659_d01_4 FP call 0.0002 0 0 645 6869 hg19 9 107556568.0 17 41609989.0 0 645 EVALUABLE BAM_REFUTED
659_d01 FOXA1 intergenic(HEY1,MRPS28) chr14 37594977 chr8 79803481 BND CALL_659_d01_5 FP call 0.0 0 0 1093 1 hg19 14 38064182.0 8 80715716.0 0 1 UNEVALUABLE UNEVALUABLE
659_d01 TYRO3 SHC4 chr15 41580719 chr15 48878549 BND CALL_659_d01_6 FP call 0.001 0 0 3 2742 hg19 15 41872917.0 15 49170746.0 0 3 UNEVALUABLE UNEVALUABLE
659_d01 TUBGCP4 EPS8 chr15 43405587 chr12 15873206 BND CALL_659_d01_7 FP call 0.0 0 0 730 4 hg19 15 43697785.0 12 16026140.0 0 4 UNEVALUABLE UNEVALUABLE
659_d01 SIN3A AP3B1 chr15 75370835 chr5 78240755 BND CALL_659_d01_8 FP call 0.0 0 0 1 251 hg19 15 75663176.0 5 77536579.0 0 1 UNEVALUABLE UNEVALUABLE
659_d01 PDLIM3 POLE chr4 185528517 chr12 132641792 TRANSLOCATION TRUTH_659_d01_9 TRUTH truth 40.0 0 0 0 3695 hg19 4 186449671.0 12 133218378.0 0 0 UNEVALUABLE UNEVALUABLE
659_d13 intergenic(FAM131C,EPHA2) EPHA2 chr1 16100757 chr1 16133294 DUP CALL_659_d13_0 TP call 0.9949 0 0 21 2253 hg19 1 16427252.0 1 16459789.0 0 21 EVALUABLE BAM_REFUTED
659_d13 C1orf216 intergenic(CYTH3,SAGSIN1) chr1 35716283 chr7 6325341 BND CALL_659_d13_1 FP call 0.0 0 0 2018 4 hg19 1 36181884.0 7 6364972.0 0 4 UNEVALUABLE UNEVALUABLE
659_d13 ASNSD1 SPDYE18 chr2 189670506 chr7 77050812 BND CALL_659_d13_2 FP call 0.5192 0 0 688 0 hg19 2 190535232.0 7 76680129.0 0 0 UNEVALUABLE UNEVALUABLE
659_d13 intergenic(ANKRD55,MAP3K1) ENSG00000263809 chr5 56504863 chr17 8377672 BND CALL_659_d13_3 FP call 0.4935 0 0 574 398 hg19 5 55800690.0 17 8280990.0 0 398 EVALUABLE BAM_REFUTED
659_d13 intergenic(HLA-DPB1,COL11A2) COL11A2 chr6 33162045 chr6 33168566 DUP CALL_659_d13_4 TP call 0.9967 0 0 2 1175 hg19 6 33129822.0 6 33136343.0 0 2 UNEVALUABLE UNEVALUABLE
659_d13 intergenic(PTCHD4,MMUT) IFNGR1 chr6 48762390 chr6 137204422 DEL CALL_659_d13_5 FP call 0.0 0 0 0 392 hg19 6 48730027.0 6 137525559.0 0 0 UNEVALUABLE UNEVALUABLE
659_d13 KIF13B WSB2 chr8 29176492 chr12 118034269 BND CALL_659_d13_6 TP call 0.9526 0 0 202 739 hg19 8 29034009.0 12 118472074.0 0 202 EVALUABLE BAM_REFUTED
659_d13 EXT1 RYR1 chr8 118110241 chr19 38472904 BND CALL_659_d13_7 TP call 0.9896 0 0 1995 435 hg19 8 119122480.0 19 38963544.0 0 435 EVALUABLE BAM_REFUTED
659_d13 intergenic(ANKRD18B,PRSS3) BRCA1 chr9 33714292 chr17 43125131 BND CALL_659_d13_8 TP call 0.0606 0 0 0 6432 hg19 9 33714290.0 17 41277148.0 0 0 UNEVALUABLE UNEVALUABLE
659_d13 F2 CKAP5 chr11 46726790 chr11 46766281 DUP CALL_659_d13_9 TP call 0.0006 0 0 1600 3 hg19 11 46748340.0 11 46787831.0 0 3 UNEVALUABLE UNEVALUABLE
659_d13 intergenic(PXN,SIRT4) NME2 chr12 120282383 chr17 51166955 BND CALL_659_d13_10 TP call 0.965 0 0 1264 1293 hg19 12 120720186.0 17 49244316.0 0 1264 EVALUABLE BAM_REFUTED
659_d13 intergenic(WWOX,MAF) ZNF823 chr16 79344697 chr19 11721996 BND CALL_659_d13_11 FP call 0.0007 0 0 3 2501 hg19 16 79378594.0 19 11832811.0 0 3 UNEVALUABLE UNEVALUABLE
659_d13 DNAH9 OCA2 chr17 11694425 chr15 27914053 BND CALL_659_d13_12 FP call 0.0 0 0 833 0 hg19 17 11597742.0 15 28159199.0 0 0 UNEVALUABLE UNEVALUABLE
659_d13 UBXN6 intergenic(UBXN6,HDGFL2) chr19 4446295 chr19 4472276 DUP CALL_659_d13_13 TP call 0.9944 0 0 3261 344 hg19 19 4446292.0 19 4472273.0 0 344 EVALUABLE BAM_REFUTED
659_d13 EMC10 BRSK2 chr19 50483342 chr11 1436050 BND CALL_659_d13_14 TP_DUP call 0.998 0 0 4 310 hg19 19 50986599.0 11 1457280.0 0 4 UNEVALUABLE UNEVALUABLE
659_d13 SHISA7 intergenic(SHISA7,ISOC2) chr19 55437740 chr19 55444438 DUP CALL_659_d13_15 FP call 0.0066 0 0 1028 1 hg19 19 55949107.0 19 55955805.0 0 1 UNEVALUABLE UNEVALUABLE
659_d13 intergenic(FAM131C,EPHA2) EPHA2 chr1 16100756 chr1 16133293 DUPLICATION TRUTH_659_d13_16 TRUTH truth 39.0 0 0 21 2249 hg19 1 16427251.0 1 16459788.0 0 21 EVALUABLE BAM_REFUTED
659_d13 intergenic(HLA-DPB1,COL11A2) COL11A2 chr6 33162044 chr6 33168565 DUPLICATION TRUTH_659_d13_17 TRUTH truth 31.0 0 0 2 1175 hg19 6 33129821.0 6 33136342.0 0 2 UNEVALUABLE UNEVALUABLE
659_d13 KIF13B WSB2 chr8 29176491 chr12 118034266 TRANSLOCATION TRUTH_659_d13_18 TRUTH truth 31.0 0 0 202 739 hg19 8 29034008.0 12 118472071.0 0 202 EVALUABLE BAM_REFUTED
659_d13 EXT1 RYR1 chr8 118110240 chr19 38472903 TRANSLOCATION TRUTH_659_d13_19 TRUTH truth 24.0 0 0 1992 434 hg19 8 119122479.0 19 38963543.0 0 434 EVALUABLE BAM_REFUTED
659_d13 intergenic(ANKRD18B,PRSS3) BRCA1 chr9 33714291 chr17 43125129 TRANSLOCATION TRUTH_659_d13_20 TRUTH truth 160.0 0 0 0 6505 hg19 9 33714289.0 17 41277146.0 0 0 UNEVALUABLE UNEVALUABLE
659_d13 BRSK2 EMC10 chr11 1436048 chr19 50483341 TRANSLOCATION TRUTH_659_d13_21 TRUTH truth 68.0 0 0 310 4 hg19 11 1457278.0 19 50986598.0 0 4 UNEVALUABLE UNEVALUABLE
659_d13 F2 CKAP5 chr11 46726789 chr11 46766280 DUPLICATION TRUTH_659_d13_22 TRUTH truth 90.0 0 0 1601 3 hg19 11 46748339.0 11 46787830.0 0 3 UNEVALUABLE UNEVALUABLE
659_d13 intergenic(PXN,SIRT4) NME1-NME2 chr12 120282382 chr17 51166954 TRANSLOCATION TRUTH_659_d13_23 TRUTH truth 28.0 0 0 1264 1293 hg19 12 120720185.0 17 49244315.0 0 1264 EVALUABLE BAM_REFUTED
659_d13 UBXN6 intergenic(UBXN6,HDGFL2) chr19 4446294 chr19 4472275 DUPLICATION TRUTH_659_d13_24 TRUTH truth 158.0 0 0 3257 344 hg19 19 4446291.0 19 4472272.0 0 344 EVALUABLE BAM_REFUTED
659_dMH CCDC148 TTN chr2 158209454 chr2 178782821 BND CALL_659_dMH_0 TP call 0.065 0 0 2 1884 hg19 2 159065966.0 2 179647548.0 0 2 UNEVALUABLE UNEVALUABLE
659_dMH MECOM HIPK3 chr3 169593660 chr11 33347962 BND CALL_659_dMH_1 TP call 0.9911 0 0 7 1360 hg19 3 169311448.0 11 33369508.0 0 7 UNEVALUABLE UNEVALUABLE
659_dMH intergenic(NAALADL2,TBL1XR1) KCNMB3 chr3 175937538 chr3 179238697 DUP CALL_659_dMH_2 FP call 0.0317 0 0 0 0 hg19 3 175655326.0 3 178956485.0 0 0 UNEVALUABLE UNEVALUABLE
659_dMH intergenic(SOX2,ATP11B) ST6GAL1 chr3 182512113 chr3 187072927 BND CALL_659_dMH_3 TP call 0.9932 0 0 0 264 hg19 3 182229901.0 3 186790715.0 0 0 UNEVALUABLE UNEVALUABLE
659_dMH HLA-G HLA-B chr6 29828862 chr6 31356207 BND CALL_659_dMH_4 FP call 0.0 0 0 1825 8483 hg19 6 29796639.0 6 31323984.0 0 1825 EVALUABLE BAM_REFUTED
659_dMH intergenic(HLA-G,HLA-A) HLA-A chr6 29930032 chr6 29945889 DEL CALL_659_dMH_5 FP call 0.0 0 0 252 5004 hg19 6 29897809.0 6 29913666.0 0 252 EVALUABLE BAM_REFUTED
659_dMH RBAK-RBAKDN USP42 chr7 5064231 chr7 6105506 DUP CALL_659_dMH_6 FP call 0.6676 0 0 2413 2 hg19 7 5103862.0 7 6145137.0 0 2 UNEVALUABLE UNEVALUABLE
659_dMH JAZF1 RARA chr7 28019147 chr17 40351993 BND CALL_659_dMH_7 TP call 0.6136 0 0 0 5637 hg19 7 28058766.0 17 38508245.0 0 0 UNEVALUABLE UNEVALUABLE
659_dMH ADRA1A SGSM1 chr8 26766084 chr22 24853490 BND CALL_659_dMH_8 TP call 0.1022 0 0 916 2 hg19 8 26623601.0 22 25249457.0 0 2 UNEVALUABLE UNEVALUABLE
659_dMH PLEKHF2 intergenic(PLEKHF2,CFAP418) chr8 95154076 chr8 95234552 DUP CALL_659_dMH_9 FP call 0.8419 0 0 1188 1 hg19 8 96166304.0 8 96246780.0 0 1 UNEVALUABLE UNEVALUABLE
659_dMH intergenic(SLC30A8,MED30) MYC chr8 117403657 chr8 127736559 BND CALL_659_dMH_10 FP call 0.1148 0 0 0 4042 hg19 8 118415896.0 8 128748805.0 0 0 UNEVALUABLE UNEVALUABLE
659_dMH FER1L6 intergenic(MED30,EXT1) chr8 124039934 chr8 117591200 BND CALL_659_dMH_11 TP_DUP call 0.1732 0 0 697 1 hg19 8 125052175.0 8 118603439.0 0 1 UNEVALUABLE UNEVALUABLE
659_dMH POU5F1B MYC chr8 127418469 chr8 127736594 BND CALL_659_dMH_12 FP call 0.0001 0 0 3 4412 hg19 8 128430714.0 8 128748840.0 0 3 UNEVALUABLE UNEVALUABLE
659_dMH HIPK3 intergenic(SEC62,GPR160) chr11 33349208 chr3 170033220 BND CALL_659_dMH_13 FP call 0.3397 0 0 715 0 hg19 11 33370754.0 3 169751008.0 0 0 UNEVALUABLE UNEVALUABLE
659_dMH TENM4 intergenic(LRATD2,POU5F1B) chr11 78669196 chr8 126828476 BND CALL_659_dMH_14 TP_DUP call 0.9776 0 0 3115 0 hg19 11 78380241.0 8 127840721.0 0 0 UNEVALUABLE UNEVALUABLE
659_dMH intergenic(AOC3,G6PC1) NBR1 chr17 42859067 chr17 43209608 DUP CALL_659_dMH_15 FP call 0.0231 0 0 4 1183 hg19 17 41011084.0 17 41361627.0 0 4 UNEVALUABLE UNEVALUABLE
659_dMH intergenic(GSPT2,MAGED1) RAPGEFL1 chrX 51784658 chr17 40193407 BND CALL_659_dMH_16 FP call 0.0112 0 0 2 1201 hg19 X 51527754.0 17 38349659.0 0 2 UNEVALUABLE UNEVALUABLE
659_dMH CCDC148 TTN chr2 158209453 chr2 178782820 INVERSION TRUTH_659_dMH_17 TRUTH truth 133.0 0 0 2 1888 hg19 2 159065965.0 2 179647547.0 0 2 UNEVALUABLE UNEVALUABLE
659_dMH MECOM HIPK3 chr3 169593659 chr11 33347959 TRANSLOCATION TRUTH_659_dMH_18 TRUTH truth 50.0 0 0 7 1365 hg19 3 169311447.0 11 33369505.0 0 7 UNEVALUABLE UNEVALUABLE
659_dMH intergenic(SOX2,ATP11B) ST6GAL1 chr3 182512112 chr3 187072926 INVERSION TRUTH_659_dMH_19 TRUTH truth 30.0 0 0 0 264 hg19 3 182229900.0 3 186790714.0 0 0 UNEVALUABLE UNEVALUABLE
659_dMH JAZF1 RARA chr7 28019146 chr17 40351992 TRANSLOCATION TRUTH_659_dMH_20 TRUTH truth 182.0 0 0 0 5634 hg19 7 28058765.0 17 38508244.0 0 0 UNEVALUABLE UNEVALUABLE
659_dMH ADRA1A SGSM1 chr8 26766083 chr22 24853489 TRANSLOCATION TRUTH_659_dMH_21 TRUTH truth 105.0 0 0 916 2 hg19 8 26623600.0 22 25249456.0 0 2 UNEVALUABLE UNEVALUABLE
659_dMH intergenic(MED30,EXT1) FER1L6 chr8 117591198 chr8 124039934 INVERSION TRUTH_659_dMH_22 TRUTH truth 28.0 0 0 1 697 hg19 8 118603437.0 8 125052175.0 0 1 UNEVALUABLE UNEVALUABLE
659_dMH intergenic(LRATD2,POU5F1B) TENM4 chr8 126828475 chr11 78669195 TRANSLOCATION TRUTH_659_dMH_23 TRUTH truth 165.0 0 0 0 3110 hg19 8 127840720.0 11 78380240.0 0 0 UNEVALUABLE UNEVALUABLE
659_dMH intergenic(LRATD2,POU5F1B) ZBTB42 chr8 126947501 chr14 104801876 TRANSLOCATION TRUTH_659_dMH_24 TRUTH truth 45.0 0 0 6 3316 hg19 8 127959746.0 14 105268213.0 0 6 UNEVALUABLE UNEVALUABLE
659_dMH ZBTB42 ASIC2 chr14 104802183 chr17 33578822 TRANSLOCATION TRUTH_659_dMH_25 TRUTH truth 31.0 0 0 2718 5 hg19 14 105268520.0 17 31905841.0 0 5 UNEVALUABLE UNEVALUABLE
659_dMH intergenic(RORA,VPS13C) VPS13C chr15 61474962 chr15 61911902 DUPLICATION TRUTH_659_dMH_26 TRUTH truth 48.0 0 0 2 671 hg19 15 61767161.0 15 62204101.0 0 2 UNEVALUABLE UNEVALUABLE
659_dNQ RMI1 MAMDC4 chr9 83992888 chr9 136857506 DEL CALL_659_dNQ_0 TP call 0.9998 0 0 0 3113 hg19 9.0 86607803.0 9.0 139751958.0 0 0 UNEVALUABLE UNEVALUABLE
659_dNQ SHTN1 FGFR2 chr10 116958430 chr10 121483344 DEL CALL_659_dNQ_1 TP call 0.9983 0 0 3 5205 hg19 10.0 118717941.0 10.0 123242858.0 0 3 UNEVALUABLE UNEVALUABLE
659_dNQ MICAL3 IGLL5 chr22 17915968 chr22 22888398 DUP CALL_659_dNQ_2 FP call 0.0 0 0 0 730 hg19 22.0 18398734.0 22.0 23230578.0 0 0 UNEVALUABLE UNEVALUABLE
659_dNQ RIMBP3 PI4KA chr22 18607915 chr22 20852060 DUP CALL_659_dNQ_3 FP call 0.0001 0 0 6244 19 hg19 22.0 20457782.0 22.0 21206348.0 0 19 UNEVALUABLE UNEVALUABLE
659_dNQ HIRA intergenic(CRYBB2,GRK3) chr22 19444275 chr22 25249978 DUP CALL_659_dNQ_4 FP call 0.0006 0 0 1786 3 hg19 22.0 19431798.0 22.0 25645945.0 0 3 UNEVALUABLE UNEVALUABLE
659_dNQ TRMT2A SLC2A11 chr22 20115423 chr22 23860745 DUP CALL_659_dNQ_5 FP call 0.3456 0 0 1926 9 hg19 22.0 20102946.0 22.0 24202932.0 0 9 UNEVALUABLE UNEVALUABLE
659_dNQ TRMT2A SUN2 chr22 20115424 chr22 38770459 BND CALL_659_dNQ_6 FP call 0.9987 0 0 1924 2 hg19 22.0 20102947.0 22.0 39166464.0 0 2 UNEVALUABLE UNEVALUABLE
659_dNQ IGLL5 intergenic(CRYBB2,GRK3) chr22 22888417 chr22 25402149 DUP CALL_659_dNQ_7 FP call 0.0 0 0 729 6 hg19 22.0 23230597.0 22.0 25798116.0 0 6 UNEVALUABLE UNEVALUABLE
659_dNQ IGLL5 intergenic(SHISAL1,RTL6) chr22 22894374 chr22 44403292 DUP CALL_659_dNQ_8 FP call 0.0 0 0 60 0 hg19 22.0 23236554.0 22.0 44799172.0 0 0 UNEVALUABLE UNEVALUABLE
659_dNQ IGLL5 TCF20 chr22 22894653 chr22 42265941 DEL CALL_659_dNQ_9 FP call 0.0 0 0 3 2 hg19 22.0 23236833.0 22.0 42661947.0 0 2 UNEVALUABLE UNEVALUABLE
659_dNQ intergenic(BCR,IGLL1) CACNA1I chr22 23383008 chr22 39658948 BND CALL_659_dNQ_10 FP call 0.9934 0 0 0 930 hg19 22.0 23725195.0 22.0 40054953.0 0 0 UNEVALUABLE UNEVALUABLE
659_dNQ MYH9 DERL3 chr22 36360229 chr22 23835346 BND CALL_659_dNQ_11 TP_DUP call 0.888 0 0 20 3753 hg19 22.0 36756274.0 22.0 24177533.0 0 20 EVALUABLE BAM_REFUTED
659_dNQ intergenic(TRIOBP,H1-0) PLA2G3 chr22 37802325 chr22 31139882 BND CALL_659_dNQ_12 TP_DUP call 0.9734 0 0 3 1152 hg19 22.0 38198332.0 22.0 31535868.0 0 3 UNEVALUABLE UNEVALUABLE
659_dNQ SUN2 PDGFB chr22 38770559 chr22 39224855 DEL CALL_659_dNQ_13 FP call 0.9976 0 0 3 2 hg19 22.0 39166564.0 22.0 39620860.0 0 2 UNEVALUABLE UNEVALUABLE
659_dNQ CACNA1I PLA2G3 chr22 39593120 chr22 31136954 BND CALL_659_dNQ_14 TP_DUP call 0.9901 0 0 0 947 hg19 22.0 39989125.0 22.0 31532940.0 0 0 UNEVALUABLE UNEVALUABLE
659_dNQ CYB5R3 DERL3 chr22 42646621 chr22 23836351 BND CALL_659_dNQ_15 TP_DUP call 0.9997 0 0 886 3934 hg19 22.0 43042627.0 22.0 24178538.0 0 886 EVALUABLE BAM_REFUTED
659_dNQ BIK intergenic(ENSG00000284874,TBX1) chr22 43127756 chr22 19733702 BND CALL_659_dNQ_16 FP call 0.0028 0 0 525 2 hg19 22.0 43523762.0 22.0 19721225.0 0 2 UNEVALUABLE UNEVALUABLE
659_dNQ PNPLA5 intergenic(TTLL12,SCUBE1) chr22 43886382 chr22 43189595 BND CALL_659_dNQ_17 FP call 0.0003 0 0 1206 0 hg19 22.0 44282262.0 22.0 43585601.0 0 0 UNEVALUABLE UNEVALUABLE
659_dNQ intergenic(.,.) MUC19 chrUn_JTFH01000061v1_decoy 3285 chr12 40514425 BND CALL_659_dNQ_18 FP call 0.001 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_dNQ intergenic(.,.) HLA-A chrUn_JTFH01001288v1_decoy 84 chr6 29948529 BND CALL_659_dNQ_19 FP call 0.0 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_dNQ RMI1 MAMDC4 chr9 83992887 chr9 136857505 DELETION TRUTH_659_dNQ_20 TRUTH truth 171.0 0 0 0 3109 hg19 9.0 86607802.0 9.0 139751957.0 0 0 UNEVALUABLE UNEVALUABLE
659_dNQ SHTN1 FGFR2 chr10 116958429 chr10 121483343 DELETION TRUTH_659_dNQ_21 TRUTH truth 229.0 0 0 3 5205 hg19 10.0 118717940.0 10.0 123242857.0 0 3 UNEVALUABLE UNEVALUABLE
659_dNQ DERL3 MYH9 chr22 23835343 chr22 36360230 INVERSION TRUTH_659_dNQ_22 TRUTH truth 268.0 0 0 3742 20 hg19 22.0 24177530.0 22.0 36756275.0 0 20 EVALUABLE BAM_REFUTED
659_dNQ DERL3 CYB5R3 chr22 23836346 chr22 42646622 INVERSION TRUTH_659_dNQ_23 TRUTH truth 378.0 0 0 3942 886 hg19 22.0 24178533.0 22.0 43042628.0 0 886 EVALUABLE BAM_REFUTED
659_dNQ PLA2G3 CACNA1I chr22 31136952 chr22 39593118 INVERSION TRUTH_659_dNQ_24 TRUTH truth 83.0 0 0 947 0 hg19 22.0 31532938.0 22.0 39989123.0 0 0 UNEVALUABLE UNEVALUABLE
659_dNQ PLA2G3 intergenic(TRIOBP,H1-0) chr22 31139881 chr22 37802324 INVERSION TRUTH_659_dNQ_25 TRUTH truth 60.0 0 0 1152 4 hg19 22.0 31535867.0 22.0 38198331.0 0 4 UNEVALUABLE UNEVALUABLE
659_dNu HLA-B HLA-A chr6 31356470 chr6 29943147 BND CALL_659_dNu_0 FP call 0.0 0 0 7969 8822 hg19 6.0 31324247.0 6.0 29910924.0 0 7969 EVALUABLE BAM_REFUTED
659_dNu CCDC6 RET chr10 59871288 chr10 43115190 BND CALL_659_dNu_1 TP_DUP call 0.9725 0 0 2 9936 hg19 10.0 61631046.0 10.0 43610638.0 0 2 UNEVALUABLE UNEVALUABLE
659_dNu OR8G2P intergenic(OR8G2P,OR8G1) chr11 124224753 chr11 124238572 DUP CALL_659_dNu_2 FP call 0.0018 0 0 1753 306 hg19 11.0 124095458.0 11.0 124109273.0 0 306 EVALUABLE BAM_REFUTED
659_dNu intergenic(.,.) MUC3A chrUn_JTFH01000965v1_decoy 3144 chr7 100952808 BND CALL_659_dNu_3 FP call 0.0003 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_dNu RET CCDC6 chr10 43115188 chr10 59871286 INVERSION TRUTH_659_dNu_4 TRUTH truth 177.0 0 0 9931 2 hg19 10.0 43610636.0 10.0 61631044.0 0 2 UNEVALUABLE UNEVALUABLE
659_ddF intergenic(CTNND2,DNAH5) DNAH5 chr5 13548292 chr5 13716561 DEL CALL_659_ddF_0 TP call 0.9942 0 0 2 414 hg19 5.0 13548401.0 5 13716670.0 0 2 UNEVALUABLE UNEVALUABLE
659_ddF PIK3R1 intergenic(CD180,PIK3R1) chr5 68298158 chr5 67334168 BND CALL_659_ddF_1 FP call 0.0 0 0 250 2 hg19 5.0 67593986.0 5 66629996.0 0 2 UNEVALUABLE UNEVALUABLE
659_ddF HLA-A intergenic(HLA-B,MICA) chr6 29945131 chr6 31382195 BND CALL_659_ddF_2 FP call 0.0002 0 0 6041 145 hg19 6.0 29912908.0 6 31349972.0 0 145 EVALUABLE BAM_REFUTED
659_ddF HLA-C HLA-B chr6 31270972 chr6 31356180 DUP CALL_659_ddF_3 FP call 0.0015 35 0 6811 5847 hg19 6.0 31238749.0 6 31323957.0 35 5847 EVALUABLE BAM_CONFIRMED
659_ddF EPHA7 EIF4B chr6 93409672 chr12 53018589 BND CALL_659_ddF_4 FP call 0.0 0 0 4 666 hg19 6.0 94119390.0 12 53412373.0 0 4 UNEVALUABLE UNEVALUABLE
659_ddF intergenic(CCN2,MOXD1) GTF3C1 chr6 132131810 chr16 27489176 BND CALL_659_ddF_5 TP call 0.9824 0 0 0 569 hg19 6.0 132452950.0 16 27500497.0 0 0 UNEVALUABLE UNEVALUABLE
659_ddF TYW1 TYW1B chr7 67014397 chr7 72810494 BND CALL_659_ddF_6 FP call 0.0 0 0 1063 879 hg19 7.0 66479384.0 7 72281080.0 0 879 EVALUABLE BAM_REFUTED
659_ddF ZNF783 ERBB2 chr7 149264846 chr17 39717610 BND CALL_659_ddF_7 FP call 0.0 0 0 4 1519 hg19 7.0 148961937.0 17 37873863.0 0 4 UNEVALUABLE UNEVALUABLE
659_ddF ERLIN2 intergenic(BORCS5,DUSP16) chr8 37744614 chr12 12472844 BND CALL_659_ddF_8 FP call 0.0005 0 0 525 0 hg19 8.0 37602132.0 12 12625778.0 0 0 UNEVALUABLE UNEVALUABLE
659_ddF EIF4EBP1 SLC20A2 chr8 38032178 chr8 42472258 BND CALL_659_ddF_9 FP call 0.0023 0 0 1 652 hg19 8.0 37889696.0 8 42329776.0 0 1 UNEVALUABLE UNEVALUABLE
659_ddF OXR1 IKZF3 chr8 106516275 chr17 39763032 BND CALL_659_ddF_10 FP call 0.0221 0 0 4 12 hg19 8.0 107528503.0 17 37919285.0 0 4 UNEVALUABLE UNEVALUABLE
659_ddF LRP6 RAB11FIP1 chr12 12202987 chr8 37874718 BND CALL_659_ddF_11 FP call 0.8865 0 0 333 1606 hg19 12.0 12355921.0 8 37732236.0 0 333 EVALUABLE BAM_REFUTED
659_ddF BORCS5 IKZF3 chr12 12454352 chr17 39760063 BND CALL_659_ddF_12 FP call 0.0012 0 0 2 11 hg19 12.0 12607286.0 17 37916316.0 0 2 UNEVALUABLE UNEVALUABLE
659_ddF GRIN2B LRRC3C chr12 13563469 chr17 39942032 BND CALL_659_ddF_13 FP call 0.0269 0 0 1922 191 hg19 12.0 13716403.0 17 38098285.0 0 191 EVALUABLE BAM_REFUTED
659_ddF GRIN2B ERBB2 chr12 13574049 chr17 39725345 BND CALL_659_ddF_14 FP call 0.0 0 0 3 4662 hg19 12.0 13726983.0 17 37881598.0 0 3 UNEVALUABLE UNEVALUABLE
659_ddF TAOK3 LAMA5 chr12 118254824 chr20 62330582 BND CALL_659_ddF_15 FP call 0.2192 0 0 66 1407 hg19 12.0 118692629.0 20 60905638.0 0 66 EVALUABLE BAM_REFUTED
659_ddF PRKD1 ORMDL3 chr14 29632040 chr17 39923218 BND CALL_659_ddF_16 FP call 0.0001 0 0 7 795 hg19 14.0 30101246.0 17 38079471.0 0 7 UNEVALUABLE UNEVALUABLE
659_ddF NTRK3 ZNF236 chr15 88033598 chr18 76961298 BND CALL_659_ddF_17 FP call 0.0001 0 0 185 439 hg19 15.0 88576829.0 18 74673254.0 0 185 EVALUABLE BAM_REFUTED
659_ddF intergenic(CDK12,NEUROD2) ETV6 chr17 39593476 chr12 11838134 BND CALL_659_ddF_18 FP call 0.8954 0 0 4 0 hg19 17.0 37749729.0 12 11991068.0 0 0 UNEVALUABLE UNEVALUABLE
659_ddF PNMT BCL2L14 chr17 39670038 chr12 12095526 BND CALL_659_ddF_19 FP call 0.0213 0 0 1215 2378 hg19 17.0 37826291.0 12 12248460.0 0 1215 EVALUABLE BAM_REFUTED
659_ddF intergenic(MIEN1,GRB7) IKZF3 chr17 39735357 chr17 39759673 BND CALL_659_ddF_20 FP call 0.0019 0 0 6 3 hg19 17.0 37891610.0 17 37915926.0 0 3 UNEVALUABLE UNEVALUABLE
659_ddF IKZF3 intergenic(TOX,CA8) chr17 39763422 chr8 60012620 BND CALL_659_ddF_21 FP call 0.0006 0 0 6 0 hg19 17.0 37919675.0 8 60925179.0 0 0 UNEVALUABLE UNEVALUABLE
659_ddF CSF3 IGFBP4 chr17 40016909 chr17 40448185 DEL CALL_659_ddF_22 FP call 0.6721 0 0 1185 4 hg19 17.0 38173162.0 17 38604437.0 0 4 UNEVALUABLE UNEVALUABLE
659_ddF MED24 MAGEE1 chr17 40026357 chrX 76429066 BND CALL_659_ddF_23 TP_DUP call 0.9674 0 0 1198 3922 hg19 17.0 38182610.0 X 75649459.0 0 1198 EVALUABLE BAM_REFUTED
659_ddF SSTR2 intergenic(SLC39A11,SSTR2) chr17 73169624 chr17 73135307 BND CALL_659_ddF_24 TP_DUP call 0.984 0 0 2364 8 hg19 17.0 71165763.0 17 71131446.0 0 8 UNEVALUABLE UNEVALUABLE
659_ddF HGS GPS1 chr17 81695098 chr17 82056700 BND CALL_659_ddF_25 TP call 0.9473 0 0 1165 2316 hg19 17.0 79662128.0 17 80014576.0 0 1165 EVALUABLE BAM_REFUTED
659_ddF intergenic(KIR2DL3,KIR2DL1) KIR2DL1 chr19 54760592 chr19 54775345 DEL CALL_659_ddF_26 FP call 0.0077 0 0 0 0 hg19 19.0 55272044.0 19 55286797.0 0 0 UNEVALUABLE UNEVALUABLE
659_ddF intergenic(CDH26,CDH4) LAMA5 chr20 60400533 chr20 62337915 DUP CALL_659_ddF_27 TP call 0.997 0 0 0 2490 hg19 20.0 58975591.0 20 60912971.0 0 0 UNEVALUABLE UNEVALUABLE
659_ddF intergenic(.,.) MUC3A chrUn_JTFH01000965v1_decoy 3227 chr7 100952828 BND CALL_659_ddF_28 FP call 0.0004 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_ddF intergenic(CTNND2,DNAH5) DNAH5 chr5 13548291 chr5 13716560 DELETION TRUTH_659_ddF_29 TRUTH truth 30.0 0 0 2 414 hg19 5.0 13548400.0 5 13716669.0 0 2 UNEVALUABLE UNEVALUABLE
659_ddF intergenic(CCN2,MOXD1) GTF3C1 chr6 132131809 chr16 27489175 TRANSLOCATION TRUTH_659_ddF_30 TRUTH truth 22.0 0 0 0 569 hg19 6.0 132452949.0 16 27500496.0 0 0 UNEVALUABLE UNEVALUABLE
659_ddF MED24 MAGEE1 chr17 40026011 chrX 76428879 TRANSLOCATION TRUTH_659_ddF_31 TRUTH truth 356.0 0 0 654 4000 hg19 17.0 38182264.0 X 75649272.0 0 654 EVALUABLE BAM_REFUTED
659_ddF intergenic(SLC39A11,SSTR2) SSTR2 chr17 73135304 chr17 73169623 INVERSION TRUTH_659_ddF_32 TRUTH truth 91.0 0 0 8 2362 hg19 17.0 71131443.0 17 71165762.0 0 8 UNEVALUABLE UNEVALUABLE
659_ddF HGS GPS1 chr17 81695097 chr17 82056699 INVERSION TRUTH_659_ddF_33 TRUTH truth 239.0 0 0 1165 2317 hg19 17.0 79662127.0 17 80014575.0 0 1165 EVALUABLE BAM_REFUTED
659_ddF intergenic(CDH26,CDH4) LAMA5 chr20 60400532 chr20 62337914 DUPLICATION TRUTH_659_ddF_34 TRUTH truth 76.0 0 0 0 2488 hg19 20.0 58975590.0 20 60912970.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebq EWSR1 FLI1 chr22 29291633 chr11 128801810 BND CALL_659_ebq_0 TP_DUP call 0.9999 0 0 7131 0 hg19 22 29687622.0 11 128671705.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebq FLI1 EWSR1 chr11 128801809 chr22 29291632 TRANSLOCATION TRUTH_659_ebq_1 TRUTH truth 295.0 0 0 0 7120 hg19 11 128671704.0 22 29687621.0 0 0 UNEVALUABLE UNEVALUABLE
659_ehU intergenic(FAM98A,CRIM1) BIRC6 chr2 35217219 chr2 32493614 BND CALL_659_ehU_0 FP call 0.0013 0 0 2 371 hg19 2 35442285.0 2 32718681.0 0 2 UNEVALUABLE UNEVALUABLE
659_ehU intergenic(TMEM17,EHBP1) FAM120AOS chr2 62588461 chr9 93447654 BND CALL_659_ehU_1 FP call 0.0001 0 0 0 336 hg19 2 62815596.0 9 96209936.0 0 0 UNEVALUABLE UNEVALUABLE
659_ehU GTF3C3 ANKRD44 chr2 196780594 chr2 197026920 DUP CALL_659_ehU_2 FP call 0.0001 0 0 546 3 hg19 2 197645318.0 2 197891644.0 0 3 UNEVALUABLE UNEVALUABLE
659_ehU intergenic(SATB1,KCNH8) BCL2 chr3 18481927 chr18 63128464 BND CALL_659_ehU_3 FP call 0.0 0 0 0 5772 hg19 3 18523419.0 18 60795697.0 0 0 UNEVALUABLE UNEVALUABLE
659_ehU intergenic(DPPA4,NECTIN3) BCL2 chr3 109753329 chr18 63128464 BND CALL_659_ehU_4 FP call 0.0 0 0 2 5772 hg19 3 109472176.0 18 60795697.0 0 2 UNEVALUABLE UNEVALUABLE
659_ehU P2RY1 intergenic(RAP2B,ARHGEF26) chr3 152836866 chr3 154008788 DUP CALL_659_ehU_5 FP call 0.0055 0 0 1129 0 hg19 3 152554655.0 3 153726577.0 0 0 UNEVALUABLE UNEVALUABLE
659_ehU intergenic(GRXCR1,KCTD8) KIF15 chr4 43710636 chr3 44784865 BND CALL_659_ehU_6 FP call 0.0001 0 0 1 162 hg19 4 43712653.0 3 44826357.0 0 1 UNEVALUABLE UNEVALUABLE
659_ehU intergenic(ADAMTS3,COX18) ADGRL4 chr4 72893211 chr1 78893138 BND CALL_659_ehU_7 FP call 0.0004 0 0 2 270 hg19 4 73758928.0 1 79358823.0 0 2 UNEVALUABLE UNEVALUABLE
659_ehU CCSER1 AR chr4 90601568 chrX 67687188 BND CALL_659_ehU_8 FP call 0.0 0 0 1 0 hg19 4 91522719.0 X 66907030.0 0 0 UNEVALUABLE UNEVALUABLE
659_ehU intergenic(TRIML2,TRIML1) FAT4 chr4 188128719 chr4 125451541 BND CALL_659_ehU_9 FP call 0.0 0 0 10 2603 hg19 4 189049873.0 4 126372696.0 0 10 UNEVALUABLE UNEVALUABLE
659_ehU CENPK intergenic(CILP,PARP16) chr5 65554898 chr15 65221682 BND CALL_659_ehU_10 FP call 0.0004 0 0 192 3 hg19 5 64850725.0 15 65514020.0 0 3 UNEVALUABLE UNEVALUABLE
659_ehU SGCD BCL2 chr5 156287669 chr18 63128464 BND CALL_659_ehU_11 FP call 0.0 0 0 2 5772 hg19 5 155714679.0 18 60795697.0 0 2 UNEVALUABLE UNEVALUABLE
659_ehU MYB intergenic(C12orf75,NUAK1) chr6 135206780 chr12 105998681 BND CALL_659_ehU_12 FP call 0.0 0 0 2396 0 hg19 6 135527918.0 12 106392459.0 0 0 UNEVALUABLE UNEVALUABLE
659_ehU ULBP1 intergenic(PPP1R14C,IYD) chr6 149969303 chr6 150301152 BND CALL_659_ehU_13 FP call 0.0008 0 0 1448 0 hg19 6 150290439.0 6 150622288.0 0 0 UNEVALUABLE UNEVALUABLE
659_ehU intergenic(NEUROD6,ITPRID1) NAE1 chr7 31389346 chr16 66823592 BND CALL_659_ehU_14 FP call 0.0002 0 0 0 504 hg19 7 31428960.0 16 66857495.0 0 0 UNEVALUABLE UNEVALUABLE
659_ehU EGFR RDX chr7 55205003 chr11 110125297 BND CALL_659_ehU_15 FP call 0.0 0 0 14327 4 hg19 7 55272696.0 11 109996022.0 0 4 UNEVALUABLE UNEVALUABLE
659_ehU LHFPL3 NHLRC2 chr7 104490092 chr10 113858627 BND CALL_659_ehU_16 FP call 0.0 0 0 0 251 hg19 7 104130540.0 10 115618386.0 0 0 UNEVALUABLE UNEVALUABLE
659_ehU DOCK5 NTRK3 chr8 25391198 chr15 88059051 BND CALL_659_ehU_17 FP call 0.0 0 0 17 0 hg19 8 25248714.0 15 88602282.0 0 0 UNEVALUABLE UNEVALUABLE
659_ehU ARHGAP19-SLIT1 EPM2AIP1 chr10 97210246 chr3 36988247 BND CALL_659_ehU_18 FP call 0.0 0 0 14 2 hg19 10 98970003.0 3 37029738.0 0 2 UNEVALUABLE UNEVALUABLE
659_ehU intergenic(MARVELD1,ZFYVE27) TRIM9 chr10 97725053 chr14 51025265 BND CALL_659_ehU_19 FP call 0.001 0 0 2 350 hg19 10 99484810.0 14 51491983.0 0 2 UNEVALUABLE UNEVALUABLE
659_ehU OR4C15 intergenic(OR4A15,OR4C15) chr11 55554324 chr11 55554192 BND CALL_659_ehU_20 FP call 0.0005 373 0 959 695 hg19 11 55321800.0 11 55321668.0 373 695 EVALUABLE BAM_CONFIRMED
659_ehU SMCO4 FBXW7 chr11 93504909 chr4 152322262 BND CALL_659_ehU_21 FP call 0.0 0 0 2 62 hg19 11 93238075.0 4 153243414.0 0 2 UNEVALUABLE UNEVALUABLE
659_ehU OTOGL EPYC chr12 80336485 chr12 91004235 DEL CALL_659_ehU_22 FP call 0.0008 0 0 1475 0 hg19 12 80730265.0 12 91398012.0 0 0 UNEVALUABLE UNEVALUABLE
659_ehU TMTC2 BCL2 chr12 83055744 chr18 63128464 BND CALL_659_ehU_23 FP call 0.0 0 0 0 5772 hg19 12 83449523.0 18 60795697.0 0 0 UNEVALUABLE UNEVALUABLE
659_ehU IGF1 KDM5A chr12 102402387 chr12 352193 BND CALL_659_ehU_24 FP call 0.0 0 0 1103 939 hg19 12 102796165.0 12 461359.0 0 939 EVALUABLE BAM_REFUTED
659_ehU C14orf39 RTL4 chr14 60468466 chrX 112361585 BND CALL_659_ehU_25 FP call 0.0003 0 0 181 0 hg19 14 60935184.0 X 111604813.0 0 0 UNEVALUABLE UNEVALUABLE
659_ehU GALC intergenic(SEL1L,FLRT2) chr14 87950659 chr14 82137560 BND CALL_659_ehU_26 FP call 0.0 0 0 194 0 hg19 14 88417003.0 14 82603904.0 0 0 UNEVALUABLE UNEVALUABLE
659_ehU PAK6 CNTNAP2 chr15 40272338 chr7 146976593 BND CALL_659_ehU_27 FP call 0.0008 0 0 1671 0 hg19 15 40564539.0 7 146673685.0 0 0 UNEVALUABLE UNEVALUABLE
659_ehU UBR1 TMEM132D chr15 42998265 chr12 129508919 BND CALL_659_ehU_28 FP call 0.0003 0 0 323 0 hg19 15 43290463.0 12 129993464.0 0 0 UNEVALUABLE UNEVALUABLE
659_ehU PDE8A intergenic(PDE8A,AKAP13) chr15 85115459 chr15 85166995 DEL CALL_659_ehU_29 FP call 0.0011 0 0 210 0 hg19 15 85658690.0 15 85710226.0 0 0 UNEVALUABLE UNEVALUABLE
659_ehU intergenic(CDH8,CDH11) BCL2 chr16 63257970 chr18 63128464 BND CALL_659_ehU_30 FP call 0.0 0 0 2 5772 hg19 16 63291874.0 18 60795697.0 0 2 UNEVALUABLE UNEVALUABLE
659_ehU BRCA1 MAPT chr17 43066732 chr17 46013962 DUP CALL_659_ehU_31 FP call 0.0001 0 0 2302 206 hg19 17 41218749.0 17 44091328.0 0 206 EVALUABLE BAM_REFUTED
659_ehU BCL2 FRMPD3 chr18 63128464 chrX 107531112 BND CALL_659_ehU_32 FP call 0.0 0 0 5772 10 hg19 18 60795697.0 X 106774342.0 0 10 UNEVALUABLE UNEVALUABLE
659_ehU BCL2 INTS6L chr18 63128464 chrX 135575826 BND CALL_659_ehU_33 FP call 0.0002 0 0 5772 41 hg19 18 60795697.0 X 134709751.0 0 41 EVALUABLE BAM_REFUTED
659_ehU ATP8B3 LPP chr19 1795889 chr3 188664674 BND CALL_659_ehU_34 FP call 0.0 0 0 1139 0 hg19 19 1795888.0 3 188382462.0 0 0 UNEVALUABLE UNEVALUABLE
659_ehU NOTCH3 intergenic(DACT2,SMOC2) chr19 15187467 chr6 168405008 BND CALL_659_ehU_35 FP call 0.0 0 0 3062 5 hg19 19 15298278.0 6 168805688.0 0 5 UNEVALUABLE UNEVALUABLE
659_ehU TSHZ2 NTRK3 chr20 52977530 chr15 88010677 BND CALL_659_ehU_36 FP call 0.0 0 0 3 3 hg19 20 51594069.0 15 88553908.0 0 3 UNEVALUABLE UNEVALUABLE
659_ehU intergenic(GABPA,APP) NTRK3 chr21 25865505 chr15 88050577 BND CALL_659_ehU_37 FP call 0.0 0 0 7 1 hg19 21 27237816.0 15 88593808.0 0 1 UNEVALUABLE UNEVALUABLE
659_ehU FANCB TP63 chrX 14850596 chr3 189699106 BND CALL_659_ehU_38 FP call 0.0003 0 0 106 0 hg19 X 14868718.0 3 189416895.0 0 0 UNEVALUABLE UNEVALUABLE
659_ehU ACE2 ETNK1 chrX 15511484 chr12 22673039 BND CALL_659_ehU_39 FP call 0.0 0 0 148 163 hg19 X 15529607.0 12 22825973.0 0 148 EVALUABLE BAM_REFUTED
659_ehU DMD CFAP47 chrX 31952382 chrX 36160693 BND CALL_659_ehU_40 FP call 0.0007 0 0 0 2 hg19 X 31970499.0 X 36178810.0 0 0 UNEVALUABLE UNEVALUABLE
659_ehU CFAP47 intergenic(PRKX,NLGN4X) chrX 36099751 chrX 4758555 BND CALL_659_ehU_41 FP call 0.0 0 0 49 0 hg19 X 36117868.0 X 4676596.0 0 0 UNEVALUABLE UNEVALUABLE
659_ehU MAGT1 ATRX chrX 77871169 chrX 77562355 BND CALL_659_ehU_42 FP call 0.0003 0 0 119 0 hg19 X 77126666.0 X 76817824.0 0 0 UNEVALUABLE UNEVALUABLE
659_ehU EIF1AY ALMS1 chrY 20589513 chr2 73596762 BND CALL_659_ehU_43 FP call 0.0002 0 0 139 4 hg19 Y 22751399.0 2 73823889.0 0 4 UNEVALUABLE UNEVALUABLE
659_ehU intergenic(.,.) HLA-DPB1 chr6_GL000255v2_alt 4275344 chr6 33080846 BND CALL_659_ehU_44 FP call 0.0369 573 0 1153 1153 hg19 6 33048483.0 6 33048623.0 573 1153 EVALUABLE BAM_CONFIRMED
659_ehU intergenic(ARL6IP6,RPRM) SLC22A25 chr2 153443424 chr11 63164572 TRANSLOCATION TRUTH_659_ehU_45 TRUTH truth 6.0 0 0 25 594 hg19 2 154299938.0 11 62932044.0 0 25 EVALUABLE BAM_REFUTED
659_ehU HRH1 intergenic(MYL10,CUX1) chr3 11259246 chr7 101805923 TRANSLOCATION TRUTH_659_ehU_46 TRUTH truth 12.0 0 0 1510 6 hg19 3 11300932.0 7 101449203.0 0 6 UNEVALUABLE UNEVALUABLE
659_ehU intergenic(F11,ENSG00000272297) FAT1 chr4 186326573 chr4 186663307 INVERSION TRUTH_659_ehU_47 TRUTH truth 17.0 0 0 0 2220 hg19 4 187247727.0 4 187584461.0 0 0 UNEVALUABLE UNEVALUABLE
659_ehU SEMA5A ARID1B chr5 9190425 chr6 156993106 TRANSLOCATION TRUTH_659_ehU_48 TRUTH truth 9.0 0 0 646 13 hg19 5 9190537.0 6 157314240.0 0 13 UNEVALUABLE UNEVALUABLE
659_ehU EMB intergenic(BEGAIN,DLK1) chr5 50441075 chr14 100656638 TRANSLOCATION TRUTH_659_ehU_49 TRUTH truth 7.0 0 0 375 0 hg19 5 49736909.0 14 101122975.0 0 0 UNEVALUABLE UNEVALUABLE
659_ehU intergenic(MOCS1,LRFN2) LRRC25 chr6 40247280 chr19 18396495 TRANSLOCATION TRUTH_659_ehU_50 TRUTH truth 13.0 0 0 6 2681 hg19 6 40215019.0 19 18507305.0 0 6 UNEVALUABLE UNEVALUABLE
659_ehU CEP85L MORC2 chr6 118616708 chr22 30935029 TRANSLOCATION TRUTH_659_ehU_51 TRUTH truth 10.0 0 0 5 1674 hg19 6 118937871.0 22 31331016.0 0 5 UNEVALUABLE UNEVALUABLE
659_ehU SLC13A1 intergenic(MYC,GSDMC) chr7 123119098 chr8 128781177 TRANSLOCATION TRUTH_659_ehU_52 TRUTH truth 16.0 0 0 412 0 hg19 7 122759152.0 8 129793423.0 0 0 UNEVALUABLE UNEVALUABLE
1173_9C intergenic(SNTN,C3orf49) C2CD4D chr3 63710486 chr1 151838030 BND CALL_1173_9C_0 FP call 0.1075 0 0 0 2217 hg19 3 63696162.0 1 151810506.0 0 0 UNEVALUABLE UNEVALUABLE
1173_9C TSSK1B intergenic(EFNA5,FBXL17) chr5 113434833 chr5 107686790 BND CALL_1173_9C_1 TP_DUP call 0.0 0 0 1947 4 hg19 5 112770530.0 5 107022491.0 0 4 UNEVALUABLE UNEVALUABLE
1173_9C FEM1C intergenic(CCDC112,FEM1C) chr5 115525205 chr5 115520844 BND CALL_1173_9C_2 TP_DUP call 0.7343 0 0 2604 2 hg19 5 114860902.0 5 114856541.0 0 2 UNEVALUABLE UNEVALUABLE
1173_9C TRERF1 FEM1C chr6 42435605 chr5 115525118 BND CALL_1173_9C_3 TP_DUP call 0.9551 0 0 6 2818 hg19 6 42403343.0 5 114860815.0 0 6 UNEVALUABLE UNEVALUABLE
1173_9C intergenic(JUP,P3H4) RARA chr17 41798992 chr17 40354349 BND CALL_1173_9C_4 TP_DUP call 0.575 0 0 18 2159 hg19 17 39955244.0 17 38510601.0 0 18 UNEVALUABLE UNEVALUABLE
1173_9C intergenic(EFNA5,FBXL17) TSSK1B chr5 107686789 chr5 113434832 INVERSION TRUTH_1173_9C_5 TRUTH truth 36.0 0 0 4 1956 hg19 5 107022490.0 5 112770529.0 0 4 UNEVALUABLE UNEVALUABLE
1173_9C intergenic(CCDC112,FEM1C) FEM1C chr5 115520840 chr5 115525207 INVERSION TRUTH_1173_9C_6 TRUTH truth 152.0 0 0 2 2604 hg19 5 114856537.0 5 114860904.0 0 2 UNEVALUABLE UNEVALUABLE
1173_9C FEM1C TRERF1 chr5 115525117 chr6 42435604 TRANSLOCATION TRUTH_1173_9C_7 TRUTH truth 64.0 0 0 2823 6 hg19 5 114860814.0 6 42403342.0 0 6 UNEVALUABLE UNEVALUABLE
1173_9C RARA intergenic(JUP,P3H4) chr17 40354432 chr17 41798965 INVERSION TRUTH_1173_9C_8 TRUTH truth 161.0 0 0 2160 18 hg19 17 38510684.0 17 39955217.0 0 18 UNEVALUABLE UNEVALUABLE
1173_F0Y DDR2 intergenic(MPHOSPH6,CDH13) chr1 162784093 chr16 82286018 BND CALL_1173_F0Y_0 FP call 0.0 0 0 2 3 hg19 1 162753883.0 16 82319623.0 0 2 UNEVALUABLE UNEVALUABLE
1173_F0Y ABL2 RARS2 chr1 179101712 chr6 87533384 BND CALL_1173_F0Y_1 FP call 0.0004 0 0 16 0 hg19 1 179070847.0 6 88243102.0 0 0 UNEVALUABLE UNEVALUABLE
1173_F0Y SLC35F5 KCNJ10 chr2 113717817 chr1 160012065 BND CALL_1173_F0Y_2 FP call 0.0153 0 0 423 2 hg19 2 114475394.0 1 159981855.0 0 2 UNEVALUABLE UNEVALUABLE
1173_F0Y TMEM41A intergenic(MAGEB17,CTPS2) chr3 185483091 chrX 16517977 BND CALL_1173_F0Y_3 FP call 0.0 0 0 33 0 hg19 3 185200879.0 X 16536100.0 0 0 UNEVALUABLE UNEVALUABLE
1173_F0Y PCDH7 PTPRB chr4 31061066 chr12 70636050 BND CALL_1173_F0Y_4 FP call 0.0012 0 0 0 1984 hg19 4 31062688.0 12 71029830.0 0 0 UNEVALUABLE UNEVALUABLE
1173_F0Y ELF2 PLD1 chr4 139137673 chr3 171712888 BND CALL_1173_F0Y_5 FP call 0.0032 0 0 1014 2 hg19 4 140058827.0 3 171430678.0 0 2 UNEVALUABLE UNEVALUABLE
1173_F0Y intergenic(MAN2A1,TMEM232) ECM1 chr5 110032706 chr1 150512539 BND CALL_1173_F0Y_6 FP call 0.0 0 0 0 1722 hg19 5 109368407.0 1 150485015.0 0 0 UNEVALUABLE UNEVALUABLE
1173_F0Y HLA-C DOCK3 chr6 31270813 chr3 50889235 BND CALL_1173_F0Y_7 FP call 0.0003 0 0 8266 16 hg19 6 31238590.0 3 50926666.0 0 16 UNEVALUABLE UNEVALUABLE
1173_F0Y HLA-B TRERF1 chr6 31355811 chr6 42369249 BND CALL_1173_F0Y_8 FP call 0.0009 0 0 7871 4 hg19 6 31323588.0 6 42336987.0 0 4 UNEVALUABLE UNEVALUABLE
1173_F0Y intergenic(INHBA,GLI3) DARS1 chr7 41710849 chr2 135924333 BND CALL_1173_F0Y_9 FP call 0.0 0 0 0 126 hg19 7 41750447.0 2 136681903.0 0 0 UNEVALUABLE UNEVALUABLE
1173_F0Y SPTAN1 intergenic(DYNC2I2,SET) chr9 128583118 chr9 128677453 DEL CALL_1173_F0Y_10 FP call 0.0954 0 0 1649 2 hg19 9 131345397.0 9 131439732.0 0 2 UNEVALUABLE UNEVALUABLE
1173_F0Y CARD18 MPL chr11 105138172 chr1 43339350 BND CALL_1173_F0Y_11 FP call 0.0 0 0 61 3712 hg19 11 105008899.0 1 43805021.0 0 61 EVALUABLE BAM_REFUTED
1173_F0Y SRRM2 FFAR2 chr16 2763104 chr19 35444642 BND CALL_1173_F0Y_12 FP call 0.0086 0 0 4441 32 hg19 16 2813105.0 19 35935544.0 0 32 EVALUABLE BAM_REFUTED
1173_F0Y SRRM2 intergenic(GPR42,FFAR2) chr16 2763487 chr19 35431092 BND CALL_1173_F0Y_13 FP call 0.0039 0 0 4237 0 hg19 16 2813488.0 19 35921994.0 0 0 UNEVALUABLE UNEVALUABLE
1173_F0Y COL20A1 intergenic(ATP2B1,CCER1) chr20 63295151 chr12 90393466 BND CALL_1173_F0Y_14 FP call 0.0002 0 0 276 4 hg19 20 61926503.0 12 90787243.0 0 4 UNEVALUABLE UNEVALUABLE
1173_F0Y intergenic(FUNDC1,DUSP21) BCL6 chrX 44823132 chr3 187741925 BND CALL_1173_F0Y_15 FP call 0.177 0 0 0 5 hg19 X 44682378.0 3 187459713.0 0 0 UNEVALUABLE UNEVALUABLE
1173_IT6 MUTYH intergenic(SQOR,SEMA6D) chr1 45332846 chr15 45728731 BND CALL_1173_IT6_0 FP call 0.0 0 0 7146 2 hg19 1 45798518.0 15 46020929.0 0 2 UNEVALUABLE UNEVALUABLE
1173_IT6 intergenic(CYP4A11,CYP4X1) CYP4Z1 chr1 46992398 chr1 47067589 DEL CALL_1173_IT6_1 TP call 0.9982 0 0 0 874 hg19 1 47458070.0 1 47533261.0 0 0 UNEVALUABLE UNEVALUABLE
1173_IT6 intergenic(NREP,EPB41L4A) EPB41L4A chr5 112131893 chr5 112143786 DEL CALL_1173_IT6_2 FP call 0.9363 0 0 1 0 hg19 5 111467590.0 5 111479483.0 0 0 UNEVALUABLE UNEVALUABLE
1173_IT6 HLA-G HLA-A chr6 29827615 chr6 29942318 DUP CALL_1173_IT6_3 FP call 0.0 0 0 1428 8016 hg19 6 29795392.0 6 29910095.0 0 1428 EVALUABLE BAM_REFUTED
1173_IT6 AVEN MUTYH chr15 34032767 chr1 45331506 BND CALL_1173_IT6_4 FP call 0.0 0 0 1 8342 hg19 15 34324968.0 1 45797178.0 0 1 UNEVALUABLE UNEVALUABLE
1173_IT6 TUBGCP4 intergenic(.,.) chr15 43405472 chr17_GL000205v2_random 7509 BND CALL_1173_IT6_5 FP call 0.0 -1 -1 0 0 hg19 15 43697670.0 chr17_gl000205_random 167078.0 -2 0 UNEVALUABLE UNEVALUABLE
1173_IT6 intergenic(DMXL2,SCG3) MUTYH chr15 51667148 chr1 45332057 BND CALL_1173_IT6_6 FP call 0.0 0 0 0 8659 hg19 15 51959345.0 1 45797729.0 0 0 UNEVALUABLE UNEVALUABLE
1173_IT6 intergenic(CYP4A11,CYP4X1) CYP4Z1 chr1 46992397 chr1 47067588 DELETION TRUTH_1173_IT6_7 TRUTH truth 178.0 0 0 0 874 hg19 1 47458069.0 1 47533260.0 0 0 UNEVALUABLE UNEVALUABLE
1173_NMN ADGRL2 INKA2 chr1 81336393 chr1 111727311 DEL CALL_1173_NMN_0 TP call 0.9149 0 0 0 3317 hg19 1 81802078.0 1 112269933.0 0 0 UNEVALUABLE UNEVALUABLE
1173_NMN OR2T27 OR2T7 chr1 248651007 chr1 248441213 BND CALL_1173_NMN_1 FP call 0.0007 1 0 927 1254 hg19 1 248814308.0 1 248604514.0 1 927 EVALUABLE BAM_AMBIGUOUS
1173_NMN PDPK1 intergenic(PDPK1,KCTD5) chr16 2601165 chr16 2679824 DEL CALL_1173_NMN_2 FP call 0.0 0 0 1 1 hg19 16 2651166.0 16 2729825.0 0 1 UNEVALUABLE UNEVALUABLE
1173_NMN PPM1D MARK2 chr17 60600356 chr11 63840271 BND CALL_1173_NMN_3 FP call 0.8072 0 0 2132 24 hg19 17 58677717.0 11 63607743.0 0 24 EVALUABLE BAM_REFUTED
1173_NMN GINS1 TMEM41A chr20 25393643 chr3 185483726 BND CALL_1173_NMN_4 FP call 0.0 0 0 10 17 hg19 20 25374279.0 3 185201514.0 0 10 UNEVALUABLE UNEVALUABLE
1173_NMN ADGRL2 INKA2 chr1 81336392 chr1 111727310 DELETION TRUTH_1173_NMN_5 TRUTH truth 59.0 0 0 0 3317 hg19 1 81802077.0 1 112269932.0 0 0 UNEVALUABLE UNEVALUABLE
1173_LAF HSPG2 intergenic(WNT4,ZBTB40) chr1 21854665 chr1 22281250 DUP CALL_1173_LAF_0 FP call 0.9373 0 0 2199 10 hg19 1.0 22181158.0 1.0 22607743.0 0 10 UNEVALUABLE UNEVALUABLE
1173_LAF BIRC6 intergenic(FAM98A,CRIM1) chr2 32357438 chr2 33683955 DUP CALL_1173_LAF_1 TP call 0.7928 0 0 1414 1 hg19 2.0 32582506.0 2.0 33909022.0 0 1 UNEVALUABLE UNEVALUABLE
1173_LAF MST1 PRKCD chr3 49689020 chr3 53178275 DEL CALL_1173_LAF_2 FP call 0.5324 0 0 566 460 hg19 3.0 49726453.0 3.0 53212291.0 0 460 EVALUABLE BAM_REFUTED
1173_LAF NEK4 MST1 chr3 52708551 chr3 49688705 BND CALL_1173_LAF_3 FP call 0.0206 0 0 27 593 hg19 3.0 52742567.0 3.0 49726138.0 0 27 EVALUABLE BAM_REFUTED
1173_LAF CANX TRIM41 chr5 179679026 chr5 181225582 DUP CALL_1173_LAF_4 TP call 0.005 0 0 1981 8 hg19 5.0 179106027.0 5.0 180652582.0 0 8 UNEVALUABLE UNEVALUABLE
1173_LAF VPS50 NRXN3 chr7 93356045 chr14 79716739 BND CALL_1173_LAF_5 FP call 0.0002 0 0 375 2 hg19 7.0 92985357.0 14.0 80183082.0 0 2 UNEVALUABLE UNEVALUABLE
1173_LAF NRG1 ALMS1 chr8 32698379 chr2 73520694 BND CALL_1173_LAF_6 FP call 0.0001 0 0 6 24 hg19 8.0 32555897.0 2.0 73747821.0 0 6 UNEVALUABLE UNEVALUABLE
1173_LAF CDKN2A intergenic(CDKN2A,CDKN2B) chr9 21995060 chr9 21996193 DEL CALL_1173_LAF_7 FP call 0.0 0 0 113 0 hg19 9.0 21995059.0 9.0 21996192.0 0 0 UNEVALUABLE UNEVALUABLE
1173_LAF ANKRD18B intergenic(ENSG00000187186,CCL19) chr9 33548631 chr9 34683646 DUP CALL_1173_LAF_8 FP call 0.001 0 0 3021 12 hg19 9.0 33548629.0 9.0 34683643.0 0 12 UNEVALUABLE UNEVALUABLE
1173_LAF PPFIBP1 CIC chr12 27527240 chr19 42295327 BND CALL_1173_LAF_9 TP call 0.0304 0 0 7 10921 hg19 12.0 27680173.0 19.0 42799479.0 0 7 UNEVALUABLE UNEVALUABLE
1173_LAF intergenic(MAP2K6,KCNJ16) H3-3B chr17 69814476 chr17 75777227 BND CALL_1173_LAF_10 FP call 0.0 0 0 6 0 hg19 17.0 67810617.0 17.0 73773308.0 0 0 UNEVALUABLE UNEVALUABLE
1173_LAF PTBP1 GAMT chr19 801499 chr19 1401376 DUP CALL_1173_LAF_11 TP call 0.7844 0 0 4 859 hg19 19.0 801499.0 19.0 1401375.0 0 4 UNEVALUABLE UNEVALUABLE
1173_LAF intergenic(.,.) MUC3A chrUn_JTFH01000054v1_decoy 2655 chr7 100954676 BND CALL_1173_LAF_12 FP call 0.2808 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
1173_LAF intergenic(.,.) HLA-A chrUn_JTFH01000310v1_decoy 673 chr6 29946351 BND CALL_1173_LAF_13 FP call 0.0003 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
1173_LAF BIRC6 intergenic(FAM98A,CRIM1) chr2 32357432 chr2 33683982 DUPLICATION TRUTH_1173_LAF_14 TRUTH truth 33.0 0 0 1414 1 hg19 2.0 32582500.0 2.0 33909049.0 0 1 UNEVALUABLE UNEVALUABLE
1173_LAF CANX TRIM41 chr5 179679025 chr5 181225581 DUPLICATION TRUTH_1173_LAF_15 TRUTH truth 31.0 0 0 1983 8 hg19 5.0 179106026.0 5.0 180652581.0 0 8 UNEVALUABLE UNEVALUABLE
1173_LAF PPFIBP1 CIC chr12 27527239 chr19 42295325 TRANSLOCATION TRUTH_1173_LAF_16 TRUTH truth 63.0 0 0 7 10934 hg19 12.0 27680172.0 19.0 42799477.0 0 7 UNEVALUABLE UNEVALUABLE
1173_LAF PTBP1 GAMT chr19 801498 chr19 1401375 DUPLICATION TRUTH_1173_LAF_17 TRUTH truth 72.0 0 0 4 859 hg19 19.0 801498.0 19.0 1401374.0 0 4 UNEVALUABLE UNEVALUABLE
1173_QJL RBM6 KPNA4 chr3 50088884 chr3 160531494 DUP CALL_1173_QJL_0 FP call 0.9008 0 0 3 322 hg19 3 50126317.0 3 160249282.0 0 3 UNEVALUABLE UNEVALUABLE
1173_QJL DNAH1 STAB1 chr3 52323773 chr3 52512908 DUP CALL_1173_QJL_1 FP call 0.2808 0 0 441 2634 hg19 3 52357789.0 3 52546924.0 0 441 EVALUABLE BAM_REFUTED
1173_QJL intergenic(VEPH1,SHOX2) PLOD2 chr3 157811445 chr3 146124167 BND CALL_1173_QJL_2 FP call 0.9767 0 0 3 271 hg19 3 157529234.0 3 145841954.0 0 3 UNEVALUABLE UNEVALUABLE
1173_QJL ARRDC3 intergenic(ARRDC3,NR2F1) chr5 91382831 chr5 93140143 DUP CALL_1173_QJL_3 TP call 0.9993 0 0 1111 0 hg19 5 90678648.0 5 92475849.0 0 0 UNEVALUABLE UNEVALUABLE
1173_QJL MCM4 SNTG1 chr8 47970590 chr8 50617083 DUP CALL_1173_QJL_4 FP call 0.0002 0 0 1981 0 hg19 8 48883150.0 8 51529643.0 0 0 UNEVALUABLE UNEVALUABLE
1173_QJL RALGPS1 CFAP157 chr9 127189943 chr9 127714103 DUP CALL_1173_QJL_5 FP call 0.9786 0 0 2 1589 hg19 9 129952222.0 9 130476382.0 0 2 UNEVALUABLE UNEVALUABLE
1173_QJL FOXA1 MTUS2 chr14 37589574 chr13 29481484 BND CALL_1173_QJL_6 FP call 0.9784 0 0 0 2 hg19 14 38058779.0 13 30055621.0 0 0 UNEVALUABLE UNEVALUABLE
1173_QJL NDUFAF8 HGS chr17 81240686 chr17 81696861 DUP CALL_1173_QJL_7 TP call 0.6978 0 0 666 3637 hg19 17 79214486.0 17 79663891.0 0 666 EVALUABLE BAM_REFUTED
1173_QJL ERG TMPRSS2 chr21 38502981 chr21 41496131 DEL CALL_1173_QJL_8 TP call 0.9618 0 0 6 8136 hg19 21 39874905.0 21 42868058.0 0 6 UNEVALUABLE UNEVALUABLE
1173_QJL intergenic(EDA2R,AR) AR chrX 66861524 chrX 67723847 DUP CALL_1173_QJL_9 FP call 0.0007 0 0 0 1158 hg19 X 66081366.0 X 66943689.0 0 0 UNEVALUABLE UNEVALUABLE
1173_QJL ARRDC3 intergenic(ARRDC3,NR2F1) chr5 91382830 chr5 93140142 DUPLICATION TRUTH_1173_QJL_10 TRUTH truth 54.0 0 0 1111 0 hg19 5 90678647.0 5 92475848.0 0 0 UNEVALUABLE UNEVALUABLE
1173_QJL NDUFAF8 HGS chr17 81240685 chr17 81696860 DUPLICATION TRUTH_1173_QJL_11 TRUTH truth 118.0 0 0 666 3638 hg19 17 79214485.0 17 79663890.0 0 666 EVALUABLE BAM_REFUTED
1173_QJL ERG TMPRSS2 chr21 38502980 chr21 41496130 DELETION TRUTH_1173_QJL_12 TRUTH truth 199.0 0 0 6 8146 hg19 21 39874904.0 21 42868057.0 0 6 UNEVALUABLE UNEVALUABLE
659_Dd TACC3 FGFR3 chr4 1737823 chr4 1807103 DUP CALL_659_Dd_0 TP call 0.9283 0 0 617 13954 hg19 4 1739550.0 4 1808830.0 0 617 EVALUABLE BAM_REFUTED
659_Dd HLA-G HLA-B chr6 29830184 chr6 31354876 BND CALL_659_Dd_1 FP call 0.0 0 0 1055 5654 hg19 6 29797961.0 6 31322653.0 0 1055 EVALUABLE BAM_REFUTED
659_Dd TACC3 FGFR3 chr4 1737822 chr4 1807102 DUPLICATION TRUTH_659_Dd_2 TRUTH truth 280.0 0 0 620 13952 hg19 4 1739549.0 4 1808829.0 0 620 EVALUABLE BAM_REFUTED
659_Kh intergenic(STAC,DCLK3) TMEM116 chr3 36701683 chr12 111991850 BND CALL_659_Kh_0 TP call 0.9975 0 0 2 762 hg19 3 36743174.0 12 112429654.0 0 2 UNEVALUABLE UNEVALUABLE
659_Kh PPA2 HDLBP chr4 105465681 chr2 241233847 BND CALL_659_Kh_1 TP_DUP call 0.9892 0 0 0 781 hg19 4 106386838.0 2 242173262.0 0 0 UNEVALUABLE UNEVALUABLE
659_Kh DCANP1 PARP8 chr5 135445080 chr5 50822337 BND CALL_659_Kh_2 TP_DUP call 0.9987 0 0 0 276 hg19 5 134780770.0 5 50118171.0 0 0 UNEVALUABLE UNEVALUABLE
659_Kh HLA-C HLA-A chr6 31269877 chr6 29944697 BND CALL_659_Kh_3 FP call 0.0001 0 0 8842 9212 hg19 6 31237654.0 6 29912474.0 0 8842 EVALUABLE BAM_REFUTED
659_Kh intergenic(CD109,COL12A1) PBOV1 chr6 74325389 chr6 138218206 DUP CALL_659_Kh_4 TP call 0.9969 0 0 7 1418 hg19 6 75035105.0 6 138539343.0 0 7 UNEVALUABLE UNEVALUABLE
659_Kh CYB5R4 intergenic(CD83,JARID2) chr6 83940123 chr6 14346680 BND CALL_659_Kh_5 FP call 0.0576 0 0 692 0 hg19 6 84649842.0 6 14346911.0 0 0 UNEVALUABLE UNEVALUABLE
659_Kh intergenic(TEX30,POGLUT2) COL4A2 chr13 102775098 chr13 110458175 DUP CALL_659_Kh_6 FP call 0.8925 0 0 10 123 hg19 13 103427448.0 13 111110522.0 0 10 UNEVALUABLE UNEVALUABLE
659_Kh intergenic(EPOP,MLLT6) HDLBP chr17 38675409 chr2 241233841 BND CALL_659_Kh_7 TP_DUP call 0.9555 0 0 0 781 hg19 17 36831662.0 2 242173256.0 0 0 UNEVALUABLE UNEVALUABLE
659_Kh TMPRSS2 ERG chr21 41489349 chr21 38492236 BND CALL_659_Kh_8 TP_DUP call 0.9995 0 0 8541 0 hg19 21 42861276.0 21 39864160.0 0 0 UNEVALUABLE UNEVALUABLE
659_Kh intergenic(SHOX,CRLF2) MAGEB6 chrX 1145542 chrX 26194393 BND CALL_659_Kh_9 FP call 0.0002 0 0 8 1992 hg19 X 1245695.0 X 26212510.0 0 8 UNEVALUABLE UNEVALUABLE
659_Kh intergenic(VSIG4,HEPH) AR chrX 66105642 chrX 67544202 DUP CALL_659_Kh_10 FP call 0.0 0 0 0 94 hg19 X 65325484.0 X 66764044.0 0 0 UNEVALUABLE UNEVALUABLE
659_Kh intergenic(.,.) OR8U1 chr11_JH159136v1_alt 187029 chr11 56376384 BND CALL_659_Kh_11 FP call 0.0 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_Kh HDLBP PPA2 chr2 241233845 chr4 105465680 TRANSLOCATION TRUTH_659_Kh_12 TRUTH truth 49.0 0 0 781 0 hg19 2 242173260.0 4 106386837.0 0 0 UNEVALUABLE UNEVALUABLE
659_Kh HDLBP intergenic(EPOP,MLLT6) chr2 241233840 chr17 38675408 TRANSLOCATION TRUTH_659_Kh_13 TRUTH truth 97.0 0 0 781 0 hg19 2 242173255.0 17 36831661.0 0 0 UNEVALUABLE UNEVALUABLE
659_Kh intergenic(CD109,COL12A1) ARFGEF3 chr6 74325388 chr6 138218205 DUPLICATION TRUTH_659_Kh_14 TRUTH truth 134.0 0 0 7 1418 hg19 6 75035104.0 6 138539342.0 0 7 UNEVALUABLE UNEVALUABLE
659_Kh intergenic(STAC,DCLK3) TMEM116 chr3 36701682 chr12 111991849 TRANSLOCATION TRUTH_659_Kh_15 TRUTH truth 88.0 0 0 2 762 hg19 3 36743173.0 12 112429653.0 0 2 UNEVALUABLE UNEVALUABLE
659_Kh PARP8 DCANP1 chr5 50822335 chr5 135445078 INVERSION TRUTH_659_Kh_16 TRUTH truth 113.0 0 0 276 0 hg19 5 50118169.0 5 134780768.0 0 0 UNEVALUABLE UNEVALUABLE
659_Kh ERG TMPRSS2 chr21 38492234 chr21 41489349 INVERSION TRUTH_659_Kh_17 TRUTH truth 347.0 0 0 0 8541 hg19 21 39864158.0 21 42861276.0 0 0 UNEVALUABLE UNEVALUABLE
659_Yr SLC16A1 intergenic(TAFA3,SLC16A1) chr1 112917855 chr1 112844366 BND CALL_659_Yr_0 FP call 0.0002 0 0 2120 11 hg19 1 113460477.0 1 113386988.0 0 11 UNEVALUABLE UNEVALUABLE
659_Yr DYSF HLA-DRB1 chr2 71603591 chr6 32579096 BND CALL_659_Yr_1 FP call 0.0003 0 0 1 2656 hg19 2 71830721.0 6 32546873.0 0 1 UNEVALUABLE UNEVALUABLE
659_Yr intergenic(HLA-A,POLR1H) GRM4 chr6 30029691 chr6 34133491 DUP CALL_659_Yr_2 TP call 0.9348 0 0 0 2200 hg19 6 29997468.0 6 34101268.0 0 0 UNEVALUABLE UNEVALUABLE
659_Yr MUC22 NOTCH4 chr6 31019778 chr6 32223970 DEL CALL_659_Yr_3 FP call 0.0378 0 0 19 642 hg19 6 30987555.0 6 32191747.0 0 19 UNEVALUABLE UNEVALUABLE
659_Yr SAMD3 MYB chr6 130273136 chr6 135216971 DEL CALL_659_Yr_4 FP call 0.0 0 0 0 6111 hg19 6 130594281.0 6 135538109.0 0 0 UNEVALUABLE UNEVALUABLE
659_Yr SHPRH intergenic(SHPRH,GRM1) chr6 145943544 chr6 146008381 DUP CALL_659_Yr_5 FP call 0.6853 0 0 2469 0 hg19 6 146264680.0 6 146329517.0 0 0 UNEVALUABLE UNEVALUABLE
659_Yr KBTBD2 WIPF3 chr7 32869973 chr7 29823186 BND CALL_659_Yr_6 FP call 0.0024 0 0 2845 0 hg19 7 32909585.0 7 29862802.0 0 0 UNEVALUABLE UNEVALUABLE
659_Yr SAMD9L CYP51A1 chr7 93134450 chr7 92095170 BND CALL_659_Yr_7 FP call 0.0057 0 0 2178 587 hg19 7 92763763.0 7 91724484.0 0 587 EVALUABLE BAM_REFUTED
659_Yr intergenic(TRIQK,CIBAR1) HLA-A chr8 93663139 chr6 29942597 BND CALL_659_Yr_8 FP call 0.0002 0 0 0 9812 hg19 8 94675367.0 6 29910374.0 0 0 UNEVALUABLE UNEVALUABLE
659_Yr SMC5 COL15A1 chr9 70322568 chr9 99049857 DEL CALL_659_Yr_9 TP call 0.7802 0 0 4 1386 hg19 9 72937484.0 9 101812139.0 0 4 UNEVALUABLE UNEVALUABLE
659_Yr intergenic(SLC46A2,ZNF883) ZNF483 chr9 112960685 chr9 111542294 BND CALL_659_Yr_10 TP_DUP call 0.9613 0 0 8 3272 hg19 9 115722965.0 9 114304574.0 0 8 UNEVALUABLE UNEVALUABLE
659_Yr KRTAP5-5 KRTAP5-10 chr11 1630111 chr11 71565728 DEL CALL_659_Yr_11 FP call 0.0 0 0 6157 5223 hg19 11 1651341.0 11 71276774.0 0 5223 EVALUABLE BAM_REFUTED
659_Yr CNTN5 KBTBD3 chr11 99662028 chr11 106054435 BND CALL_659_Yr_12 FP call 0.9417 0 0 0 1289 hg19 11 99532759.0 11 105925162.0 0 0 UNEVALUABLE UNEVALUABLE
659_Yr RAB39A STT3A chr11 107954869 chr11 125595924 DUP CALL_659_Yr_13 FP call 0.8119 0 0 5 258 hg19 11 107825595.0 11 125465819.0 0 5 UNEVALUABLE UNEVALUABLE
659_Yr intergenic(ARCN1,PHLDB1) PHLDB1 chr11 118605509 chr11 118632194 BND CALL_659_Yr_14 FP call 0.9825 0 0 3 1418 hg19 11 118476224.0 11 118502911.0 0 3 UNEVALUABLE UNEVALUABLE
659_Yr KRT6B KRT6C chr12 52451665 chr12 52473591 DEL CALL_659_Yr_15 FP call 0.0 3 0 5051 1517 hg19 12 52845449.0 12 52867375.0 3 1517 EVALUABLE BAM_CONFIRMED
659_Yr FGF14 intergenic(TEX29,SOX1) chr13 101713864 chr13 111367393 BND CALL_659_Yr_16 FP call 0.0 0 0 17 0 hg19 13 102366214.0 13 112019740.0 0 0 UNEVALUABLE UNEVALUABLE
659_Yr EFCAB5 intergenic(CCL1,TMEM132E) chr17 30092873 chr17 34430151 BND CALL_659_Yr_17 FP call 0.0052 0 0 401 0 hg19 17 28419891.0 17 32757170.0 0 0 UNEVALUABLE UNEVALUABLE
659_Yr TMEM132E HUNK chr17 34637508 chr21 31952174 BND CALL_659_Yr_18 TP call 0.9994 0 0 3526 3 hg19 17 32964527.0 21 33324486.0 0 3 UNEVALUABLE UNEVALUABLE
659_Yr intergenic(CCL4,TBC1D3B) PDK2 chr17 36119948 chr17 50097513 BND CALL_659_Yr_19 TP call 0.997 0 0 0 696 hg19 17 34447338.0 17 48174877.0 0 0 UNEVALUABLE UNEVALUABLE
659_Yr TNS4 SLC16A6 chr17 40479800 chr17 68284947 DUP CALL_659_Yr_20 TP call 0.5622 0 0 1250 1 hg19 17 38636052.0 17 66281088.0 0 1 UNEVALUABLE UNEVALUABLE
659_Yr ZCCHC3 PELI3 chr20 298868 chr11 66475720 BND CALL_659_Yr_21 TP_DUP call 0.9912 0 0 558 2778 hg19 20 279512.0 11 66243191.0 0 558 EVALUABLE BAM_REFUTED
659_Yr intergenic(ADAMTS5,N6AMT1) PAXBP1 chr21 27928033 chr21 32741621 BND CALL_659_Yr_22 FP call 0.0569 0 0 2 0 hg19 21 29300352.0 21 34113932.0 0 0 UNEVALUABLE UNEVALUABLE
659_Yr intergenic(ADAMTS5,N6AMT1) KRTAP4-5 chr21 28683805 chr17 41149292 BND CALL_659_Yr_23 TP_DUP call 0.2261 0 0 0 7186 hg19 21 30056127.0 17 39305544.0 0 0 UNEVALUABLE UNEVALUABLE
659_Yr intergenic(OLIG1,IFNAR2) KRT32 chr21 33187097 chr17 41460114 BND CALL_659_Yr_24 TP_DUP call 0.5746 0 0 0 871 hg19 21 34559402.0 17 39616366.0 0 0 UNEVALUABLE UNEVALUABLE
659_Yr intergenic(APOL6,APOL5) YAP1 chr22 35694193 chr11 102232915 BND CALL_659_Yr_25 FP call 0.0 0 0 2 0 hg19 22 36090240.0 11 102103646.0 0 0 UNEVALUABLE UNEVALUABLE
659_Yr intergenic(AR,OPHN1) AR chrX 67747192 chrX 67713229 BND CALL_659_Yr_26 FP call 0.0 0 0 4 0 hg19 X 66967034.0 X 66933071.0 0 0 UNEVALUABLE UNEVALUABLE
659_Yr intergenic(HLA-A,POLR1H) GRM4 chr6 30029690 chr6 34133490 DUPLICATION TRUTH_659_Yr_27 TRUTH truth 29.0 0 0 0 2200 hg19 6 29997467.0 6 34101267.0 0 0 UNEVALUABLE UNEVALUABLE
659_Yr SMC5 COL15A1 chr9 70322567 chr9 99049856 DELETION TRUTH_659_Yr_28 TRUTH truth 78.0 0 0 4 1386 hg19 9 72937483.0 9 101812138.0 0 4 UNEVALUABLE UNEVALUABLE
659_Yr ZNF483 intergenic(SLC46A2,ZNF883) chr9 111542290 chr9 112960687 INVERSION TRUTH_659_Yr_29 TRUTH truth 64.0 0 0 3281 8 hg19 9 114304570.0 9 115722967.0 0 8 UNEVALUABLE UNEVALUABLE
659_Yr PELI3 ZCCHC3 chr11 66475719 chr20 298867 TRANSLOCATION TRUTH_659_Yr_30 TRUTH truth 86.0 0 0 2776 558 hg19 11 66243190.0 20 279511.0 0 558 EVALUABLE BAM_REFUTED
659_Yr OR10G4 PRDM10 chr11 124015255 chr11 129918629 INVERSION TRUTH_659_Yr_31 TRUTH truth 44.0 0 0 1255 1234 hg19 11 123885962.0 11 129788524.0 0 1234 EVALUABLE BAM_REFUTED
659_Yr TMEM132E HUNK chr17 34637507 chr21 31952171 TRANSLOCATION TRUTH_659_Yr_32 TRUTH truth 698.0 0 0 3521 3 hg19 17 32964526.0 21 33324483.0 0 3 UNEVALUABLE UNEVALUABLE
659_Yr intergenic(CCL4,TBC1D3B) PDK2 chr17 36119946 chr17 50097511 INVERSION TRUTH_659_Yr_33 TRUTH truth 94.0 0 0 0 696 hg19 17 34447336.0 17 48174875.0 0 0 UNEVALUABLE UNEVALUABLE
659_Yr TNS4 SLC16A6 chr17 40479799 chr17 68284946 DUPLICATION TRUTH_659_Yr_34 TRUTH truth 56.0 0 0 1250 1 hg19 17 38636051.0 17 66281087.0 0 1 UNEVALUABLE UNEVALUABLE
659_Yr KRTAP4-5 intergenic(ADAMTS5,N6AMT1) chr17 41149291 chr21 28683804 TRANSLOCATION TRUTH_659_Yr_35 TRUTH truth 879.0 0 0 7184 0 hg19 17 39305543.0 21 30056126.0 0 0 UNEVALUABLE UNEVALUABLE
659_Yr KRT32 intergenic(OLIG1,IFNAR2) chr17 41460113 chr21 33187096 TRANSLOCATION TRUTH_659_Yr_36 TRUTH truth 26.0 0 0 871 0 hg19 17 39616365.0 21 34559401.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4v intergenic(UBE4B,KIF1B) AR chr1 10183374 chrX 67701812 BND CALL_659_b4v_0 FP call 0.0001 0 0 15 2 hg19 1 10243432.0 X 66921654.0 0 2 UNEVALUABLE UNEVALUABLE
659_b4v MAGI3 NRG1 chr1 113623488 chr8 32640621 BND CALL_659_b4v_1 FP call 0.0 0 0 266 9 hg19 1 114166110.0 8 32498140.0 0 9 UNEVALUABLE UNEVALUABLE
659_b4v DNMT3A intergenic(ENSG00000289503,KCNH5) chr2 25231945 chr14 62452325 BND CALL_659_b4v_2 FP call 0.0 0 0 2 0 hg19 2 25454814.0 14 62919043.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4v intergenic(CUL3,CCDC195) BCL2 chr2 224679063 chr18 63128464 BND CALL_659_b4v_3 FP call 0.0 0 0 5 9790 hg19 2 225543780.0 18 60795697.0 0 5 UNEVALUABLE UNEVALUABLE
659_b4v intergenic(PROK2,RYBP) AR chr3 72321783 chrX 67695840 BND CALL_659_b4v_4 FP call 0.0 0 0 0 2760 hg19 3 72370934.0 X 66915682.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4v GRID2 TP63 chr4 93782893 chr3 189880200 BND CALL_659_b4v_5 FP call 0.0 0 0 0 5414 hg19 4 94704044.0 3 189597989.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4v intergenic(LRBA,RPS3A) QKI chr4 151091481 chr6 163574357 BND CALL_659_b4v_6 FP call 0.0006 0 0 10 0 hg19 4 152012633.0 6 163995389.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4v GLRB EXOC6 chr4 157136943 chr10 92940781 BND CALL_659_b4v_7 FP call 0.0001 0 0 547 331 hg19 4 158058095.0 10 94700538.0 0 331 EVALUABLE BAM_REFUTED
659_b4v intergenic(FGF10,MRPS30) QKI chr5 44576090 chr6 163574361 BND CALL_659_b4v_8 FP call 0.0077 0 0 0 0 hg19 5 44576192.0 6 163995393.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4v intergenic(ISOC1,ADAMTS19) NRG1 chr5 129116683 chr8 32640621 BND CALL_659_b4v_9 FP call 0.0 0 0 10 9 hg19 5 128452376.0 8 32498140.0 0 9 UNEVALUABLE UNEVALUABLE
659_b4v NEDD9 POLE chr6 11294136 chr12 132624006 BND CALL_659_b4v_10 FP call 0.0 0 0 2 51 hg19 6 11294369.0 12 133200592.0 0 2 UNEVALUABLE UNEVALUABLE
659_b4v HLA-F BPIFC chr6 29722895 chr22 32424587 BND CALL_659_b4v_11 FP call 0.0 0 0 113 6 hg19 6 29690672.0 22 32820574.0 0 6 UNEVALUABLE UNEVALUABLE
659_b4v TAX1BP1 BRAF chr7 27792641 chr7 140787960 BND CALL_659_b4v_12 TP call 0.2177 0 0 868 7221 hg19 7 27832260.0 7 140487760.0 0 868 EVALUABLE BAM_REFUTED
659_b4v intergenic(XRCC2,ACTR3B) BCL2 chr7 152701779 chr18 63128464 BND CALL_659_b4v_13 FP call 0.0001 0 0 24 9790 hg19 7 152398864.0 18 60795697.0 0 24 EVALUABLE BAM_REFUTED
659_b4v intergenic(MYOM2,CSMD1) ETV6 chr8 2857746 chr12 11814431 BND CALL_659_b4v_14 FP call 0.0 0 0 11 1 hg19 8 2715268.0 12 11967365.0 0 1 UNEVALUABLE UNEVALUABLE
659_b4v NRG1 SLA chr8 32640620 chr8 133055407 DUP CALL_659_b4v_15 FP call 0.0 0 0 9 16 hg19 8 32498139.0 8 134067652.0 0 9 UNEVALUABLE UNEVALUABLE
659_b4v NRG1 SUSD5 chr8 32640621 chr3 33206414 BND CALL_659_b4v_16 FP call 0.0 0 0 9 17 hg19 8 32498140.0 3 33247906.0 0 9 UNEVALUABLE UNEVALUABLE
659_b4v NRG1 intergenic(POC5,SV2C) chr8 32640621 chr5 75752173 BND CALL_659_b4v_17 FP call 0.0 0 0 9 1 hg19 8 32498140.0 5 75047998.0 0 1 UNEVALUABLE UNEVALUABLE
659_b4v NRG1 SBF2 chr8 32640621 chr11 10286195 BND CALL_659_b4v_18 FP call 0.0 0 0 9 3 hg19 8 32498140.0 11 10307742.0 0 3 UNEVALUABLE UNEVALUABLE
659_b4v NRG1 intergenic(NEDD4,RFX7) chr8 32640621 chr15 55997485 BND CALL_659_b4v_19 FP call 0.0 0 0 9 1 hg19 8 32498140.0 15 56289683.0 0 1 UNEVALUABLE UNEVALUABLE
659_b4v NRG1 intergenic(PROKR2,GPCPD1) chr8 32640621 chr20 5371260 BND CALL_659_b4v_20 FP call 0.0 0 0 9 1 hg19 8 32498140.0 20 5351906.0 0 1 UNEVALUABLE UNEVALUABLE
659_b4v SNTG1 ABCA9 chr8 50303531 chr17 69026457 BND CALL_659_b4v_21 FP call 0.0001 0 0 0 670 hg19 8 51216091.0 17 67022598.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4v PRDM14 intergenic(CRACDL,TSGA10) chr8 70058839 chr2 98943206 BND CALL_659_b4v_22 FP call 0.0 0 0 625 7 hg19 8 70971074.0 2 99559669.0 0 7 UNEVALUABLE UNEVALUABLE
659_b4v intergenic(ZNF25,ZNF33A) TP63 chr10 38005413 chr3 189880200 BND CALL_659_b4v_23 FP call 0.0001 0 0 15 5414 hg19 10 38294341.0 3 189597989.0 0 15 UNEVALUABLE UNEVALUABLE
659_b4v TUBA1C DNAH1 chr12 49210190 chr3 52357692 BND CALL_659_b4v_24 FP call 0.0 0 0 12 1396 hg19 12 49603973.0 3 52391708.0 0 12 UNEVALUABLE UNEVALUABLE
659_b4v intergenic(AP5M1,NAA30) TBC1D31 chr14 57350851 chr8 123126154 BND CALL_659_b4v_25 FP call 0.0001 0 0 14 2700 hg19 14 57817569.0 8 124138394.0 0 14 UNEVALUABLE UNEVALUABLE
659_b4v RTN1 GID4 chr14 59793672 chr17 18039471 BND CALL_659_b4v_26 FP call 0.0001 0 0 2 4261 hg19 14 60260390.0 17 17942785.0 0 2 UNEVALUABLE UNEVALUABLE
659_b4v DPH6 CDK6 chr15 35311280 chr7 92614167 BND CALL_659_b4v_27 FP call 0.0 0 0 15 5 hg19 15 35603481.0 7 92243481.0 0 5 UNEVALUABLE UNEVALUABLE
659_b4v intergenic(TOB1,SPAG9) NTRK3 chr17 50940863 chr15 87987526 BND CALL_659_b4v_28 FP call 0.0001 0 0 2 0 hg19 17 49018224.0 15 88530757.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4v intergenic(SETBP1,SLC14A2) SETBP1 chr18 45138580 chr18 45067860 BND CALL_659_b4v_29 FP call 0.0 0 0 0 0 hg19 18 42718545.0 18 42647825.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4v TCF4 EWSR1 chr18 55273112 chr22 29286789 BND CALL_659_b4v_30 FP call 0.0 0 0 0 1958 hg19 18 52940343.0 22 29682778.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4v LARGE1 KIAA0513 chr22 33560687 chr16 85078932 BND CALL_659_b4v_31 FP call 0.0 0 0 12 1101 hg19 22 33956673.0 16 85112538.0 0 12 UNEVALUABLE UNEVALUABLE
659_b4v TRMU PPCDC chr22 46352129 chr15 75042741 BND CALL_659_b4v_32 FP call 0.0 0 0 750 3 hg19 22 46748026.0 15 75335082.0 0 3 UNEVALUABLE UNEVALUABLE
659_b4v MOV10L1 GIMAP2 chr22 50133524 chr7 150687061 BND CALL_659_b4v_33 FP call 0.0 0 0 249 295 hg19 22 50571953.0 7 150384149.0 0 249 EVALUABLE BAM_REFUTED
659_b4v CRLF2 intergenic(OTOL1,SI) chrX 1198677 chr3 164252078 BND CALL_659_b4v_34 FP call 0.0 0 0 3260 0 hg19 X 1317534.0 3 163969866.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4v intergenic(TGIF2LX,PABPC5) BCL2 chrX 91003880 chr18 63128464 BND CALL_659_b4v_35 FP call 0.0 0 0 4 9790 hg19 X 90258879.0 18 60795697.0 0 4 UNEVALUABLE UNEVALUABLE
659_b4v intergenic(UBE2NL,SPANXN1) NRG1 chrX 144189640 chr8 32640621 BND CALL_659_b4v_36 FP call 0.0 0 0 0 9 hg19 X 143272746.0 8 32498140.0 0 0 UNEVALUABLE UNEVALUABLE
659_b4v TAX1BP1 BRAF chr7 27792545 chr7 140787899 INVERSION TRUTH_659_b4v_37 TRUTH truth 120.0 0 0 942 7336 hg19 7 27832164.0 7 140487699.0 0 942 EVALUABLE BAM_REFUTED
659_bDa intergenic(ANKRD13C,CTH) HFM1 chr1 70362772 chr1 91319101 BND CALL_659_bDa_0 FP call 0.0241 0 0 4 716 hg19 1 70828455.0 1 91784658.0 0 4 UNEVALUABLE UNEVALUABLE
659_bDa intergenic(ZNF644,HFM1) HFM1 chr1 91191637 chr1 91262252 DUP CALL_659_bDa_1 FP call 0.0002 0 0 3 479 hg19 1 91657194.0 1 91727809.0 0 3 UNEVALUABLE UNEVALUABLE
659_bDa intergenic(SEC16B,RASAL2) SUCO chr1 178076647 chr1 172551534 BND CALL_659_bDa_2 FP call 0.9798 0 0 1 359 hg19 1 178045782.0 1 172520674.0 0 1 UNEVALUABLE UNEVALUABLE
659_bDa C7orf50 intergenic(NPY,PALS2) chr7 1092274 chr7 24407727 DEL CALL_659_bDa_3 FP call 0.0324 0 0 2774 0 hg19 7 1131910.0 7 24447346.0 0 0 UNEVALUABLE UNEVALUABLE
659_bDa intergenic(RUNX1T1,TRIQK) NBN chr8 92151920 chr8 89944871 BND CALL_659_bDa_4 FP call 0.0004 0 0 4 0 hg19 8 93164148.0 8 90957099.0 0 0 UNEVALUABLE UNEVALUABLE
659_bDa intergenic(SLC28A3,NTRK2) NTRK2 chr9 84603914 chr9 84920808 DEL CALL_659_bDa_5 FP call 0.0 0 0 0 0 hg19 9 87218829.0 9 87535723.0 0 0 UNEVALUABLE UNEVALUABLE
659_bDa ZNF367 DNAH2 chr9 96387042 chr17 7723669 BND CALL_659_bDa_6 FP call 0.9991 0 0 0 398 hg19 9 99149324.0 17 7626987.0 0 0 UNEVALUABLE UNEVALUABLE
659_bDa ZNF782 NUTM2G chr9 96846787 chr9 96932265 BND CALL_659_bDa_7 FP call 0.0385 0 0 0 3670 hg19 9 99609069.0 9 99694547.0 0 0 UNEVALUABLE UNEVALUABLE
659_bDa intergenic(ENSG00000285082,BRINP1) CHD3 chr9 118232892 chr17 7895140 BND CALL_659_bDa_8 FP call 0.0016 0 0 0 2119 hg19 9 120995170.0 17 7798458.0 0 0 UNEVALUABLE UNEVALUABLE
659_bDa intergenic(NOTCH1,EGFL7) SRCIN1 chr9 136633074 chr17 38551270 BND CALL_659_bDa_9 FP call 0.0003 0 0 0 2198 hg19 9 139527526.0 17 36707506.0 0 0 UNEVALUABLE UNEVALUABLE
659_bDa NSMF ANKFN1 chr9 137457500 chr17 55903620 BND CALL_659_bDa_10 TP call 0.9877 0 0 2486 0 hg19 9 140351952.0 17 53980981.0 0 0 UNEVALUABLE UNEVALUABLE
659_bDa RAB30 KMT2A chr11 82992833 chr11 118523050 DEL CALL_659_bDa_11 FP call 0.9961 0 0 4 7 hg19 11 82703875.0 11 118393765.0 0 4 UNEVALUABLE UNEVALUABLE
659_bDa SLC48A1 LIMA1 chr12 47778521 chr12 50222037 DEL CALL_659_bDa_12 TP call 0.9912 0 0 398 1614 hg19 12 48172304.0 12 50615820.0 0 398 EVALUABLE BAM_REFUTED
659_bDa ZNF641 C1QL4 chr12 48340306 chr12 49336023 BND CALL_659_bDa_13 TP call 0.9426 0 0 3107 2678 hg19 12 48734089.0 12 49729806.0 0 2678 EVALUABLE BAM_REFUTED
659_bDa DHH intergenic(FBXO33,LRFN5) chr12 49091299 chr14 41570457 BND CALL_659_bDa_14 TP call 0.9913 0 0 1677 0 hg19 12 49485082.0 14 42039660.0 0 0 UNEVALUABLE UNEVALUABLE
659_bDa GNS XPOT chr12 64744824 chr12 64439330 BND CALL_659_bDa_15 TP_DUP call 0.9964 0 0 198 355 hg19 12 65138604.0 12 64833110.0 0 198 EVALUABLE BAM_REFUTED
659_bDa intergenic(STXBP6,NOVA1) NOVA1 chr14 25638715 chr14 26448893 DEL CALL_659_bDa_16 TP call 0.9732 0 0 0 2086 hg19 14 26107921.0 14 26918099.0 0 0 UNEVALUABLE UNEVALUABLE
659_bDa intergenic(FOXG1,PRKD1) RAPGEF3 chr14 29089806 chr12 47740309 BND CALL_659_bDa_17 FP call 0.9258 0 0 1 2175 hg19 14 29559012.0 12 48134092.0 0 1 UNEVALUABLE UNEVALUABLE
659_bDa SSH2 AKAP1 chr17 29929696 chr17 57120296 DEL CALL_659_bDa_18 FP call 0.0914 0 0 633 554 hg19 17 28256714.0 17 55197657.0 0 554 EVALUABLE BAM_REFUTED
659_bDa BLMH MAPT chr17 30274147 chr17 45958912 DEL CALL_659_bDa_19 TP call 0.9559 0 0 873 0 hg19 17 28601165.0 17 44036278.0 0 0 UNEVALUABLE UNEVALUABLE
659_bDa intergenic(HNF1B,TBC1D3K) WNK2 chr17 37746503 chr9 93259378 BND CALL_659_bDa_20 TP_DUP call 0.9995 0 0 1 3394 hg19 17 36106494.0 9 96021660.0 0 1 UNEVALUABLE UNEVALUABLE
659_bDa intergenic(HEXIM1,HEXIM2) GNAQ chr17 45157128 chr9 77720183 BND CALL_659_bDa_21 FP call 0.0 0 0 14 1 hg19 17 43234495.0 9 80335099.0 0 1 UNEVALUABLE UNEVALUABLE
659_bDa SCRN2 intergenic(TBX2,TBX4) chr17 47840769 chr17 61412882 DEL CALL_659_bDa_22 FP call 0.0113 0 0 1706 2088 hg19 17 45918135.0 17 59490243.0 0 1706 EVALUABLE BAM_REFUTED
659_bDa intergenic(CA10,KIF2B) CLTC chr17 52526358 chr17 59660547 DUP CALL_659_bDa_23 TP call 0.8701 0 0 24 698 hg19 17 50603718.0 17 57737908.0 0 24 EVALUABLE BAM_REFUTED
659_bDa STXBP4 SGK1 chr17 55047127 chr6 134185635 BND CALL_659_bDa_24 FP call 0.0 0 0 202 0 hg19 17 53124488.0 6 134506773.0 0 0 UNEVALUABLE UNEVALUABLE
659_bDa SMIM36 LGALS3BP chr17 55500678 chr17 78972072 DEL CALL_659_bDa_25 TP call 0.9619 0 0 1 3855 hg19 17 53578039.0 17 76968154.0 0 1 UNEVALUABLE UNEVALUABLE
659_bDa PPM1D CCT6B chr17 60665997 chr17 34938320 BND CALL_659_bDa_26 FP call 0.1327 0 0 3 9 hg19 17 58743358.0 17 33265339.0 0 3 UNEVALUABLE UNEVALUABLE
659_bDa ACE RAB37 chr17 63497263 chr17 74721212 DUP CALL_659_bDa_27 TP call 0.3171 0 0 2226 4 hg19 17 61574624.0 17 72717351.0 0 4 UNEVALUABLE UNEVALUABLE
659_bDa ARSG PLCD3 chr17 68364559 chr17 45115432 BND CALL_659_bDa_28 FP call 0.9893 0 0 28 1870 hg19 17 66360700.0 17 43192799.0 0 28 EVALUABLE BAM_REFUTED
659_bDa WNK2 intergenic(HNF1B,TBC1D3K) chr9 93259376 chr17 37746502 TRANSLOCATION TRUTH_659_bDa_29 TRUTH truth 286.0 0 0 3394 1 hg19 9 96021658.0 17 36106493.0 0 1 UNEVALUABLE UNEVALUABLE
659_bDa MVB12B CERCAM chr9 126477010 chr9 128434122 DUPLICATION TRUTH_659_bDa_30 TRUTH truth 105.0 0 0 15 1769 hg19 9 129239289.0 9 131196401.0 0 15 UNEVALUABLE UNEVALUABLE
659_bDa NSMF ANKFN1 chr9 137457499 chr17 55903619 TRANSLOCATION TRUTH_659_bDa_31 TRUTH truth 46.0 0 0 2485 0 hg19 9 140351951.0 17 53980980.0 0 0 UNEVALUABLE UNEVALUABLE
659_bDa intergenic(ENDOU,RAPGEF3) LIMA1 chr12 47733404 chr12 50222048 DELETION TRUTH_659_bDa_32 TRUTH truth 28.0 0 0 0 1638 hg19 12 48127187.0 12 50615831.0 0 0 UNEVALUABLE UNEVALUABLE
659_bDa SLC48A1 LIMA1 chr12 47778507 chr12 50222073 DELETION TRUTH_659_bDa_33 TRUTH truth 32.0 0 0 321 1708 hg19 12 48172290.0 12 50615856.0 0 321 EVALUABLE BAM_REFUTED
659_bDa ZNF641 C1QL4 chr12 48340304 chr12 49336021 INVERSION TRUTH_659_bDa_34 TRUTH truth 117.0 0 0 3099 2678 hg19 12 48734087.0 12 49729804.0 0 2678 EVALUABLE BAM_REFUTED
659_bDa DHH intergenic(FBXO33,LRFN5) chr12 49091298 chr14 41570456 TRANSLOCATION TRUTH_659_bDa_35 TRUTH truth 127.0 0 0 1677 0 hg19 12 49485081.0 14 42039659.0 0 0 UNEVALUABLE UNEVALUABLE
659_bDa XPOT GNS chr12 64439327 chr12 64744823 INVERSION TRUTH_659_bDa_36 TRUTH truth 63.0 0 0 355 198 hg19 12 64833107.0 12 65138603.0 0 198 EVALUABLE BAM_REFUTED
659_bDa intergenic(STXBP6,NOVA1) NOVA1 chr14 25638714 chr14 26448892 DELETION TRUTH_659_bDa_37 TRUTH truth 37.0 0 0 0 2093 hg19 14 26107920.0 14 26918098.0 0 0 UNEVALUABLE UNEVALUABLE
659_bDa BLMH MAPT chr17 30274146 chr17 45958911 DELETION TRUTH_659_bDa_38 TRUTH truth 64.0 0 0 873 0 hg19 17 28601164.0 17 44036277.0 0 0 UNEVALUABLE UNEVALUABLE
659_bDa intergenic(CA10,KIF2B) CLTC chr17 52526357 chr17 59660546 DUPLICATION TRUTH_659_bDa_39 TRUTH truth 43.0 0 0 24 698 hg19 17 50603717.0 17 57737907.0 0 24 EVALUABLE BAM_REFUTED
659_bDa SMIM36 LGALS3BP chr17 55500677 chr17 78972071 DELETION TRUTH_659_bDa_40 TRUTH truth 64.0 0 0 1 3853 hg19 17 53578038.0 17 76968153.0 0 1 UNEVALUABLE UNEVALUABLE
659_bDa ACE RAB37 chr17 63497262 chr17 74721211 DUPLICATION TRUTH_659_bDa_41 TRUTH truth 93.0 0 0 2227 4 hg19 17 61574623.0 17 72717350.0 0 4 UNEVALUABLE UNEVALUABLE
659_bHx intergenic(ENPP3,ENPP1) SHPRH chr6 131777233 chr6 145921206 BND CALL_659_bHx_0 TP call 0.9535 0 0 0 880 hg19 6 132098373.0 6 146242342.0 0 0 UNEVALUABLE UNEVALUABLE
659_bHx SLC2A12 CD63 chr6 134010734 chr12 55725605 BND CALL_659_bHx_1 FP call 0.6357 0 0 1 993 hg19 6 134331872.0 12 56119389.0 0 1 UNEVALUABLE UNEVALUABLE
659_bHx AHI1 RGS17 chr6 135428728 chr6 153007733 DEL CALL_659_bHx_2 FP call 0.2226 0 0 646 0 hg19 6 135749866.0 6 153328868.0 0 0 UNEVALUABLE UNEVALUABLE
659_bHx NHSL1 ESR1 chr6 138468382 chr6 152129483 BND CALL_659_bHx_3 FP call 0.0089 0 0 0 1 hg19 6 138789519.0 6 152450618.0 0 0 UNEVALUABLE UNEVALUABLE
659_bHx SHPRH intergenic(TFB1M,NOX3) chr6 145947590 chr6 155357884 DUP CALL_659_bHx_4 FP call 0.0465 0 0 853 1 hg19 6 146268726.0 6 155679018.0 0 1 UNEVALUABLE UNEVALUABLE
659_bHx STXBP5 NOL11 chr6 147284551 chr17 67726600 BND CALL_659_bHx_5 TP call 0.9865 0 0 0 680 hg19 6 147605687.0 17 65722716.0 0 0 UNEVALUABLE UNEVALUABLE
659_bHx SASH1 PLEKHG1 chr6 148380943 chr6 150841193 DEL CALL_659_bHx_6 FP call 0.092 0 0 0 654 hg19 6 148702079.0 6 151162329.0 0 0 UNEVALUABLE UNEVALUABLE
659_bHx intergenic(CNKSR3,SCAF8) PTPRB chr6 154732807 chr12 70524489 BND CALL_659_bHx_7 TP call 0.8543 0 0 122 670 hg19 6 155053941.0 12 70918269.0 0 122 EVALUABLE BAM_REFUTED
659_bHx ARID1B FNDC1 chr6 156970581 chr6 159234075 DEL CALL_659_bHx_8 TP call 0.9837 0 0 5 3879 hg19 6 157291715.0 6 159655107.0 0 5 UNEVALUABLE UNEVALUABLE
659_bHx intergenic(SORCS1,XPNPEP1) PLA2R1 chr10 108724741 chr2 159987230 BND CALL_659_bHx_9 TP_DUP call 0.1607 0 0 0 541 hg19 10 110484499.0 2 160843741.0 0 0 UNEVALUABLE UNEVALUABLE
659_bHx intergenic(FGFR2,ATE1) PLA2R1 chr10 121610814 chr2 159987227 BND CALL_659_bHx_10 FP call 0.0041 0 0 0 541 hg19 10 123370328.0 2 160843738.0 0 0 UNEVALUABLE UNEVALUABLE
659_bHx intergenic(MKI67,MGMT) MAGEL2 chr10 128441729 chr15 23646945 BND CALL_659_bHx_11 FP call 0.001 0 0 3 6744 hg19 10 130239993.0 15 23892092.0 0 3 UNEVALUABLE UNEVALUABLE
659_bHx intergenic(OR5A1,OR4D6) OR4D6 chr11 59455808 chr11 59457042 DUP CALL_659_bHx_12 TP call 0.9952 0 0 4 1382 hg19 11 59223281.0 11 59224515.0 0 4 UNEVALUABLE UNEVALUABLE
659_bHx intergenic(PEX5,ACSM4) ETV6 chr12 7251282 chr12 11794688 BND CALL_659_bHx_13 FP call 0.1058 0 0 0 1 hg19 12 7403878.0 12 11947622.0 0 0 UNEVALUABLE UNEVALUABLE
659_bHx intergenic(OR10P1,METTL7B) ITGA5 chr12 55662311 chr12 54396330 BND CALL_659_bHx_14 TP_DUP call 0.9418 0 0 13 332 hg19 12 56056095.0 12 54790114.0 0 13 UNEVALUABLE UNEVALUABLE
659_bHx intergenic(SLC16A7,TAFA2) STXBP5 chr12 60412448 chr6 147316283 BND CALL_659_bHx_15 FP call 0.0251 0 0 5 963 hg19 12 60806229.0 6 147637419.0 0 5 UNEVALUABLE UNEVALUABLE
659_bHx intergenic(AVPR1A,DPY19L2) CPM chr12 63181447 chr12 68867016 BND CALL_659_bHx_16 FP call 0.0024 0 0 0 566 hg19 12 63575227.0 12 69260796.0 0 0 UNEVALUABLE UNEVALUABLE
659_bHx SRGAP1 MSRB3 chr12 64097321 chr12 65427406 DEL CALL_659_bHx_17 TP call 0.9226 0 0 791 0 hg19 12 64491101.0 12 65821186.0 0 0 UNEVALUABLE UNEVALUABLE
659_bHx intergenic(MSRB3,HMGA2) MDM2 chr12 65636127 chr12 68809067 DEL CALL_659_bHx_18 FP call 0.0162 0 0 0 3690 hg19 12 66029907.0 12 69202847.0 0 0 UNEVALUABLE UNEVALUABLE
659_bHx MDM1 ESR1 chr12 68326713 chr6 151852925 BND CALL_659_bHx_19 FP call 0.0046 0 0 2540 2 hg19 12 68720493.0 6 152174060.0 0 2 UNEVALUABLE UNEVALUABLE
659_bHx MDM2 intergenic(TMTC2,SLC6A15) chr12 68828906 chr12 83273855 DEL CALL_659_bHx_20 FP call 0.0001 0 0 1716 4 hg19 12 69222686.0 12 83667634.0 0 4 UNEVALUABLE UNEVALUABLE
659_bHx PTPRR TMTC2 chr12 70892789 chr12 82940475 BND CALL_659_bHx_21 TP call 0.9877 0 0 1251 14 hg19 12 71286569.0 12 83334254.0 0 14 UNEVALUABLE UNEVALUABLE
659_bHx LGR5 intergenic(LGR5,ZFC3H1) chr12 71585853 chr12 71594113 BND CALL_659_bHx_22 FP call 0.5258 0 0 0 3 hg19 12 71979633.0 12 71987893.0 0 0 UNEVALUABLE UNEVALUABLE
659_bHx LGR5 intergenic(SLC16A7,TAFA2) chr12 71586299 chr12 60293428 BND CALL_659_bHx_23 FP call 0.9952 0 0 5 0 hg19 12 71980079.0 12 60687209.0 0 0 UNEVALUABLE UNEVALUABLE
659_bHx STX2 PTPN11 chr12 130827206 chr12 112507342 BND CALL_659_bHx_24 FP call 0.0 0 0 397 0 hg19 12 131311751.0 12 112945146.0 0 0 UNEVALUABLE UNEVALUABLE
659_bHx ITGA11 RAB37 chr15 68386695 chr17 74703050 BND CALL_659_bHx_25 FP call 0.0019 0 0 0 446 hg19 15 68679034.0 17 72699189.0 0 0 UNEVALUABLE UNEVALUABLE
659_bHx RAB11FIP4 MAP3K12 chr17 31517685 chr12 53493028 BND CALL_659_bHx_26 FP call 0.018 0 0 801 2 hg19 17 29844703.0 12 53886812.0 0 2 UNEVALUABLE UNEVALUABLE
659_bHx ENSG00000262660 intergenic(LZTS1,GFRA2) chr17 81704375 chr8 20992144 BND CALL_659_bHx_27 TP_DUP call 0.0052 0 0 1265 1 hg19 17 79671405.0 8 20849655.0 0 1 UNEVALUABLE UNEVALUABLE
659_bHx PTPRR TMTC2 chr12 70892787 chr12 82940473 INVERSION TRUTH_659_bHx_28 TRUTH truth 266.0 0 0 1251 14 hg19 12 71286567.0 12 83334252.0 0 14 UNEVALUABLE UNEVALUABLE
659_bHx intergenic(ENPP3,ENPP1) SHPRH chr6 131777231 chr6 145921204 INVERSION TRUTH_659_bHx_29 TRUTH truth 74.0 0 0 0 880 hg19 6 132098371.0 6 146242340.0 0 0 UNEVALUABLE UNEVALUABLE
659_bHx PLA2R1 intergenic(SORCS1,XPNPEP1) chr2 159987226 chr10 108724740 TRANSLOCATION TRUTH_659_bHx_30 TRUTH truth 27.0 0 0 541 0 hg19 2 160843737.0 10 110484498.0 0 0 UNEVALUABLE UNEVALUABLE
659_bHx intergenic(CNKSR3,SCAF8) PTPRB chr6 154732806 chr12 70524488 TRANSLOCATION TRUTH_659_bHx_31 TRUTH truth 30.0 0 0 119 670 hg19 6 155053940.0 12 70918268.0 0 119 EVALUABLE BAM_REFUTED
659_bHx ARID1B FNDC1 chr6 156970580 chr6 159234074 DELETION TRUTH_659_bHx_32 TRUTH truth 154.0 0 0 5 3881 hg19 6 157291714.0 6 159655106.0 0 5 UNEVALUABLE UNEVALUABLE
659_bHx SRGAP1 MSRB3 chr12 64097320 chr12 65427405 DELETION TRUTH_659_bHx_33 TRUTH truth 67.0 0 0 791 0 hg19 12 64491100.0 12 65821185.0 0 0 UNEVALUABLE UNEVALUABLE
659_bHx ITGA5 intergenic(OR10P1,METTL7B) chr12 54396329 chr12 55662310 INVERSION TRUTH_659_bHx_34 TRUTH truth 25.0 0 0 332 13 hg19 12 54790113.0 12 56056094.0 0 13 UNEVALUABLE UNEVALUABLE
659_bHx STXBP5 NOL11 chr6 147284550 chr17 67726599 TRANSLOCATION TRUTH_659_bHx_35 TRUTH truth 24.0 0 0 0 680 hg19 6 147605686.0 17 65722715.0 0 0 UNEVALUABLE UNEVALUABLE
659_bHx intergenic(LZTS1,GFRA2) ENSG00000262660 chr8 20992143 chr17 81704374 TRANSLOCATION TRUTH_659_bHx_36 TRUTH truth 22.0 0 0 1 1265 hg19 8 20849654.0 17 79671404.0 0 1 UNEVALUABLE UNEVALUABLE
659_bHx ITGA7 intergenic(ATP23,LRIG3) chr12 55700935 chr12 58519250 INVERSION TRUTH_659_bHx_37 TRUTH truth 192.0 0 0 1411 5 hg19 12 56094719.0 12 58913033.0 0 5 UNEVALUABLE UNEVALUABLE
659_bHx intergenic(OR5A1,OR4D6) OR4D6 chr11 59455807 chr11 59457041 DUPLICATION TRUTH_659_bHx_38 TRUTH truth 89.0 0 0 4 1382 hg19 11 59223280.0 11 59224514.0 0 4 UNEVALUABLE UNEVALUABLE
659_bT3 intergenic(EPHA2,ARHGEF19) ARHGEF19 chr1 16163617 chr1 16202494 DUP CALL_659_bT3_0 TP call 0.9973 0 0 14 1079 hg19 1 16490112.0 1 16528989.0 0 14 UNEVALUABLE UNEVALUABLE
659_bT3 VPS45 RPRD2 chr1 150073585 chr1 150471654 BND CALL_659_bT3_1 FP call 0.7606 0 0 2 3089 hg19 1 150045656.0 1 150444130.0 0 2 UNEVALUABLE UNEVALUABLE
659_bT3 RPRD2 intergenic(RPRD2,TARS2) chr1 150471290 chr1 150479240 BND CALL_659_bT3_2 FP call 0.0029 0 0 2915 35 hg19 1 150443766.0 1 150451716.0 0 35 EVALUABLE BAM_REFUTED
659_bT3 CRNN intergenic(FLG2,CRNN) chr1 152410808 chr1 152408603 BND CALL_659_bT3_3 TP_DUP call 0.9967 0 0 2550 4 hg19 1 152383284.0 1 152381079.0 0 4 UNEVALUABLE UNEVALUABLE
659_bT3 NMNAT2 FGFR1 chr1 183342417 chr8 38465052 BND CALL_659_bT3_4 TP call 0.904 0 0 1 9634 hg19 1 183311552.0 8 38322570.0 0 1 UNEVALUABLE UNEVALUABLE
659_bT3 MSH2 RHOQ chr2 47475160 chr2 46567072 BND CALL_659_bT3_5 FP call 0.0 0 0 2251 6 hg19 2 47702299.0 2 46794211.0 0 6 UNEVALUABLE UNEVALUABLE
659_bT3 SCN3A intergenic(BCHE,ZBBX) chr2 165113939 chr3 167032662 BND CALL_659_bT3_6 FP call 0.0002 0 0 496 3 hg19 2 165970449.0 3 166750450.0 0 3 UNEVALUABLE UNEVALUABLE
659_bT3 intergenic(PARD3B,NRP2) CCNB3 chr2 205637524 chrX 50346727 BND CALL_659_bT3_7 FP call 0.0 0 0 9 763 hg19 2 206502248.0 X 50089726.0 0 9 UNEVALUABLE UNEVALUABLE
659_bT3 ARHGAP10 SPSB2 chr4 148012638 chr12 6872471 BND CALL_659_bT3_8 FP call 0.0003 0 0 4 2041 hg19 4 148933789.0 12 6981635.0 0 4 UNEVALUABLE UNEVALUABLE
659_bT3 intergenic(EDIL3,COX7C) SORBS2 chr5 86445372 chr4 185639030 BND CALL_659_bT3_9 FP call 0.0009 0 0 0 687 hg19 5 85741189.0 4 186560184.0 0 0 UNEVALUABLE UNEVALUABLE
659_bT3 intergenic(HLA-G,HLA-A) HLA-A chr6 29893434 chr6 29948149 DEL CALL_659_bT3_10 FP call 0.0001 0 0 0 3 hg19 6 29861211.0 6 29915926.0 0 0 UNEVALUABLE UNEVALUABLE
659_bT3 HLA-C HLA-A chr6 31271752 chr6 29943103 BND CALL_659_bT3_11 FP call 0.0 1 0 8312 8879 hg19 6 31239529.0 6 29910880.0 1 8312 EVALUABLE BAM_AMBIGUOUS
659_bT3 HLA-B intergenic(MOCS1,LRFN2) chr6 31354790 chr6 40321904 BND CALL_659_bT3_12 FP call 0.0001 0 0 7130 0 hg19 6 31322567.0 6 40289643.0 0 0 UNEVALUABLE UNEVALUABLE
659_bT3 IMPG1 intergenic(ARX,MAGEB18) chr6 76018772 chrX 25633217 BND CALL_659_bT3_13 FP call 0.0 0 0 602 0 hg19 6 76728489.0 X 25651334.0 0 0 UNEVALUABLE UNEVALUABLE
659_bT3 FGFR1 TACC1 chr8 38464585 chr8 38806842 DUP CALL_659_bT3_14 TP call 0.047 0 0 7686 0 hg19 8 38322103.0 8 38664360.0 0 0 UNEVALUABLE UNEVALUABLE
659_bT3 intergenic(PTPN5,MRGPRX1) FGFR1 chr11 18921999 chr8 38464704 BND CALL_659_bT3_15 FP call 0.0007 0 0 0 8507 hg19 11 18943546.0 8 38322222.0 0 0 UNEVALUABLE UNEVALUABLE
659_bT3 PKNOX2 ROBO3 chr11 125234536 chr11 124868965 BND CALL_659_bT3_16 TP_DUP call 0.9948 0 0 3 1642 hg19 11 125104432.0 11 124738861.0 0 3 UNEVALUABLE UNEVALUABLE
659_bT3 intergenic(SLITRK5,GPC5) NTRK2 chr13 90963777 chr9 84730918 BND CALL_659_bT3_17 FP call 0.0 0 0 0 10 hg19 13 91616031.0 9 87345833.0 0 0 UNEVALUABLE UNEVALUABLE
659_bT3 LDHD ACTN4 chr16 75112707 chr19 38685129 BND CALL_659_bT3_18 TP call 0.9941 0 0 1283 19 hg19 16 75146605.0 19 39175769.0 0 19 UNEVALUABLE UNEVALUABLE
659_bT3 SETBP1 intergenic(MRPS30,HCN1) chr18 45064915 chr5 45072199 BND CALL_659_bT3_19 FP call 0.0 0 0 2 0 hg19 18 42644880.0 5 45072301.0 0 0 UNEVALUABLE UNEVALUABLE
659_bT3 intergenic(TYROBP,LRFN3) CRNN chr19 35911350 chr1 152410810 BND CALL_659_bT3_20 TP_DUP call 0.992 0 0 43 2534 hg19 19 36402252.0 1 152383286.0 0 43 EVALUABLE BAM_REFUTED
659_bT3 intergenic(DRICH1,RGL4) FGFR1 chr22 23677180 chr8 38465048 BND CALL_659_bT3_21 FP call 0.0008 0 0 0 9645 hg19 22 24019367.0 8 38322566.0 0 0 UNEVALUABLE UNEVALUABLE
659_bT3 intergenic(TAFA5,BRD1) TEX2 chr22 49121129 chr17 64212878 BND CALL_659_bT3_22 FP call 0.0 0 0 0 2477 hg19 22 49516853.0 17 62290238.0 0 0 UNEVALUABLE UNEVALUABLE
659_bT3 ATRX intergenic(UNC5D,KCNU1) chrX 77507120 chr8 36144196 BND CALL_659_bT3_23 FP call 0.0 0 0 4 1 hg19 X 76762598.0 8 36001714.0 0 1 UNEVALUABLE UNEVALUABLE
659_bT3 ROBO3 PKNOX2 chr11 124868964 chr11 125234535 INVERSION TRUTH_659_bT3_24 TRUTH truth 179.0 0 0 1640 3 hg19 11 124738860.0 11 125104431.0 0 3 UNEVALUABLE UNEVALUABLE
659_bT3 CRNN intergenic(TYROBP,LRFN3) chr1 152410809 chr19 35911349 TRANSLOCATION TRUTH_659_bT3_25 TRUTH truth 45.0 0 0 2540 43 hg19 1 152383285.0 19 36402251.0 0 43 EVALUABLE BAM_REFUTED
659_bT3 NMNAT2 FGFR1 chr1 183342416 chr8 38465051 TRANSLOCATION TRUTH_659_bT3_26 TRUTH truth 90.0 0 0 1 9642 hg19 1 183311551.0 8 38322569.0 0 1 UNEVALUABLE UNEVALUABLE
659_bT3 LDHD ACTN4 chr16 75112706 chr19 38685128 TRANSLOCATION TRUTH_659_bT3_27 TRUTH truth 66.0 0 0 1283 19 hg19 16 75146604.0 19 39175768.0 0 19 UNEVALUABLE UNEVALUABLE
659_bT3 intergenic(FLG2,CRNN) CRNN chr1 152408601 chr1 152410808 INVERSION TRUTH_659_bT3_28 TRUTH truth 313.0 0 0 4 2550 hg19 1 152381077.0 1 152383284.0 0 4 UNEVALUABLE UNEVALUABLE
659_bT3 FGFR1 TACC1 chr8 38464584 chr8 38806841 DUPLICATION TRUTH_659_bT3_29 TRUTH truth 213.0 0 0 7685 0 hg19 8 38322102.0 8 38664359.0 0 0 UNEVALUABLE UNEVALUABLE
659_bT3 intergenic(EPHA2,ARHGEF19) ARHGEF19 chr1 16163616 chr1 16202493 DUPLICATION TRUTH_659_bT3_30 TRUTH truth 84.0 0 0 14 1079 hg19 1 16490111.0 1 16528988.0 0 14 UNEVALUABLE UNEVALUABLE
659_bV0 ITLN2 intergenic(FZD8,ANKRD30A) chr1 160948005 chr10 36824660 BND CALL_659_bV0_0 FP call 0.0001 0 0 379 4 hg19 1 160917795.0 10 37113588.0 0 4 UNEVALUABLE UNEVALUABLE
659_bV0 intergenic(NENF,ATF3) DISP1 chr1 212530184 chr1 223005086 DEL CALL_659_bV0_1 FP call 0.0026 0 0 0 4116 hg19 1 212703526.0 1 223178428.0 0 0 UNEVALUABLE UNEVALUABLE
659_bV0 FGF12 MB21D2 chr3 192513300 chr3 192798390 DEL CALL_659_bV0_2 FP call 0.2934 0 0 1 2157 hg19 3 192231089.0 3 192516179.0 0 1 UNEVALUABLE UNEVALUABLE
659_bV0 SLC1A3 PDZD2 chr5 36683931 chr5 31720832 BND CALL_659_bV0_3 FP call 0.0001 0 0 631 0 hg19 5 36684033.0 5 31720939.0 0 0 UNEVALUABLE UNEVALUABLE
659_bV0 intergenic(SNX18,ESM1) LRRC14 chr5 54555967 chr8 144520602 BND CALL_659_bV0_4 TP call 0.9457 0 0 0 2757 hg19 5 53851797.0 8 145745986.0 0 0 UNEVALUABLE UNEVALUABLE
659_bV0 IQANK1 LRRC14 chr8 143743950 chr8 144524221 DUP CALL_659_bV0_5 FP call 0.6105 0 0 8 1658 hg19 8 144826120.0 8 145749605.0 0 8 UNEVALUABLE UNEVALUABLE
659_bV0 SPATA31A1 SPATA31A6 chr9 39358821 chr9 42186809 DEL CALL_659_bV0_6 FP call 0.0 0 0 2 1634 hg19 9 39358818.0 9 40703450.0 0 2 UNEVALUABLE UNEVALUABLE
659_bV0 XPA intergenic(TRMO,HEMGN) chr9 97687246 chr9 97924719 DEL CALL_659_bV0_7 TP call 0.416 0 0 842 7 hg19 9 100449528.0 9 100687001.0 0 7 UNEVALUABLE UNEVALUABLE
659_bV0 ENSG00000272916 intergenic(IPO5,FARP1) chr10 73801735 chr13 98132267 BND CALL_659_bV0_8 FP call 0.0455 0 0 1737 10 hg19 10 75561493.0 13 98784521.0 0 10 UNEVALUABLE UNEVALUABLE
659_bV0 WEE1 AMBRA1 chr11 9574228 chr11 46414044 DUP CALL_659_bV0_9 FP call 0.2937 0 0 2719 9 hg19 11 9595775.0 11 46435594.0 0 9 UNEVALUABLE UNEVALUABLE
659_bV0 NUCB2 OTOG chr11 17208180 chr11 17629275 DUP CALL_659_bV0_10 FP call 0.4354 0 0 0 712 hg19 11 17229727.0 11 17650822.0 0 0 UNEVALUABLE UNEVALUABLE
659_bV0 intergenic(BLID,UBASH3B) TP53 chr11 122222962 chr17 7676817 BND CALL_659_bV0_11 FP call 0.0 0 0 9 3617 hg19 11 122093670.0 17 7580135.0 0 9 UNEVALUABLE UNEVALUABLE
659_bV0 CCDC77 SLCO1B3 chr12 441883 chr12 20857621 DUP CALL_659_bV0_12 TP call 0.0091 0 0 877 0 hg19 12 551049.0 12 21010555.0 0 0 UNEVALUABLE UNEVALUABLE
659_bV0 CCDC77 intergenic(GRIN2B,ATF7IP) chr12 441903 chr12 14196436 DEL CALL_659_bV0_13 FP call 0.9506 0 0 877 0 hg19 12 551069.0 12 14349370.0 0 0 UNEVALUABLE UNEVALUABLE
659_bV0 intergenic(CCDC77,B4GALNT3) TMPRSS2 chr12 445112 chr21 41483805 BND CALL_659_bV0_14 FP call 0.8669 0 0 0 7 hg19 12 554278.0 21 42855732.0 0 0 UNEVALUABLE UNEVALUABLE
659_bV0 MYH3 TMPRSS2 chr17 10630887 chr21 41483633 BND CALL_659_bV0_15 FP call 0.0035 0 0 1268 8 hg19 17 10534204.0 21 42855560.0 0 8 UNEVALUABLE UNEVALUABLE
659_bV0 MSI2 ESYT1 chr17 57596871 chr12 56138755 BND CALL_659_bV0_16 TP_DUP call 0.9362 0 0 743 1272 hg19 17 55674232.0 12 56532539.0 0 743 EVALUABLE BAM_REFUTED
659_bV0 intergenic(EIF2S2,ASIP) PRPF6 chr20 34183088 chr20 63983214 DUP CALL_659_bV0_17 TP call 0.9504 0 0 7 945 hg19 20 32770894.0 20 62614567.0 0 7 UNEVALUABLE UNEVALUABLE
659_bV0 intergenic(SNX18,ESM1) LRRC14 chr5 54555966 chr8 144520601 TRANSLOCATION TRUTH_659_bV0_18 TRUTH truth 62.0 0 0 0 2758 hg19 5 53851796.0 8 145745985.0 0 0 UNEVALUABLE UNEVALUABLE
659_bV0 XPA intergenic(TRMO,HEMGN) chr9 97687245 chr9 97924718 DELETION TRUTH_659_bV0_19 TRUTH truth 30.0 0 0 842 7 hg19 9 100449527.0 9 100687000.0 0 7 UNEVALUABLE UNEVALUABLE
659_bV0 CCDC77 SLCO1B3 chr12 441888 chr12 20857618 DUPLICATION TRUTH_659_bV0_20 TRUTH truth 46.0 0 0 877 0 hg19 12 551054.0 12 21010552.0 0 0 UNEVALUABLE UNEVALUABLE
659_bV0 ESYT1 MSI2 chr12 56138754 chr17 57596870 TRANSLOCATION TRUTH_659_bV0_21 TRUTH truth 52.0 0 0 1272 743 hg19 12 56532538.0 17 55674231.0 0 743 EVALUABLE BAM_REFUTED
659_bV0 intergenic(EIF2S2,ASIP) PRPF6 chr20 34183087 chr20 63983213 DUPLICATION TRUTH_659_bV0_22 TRUTH truth 27.0 0 0 7 945 hg19 20 32770893.0 20 62614566.0 0 7 UNEVALUABLE UNEVALUABLE
659_bV0 ERG TMPRSS2 chr21 38495363 chr21 41494677 DELETION TRUTH_659_bV0_23 TRUTH truth 61.0 0 0 0 7243 hg19 21 39867287.0 21 42866604.0 0 0 UNEVALUABLE UNEVALUABLE
659_buS SLC25A24 FOXP1 chr1 108155951 chr3 70955855 BND CALL_659_buS_0 FP call 0.0 0 0 1 1 hg19 1 108698573.0 3 71005006.0 0 1 UNEVALUABLE UNEVALUABLE
659_buS VANGL1 AR chr1 115687750 chrX 67720909 BND CALL_659_buS_1 FP call 0.0 0 0 7 1 hg19 1 116230371.0 X 66940751.0 0 1 UNEVALUABLE UNEVALUABLE
659_buS intergenic(C4BPA,CD55) MLIP chr1 207207868 chr6 54160746 BND CALL_659_buS_2 FP call 0.0001 0 0 1 797 hg19 1 207381213.0 6 54025544.0 0 1 UNEVALUABLE UNEVALUABLE
659_buS SPATA45 AR chr1 212843101 chrX 67720909 BND CALL_659_buS_3 FP call 0.0 0 0 4 1 hg19 1 213016443.0 X 66940751.0 0 1 UNEVALUABLE UNEVALUABLE
659_buS WDPCP ETV1 chr2 63547557 chr7 13978418 BND CALL_659_buS_4 FP call 0.0 0 0 0 0 hg19 2 63774691.0 7 14018043.0 0 0 UNEVALUABLE UNEVALUABLE
659_buS ANKRD36B ANKRD36 chr2 97589638 chr2 97113928 BND CALL_659_buS_5 FP call 0.0 1 0 1286 1742 hg19 2 98206101.0 2 97779665.0 1 1286 EVALUABLE BAM_AMBIGUOUS
659_buS intergenic(PAX8,ZNG1B) AR chr2 113280187 chrX 67720909 BND CALL_659_buS_6 FP call 0.0 0 0 2 1 hg19 2 114037764.0 X 66940751.0 0 1 UNEVALUABLE UNEVALUABLE
659_buS intergenic(.,CHL1) CAPRIN2 chr3 70195 chr12 30730255 BND CALL_659_buS_7 FP call 0.0 0 0 0 254 hg19 3 111878.0 12 30883189.0 0 0 UNEVALUABLE UNEVALUABLE
659_buS NEK11 FARSB chr3 131214114 chr2 222633199 BND CALL_659_buS_8 FP call 0.0045 0 0 1 207 hg19 3 130932958.0 2 223497918.0 0 1 UNEVALUABLE UNEVALUABLE
659_buS intergenic(NDST4,TRAM1L1) RSPO3 chr4 115417034 chr6 127136035 BND CALL_659_buS_9 FP call 0.0 0 0 1 0 hg19 4 116338190.0 6 127457180.0 0 0 UNEVALUABLE UNEVALUABLE
659_buS intergenic(MAT2B,TENM2) ETV1 chr5 165357718 chr7 13932070 BND CALL_659_buS_10 FP call 0.0 0 0 4 2336 hg19 5 164784724.0 7 13971695.0 0 4 UNEVALUABLE UNEVALUABLE
659_buS BMP5 ETV1 chr6 55836632 chr7 13932070 BND CALL_659_buS_11 FP call 0.0 0 0 2 2336 hg19 6 55701430.0 7 13971695.0 0 2 UNEVALUABLE UNEVALUABLE
659_buS intergenic(EYS,ADGRB3) FOXP1 chr6 67764648 chr3 70955856 BND CALL_659_buS_12 FP call 0.0 0 0 0 1 hg19 6 68474541.0 3 71005007.0 0 0 UNEVALUABLE UNEVALUABLE
659_buS intergenic(MEI4,IRAK1BP1) AR chr6 78635642 chrX 67720908 BND CALL_659_buS_13 FP call 0.0 0 0 4 1 hg19 6 79345359.0 X 66940750.0 0 1 UNEVALUABLE UNEVALUABLE
659_buS intergenic(EPHA7,MANEA) FOXP1 chr6 93813958 chr3 70955855 BND CALL_659_buS_14 FP call 0.0002 0 0 0 1 hg19 6 94523676.0 3 71005006.0 0 0 UNEVALUABLE UNEVALUABLE
659_buS intergenic(TMEM200A,SMLR1) ETV1 chr6 130711103 chr7 13932070 BND CALL_659_buS_15 FP call 0.0 0 0 0 2336 hg19 6 131032248.0 7 13971695.0 0 0 UNEVALUABLE UNEVALUABLE
659_buS AVL9 INHBA chr7 32503401 chr7 41689137 BND CALL_659_buS_16 FP call 0.0 0 0 11 999 hg19 7 32543013.0 7 41728735.0 0 11 UNEVALUABLE UNEVALUABLE
659_buS SEMA3E ETV1 chr7 83637062 chr7 13932070 BND CALL_659_buS_17 FP call 0.0 0 0 0 2336 hg19 7 83266378.0 7 13971695.0 0 0 UNEVALUABLE UNEVALUABLE
659_buS TUSC3 ETV1 chr8 15650985 chr7 13978418 BND CALL_659_buS_18 FP call 0.0 0 0 533 0 hg19 8 15508494.0 7 14018043.0 0 0 UNEVALUABLE UNEVALUABLE
659_buS intergenic(SAMD12,TNFRSF11B) AR chr8 118824433 chrX 67720909 BND CALL_659_buS_19 FP call 0.0 0 0 2 1 hg19 8 119836672.0 X 66940751.0 0 1 UNEVALUABLE UNEVALUABLE
659_buS intergenic(PSAT1,TLE4) FOXP1 chr9 78414921 chr3 70955855 BND CALL_659_buS_20 FP call 0.0 0 0 11 1 hg19 9 81029837.0 3 71005006.0 0 1 UNEVALUABLE UNEVALUABLE
659_buS CYLC2 DYNC2H1 chr9 103006094 chr11 103191585 BND CALL_659_buS_21 FP call 0.0001 0 0 718 679 hg19 9 105768376.0 11 103062314.0 0 679 EVALUABLE BAM_REFUTED
659_buS TAF3 FOXP1 chr10 7920331 chr3 70955856 BND CALL_659_buS_22 FP call 0.0 0 0 0 1 hg19 10 7962294.0 3 71005007.0 0 0 UNEVALUABLE UNEVALUABLE
659_buS MALRD1 ETV1 chr10 19575484 chr7 13978418 BND CALL_659_buS_23 FP call 0.0 0 0 2 0 hg19 10 19864413.0 7 14018043.0 0 0 UNEVALUABLE UNEVALUABLE
659_buS intergenic(IZUMO1R,GPR83) ETV1 chr11 94339261 chr7 13932070 BND CALL_659_buS_24 FP call 0.0 0 0 7 2336 hg19 11 94072427.0 7 13971695.0 0 7 UNEVALUABLE UNEVALUABLE
659_buS intergenic(AASDHPPT,GUCY1A2) AR chr11 106502339 chrX 67720909 BND CALL_659_buS_25 FP call 0.0 0 0 2 1 hg19 11 106373066.0 X 66940751.0 0 1 UNEVALUABLE UNEVALUABLE
659_buS TRHDE MACF1 chr12 72618944 chr1 39453764 BND CALL_659_buS_26 FP call 0.0 0 0 505 507 hg19 12 73012724.0 1 39919436.0 0 505 EVALUABLE BAM_REFUTED
659_buS intergenic(DAOA,EFNB2) AR chr13 106082257 chrX 67720909 BND CALL_659_buS_27 FP call 0.0 0 0 1 1 hg19 13 106734606.0 X 66940751.0 0 1 UNEVALUABLE UNEVALUABLE
659_buS intergenic(OR4N4,GOLGA6L22) FOXP1 chr15 22223856 chr3 70955856 BND CALL_659_buS_28 FP call 0.0 0 0 2 1 hg19 15 22511807.0 3 71005007.0 0 1 UNEVALUABLE UNEVALUABLE
659_buS SPIRE1 ETV1 chr18 12597158 chr7 13978418 BND CALL_659_buS_29 FP call 0.0 0 0 0 0 hg19 18 12597157.0 7 14018043.0 0 0 UNEVALUABLE UNEVALUABLE
659_buS intergenic(CBLN2,NETO1) AR chr18 72714728 chrX 67720909 BND CALL_659_buS_30 FP call 0.0 0 0 4 1 hg19 18 70381963.0 X 66940751.0 0 1 UNEVALUABLE UNEVALUABLE
659_buS CLASRP AR chr19 45043236 chrX 67720909 BND CALL_659_buS_31 FP call 0.0 0 0 4 1 hg19 19 45546494.0 X 66940751.0 0 1 UNEVALUABLE UNEVALUABLE
659_buS LENG9 SLC12A6 chr19 54462320 chr15 34337411 BND CALL_659_buS_32 TP_DUP call 0.9947 0 0 3168 4 hg19 19 54973500.0 15 34629612.0 0 4 UNEVALUABLE UNEVALUABLE
659_buS ESF1 DDHD1 chr20 13759754 chr14 53136907 BND CALL_659_buS_33 FP call 0.0002 0 0 876 1 hg19 20 13740401.0 14 53603625.0 0 1 UNEVALUABLE UNEVALUABLE
659_buS CDK5RAP1 ETV1 chr20 33373184 chr7 13932070 BND CALL_659_buS_34 FP call 0.0 0 0 110 2336 hg19 20 31960990.0 7 13971695.0 0 110 EVALUABLE BAM_REFUTED
659_buS MAP3K15 AR chrX 19413113 chrX 67720909 DUP CALL_659_buS_35 FP call 0.0 0 0 200 1 hg19 X 19431231.0 X 66940751.0 0 1 UNEVALUABLE UNEVALUABLE
659_buS AR intergenic(FAM133A,DIAPH2) chrX 67720909 chrX 95689193 DEL CALL_659_buS_36 FP call 0.0 0 0 1 2 hg19 X 66940751.0 X 94944192.0 0 1 UNEVALUABLE UNEVALUABLE
659_buS AR intergenic(PRR32,ACTRT1) chrX 67720909 chrX 127085230 DEL CALL_659_buS_37 FP call 0.0 0 0 1 0 hg19 X 66940751.0 X 126219213.0 0 0 UNEVALUABLE UNEVALUABLE
659_buS SLC12A6 LENG9 chr15 34337410 chr19 54462319 TRANSLOCATION TRUTH_659_buS_38 TRUTH truth 207.0 0 0 4 3163 hg19 15 34629611.0 19 54973499.0 0 4 UNEVALUABLE UNEVALUABLE
659_cQZ intergenic(ELK4,SLC45A3) OBSCN chr1 205643562 chr1 228367934 DUP CALL_659_cQZ_0 FP call 0.0008 0 0 6 699 hg19 1.0 205612690.0 1.0 228555635.0 0 6 UNEVALUABLE UNEVALUABLE
659_cQZ intergenic(COL21A1,DST) CYC1 chr6 56434027 chr8 144097073 BND CALL_659_cQZ_1 TP call 0.9753 0 0 33 1281 hg19 6.0 56298825.0 8.0 145151976.0 0 33 EVALUABLE BAM_REFUTED
659_cQZ PTPRJ BRAF chr11 48159462 chr7 140782210 BND CALL_659_cQZ_2 TP_DUP call 0.9732 0 0 356 3364 hg19 11.0 48181014.0 7.0 140482010.0 0 356 EVALUABLE BAM_REFUTED
659_cQZ TUBB8B intergenic(FRG1,FRG2) chr18 49537 chr4 189984652 BND CALL_659_cQZ_3 FP call 0.0007 2 0 317 646 hg19 18.0 49537.0 4.0 190905807.0 2 317 EVALUABLE BAM_AMBIGUOUS
659_cQZ intergenic(MED15,PI4KA) TFIP11 chr22 20644142 chr22 26499266 DUP CALL_659_cQZ_4 FP call 0.0006 0 0 3 2086 hg19 22.0 20998429.0 22.0 26895232.0 0 3 UNEVALUABLE UNEVALUABLE
659_cQZ TMEM191C intergenic(PDGFB,RPL3) chr22 21469327 chr22 39265925 BND CALL_659_cQZ_5 FP call 0.0021 0 0 2794 9 hg19 22.0 21823616.0 22.0 39661930.0 0 9 UNEVALUABLE UNEVALUABLE
659_cQZ TOP3B MAFF chr22 21967646 chr22 38205946 BND CALL_659_cQZ_6 FP call 0.0058 0 0 328 1 hg19 22.0 22322018.0 22.0 38601953.0 0 1 UNEVALUABLE UNEVALUABLE
659_cQZ IGLL5 SYN3 chr22 22888532 chr22 32933632 DEL CALL_659_cQZ_7 FP call 0.0453 0 0 682 9 hg19 22.0 23230712.0 22.0 33329617.0 0 9 UNEVALUABLE UNEVALUABLE
659_cQZ intergenic(IGLL5,RSPH14) BCR chr22 23011783 chr22 23264676 DEL CALL_659_cQZ_8 FP call 0.0013 0 0 0 248 hg19 22.0 23353950.0 22.0 23606863.0 0 0 UNEVALUABLE UNEVALUABLE
659_cQZ DRG1 SYN3 chr22 31423376 chr22 33030060 DUP CALL_659_cQZ_9 TP call 0.1673 0 0 577 2 hg19 22.0 31819362.0 22.0 33426045.0 0 2 UNEVALUABLE UNEVALUABLE
659_cQZ PRR14L intergenic(GALR3,ANKRD54) chr22 31715673 chr22 37830454 DEL CALL_659_cQZ_10 FP call 0.0002 0 0 1829 1 hg19 22.0 32111659.0 22.0 38226461.0 0 1 UNEVALUABLE UNEVALUABLE
659_cQZ SYN3 intergenic(CARD10,CDC42EP1) chr22 33006386 chr22 37549220 DEL CALL_659_cQZ_11 FP call 0.0012 0 0 1295 6 hg19 22.0 33402371.0 22.0 37945227.0 0 6 UNEVALUABLE UNEVALUABLE
659_cQZ intergenic(SYN3,LARGE1) TMEM191C chr22 33155032 chr22 21469681 BND CALL_659_cQZ_12 FP call 0.0 0 0 0 2861 hg19 22.0 33551018.0 22.0 21823970.0 0 0 UNEVALUABLE UNEVALUABLE
659_cQZ RBFOX2 PLA2G6 chr22 35783934 chr22 38145466 DEL CALL_659_cQZ_13 TP call 0.9957 0 0 4 417 hg19 22.0 36179981.0 22.0 38541473.0 0 4 UNEVALUABLE UNEVALUABLE
659_cQZ POLR2F intergenic(MED15,PI4KA) chr22 37971038 chr22 20657823 BND CALL_659_cQZ_14 FP call 0.371 0 0 4 2 hg19 22.0 38367045.0 22.0 21012110.0 0 2 UNEVALUABLE UNEVALUABLE
659_cQZ BAIAP2L2 intergenic(MAPK1,PPM1F) chr22 38088804 chr22 21868078 BND CALL_659_cQZ_15 FP call 0.0008 0 0 1784 17 hg19 22.0 38484811.0 22.0 22222368.0 0 17 UNEVALUABLE UNEVALUABLE
659_cQZ ENSG00000284554 FAM83F chr22 39031753 chr22 40031653 DUP CALL_659_cQZ_16 FP call 0.0005 0 0 2994 0 hg19 22.0 39427758.0 22.0 40427657.0 0 0 UNEVALUABLE UNEVALUABLE
659_cQZ intergenic(.,.) MUC3A chrUn_JTFH01000054v1_decoy 3354 chr7 100955216 BND CALL_659_cQZ_17 FP call 0.0124 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_cQZ BRAF PTPRJ chr7 140782272 chr11 48159447 TRANSLOCATION TRUTH_659_cQZ_18 TRUTH truth 275.0 0 0 3260 332 hg19 7.0 140482072.0 11.0 48180999.0 0 332 EVALUABLE BAM_REFUTED
659_cQZ RBFOX2 PLA2G6 chr22 35783933 chr22 38145465 DELETION TRUTH_659_cQZ_19 TRUTH truth 51.0 0 0 4 417 hg19 22.0 36179980.0 22.0 38541472.0 0 4 UNEVALUABLE UNEVALUABLE
659_cQZ DRG1 SYN3 chr22 31423375 chr22 33030059 DUPLICATION TRUTH_659_cQZ_20 TRUTH truth 41.0 0 0 577 2 hg19 22.0 31819361.0 22.0 33426044.0 0 2 UNEVALUABLE UNEVALUABLE
659_cQZ C22orf39 intergenic(TOP3B,VPREB1) chr22 19361263 chr22 22129245 INVERSION TRUTH_659_cQZ_21 TRUTH truth 57.0 0 0 690 4 hg19 22.0 19348786.0 22.0 22483639.0 0 4 UNEVALUABLE UNEVALUABLE
659_cQZ intergenic(COL21A1,DST) CYC1 chr6 56434026 chr8 144097072 TRANSLOCATION TRUTH_659_cQZ_22 TRUTH truth 28.0 0 0 33 1285 hg19 6.0 56298824.0 8.0 145151975.0 0 33 EVALUABLE BAM_REFUTED
659_cRB VRK2 FANCL chr2 57964974 chr2 58227963 BND CALL_659_cRB_0 FP call 0.0 0 0 0 0 hg19 2 58192109.0 2 58455098.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRB intergenic(PRKCI,SKIL) PRKCI chr3 170306010 chr3 170305922 BND CALL_659_cRB_1 FP call 0.0 0 0 0 0 hg19 3 170023798.0 3 170023710.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRB intergenic(HLA-A,POLR1H) RSPO3 chr6 29952883 chr6 127143576 BND CALL_659_cRB_2 FP call 0.0032 0 0 0 0 hg19 6 29920660.0 6 127464721.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRB TPK1 NTRK3 chr7 144782558 chr15 88050384 BND CALL_659_cRB_3 FP call 0.0 0 0 0 0 hg19 7 144479651.0 15 88593615.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRB ADAM12 KRAS chr10 126100381 chr12 25208487 BND CALL_659_cRB_4 FP call 0.0 0 0 33 0 hg19 10 127788950.0 12 25361421.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRB ENSG00000287694 ATP8B3 chr16 76603767 chr19 1795893 BND CALL_659_cRB_5 FP call 0.0002 0 0 0 1340 hg19 16 76637664.0 19 1795892.0 0 0 UNEVALUABLE UNEVALUABLE
659_cVw ALK STRN chr2 29223779 chr2 36906636 DEL CALL_659_cVw_0 FP call 0.6986 0 0 9887 16 hg19 2 29446645.0 2 37133779.0 0 16 UNEVALUABLE UNEVALUABLE
659_cVw intergenic(NT5M,MED9) TSEN15 chr17 17456958 chr1 184054431 BND CALL_659_cVw_1 FP call 0.0855 0 0 378 1101 hg19 17 17360272.0 1 184023565.0 0 378 EVALUABLE BAM_REFUTED
659_cVw NRIP1 intergenic(C21orf91,CHODL) chr21 14965747 chr21 17877830 DUP CALL_659_cVw_2 FP call 0.0028 0 0 2639 2 hg19 21 16338068.0 21 19250147.0 0 2 UNEVALUABLE UNEVALUABLE
659_cfy TACC3 FGFR3 chr4 1731155 chr4 1807114 DUP CALL_659_cfy_0 TP call 0.9999 0 0 905 14597 hg19 4 1732882.0 4 1808841.0 0 905 EVALUABLE BAM_REFUTED
659_cfy FAM171A1 intergenic(MINDY3,PTER) chr10 15214395 chr10 16281605 DEL CALL_659_cfy_1 FP call 0.0325 0 0 2643 0 hg19 10 15256394.0 10 16323604.0 0 0 UNEVALUABLE UNEVALUABLE
659_cfy SAT2 TP53 chr17 7626469 chr17 7673235 DEL CALL_659_cfy_2 FP call 0.0 0 0 1456 2591 hg19 17 7529787.0 17 7576553.0 0 1456 EVALUABLE BAM_REFUTED
659_cfy intergenic(UBE2NL,SPANXN1) HCFC1 chrX 145118432 chrX 153960147 DEL CALL_659_cfy_3 TP call 0.9367 0 0 0 2049 hg19 X 144199952.0 X 153225598.0 0 0 UNEVALUABLE UNEVALUABLE
659_cfy TACC3 FGFR3 chr4 1731154 chr4 1807113 DUPLICATION TRUTH_659_cfy_4 TRUTH truth 875.0 0 0 905 14582 hg19 4 1732881.0 4 1808840.0 0 905 EVALUABLE BAM_REFUTED
659_cfy intergenic(UBE2NL,SPANXN1) HCFC1 chrX 145118431 chrX 153960146 DELETION TRUTH_659_cfy_5 TRUTH truth 20.0 0 0 0 2050 hg19 X 144199951.0 X 153225597.0 0 0 UNEVALUABLE UNEVALUABLE
659_dRe SORCS1 HLA-A chr10 107137069 chr6 29945153 BND CALL_659_dRe_0 FP call 0.0 0 0 1 6191 hg19 10 108896827.0 6 29912930.0 0 1 UNEVALUABLE UNEVALUABLE
659_dRe ZNF536 FOXP1 chr19 30462452 chr3 70956242 BND CALL_659_dRe_1 FP call 0.0 0 0 0 0 hg19 19 30953359.0 3 71005393.0 0 0 UNEVALUABLE UNEVALUABLE
659_dRe intergenic(.,.) NTRK3 chr5_GL000208v1_random 65293 chr15 88050284 BND CALL_659_dRe_2 FP call 0.0 -1 -1 0 0 hg19 chr19_gl000208_random 65293.0 15 88593515.0 -2 0 UNEVALUABLE UNEVALUABLE
659_djb intergenic(STC1,ADAM28) NRG1 chr8 24201882 chr8 32649521 DEL CALL_659_djb_0 FP call 0.0001 0 0 0 0 hg19 8 24059395.0 8 32507040.0 0 0 UNEVALUABLE UNEVALUABLE
659_djb NRG1 TRPS1 chr8 32649983 chr8 115665676 DEL CALL_659_djb_1 FP call 0.0 0 0 1 0 hg19 8 32507502.0 8 116677903.0 0 0 UNEVALUABLE UNEVALUABLE
659_djb NRG1 PENK chr8 32652360 chr8 56440801 DUP CALL_659_djb_2 FP call 0.0011 0 0 0 163 hg19 8 32509879.0 8 57353360.0 0 0 UNEVALUABLE UNEVALUABLE
659_djb NRG1 intergenic(KHDRBS3,FAM135B) chr8 32653283 chr8 137060217 BND CALL_659_djb_3 FP call 0.0 0 0 0 2 hg19 8 32510802.0 8 138072460.0 0 0 UNEVALUABLE UNEVALUABLE
659_djb NRG1 intergenic(RIMS2,DPYS) chr8 32653726 chr8 104319205 DUP CALL_659_djb_4 FP call 0.0 0 0 1 0 hg19 8 32511245.0 8 105331433.0 0 0 UNEVALUABLE UNEVALUABLE
659_djb intergenic(SAMD12,TNFRSF11B) NT5DC4 chr8 118824479 chr2 112723454 BND CALL_659_djb_5 FP call 0.0 0 0 1 3 hg19 8 119836718.0 2 113481031.0 0 1 UNEVALUABLE UNEVALUABLE
659_djb ABCB9 PITPNM2 chr12 122980719 chr12 123060957 BND CALL_659_djb_6 FP call 0.0074 0 0 2998 0 hg19 12 123465266.0 12 123545504.0 0 0 UNEVALUABLE UNEVALUABLE
659_djb intergenic(GOT2,CDH8) ATP6AP1 chr16 58771066 chrX 154433642 BND CALL_659_djb_7 FP call 0.0053 0 0 0 610 hg19 16 58804970.0 X 153661988.0 0 0 UNEVALUABLE UNEVALUABLE
659_djb EWSR1 ATF1 chr22 29290593 chr12 50803045 BND CALL_659_djb_8 TP_DUP call 0.9991 0 0 6611 10 hg19 22 29686582.0 12 51196828.0 0 10 UNEVALUABLE UNEVALUABLE
659_djb ATF1 EWSR1 chr12 50803046 chr22 29290593 TRANSLOCATION TRUTH_659_djb_9 TRUTH truth 44.0 0 0 10 6611 hg19 12 51196829.0 22 29686582.0 0 10 UNEVALUABLE UNEVALUABLE
659_drZ HIVEP3 FAF1 chr1 41582873 chr1 50795327 DEL CALL_659_drZ_0 FP call 0.9977 0 0 1 4 hg19 1 42048544.0 1 51260999.0 0 1 UNEVALUABLE UNEVALUABLE
659_drZ FH KMO chr1 241513356 chr1 241533786 DUP CALL_659_drZ_1 FP call 0.9942 0 0 979 0 hg19 1 241676656.0 1 241697086.0 0 0 UNEVALUABLE UNEVALUABLE
659_drZ EPHB3 intergenic(EPHB3,MAGEF1) chr3 184575961 chr3 184624390 DUP CALL_659_drZ_2 TP call 0.9816 0 0 953 2 hg19 3 184293749.0 3 184342178.0 0 2 UNEVALUABLE UNEVALUABLE
659_drZ USP38 intergenic(TAFA3,SLC16A1) chr4 143206083 chr1 112789155 BND CALL_659_drZ_3 TP_DUP call 0.5559 0 0 592 17 hg19 4 144127236.0 1 113331777.0 0 17 UNEVALUABLE UNEVALUABLE
659_drZ HLA-A HLA-B chr6 29942976 chr6 31356658 BND CALL_659_drZ_4 FP call 0.0 0 0 6370 6175 hg19 6 29910753.0 6 31324435.0 0 6175 EVALUABLE BAM_REFUTED
659_drZ OLIG3 intergenic(OLIG3,TNFAIP3) chr6 137493834 chr6 137495593 DEL CALL_659_drZ_5 TP call 0.9993 0 0 2304 1 hg19 6 137814971.0 6 137816730.0 0 1 UNEVALUABLE UNEVALUABLE
659_drZ DNAH11 CDKN2B chr7 21611163 chr9 22005239 BND CALL_659_drZ_6 FP call 0.0 0 0 0 15 hg19 7 21650781.0 9 22005238.0 0 0 UNEVALUABLE UNEVALUABLE
659_drZ CCDC136 intergenic(BET1,COL1A2) chr7 128815810 chr7 94032947 BND CALL_659_drZ_7 TP_DUP call 0.9927 0 0 1004 0 hg19 7 128455864.0 7 93662259.0 0 0 UNEVALUABLE UNEVALUABLE
659_drZ DENND2A UBN2 chr7 140601609 chr7 139262474 BND CALL_659_drZ_8 TP_DUP call 0.8752 0 0 2809 27 hg19 7 140301409.0 7 138947220.0 0 27 EVALUABLE BAM_REFUTED
659_drZ IKBKB intergenic(IKBKB,POLB) chr8 42332421 chr8 42336862 DEL CALL_659_drZ_9 FP call 0.0 0 0 9 3 hg19 8 42189939.0 8 42194380.0 0 3 UNEVALUABLE UNEVALUABLE
659_drZ ELOC RALYL chr8 73972201 chr8 84212214 DEL CALL_659_drZ_10 FP call 0.4092 0 0 0 0 hg19 8 74884436.0 8 85124449.0 0 0 UNEVALUABLE UNEVALUABLE
659_drZ intergenic(PEX2,PKIA) RDH10 chr8 77277243 chr8 73297345 BND CALL_659_drZ_11 FP call 0.0113 0 0 0 356 hg19 8 78189479.0 8 74209580.0 0 0 UNEVALUABLE UNEVALUABLE
659_drZ PTEN SYNE1 chr10 87952137 chr6 152397665 BND CALL_659_drZ_12 TP_DUP call 0.0033 0 0 1484 15 hg19 10 89711894.0 6 152718800.0 0 15 UNEVALUABLE UNEVALUABLE
659_drZ LRRC4C FKBP6 chr11 41053642 chr7 73340763 BND CALL_659_drZ_13 FP call 0.0842 0 0 0 506 hg19 11 41075192.0 7 72754765.0 0 0 UNEVALUABLE UNEVALUABLE
659_drZ intergenic(APOBEC1,GDF3) A2M chr12 7681817 chr12 9074640 BND CALL_659_drZ_14 TP call 0.9888 0 0 7 1075 hg19 12 7834413.0 12 9227236.0 0 7 UNEVALUABLE UNEVALUABLE
659_drZ RERGL intergenic(NRG3,GHITM) chr12 18282015 chr10 83265761 BND CALL_659_drZ_15 FP call 0.6232 0 0 643 22 hg19 12 18434949.0 10 85025517.0 0 22 EVALUABLE BAM_REFUTED
659_drZ ENSG00000273167 HLA-B chr13 23980012 chr6 31356102 BND CALL_659_drZ_16 FP call 0.0 0 0 2 7776 hg19 13 24554151.0 6 31323879.0 0 2 UNEVALUABLE UNEVALUABLE
659_drZ MYBL2 intergenic(OSER1,GDAP1L1) chr20 43686929 chr20 44245759 DUP CALL_659_drZ_17 FP call 0.956 0 0 892 0 hg19 20 42315569.0 20 42874399.0 0 0 UNEVALUABLE UNEVALUABLE
659_drZ TBC1D10A intergenic(SEMG1,SEMG2) chr22 30326775 chr20 45215256 BND CALL_659_drZ_18 TP_DUP call 0.6526 0 0 786 16 hg19 22 30722764.0 20 43843897.0 0 16 UNEVALUABLE UNEVALUABLE
659_drZ intergenic(TAFA3,SLC16A1) USP38 chr1 112789154 chr4 143206082 TRANSLOCATION TRUTH_659_drZ_19 TRUTH truth 32.0 0 0 17 592 hg19 1 113331776.0 4 144127235.0 0 17 UNEVALUABLE UNEVALUABLE
659_drZ EPHB3 intergenic(EPHB3,MAGEF1) chr3 184575960 chr3 184624389 DUPLICATION TRUTH_659_drZ_20 TRUTH truth 73.0 0 0 953 2 hg19 3 184293748.0 3 184342177.0 0 2 UNEVALUABLE UNEVALUABLE
659_drZ OLIG3 intergenic(OLIG3,TNFAIP3) chr6 137493833 chr6 137495592 DELETION TRUTH_659_drZ_21 TRUTH truth 88.0 0 0 2304 1 hg19 6 137814970.0 6 137816729.0 0 1 UNEVALUABLE UNEVALUABLE
659_drZ SYNE1 PTEN chr6 152397663 chr10 87952136 TRANSLOCATION TRUTH_659_drZ_22 TRUTH truth 43.0 0 0 15 1484 hg19 6 152718798.0 10 89711893.0 0 15 UNEVALUABLE UNEVALUABLE
659_drZ intergenic(BET1,COL1A2) CCDC136 chr7 94032942 chr7 128815811 INVERSION TRUTH_659_drZ_23 TRUTH truth 50.0 0 0 0 1004 hg19 7 93662254.0 7 128455865.0 0 0 UNEVALUABLE UNEVALUABLE
659_drZ UBN2 DENND2A chr7 139262473 chr7 140601608 INVERSION TRUTH_659_drZ_24 TRUTH truth 22.0 0 0 27 2807 hg19 7 138947219.0 7 140301408.0 0 27 EVALUABLE BAM_REFUTED
659_drZ MMP10 MMP1 chr11 102775101 chr11 102797162 DUPLICATION TRUTH_659_drZ_25 TRUTH truth 80.0 0 0 432 2089 hg19 11 102645832.0 11 102667893.0 0 432 EVALUABLE BAM_REFUTED
659_drZ intergenic(APOBEC1,GDF3) A2M chr12 7681816 chr12 9074639 INVERSION TRUTH_659_drZ_26 TRUTH truth 74.0 0 0 7 1075 hg19 12 7834412.0 12 9227235.0 0 7 UNEVALUABLE UNEVALUABLE
659_drZ intergenic(SEMG1,SEMG2) TBC1D10A chr20 45215253 chr22 30326774 TRANSLOCATION TRUTH_659_drZ_27 TRUTH truth 28.0 0 0 16 786 hg19 20 43843894.0 22 30722763.0 0 16 UNEVALUABLE UNEVALUABLE
659_dvY intergenic(DEPDC1,LRRC7) EIF5A chr1 69402478 chr17 7311399 BND CALL_659_dvY_0 FP call 0.0 0 0 1 2814 hg19 1 69868161.0 17 7214718.0 0 1 UNEVALUABLE UNEVALUABLE
659_dvY intergenic(PTPRC,NR5A2) CAMSAP2 chr1 199796931 chr1 200849242 DUP CALL_659_dvY_1 TP call 0.9989 0 0 0 2406 hg19 1 199766059.0 1 200818370.0 0 0 UNEVALUABLE UNEVALUABLE
659_dvY SPATS2L intergenic(ENPP6,IRF2) chr2 200477727 chr4 184230848 BND CALL_659_dvY_2 TP call 0.9536 0 0 1470 21 hg19 2 201342450.0 4 185152001.0 0 21 EVALUABLE BAM_REFUTED
659_dvY SPATS2L intergenic(ICOS,PARD3B) chr2 200477783 chr2 204458645 BND CALL_659_dvY_3 TP call 0.9997 0 0 1471 0 hg19 2 201342506.0 2 205323368.0 0 0 UNEVALUABLE UNEVALUABLE
659_dvY USP4 PRG4 chr3 49281312 chr1 186306777 BND CALL_659_dvY_4 FP call 0.0 0 0 246 6055 hg19 3 49318745.0 1 186275909.0 0 246 EVALUABLE BAM_REFUTED
659_dvY KCTD8 LIPC chr4 44394634 chr15 58545781 BND CALL_659_dvY_5 FP call 0.8179 0 0 0 649 hg19 4 44396651.0 15 58837980.0 0 0 UNEVALUABLE UNEVALUABLE
659_dvY PRRC2A COL11A2 chr6 31635710 chr6 33177272 BND CALL_659_dvY_6 FP call 0.0063 0 0 1985 1418 hg19 6 31603487.0 6 33145049.0 0 1418 EVALUABLE BAM_REFUTED
659_dvY DST TACR1 chr6 56813587 chr2 75053669 BND CALL_659_dvY_7 TP_DUP call 0.7703 0 0 0 1014 hg19 6 56678385.0 2 75280796.0 0 0 UNEVALUABLE UNEVALUABLE
659_dvY DENND2A RNASEK-C17orf49 chr7 140525574 chr17 7015067 BND CALL_659_dvY_8 FP call 0.9928 0 0 341 1666 hg19 7 140225374.0 17 6918386.0 0 341 EVALUABLE BAM_REFUTED
659_dvY intergenic(TG,CCN4) CHD3 chr8 133157666 chr17 7890656 BND CALL_659_dvY_9 TP call 0.7737 0 0 2 1237 hg19 8 134169910.0 17 7793974.0 0 2 UNEVALUABLE UNEVALUABLE
659_dvY DMRT3 MYH2 chr9 988714 chr17 10525775 BND CALL_659_dvY_10 TP call 0.9936 0 0 0 1841 hg19 9 988714.0 17 10429092.0 0 0 UNEVALUABLE UNEVALUABLE
659_dvY VCP ENSG00000288699 chr9 35063742 chr9 35074039 BND CALL_659_dvY_11 FP call 0.0 0 0 644 2825 hg19 9 35063739.0 9 35074036.0 0 644 EVALUABLE BAM_REFUTED
659_dvY ALOX5 FREM2 chr10 45418202 chr13 38864348 BND CALL_659_dvY_12 TP call 0.9889 0 0 4 722 hg19 10 45913650.0 13 39438485.0 0 4 UNEVALUABLE UNEVALUABLE
659_dvY PCDH15 FREM2 chr10 55338458 chr13 38692441 BND CALL_659_dvY_13 TP call 0.9887 0 0 0 1410 hg19 10 57098218.0 13 39266578.0 0 0 UNEVALUABLE UNEVALUABLE
659_dvY NAV2 ADIPOR1 chr11 19879732 chr1 202941658 BND CALL_659_dvY_14 TP_DUP call 0.9919 0 0 1234 1204 hg19 11 19901278.0 1 202910786.0 0 1204 EVALUABLE BAM_REFUTED
659_dvY NAV2 intergenic(ZNF486,ZNF737) chr11 19879907 chr19 20384739 BND CALL_659_dvY_15 TP call 0.39 0 0 1255 0 hg19 11 19901453.0 19 20495548.0 0 0 UNEVALUABLE UNEVALUABLE
659_dvY CCT2 BEST3 chr12 69598026 chr12 69644649 DEL CALL_659_dvY_16 FP call 0.4202 0 0 975 0 hg19 12 69991806.0 12 70038429.0 0 0 UNEVALUABLE UNEVALUABLE
659_dvY MYRFL KCNMB4 chr12 69910905 chr12 70383652 BND CALL_659_dvY_17 FP call 0.0153 0 0 298 4 hg19 12 70304685.0 12 70777432.0 0 4 UNEVALUABLE UNEVALUABLE
659_dvY intergenic(TMEM121,.) AHNAK2 chr14 105920296 chr14 104949131 BND CALL_659_dvY_18 FP call 0.0001 0 0 1 8269 hg19 14 106386155.0 14 105415468.0 0 1 UNEVALUABLE UNEVALUABLE
659_dvY intergenic(ASGR2,ASGR1) PHF23 chr17 7171214 chr17 7236152 DEL CALL_659_dvY_19 FP call 0.0003 0 0 6 3882 hg19 17 7074533.0 17 7139471.0 0 6 UNEVALUABLE UNEVALUABLE
659_dvY SPEM2 KIAA0513 chr17 7427280 chr16 85077297 BND CALL_659_dvY_20 TP_DUP call 0.9989 0 0 3468 560 hg19 17 7330599.0 16 85110903.0 0 560 EVALUABLE BAM_REFUTED
659_dvY FGF11 KIAA0513 chr17 7440166 chr16 85078925 BND CALL_659_dvY_21 FP call 0.6276 0 0 795 899 hg19 17 7343485.0 16 85112531.0 0 795 EVALUABLE BAM_REFUTED
659_dvY TNFSF12 intergenic(ENSG00000284209,SHCBP1) chr17 7557228 chr16 46386392 BND CALL_659_dvY_22 FP call 0.0006 0 0 2436 77 hg19 17 7460545.0 16 46420304.0 0 77 EVALUABLE BAM_REFUTED
659_dvY GAS7 SLC35G6 chr17 9915534 chr17 7482929 BND CALL_659_dvY_23 TP_DUP call 0.3352 0 0 2 6014 hg19 17 9818851.0 17 7386248.0 0 2 UNEVALUABLE UNEVALUABLE
659_dvY GAS7 MED16 chr17 10009576 chr19 885914 BND CALL_659_dvY_24 TP call 0.9879 0 0 5 1446 hg19 17 9912893.0 19 885914.0 0 5 UNEVALUABLE UNEVALUABLE
659_dvY intergenic(.,.) RAB11FIP2 chrM 16219 chr10 118040418 BND CALL_659_dvY_25 FP call 0.998 -1 -1 0 0 hg19 chrM 16221.0 10 119799929.0 -2 0 UNEVALUABLE UNEVALUABLE
659_dvY KIAA0513 SPEM2 chr16 85077296 chr17 7427279 TRANSLOCATION TRUTH_659_dvY_26 TRUTH truth 132.0 0 0 560 3476 hg19 16 85110902.0 17 7330598.0 0 560 EVALUABLE BAM_REFUTED
659_dvY ALOX5 FREM2 chr10 45418201 chr13 38864347 TRANSLOCATION TRUTH_659_dvY_27 TRUTH truth 27.0 0 0 4 722 hg19 10 45913649.0 13 39438484.0 0 4 UNEVALUABLE UNEVALUABLE
659_dvY ADIPOR1 NAV2 chr1 202941657 chr11 19879731 TRANSLOCATION TRUTH_659_dvY_28 TRUTH truth 46.0 0 0 1202 1234 hg19 1 202910785.0 11 19901277.0 0 1202 EVALUABLE BAM_REFUTED
659_dvY SPATS2L intergenic(ENPP6,IRF2) chr2 200477726 chr4 184230847 TRANSLOCATION TRUTH_659_dvY_29 TRUTH truth 32.0 0 0 1470 21 hg19 2 201342449.0 4 185152000.0 0 21 EVALUABLE BAM_REFUTED
659_dvY TACR1 DST chr2 75053668 chr6 56813586 TRANSLOCATION TRUTH_659_dvY_30 TRUTH truth 47.0 0 0 1014 0 hg19 2 75280795.0 6 56678384.0 0 0 UNEVALUABLE UNEVALUABLE
659_dvY DMRT3 MYH2 chr9 988713 chr17 10525771 TRANSLOCATION TRUTH_659_dvY_31 TRUTH truth 77.0 0 0 0 1854 hg19 9 988713.0 17 10429088.0 0 0 UNEVALUABLE UNEVALUABLE
659_dvY ZBTB4 GAS7 chr17 7482926 chr17 9915535 INVERSION TRUTH_659_dvY_32 TRUTH truth 333.0 0 0 6036 2 hg19 17 7386245.0 17 9818852.0 0 2 UNEVALUABLE UNEVALUABLE
659_dvY GAS7 MED16 chr17 10009575 chr19 885913 TRANSLOCATION TRUTH_659_dvY_33 TRUTH truth 32.0 0 0 5 1446 hg19 17 9912892.0 19 885913.0 0 5 UNEVALUABLE UNEVALUABLE
659_dvY NAV2 intergenic(ZNF486,ZNF737) chr11 19879906 chr19 20384738 TRANSLOCATION TRUTH_659_dvY_34 TRUTH truth 68.0 0 0 1255 0 hg19 11 19901452.0 19 20495547.0 0 0 UNEVALUABLE UNEVALUABLE
659_dvY PCDH15 FREM2 chr10 55338457 chr13 38692438 TRANSLOCATION TRUTH_659_dvY_35 TRUTH truth 82.0 0 0 0 1412 hg19 10 57098217.0 13 39266575.0 0 0 UNEVALUABLE UNEVALUABLE
659_dvY intergenic(TG,CCN4) CHD3 chr8 133157665 chr17 7890653 TRANSLOCATION TRUTH_659_dvY_36 TRUTH truth 30.0 0 0 2 1236 hg19 8 134169909.0 17 7793971.0 0 2 UNEVALUABLE UNEVALUABLE
659_dvY SPATS2L intergenic(ICOS,PARD3B) chr2 200477781 chr2 204458643 INVERSION TRUTH_659_dvY_37 TRUTH truth 91.0 0 0 1471 0 hg19 2 201342504.0 2 205323366.0 0 0 UNEVALUABLE UNEVALUABLE
659_dvY intergenic(PTPRC,NR5A2) CAMSAP2 chr1 199796930 chr1 200849241 DUPLICATION TRUTH_659_dvY_38 TRUTH truth 44.0 0 0 0 2407 hg19 1 199766058.0 1 200818369.0 0 0 UNEVALUABLE UNEVALUABLE
659_e4m B4GALT2 TBCB chr1 43986524 chr19 36120751 BND CALL_659_e4m_0 TP call 0.3492 0 0 0 377 hg19 1 44452196.0 19 36611653.0 0 0 UNEVALUABLE UNEVALUABLE
659_e4m intergenic(TP53BP2,FBXO28) NVL chr1 224089572 chr1 224275452 DUP CALL_659_e4m_1 TP call 0.8084 0 0 5 491 hg19 1 224277274.0 1 224463154.0 0 5 UNEVALUABLE UNEVALUABLE
659_e4m MECOM SEC62 chr3 169352635 chr3 169992700 DUP CALL_659_e4m_2 TP call 0.1509 0 0 0 1328 hg19 3 169070423.0 3 169710488.0 0 0 UNEVALUABLE UNEVALUABLE
659_e4m intergenic(FAM200B,BST1) NSD3 chr4 15692636 chr8 38317609 BND CALL_659_e4m_3 FP call 0.0 0 0 2 6920 hg19 4 15694259.0 8 38175127.0 0 2 UNEVALUABLE UNEVALUABLE
659_e4m FBXW7 NEDD9 chr4 152411429 chr6 11275400 BND CALL_659_e4m_4 FP call 0.0 0 0 4114 1 hg19 4 153332581.0 6 11275633.0 0 1 UNEVALUABLE UNEVALUABLE
659_e4m CHD1 intergenic(PTPRR,TSPAN8) chr5 98873615 chr12 70985534 BND CALL_659_e4m_5 FP call 0.0004 0 0 309 8 hg19 5 98209319.0 12 71379314.0 0 8 UNEVALUABLE UNEVALUABLE
659_e4m RMND1 SYNE1 chr6 151409675 chr6 152344198 DUP CALL_659_e4m_6 TP call 0.0148 0 0 3 866 hg19 6 151730810.0 6 152665333.0 0 3 UNEVALUABLE UNEVALUABLE
659_e4m YAE1 FGFR2 chr7 39595408 chr10 121482255 BND CALL_659_e4m_7 TP call 0.8579 0 0 0 4467 hg19 7 39635007.0 10 123241769.0 0 0 UNEVALUABLE UNEVALUABLE
659_e4m intergenic(UNC13B,RUSC2) ARID5B chr9 35428366 chr10 62092785 BND CALL_659_e4m_8 FP call 0.0 0 0 0 2580 hg19 9 35428363.0 10 63852544.0 0 0 UNEVALUABLE UNEVALUABLE
659_e4m intergenic(DDX6,CXCR5) CENATAC chr11 118860740 chr11 118998291 DUP CALL_659_e4m_9 FP call 0.6752 0 0 6 1552 hg19 11 118731449.0 11 118869001.0 0 6 UNEVALUABLE UNEVALUABLE
659_e4m intergenic(CD63,GDF11) BAZ2A chr12 55731387 chr12 56606060 DUP CALL_659_e4m_10 TP call 0.0051 0 0 12 1258 hg19 12 56125171.0 12 56999844.0 0 12 UNEVALUABLE UNEVALUABLE
659_e4m MYO9A EPOR chr15 71866328 chr19 11383133 BND CALL_659_e4m_11 TP call 0.4751 0 0 0 1178 hg19 15 72158669.0 19 11493809.0 0 0 UNEVALUABLE UNEVALUABLE
659_e4m BCL2L1 TPX2 chr20 31707810 chr20 31783921 BND CALL_659_e4m_12 TP call 0.9377 0 0 6 756 hg19 20 30295613.0 20 30371724.0 0 6 UNEVALUABLE UNEVALUABLE
659_e4m B4GALT2 TBCB chr1 43986523 chr19 36120749 TRANSLOCATION TRUTH_659_e4m_13 TRUTH truth 40.0 0 0 0 377 hg19 1 44452195.0 19 36611651.0 0 0 UNEVALUABLE UNEVALUABLE
659_e4m intergenic(TP53BP2,FBXO28) NVL chr1 224089571 chr1 224275451 DUPLICATION TRUTH_659_e4m_14 TRUTH truth 23.0 0 0 5 491 hg19 1 224277273.0 1 224463153.0 0 5 UNEVALUABLE UNEVALUABLE
659_e4m MECOM SEC62 chr3 169352634 chr3 169992699 DUPLICATION TRUTH_659_e4m_15 TRUTH truth 28.0 0 0 0 1328 hg19 3 169070422.0 3 169710487.0 0 0 UNEVALUABLE UNEVALUABLE
659_e4m RMND1 SYNE1 chr6 151409674 chr6 152344197 DUPLICATION TRUTH_659_e4m_16 TRUTH truth 49.0 0 0 3 866 hg19 6 151730809.0 6 152665332.0 0 3 UNEVALUABLE UNEVALUABLE
659_e4m YAE1 FGFR2 chr7 39595407 chr10 121482254 TRANSLOCATION TRUTH_659_e4m_17 TRUTH truth 193.0 0 0 0 4464 hg19 7 39635006.0 10 123241768.0 0 0 UNEVALUABLE UNEVALUABLE
659_e4m BRSK2 intergenic(KRTAP5-5,KRTAP5-6) chr11 1438342 chr11 1648333 DUPLICATION TRUTH_659_e4m_18 TRUTH truth 22.0 0 0 323 1 hg19 11 1459572.0 11 1669563.0 0 1 UNEVALUABLE UNEVALUABLE
659_e4m intergenic(CD63,GDF11) BAZ2A chr12 55731386 chr12 56606059 DUPLICATION TRUTH_659_e4m_19 TRUTH truth 26.0 0 0 12 1252 hg19 12 56125170.0 12 56999843.0 0 12 UNEVALUABLE UNEVALUABLE
659_e4m MYO9A EPOR chr15 71866327 chr19 11383131 TRANSLOCATION TRUTH_659_e4m_20 TRUTH truth 49.0 0 0 0 1178 hg19 15 72158668.0 19 11493807.0 0 0 UNEVALUABLE UNEVALUABLE
659_e4m BCL2L1 TPX2 chr20 31707809 chr20 31783920 INVERSION TRUTH_659_e4m_21 TRUTH truth 41.0 0 0 6 756 hg19 20 30295612.0 20 30371723.0 0 6 UNEVALUABLE UNEVALUABLE
659_eK7 BRAF RAD21L1 chr7 140782046 chr20 1269408 BND CALL_659_eK7_0 FP call 0.9925 0 0 3951 0 hg19 7 140481846.0 20 1250052.0 0 0 UNEVALUABLE UNEVALUABLE
659_eK7 SLC2A14 SLC2A3 chr12 7814518 chr12 7921577 DUP CALL_659_eK7_1 FP call 0.0001 2 0 531 1428 hg19 12 7967114.0 12 8074173.0 2 531 EVALUABLE BAM_AMBIGUOUS
659_eK7 MBP BRAF chr18 77094966 chr7 140781848 BND CALL_659_eK7_2 TP_DUP call 0.2813 0 0 3 3079 hg19 18 74806922.0 7 140481648.0 0 3 UNEVALUABLE UNEVALUABLE
659_eK7 BRAF MBP chr7 140781847 chr18 77094965 TRANSLOCATION TRUTH_659_eK7_3 TRUTH truth 181.0 0 0 3074 3 hg19 7 140481647.0 18 74806921.0 0 3 UNEVALUABLE UNEVALUABLE
659_n7 intergenic(THNSL2,FOXI3) ATM chr2 88307899 chr11 108251020 BND CALL_659_n7_0 FP call 0.0 0 0 4 2764 hg19 2 88607418.0 11 108121747.0 0 4 UNEVALUABLE UNEVALUABLE
659_n7 L3MBTL3 FGFR2 chr6 130088210 chr10 121480733 BND CALL_659_n7_1 TP call 0.1348 0 0 0 6807 hg19 6 130409355.0 10 123240247.0 0 0 UNEVALUABLE UNEVALUABLE
659_n7 KLHL9 intergenic(CDKN2B,DMRTA1) chr9 21333067 chr9 22253303 DEL CALL_659_n7_2 TP call 0.9119 0 0 1417 6 hg19 9 21333066.0 9 22253302.0 0 6 UNEVALUABLE UNEVALUABLE
659_n7 intergenic(FSHB,ARL14EP) DCDC1 chr11 30242421 chr11 31265596 DUP CALL_659_n7_3 TP call 0.3634 0 0 0 212 hg19 11 30263968.0 11 31287143.0 0 0 UNEVALUABLE UNEVALUABLE
659_n7 BTG4 ATP6V0A4 chr11 111498130 chr7 138765809 BND CALL_659_n7_4 FP call 0.0004 0 0 797 23 hg19 11 111368855.0 7 138450554.0 0 23 EVALUABLE BAM_REFUTED
659_n7 ARRDC5 intergenic(PTPRS,ZNRF4) chr19 4891309 chr19 5441786 BND CALL_659_n7_5 FP call 0.0056 0 0 1104 20 hg19 19 4891321.0 19 5441797.0 0 20 EVALUABLE BAM_REFUTED
659_n7 L3MBTL3 FGFR2 chr6 130088209 chr10 121480729 TRANSLOCATION TRUTH_659_n7_6 TRUTH truth 145.0 0 0 0 6807 hg19 6 130409354.0 10 123240243.0 0 0 UNEVALUABLE UNEVALUABLE
659_n7 KLHL9 intergenic(CDKN2B,DMRTA1) chr9 21333066 chr9 22253302 DELETION TRUTH_659_n7_7 TRUTH truth 55.0 0 0 1416 6 hg19 9 21333065.0 9 22253301.0 0 6 UNEVALUABLE UNEVALUABLE
659_n7 intergenic(FSHB,ARL14EP) DCDC1 chr11 30242420 chr11 31265595 DUPLICATION TRUTH_659_n7_8 TRUTH truth 32.0 0 0 0 212 hg19 11 30263967.0 11 31287142.0 0 0 UNEVALUABLE UNEVALUABLE
659_pO KCNJ10 intergenic(PPDPF,PTK6) chr1 160030561 chr20 63526282 BND CALL_659_pO_0 TP call 0.8485 0 0 1917 12 hg19 1 160000351.0 20 62157635.0 0 12 UNEVALUABLE UNEVALUABLE
659_pO NBEAL1 intergenic(CRISP1,DEFB114) chr2 203167324 chr6 49920883 BND CALL_659_pO_1 FP call 0.0001 0 0 448 0 hg19 2 204032047.0 6 49888596.0 0 0 UNEVALUABLE UNEVALUABLE
659_pO intergenic(C4orf33,PCDH10) GTPBP3 chr4 133098514 chr19 17341532 BND CALL_659_pO_2 TP call 0.9208 0 0 1 1825 hg19 4 134019669.0 19 17452341.0 0 1 UNEVALUABLE UNEVALUABLE
659_pO intergenic(DAB2,TTC33) TSHZ1 chr5 39993283 chr18 75287082 BND CALL_659_pO_3 TP call 0.9943 0 0 3 3852 hg19 5 39993385.0 18 72999037.0 0 3 UNEVALUABLE UNEVALUABLE
659_pO intergenic(DUSP26,UNC5D) NAGS chr8 34939080 chr17 44007451 BND CALL_659_pO_4 FP call 0.9838 0 0 1 1462 hg19 8 34796598.0 17 42084819.0 0 1 UNEVALUABLE UNEVALUABLE
659_pO intergenic(GFUS,ZNF623) SCRIB chr8 143628832 chr8 143805251 DUP CALL_659_pO_5 FP call 0.2995 0 0 20 1943 hg19 8 144711002.0 8 144887421.0 0 20 EVALUABLE BAM_REFUTED
659_pO intergenic(ANXA1,RORB) TNN chr9 74290883 chr1 175123401 BND CALL_659_pO_6 FP call 0.0 0 0 6 1558 hg19 9 76905799.0 1 175092537.0 0 6 UNEVALUABLE UNEVALUABLE
659_pO SCD KDM5A chr10 100355962 chr12 283891 BND CALL_659_pO_7 FP call 0.0 0 0 48 2 hg19 10 102115719.0 12 393057.0 0 2 UNEVALUABLE UNEVALUABLE
659_pO ARHGEF12 intergenic(HTR2A,SUCLA2) chr11 120446989 chr13 47421857 BND CALL_659_pO_8 FP call 0.0556 0 0 926 0 hg19 11 120317698.0 13 47995992.0 0 0 UNEVALUABLE UNEVALUABLE
659_pO ENSG00000285238 SPSB2 chr12 6599789 chr12 6881777 DUP CALL_659_pO_9 FP call 0.8932 0 0 4097 6 hg19 12 6708955.0 12 6990941.0 0 6 UNEVALUABLE UNEVALUABLE
659_pO METTL25 CLEC17A chr12 82377588 chr19 14592312 BND CALL_659_pO_10 TP call 0.8722 0 0 3 375 hg19 12 82771367.0 19 14703124.0 0 3 UNEVALUABLE UNEVALUABLE
659_pO intergenic(NEDD1,TMPO) TMPO chr12 98491825 chr12 98547843 DUP CALL_659_pO_11 FP call 0.997 0 0 12 1070 hg19 12 98885603.0 12 98941621.0 0 12 UNEVALUABLE UNEVALUABLE
659_pO C1QTNF1 RBFOX3 chr17 79047975 chr17 79129840 DUP CALL_659_pO_12 FP call 0.158 0 0 2078 0 hg19 17 77044057.0 17 77125922.0 0 0 UNEVALUABLE UNEVALUABLE
659_pO MYPOP IRF2BP1 chr19 45901862 chr19 45885166 BND CALL_659_pO_13 FP call 0.9355 0 0 1397 3470 hg19 19 46405120.0 19 46388424.0 0 1397 EVALUABLE BAM_REFUTED
659_pO intergenic(LBP,RALGAPB) FAM83D chr20 38385384 chr20 38926806 DUP CALL_659_pO_14 FP call 0.442 0 0 9 2130 hg19 20 37014026.0 20 37555449.0 0 9 UNEVALUABLE UNEVALUABLE
659_pO TOP1 intergenic(PFDN4,DOK5) chr20 41124300 chr20 54320429 DEL CALL_659_pO_15 FP call 0.0006 0 0 1 0 hg19 20 39752940.0 20 52936968.0 0 0 UNEVALUABLE UNEVALUABLE
659_pO CHD6 intergenic(PTPRT,SRSF6) chr20 41423578 chr20 43206553 BND CALL_659_pO_16 TP call 0.9665 0 0 545 0 hg19 20 40052218.0 20 41835193.0 0 0 UNEVALUABLE UNEVALUABLE
659_pO PTPRT TAF4 chr20 42573230 chr20 61999023 DEL CALL_659_pO_17 TP call 0.9958 0 0 2 729 hg19 20 41201870.0 20 60574079.0 0 2 UNEVALUABLE UNEVALUABLE
659_pO intergenic(CDH22,SLC35C2) PPFIA1 chr20 46312716 chr11 70326612 BND CALL_659_pO_18 FP call 0.1241 0 0 0 873 hg19 20 44941355.0 11 70172718.0 0 0 UNEVALUABLE UNEVALUABLE
659_pO intergenic(CEBPB,PTPN1) DCAF6 chr20 50305531 chr1 167987591 BND CALL_659_pO_19 FP call 0.9893 0 0 0 172 hg19 20 48922068.0 1 167956829.0 0 0 UNEVALUABLE UNEVALUABLE
659_pO intergenic(ZFP64,TSHZ2) HELZ2 chr20 52860849 chr20 63563032 DUP CALL_659_pO_20 TP call 0.9966 0 0 1 2915 hg19 20 51477388.0 20 62194385.0 0 1 UNEVALUABLE UNEVALUABLE
659_pO intergenic(RRAGB,KLF8) ZXDB chrX 55990269 chrX 57593846 DEL CALL_659_pO_21 FP call 0.0075 0 0 2 3710 hg19 X 56016702.0 X 57620279.0 0 2 UNEVALUABLE UNEVALUABLE
659_pO PIGM intergenic(PPDPF,PTK6) chr1 160030560 chr20 63526281 TRANSLOCATION TRUTH_659_pO_22 TRUTH truth 44.0 0 0 1915 12 hg19 1 160000350.0 20 62157634.0 0 12 UNEVALUABLE UNEVALUABLE
659_pO intergenic(C4orf33,PCDH10) GTPBP3 chr4 133098513 chr19 17341531 TRANSLOCATION TRUTH_659_pO_23 TRUTH truth 34.0 0 0 1 1825 hg19 4 134019668.0 19 17452340.0 0 1 UNEVALUABLE UNEVALUABLE
659_pO intergenic(DAB2,TTC33) TSHZ1 chr5 39993282 chr18 75287081 TRANSLOCATION TRUTH_659_pO_24 TRUTH truth 31.0 0 0 3 3850 hg19 5 39993384.0 18 72999036.0 0 3 UNEVALUABLE UNEVALUABLE
659_pO METTL25 CLEC17A chr12 82377587 chr19 14592311 TRANSLOCATION TRUTH_659_pO_25 TRUTH truth 39.0 0 0 3 375 hg19 12 82771366.0 19 14703123.0 0 3 UNEVALUABLE UNEVALUABLE
659_pO CHD6 intergenic(PTPRT,SRSF6) chr20 41423577 chr20 43206552 INVERSION TRUTH_659_pO_26 TRUTH truth 83.0 0 0 545 0 hg19 20 40052217.0 20 41835192.0 0 0 UNEVALUABLE UNEVALUABLE
659_pO PTPRT TAF4 chr20 42573229 chr20 61999022 DELETION TRUTH_659_pO_27 TRUTH truth 369.0 0 0 2 729 hg19 20 41201869.0 20 60574078.0 0 2 UNEVALUABLE UNEVALUABLE
659_pO intergenic(ZFP64,TSHZ2) HELZ2 chr20 52860848 chr20 63563031 DUPLICATION TRUTH_659_pO_28 TRUTH truth 49.0 0 0 1 2917 hg19 20 51477387.0 20 62194384.0 0 1 UNEVALUABLE UNEVALUABLE
659_ri intergenic(MFSD2A,CAP1) AR chr1 39994903 chrX 67720909 BND CALL_659_ri_0 FP call 0.0 0 0 3 0 hg19 1 40460575.0 X 66940751.0 0 0 UNEVALUABLE UNEVALUABLE
659_ri FUBP1 NEK7 chr1 77948702 chr1 198194682 DEL CALL_659_ri_1 FP call 0.0 0 0 4862 1 hg19 1 78414387.0 1 198163812.0 0 1 UNEVALUABLE UNEVALUABLE
659_ri intergenic(TSPAN2,NGF) NTRK3 chr1 115137160 chr15 88010768 BND CALL_659_ri_2 FP call 0.0001 0 0 2 0 hg19 1 115679781.0 15 88553999.0 0 0 UNEVALUABLE UNEVALUABLE
659_ri PROX1 NTRK3 chr1 214000044 chr15 88010768 BND CALL_659_ri_3 FP call 0.0 0 0 0 0 hg19 1 214173387.0 15 88553999.0 0 0 UNEVALUABLE UNEVALUABLE
659_ri PAX3 GRID1 chr2 222216726 chr10 85667306 BND CALL_659_ri_4 FP call 0.0 0 0 7586 0 hg19 2 223081445.0 10 87427063.0 0 0 UNEVALUABLE UNEVALUABLE
659_ri PAX3 ROR2 chr2 222216726 chr9 91711347 BND CALL_659_ri_5 FP call 0.0 0 0 7586 0 hg19 2 223081445.0 9 94473629.0 0 0 UNEVALUABLE UNEVALUABLE
659_ri TACC3 FGFR3 chr4 1737480 chr4 1807379 DUP CALL_659_ri_6 TP call 0.984 0 0 593 10350 hg19 4 1739207.0 4 1809106.0 0 593 EVALUABLE BAM_REFUTED
659_ri ELOVL6 TMEM41A chr4 110148163 chr3 185483662 BND CALL_659_ri_7 FP call 0.0 0 0 4 2 hg19 4 111069319.0 3 185201450.0 0 2 UNEVALUABLE UNEVALUABLE
659_ri FSTL5 NRG1 chr4 161516725 chr8 32640662 BND CALL_659_ri_8 FP call 0.0 0 0 0 6 hg19 4 162437877.0 8 32498181.0 0 0 UNEVALUABLE UNEVALUABLE
659_ri GHR IDH2 chr5 42670923 chr15 90083051 BND CALL_659_ri_9 FP call 0.0 0 0 0 4 hg19 5 42671025.0 15 90626283.0 0 0 UNEVALUABLE UNEVALUABLE
659_ri intergenic(GMDS,MYLK4) RBBP6 chr6 2445909 chr16 24570016 BND CALL_659_ri_10 FP call 0.0 0 0 2 3019 hg19 6 2446143.0 16 24581337.0 0 2 UNEVALUABLE UNEVALUABLE
659_ri EPHA7 intergenic(SEC61G,EGFR) chr6 93410168 chr7 54811829 BND CALL_659_ri_11 FP call 0.0 0 0 1496 1 hg19 6 94119886.0 7 54879522.0 0 1 UNEVALUABLE UNEVALUABLE
659_ri intergenic(FBXL4,FAXC) ETV1 chr6 99002291 chr7 13956785 BND CALL_659_ri_12 FP call 0.0 0 0 0 3998 hg19 6 99450167.0 7 13996410.0 0 0 UNEVALUABLE UNEVALUABLE
659_ri ETV1 intergenic(TFAP2B,PKHD1) chr7 13932070 chr6 51218700 BND CALL_659_ri_13 FP call 0.0 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_ri ETV1 intergenic(NR2F2,ARRDC4) chr7 13932070 chr15 97459451 BND CALL_659_ri_14 FP call 0.0001 0 0 1889 0 hg19 7 13971695.0 15 98002681.0 0 0 UNEVALUABLE UNEVALUABLE
659_ri ETV1 intergenic(ZBTB20,GAP43) chr7 13932070 chr3 115267475 BND CALL_659_ri_15 FP call 0.0 0 0 1889 8 hg19 7 13971695.0 3 114986322.0 0 8 UNEVALUABLE UNEVALUABLE
659_ri ENSG00000288640 NTRK3 chr7 112463854 chr15 88010767 BND CALL_659_ri_16 FP call 0.0002 0 0 0 0 hg19 7 112103909.0 15 88553998.0 0 0 UNEVALUABLE UNEVALUABLE
659_ri GSR NRG1 chr8 30723783 chr8 32640661 DUP CALL_659_ri_17 FP call 0.0 0 0 3 6 hg19 8 30581300.0 8 32498180.0 0 3 UNEVALUABLE UNEVALUABLE
659_ri NRG1 intergenic(KIAA0930,UPK3A) chr8 32640661 chr22 45253439 BND CALL_659_ri_18 FP call 0.0 0 0 6 2 hg19 8 32498180.0 22 45649320.0 0 2 UNEVALUABLE UNEVALUABLE
659_ri NRG1 intergenic(TMEM200A,SMLR1) chr8 32640661 chr6 130711104 BND CALL_659_ri_19 FP call 0.0 0 0 6 0 hg19 8 32498180.0 6 131032249.0 0 0 UNEVALUABLE UNEVALUABLE
659_ri NRG1 PARP8 chr8 32640662 chr5 50709876 BND CALL_659_ri_20 FP call 0.0 0 0 6 0 hg19 8 32498181.0 5 50005710.0 0 0 UNEVALUABLE UNEVALUABLE
659_ri NRG1 PCDH19 chr8 32640662 chrX 100371850 BND CALL_659_ri_21 FP call 0.0 0 0 6 0 hg19 8 32498181.0 X 99626848.0 0 0 UNEVALUABLE UNEVALUABLE
659_ri NRG1 intergenic(PCDH7,ARAP2) chr8 32640662 chr4 33204208 BND CALL_659_ri_22 FP call 0.0 0 0 6 1 hg19 8 32498181.0 4 33205830.0 0 1 UNEVALUABLE UNEVALUABLE
659_ri NRG1 intergenic(TMPRSS13,IL10RA) chr8 32640662 chr11 117984176 BND CALL_659_ri_23 FP call 0.0 0 0 6 0 hg19 8 32498181.0 11 117854891.0 0 0 UNEVALUABLE UNEVALUABLE
659_ri NRG1 C2CD6 chr8 32640662 chr2 201604169 BND CALL_659_ri_24 FP call 0.0 0 0 6 266 hg19 8 32498181.0 2 202468892.0 0 6 UNEVALUABLE UNEVALUABLE
659_ri NRG1 intergenic(B3GAT2,OGFRL1) chr8 32653947 chr6 71220947 BND CALL_659_ri_25 FP call 0.001 0 0 10 1 hg19 8 32511466.0 6 71930650.0 0 1 UNEVALUABLE UNEVALUABLE
659_ri NRG1 intergenic(SPATA31A3,ANKRD20A1) chr8 32690885 chr9 67687625 BND CALL_659_ri_26 FP call 0.0 0 0 10 4 hg19 8 32548403.0 9 46353462.0 0 4 UNEVALUABLE UNEVALUABLE
659_ri DDHD2 ZFHX3 chr8 38270670 chr16 72996184 BND CALL_659_ri_27 FP call 0.0 0 0 0 2 hg19 8 38128188.0 16 73030083.0 0 0 UNEVALUABLE UNEVALUABLE
659_ri DDHD2 NSUN6 chr8 38273289 chr10 18604609 BND CALL_659_ri_28 FP call 0.0 0 0 0 11 hg19 8 38130807.0 10 18893538.0 0 0 UNEVALUABLE UNEVALUABLE
659_ri intergenic(CCDC171,BNC2) GBA2 chr9 16112337 chr9 35738554 DUP CALL_659_ri_29 FP call 0.7191 0 0 1 1162 hg19 9 16112335.0 9 35738551.0 0 1 UNEVALUABLE UNEVALUABLE
659_ri intergenic(NTRK2,AGTPBP1) NRG1 chr9 85363156 chr8 32640661 BND CALL_659_ri_30 FP call 0.0 0 0 2 6 hg19 9 87978071.0 8 32498180.0 0 2 UNEVALUABLE UNEVALUABLE
659_ri STPG3 RNFT2 chr9 137252523 chr12 116742357 BND CALL_659_ri_31 FP call 0.0022 0 0 1998 1 hg19 9 140146975.0 12 117180162.0 0 1 UNEVALUABLE UNEVALUABLE
659_ri PLXDC2 AR chr10 19901016 chrX 67720909 BND CALL_659_ri_32 FP call 0.0 0 0 2 0 hg19 10 20189945.0 X 66940751.0 0 0 UNEVALUABLE UNEVALUABLE
659_ri intergenic(PLXDC2,NEBL) NTRK3 chr10 20381505 chr15 88010768 BND CALL_659_ri_33 FP call 0.0 0 0 0 0 hg19 10 20670434.0 15 88553999.0 0 0 UNEVALUABLE UNEVALUABLE
659_ri intergenic(FGF3,ANO1) PRSS56 chr11 69842743 chr2 232524828 BND CALL_659_ri_34 FP call 0.0 0 0 0 1122 hg19 11 69657511.0 2 233389538.0 0 0 UNEVALUABLE UNEVALUABLE
659_ri PICALM NRG1 chr11 85968948 chr8 32640661 BND CALL_659_ri_35 FP call 0.0 0 0 4 6 hg19 11 85679991.0 8 32498180.0 0 4 UNEVALUABLE UNEVALUABLE
659_ri CNTN5 NTRK3 chr11 99236461 chr15 88010768 BND CALL_659_ri_36 FP call 0.0 0 0 1 0 hg19 11 99107192.0 15 88553999.0 0 0 UNEVALUABLE UNEVALUABLE
659_ri ETV6 RTTN chr12 11827071 chr18 70184717 BND CALL_659_ri_37 FP call 0.0 0 0 4 14 hg19 12 11980005.0 18 67851953.0 0 4 UNEVALUABLE UNEVALUABLE
659_ri CAPS2 intergenic(GCM1,ELOVL5) chr12 75321478 chr6 53238175 BND CALL_659_ri_38 FP call 0.0007 0 0 352 5 hg19 12 75715258.0 6 53102973.0 0 5 UNEVALUABLE UNEVALUABLE
659_ri intergenic(CMA1,CTSG) AR chr14 24570972 chrX 67720909 BND CALL_659_ri_39 FP call 0.0 0 0 0 0 hg19 14 25040178.0 X 66940751.0 0 0 UNEVALUABLE UNEVALUABLE
659_ri ENSG00000258989 NRG1 chr14 61567639 chr8 32640661 BND CALL_659_ri_40 FP call 0.0 0 0 0 6 hg19 14 62034357.0 8 32498180.0 0 0 UNEVALUABLE UNEVALUABLE
659_ri GTF2A1 BRAF chr14 81186999 chr7 140786369 BND CALL_659_ri_41 FP call 0.0 0 0 4 6637 hg19 14 81653343.0 7 140486169.0 0 4 UNEVALUABLE UNEVALUABLE
659_ri FLRT2 PAX3 chr14 85598827 chr2 222204966 BND CALL_659_ri_42 FP call 0.0 0 0 4 5285 hg19 14 86065171.0 2 223069685.0 0 4 UNEVALUABLE UNEVALUABLE
659_ri TUBGCP4 SENP7 chr15 43406237 chr3 101408479 BND CALL_659_ri_43 FP call 0.0 0 0 7 0 hg19 15 43698435.0 3 101127323.0 0 0 UNEVALUABLE UNEVALUABLE
659_ri SCG3 ETV1 chr15 51689432 chr7 13932070 BND CALL_659_ri_44 FP call 0.0 0 0 652 1889 hg19 15 51981629.0 7 13971695.0 0 652 EVALUABLE BAM_REFUTED
659_ri intergenic(CYP11A1,SEMA7A) NTRK3 chr15 74398584 chr15 88010768 BND CALL_659_ri_45 FP call 0.0 0 0 2 0 hg19 15 74690925.0 15 88553999.0 0 0 UNEVALUABLE UNEVALUABLE
659_ri NTRK3 intergenic(BOD1L1,CPEB2) chr15 88010768 chr4 13985205 BND CALL_659_ri_46 FP call 0.0 0 0 0 6 hg19 15 88553999.0 4 13986829.0 0 0 UNEVALUABLE UNEVALUABLE
659_ri NPIPB11 intergenic(LAT,NPIPB11) chr16 29393987 chr16 29129476 BND CALL_659_ri_47 FP call 0.0006 0 0 963 2 hg19 16 29405308.0 16 29140797.0 0 2 UNEVALUABLE UNEVALUABLE
659_ri KANK3 PTPRG chr19 8333148 chr3 61844063 BND CALL_659_ri_48 FP call 0.0022 0 0 662 8 hg19 19 8398032.0 3 61829737.0 0 8 UNEVALUABLE UNEVALUABLE
659_ri AR intergenic(SPATA31D1,RASEF) chrX 67720908 chr9 82679073 BND CALL_659_ri_49 FP call 0.0 0 0 0 0 hg19 X 66940750.0 9 85293988.0 0 0 UNEVALUABLE UNEVALUABLE
659_ri AR ANKS1B chrX 67720909 chr12 99163504 BND CALL_659_ri_50 FP call 0.0 0 0 0 20 hg19 X 66940751.0 12 99557282.0 0 0 UNEVALUABLE UNEVALUABLE
659_ri intergenic(CPXCR1,TGIF2LX) TENT5C chrX 89419096 chr1 117627866 BND CALL_659_ri_51 FP call 0.0 0 0 0 1 hg19 X 88674095.0 1 118170488.0 0 0 UNEVALUABLE UNEVALUABLE
659_ri ZNF75D NRG1 chrX 135306289 chr8 32640661 BND CALL_659_ri_52 FP call 0.0 0 0 2 6 hg19 X 134440215.0 8 32498180.0 0 2 UNEVALUABLE UNEVALUABLE
659_ri TACC3 FGFR3 chr4 1737479 chr4 1807378 DUPLICATION TRUTH_659_ri_53 TRUTH truth 542.0 0 0 593 10350 hg19 4 1739206.0 4 1809105.0 0 593 EVALUABLE BAM_REFUTED
659_sv ABCA12 SPEGNB chr2 214980212 chr2 219498087 DUP CALL_659_sv_0 TP call 0.1467 0 0 737 1374 hg19 2 215844936.0 2 220362809.0 0 737 EVALUABLE BAM_REFUTED
659_sv FLNB FGFR3 chr3 58161702 chr4 1804513 BND CALL_659_sv_1 FP call 0.0 0 0 4 4118 hg19 3 58147429.0 4 1806240.0 0 4 UNEVALUABLE UNEVALUABLE
659_sv ATP13A3 KCNMB2 chr3 194448583 chr3 178363845 BND CALL_659_sv_2 FP call 0.0041 0 0 811 0 hg19 3 194169312.0 3 178081633.0 0 0 UNEVALUABLE UNEVALUABLE
659_sv CWH43 ADGRL3 chr4 49032672 chr4 61961138 DUP CALL_659_sv_3 TP call 0.0036 0 0 590 5 hg19 4 49034689.0 4 62826856.0 0 5 UNEVALUABLE UNEVALUABLE
659_sv CWH43 FAT4 chr4 49035655 chr4 125481574 DUP CALL_659_sv_4 FP call 0.0132 0 0 1 622 hg19 4 49037672.0 4 126402729.0 0 1 UNEVALUABLE UNEVALUABLE
659_sv intergenic(SPRY1,ANKRD50) FAT4 chr4 123743007 chr4 125479823 DUP CALL_659_sv_5 TP_DUP call 0.4466 0 0 0 634 hg19 4 124664162.0 4 126400978.0 0 0 UNEVALUABLE UNEVALUABLE
659_sv FAT4 FGFR1 chr4 125471095 chr8 38421942 BND CALL_659_sv_6 FP call 0.0005 0 0 0 1861 hg19 4 126392250.0 8 38279460.0 0 0 UNEVALUABLE UNEVALUABLE
659_sv intergenic(C4orf33,PCDH10) DDHD2 chr4 131294577 chr8 38260074 BND CALL_659_sv_7 FP call 0.8013 0 0 1 310 hg19 4 132215732.0 8 38117592.0 0 1 UNEVALUABLE UNEVALUABLE
659_sv TENM3 ERICH1 chr4 182283691 chr8 664654 BND CALL_659_sv_8 FP call 0.0026 0 0 1 1251 hg19 4 183204844.0 8 614654.0 0 1 UNEVALUABLE UNEVALUABLE
659_sv GRAMD2B GREB1 chr5 126360456 chr2 11642155 BND CALL_659_sv_9 FP call 0.044 0 0 547 11 hg19 5 125696148.0 2 11782281.0 0 11 UNEVALUABLE UNEVALUABLE
659_sv PTPRN2 PLEKHA2 chr7 158090922 chr8 38969777 BND CALL_659_sv_10 FP call 0.7044 0 0 2 1717 hg19 7 157883614.0 8 38827296.0 0 2 UNEVALUABLE UNEVALUABLE
659_sv ERICH1 intergenic(UNC5D,KCNU1) chr8 664652 chr8 36283890 DEL CALL_659_sv_11 TP call 0.9149 0 0 1251 2 hg19 8 614652.0 8 36141408.0 0 2 UNEVALUABLE UNEVALUABLE
659_sv intergenic(UNC5D,KCNU1) FGFR1 chr8 36133249 chr8 38467829 DEL CALL_659_sv_12 TP call 0.0151 0 0 8 6976 hg19 8 35990767.0 8 38325347.0 0 8 UNEVALUABLE UNEVALUABLE
659_sv BAG4 ASH2L chr8 38197406 chr8 38114192 BND CALL_659_sv_13 FP call 0.8749 0 0 15 346 hg19 8 38054924.0 8 37971710.0 0 15 UNEVALUABLE UNEVALUABLE
659_sv FGFR1 CNOT6L chr8 38421841 chr4 77780650 BND CALL_659_sv_14 FP call 0.0005 0 0 1861 1 hg19 8 38279359.0 4 78701804.0 0 1 UNEVALUABLE UNEVALUABLE
659_sv FGFR1 TENM3 chr8 38421946 chr4 182202531 BND CALL_659_sv_15 FP call 0.0 0 0 1861 13 hg19 8 38279464.0 4 183123684.0 0 13 UNEVALUABLE UNEVALUABLE
659_sv intergenic(FGFR1,TACC1) IKBKB chr8 38470719 chr8 42272235 BND CALL_659_sv_16 FP call 0.0385 0 0 5 781 hg19 8 38328237.0 8 42129753.0 0 5 UNEVALUABLE UNEVALUABLE
659_sv ADAM18 IKBKB chr8 39660753 chr8 42272130 DUP CALL_659_sv_17 TP call 0.0418 0 0 7 795 hg19 8 39518272.0 8 42129648.0 0 7 UNEVALUABLE UNEVALUABLE
659_sv IPO7 PC chr11 9440581 chr11 66932558 BND CALL_659_sv_18 TP call 0.9548 0 0 531 3 hg19 11 9462128.0 11 66700029.0 0 3 UNEVALUABLE UNEVALUABLE
659_sv ACER3 B3GNT6 chr11 77010714 chr11 77040660 BND CALL_659_sv_19 TP call 0.3909 0 0 37 2434 hg19 11 76721758.0 11 76751707.0 0 37 EVALUABLE BAM_REFUTED
659_sv B3GNT6 intergenic(ACER3,B3GNT6) chr11 77040367 chr11 77028679 BND CALL_659_sv_20 TP_DUP call 0.9476 0 0 3639 26 hg19 11 76751411.0 11 76739723.0 0 26 EVALUABLE BAM_REFUTED
659_sv CACNA1C ETV6 chr12 2554441 chr12 11876103 DUP CALL_659_sv_21 TP_DUP call 0.951 0 0 1 7659 hg19 12 2663607.0 12 12029037.0 0 1 UNEVALUABLE UNEVALUABLE
659_sv intergenic(TEAD4,TSPAN9) ETV6 chr12 3071358 chr12 11866934 BND CALL_659_sv_22 TP call 0.0441 0 0 256 7679 hg19 12 3180524.0 12 12019868.0 0 256 EVALUABLE BAM_REFUTED
659_sv MLF2 CBX5 chr12 6748821 chr12 54263338 BND CALL_659_sv_23 TP call 0.1268 0 0 794 16 hg19 12 6857987.0 12 54657122.0 0 16 UNEVALUABLE UNEVALUABLE
659_sv EPS8 ETV6 chr12 15788047 chr12 11875721 BND CALL_659_sv_24 TP_DUP call 0.2212 0 0 0 7824 hg19 12 15940981.0 12 12028655.0 0 0 UNEVALUABLE UNEVALUABLE
659_sv PAN3 intergenic(SPRY2,SLITRK1) chr13 28288049 chr13 83851062 BND CALL_659_sv_25 TP call 0.8478 0 0 386 1 hg19 13 28862186.0 13 84425197.0 0 1 UNEVALUABLE UNEVALUABLE
659_sv intergenic(TMEM121,.) GREB1 chr14 106877399 chr2 11585862 BND CALL_659_sv_26 TP_DUP call 0.9266 0 0 2 502 hg19 14 107285607.0 2 11725988.0 0 2 UNEVALUABLE UNEVALUABLE
659_sv intergenic(CBLN1,C16orf78) FLT3 chr16 49340099 chr13 28003934 BND CALL_659_sv_27 FP call 0.9916 0 0 7 1833 hg19 16 49374010.0 13 28578071.0 0 7 UNEVALUABLE UNEVALUABLE
659_sv intergenic(CELF4,PIK3C3) RPS6 chr18 41039037 chr9 19378495 BND CALL_659_sv_28 FP call 0.8929 0 0 1 1265 hg19 18 38619001.0 9 19378493.0 0 1 UNEVALUABLE UNEVALUABLE
659_sv TMEM121B TAFA5 chr22 17120127 chr22 48642033 DEL CALL_659_sv_29 TP call 0.4856 0 0 2783 1 hg19 22 17601017.0 22 49037845.0 0 1 UNEVALUABLE UNEVALUABLE
659_sv CWH43 ADGRL3 chr4 49032683 chr4 61961043 DUPLICATION TRUTH_659_sv_30 TRUTH truth 35.0 0 0 590 5 hg19 4 49034700.0 4 62826761.0 0 5 UNEVALUABLE UNEVALUABLE
659_sv ETV6 EPS8 chr12 11875717 chr12 15788047 INVERSION TRUTH_659_sv_31 TRUTH truth 152.0 0 0 7824 0 hg19 12 12028651.0 12 15940981.0 0 0 UNEVALUABLE UNEVALUABLE
659_sv intergenic(ACER3,B3GNT6) B3GNT6 chr11 77028676 chr11 77040366 INVERSION TRUTH_659_sv_32 TRUTH truth 80.0 0 0 26 3643 hg19 11 76739720.0 11 76751410.0 0 26 EVALUABLE BAM_REFUTED
659_sv intergenic(TEAD4,TSPAN9) ETV6 chr12 3071357 chr12 11866933 INVERSION TRUTH_659_sv_33 TRUTH truth 137.0 0 0 256 7674 hg19 12 3180523.0 12 12019867.0 0 256 EVALUABLE BAM_REFUTED
659_sv ERICH1 intergenic(UNC5D,KCNU1) chr8 664651 chr8 36283889 DELETION TRUTH_659_sv_34 TRUTH truth 27.0 0 0 1252 2 hg19 8 614651.0 8 36141407.0 0 2 UNEVALUABLE UNEVALUABLE
659_sv PAN3 intergenic(SPRY2,SLITRK1) chr13 28288048 chr13 83851061 INVERSION TRUTH_659_sv_35 TRUTH truth 59.0 0 0 386 1 hg19 13 28862185.0 13 84425196.0 0 1 UNEVALUABLE UNEVALUABLE
659_sv GREB1 intergenic(TMEM121,.) chr2 11585861 chr14 106877398 TRANSLOCATION TRUTH_659_sv_36 TRUTH truth 28.0 0 0 503 2 hg19 2 11725987.0 14 107285606.0 0 2 UNEVALUABLE UNEVALUABLE
659_sv MLF2 CBX5 chr12 6748819 chr12 54263336 INVERSION TRUTH_659_sv_37 TRUTH truth 39.0 0 0 794 16 hg19 12 6857985.0 12 54657120.0 0 16 UNEVALUABLE UNEVALUABLE
659_sv TMEM121B TAFA5 chr22 17120126 chr22 48642032 DELETION TRUTH_659_sv_38 TRUTH truth 65.0 0 0 2788 1 hg19 22 17601016.0 22 49037844.0 0 1 UNEVALUABLE UNEVALUABLE
659_sv CACNA1C ETV6 chr12 2554440 chr12 11876102 DUPLICATION TRUTH_659_sv_39 TRUTH truth 89.0 0 0 1 7659 hg19 12 2663606.0 12 12029036.0 0 1 UNEVALUABLE UNEVALUABLE
659_sv IPO7 PC chr11 9440580 chr11 66932557 INVERSION TRUTH_659_sv_40 TRUTH truth 66.0 0 0 531 3 hg19 11 9462127.0 11 66700028.0 0 3 UNEVALUABLE UNEVALUABLE
659_sv ADAM18 IKBKB chr8 39660752 chr8 42272129 DUPLICATION TRUTH_659_sv_41 TRUTH truth 27.0 0 0 7 795 hg19 8 39518271.0 8 42129647.0 0 7 UNEVALUABLE UNEVALUABLE
659_sv ABCA12 ENSG00000286143 chr2 214980211 chr2 219498086 DUPLICATION TRUTH_659_sv_42 TRUTH truth 22.0 0 0 737 1374 hg19 2 215844935.0 2 220362808.0 0 737 EVALUABLE BAM_REFUTED
659_sv intergenic(SPRY1,ANKRD50) FAT4 chr4 123742977 chr4 125479842 DUPLICATION TRUTH_659_sv_43 TRUTH truth 26.0 0 0 0 634 hg19 4 124664132.0 4 126400997.0 0 0 UNEVALUABLE UNEVALUABLE
659_sv intergenic(UNC5D,KCNU1) FGFR1 chr8 36133248 chr8 38467828 DELETION TRUTH_659_sv_44 TRUTH truth 78.0 0 0 8 6980 hg19 8 35990766.0 8 38325346.0 0 8 UNEVALUABLE UNEVALUABLE
659_sv ACER3 B3GNT6 chr11 77010713 chr11 77040659 INVERSION TRUTH_659_sv_45 TRUTH truth 91.0 0 0 36 2443 hg19 11 76721757.0 11 76751706.0 0 36 EVALUABLE BAM_REFUTED
659_w6 ARID1A KIAA1522 chr1 26771279 chr1 32747322 DEL CALL_659_w6_0 TP call 0.1857 0 0 1414 16 hg19 1.0 27097770.0 1.0 33212923.0 0 16 UNEVALUABLE UNEVALUABLE
659_w6 KIAA1522 S100PBP chr1 32762990 chr1 32826902 DUP CALL_659_w6_1 FP call 0.8794 0 0 6 1230 hg19 1.0 33228591.0 1.0 33292503.0 0 6 UNEVALUABLE UNEVALUABLE
659_w6 THEM4 TCHH chr1 151892238 chr1 152108422 DUP CALL_659_w6_2 FP call 0.0182 0 0 2 5233 hg19 1.0 151864714.0 1.0 152080898.0 0 2 UNEVALUABLE UNEVALUABLE
659_w6 CENPO B3GNT3 chr2 24812937 chr19 17808066 BND CALL_659_w6_3 TP call 0.8358 0 0 14 2083 hg19 2.0 25035806.0 19.0 17918875.0 0 14 UNEVALUABLE UNEVALUABLE
659_w6 KIF3C RAB10 chr2 25971431 chr2 26109879 BND CALL_659_w6_4 FP call 0.1393 0 0 21 717 hg19 2.0 26194300.0 2.0 26332748.0 0 21 EVALUABLE BAM_REFUTED
659_w6 SLC35F5 intergenic(SLC35F5,ACTR3) chr2 113742749 chr2 113794369 DUP CALL_659_w6_5 FP call 0.5494 0 0 659 2 hg19 2.0 114500326.0 2.0 114551946.0 0 2 UNEVALUABLE UNEVALUABLE
659_w6 TRPM8 NIT1 chr2 233974466 chr1 161119376 BND CALL_659_w6_6 FP call 0.0297 0 0 4 1566 hg19 2.0 234883110.0 1.0 161089166.0 0 4 UNEVALUABLE UNEVALUABLE
659_w6 intergenic(PPP4R2,PDZRN3) PDZRN3 chr3 73348293 chr3 73384276 DUP CALL_659_w6_7 FP call 0.7363 0 0 1 2579 hg19 3.0 73397444.0 3.0 73433427.0 0 1 UNEVALUABLE UNEVALUABLE
659_w6 ENSG00000272162 HLA-B chr6 10860708 chr6 31355103 DUP CALL_659_w6_8 FP call 0.0008 0 0 2 5406 hg19 6.0 10860941.0 6.0 31322880.0 0 2 UNEVALUABLE UNEVALUABLE
659_w6 HLA-A HLA-B chr6 29943140 chr6 31356680 BND CALL_659_w6_9 FP call 0.0 25 0 8198 6582 hg19 6.0 29910917.0 6.0 31324457.0 25 6582 EVALUABLE BAM_CONFIRMED
659_w6 HLA-C HLA-E chr6 31269383 chr6 30492659 BND CALL_659_w6_10 FP call 0.0 0 0 7210 840 hg19 6.0 31237160.0 6.0 30460436.0 0 840 EVALUABLE BAM_REFUTED
659_w6 HLA-C HLA-F chr6 31271489 chr6 29724141 BND CALL_659_w6_11 FP call 0.0 0 0 5832 2471 hg19 6.0 31239266.0 6.0 29691918.0 0 2471 EVALUABLE BAM_REFUTED
659_w6 intergenic(HLA-DRA,HLA-DRB5) HLA-DRB1 chr6 32473770 chr6 32589785 DUP CALL_659_w6_12 FP call 0.0002 0 0 154 778 hg19 6.0 32441547.0 6.0 32557562.0 0 154 EVALUABLE BAM_REFUTED
659_w6 CUX1 ETV5 chr7 102197906 chr3 186080672 BND CALL_659_w6_13 TP_DUP call 0.0503 0 0 60 8589 hg19 7.0 101841186.0 3.0 185798461.0 0 60 EVALUABLE BAM_REFUTED
659_w6 AOPEP intergenic(PLEK,FBXO48) chr9 95110627 chr2 68433800 BND CALL_659_w6_14 TP_DUP call 0.0164 0 0 5468 0 hg19 9.0 97872909.0 2.0 68660932.0 0 0 UNEVALUABLE UNEVALUABLE
659_w6 SAR1A GRIN2C chr10 70168962 chr17 74852110 BND CALL_659_w6_15 TP call 0.9859 0 0 1 1157 hg19 10.0 71928718.0 17.0 72848249.0 0 1 UNEVALUABLE UNEVALUABLE
659_w6 ZNF503 LRMDA chr10 75401295 chr10 75441282 DEL CALL_659_w6_16 TP call 0.0329 0 0 1335 0 hg19 10.0 77161053.0 10.0 77201040.0 0 0 UNEVALUABLE UNEVALUABLE
659_w6 RNF169 PPP1CC chr11 74777256 chr12 110731855 BND CALL_659_w6_17 FP call 0.9936 0 0 0 757 hg19 11.0 74488301.0 12.0 111169660.0 0 0 UNEVALUABLE UNEVALUABLE
659_w6 intergenic(KRT78,KRT8) TNS2 chr12 52857703 chr12 53054431 DUP CALL_659_w6_18 TP call 0.8762 0 0 8 1326 hg19 12.0 53251487.0 12.0 53448215.0 0 8 UNEVALUABLE UNEVALUABLE
659_w6 MARK3 PPP1R13B chr14 103482125 chr14 103737830 DUP CALL_659_w6_19 TP call 0.9346 0 0 24 879 hg19 14.0 103948462.0 14.0 104204167.0 0 24 EVALUABLE BAM_REFUTED
659_w6 ACSBG1 intergenic(ACSBG1,DNAJA4) chr15 78179653 chr15 78263459 DUP CALL_659_w6_20 TP call 0.8499 0 0 709 1 hg19 15.0 78471995.0 15.0 78555801.0 0 1 UNEVALUABLE UNEVALUABLE
659_w6 DCAF15 RFX1 chr19 13960300 chr19 13970424 BND CALL_659_w6_21 FP call 0.0007 0 0 2135 660 hg19 19.0 14071112.0 19.0 14081236.0 0 660 EVALUABLE BAM_REFUTED
659_w6 ACTN4 HNRNPL chr19 38709898 chr19 38838476 DUP CALL_659_w6_22 TP call 0.9353 0 0 738 993 hg19 19.0 39200538.0 19.0 39329116.0 0 738 EVALUABLE BAM_REFUTED
659_w6 intergenic(.,.) HLA-DQB2 chr6_GL000256v2_alt 4057243 chr6 32756205 BND CALL_659_w6_23 FP call 0.0 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_w6 ARID1A KIAA1522 chr1 26771278 chr1 32747321 DELETION TRUTH_659_w6_24 TRUTH truth 41.0 0 0 1414 16 hg19 1.0 27097769.0 1.0 33212922.0 0 16 UNEVALUABLE UNEVALUABLE
659_w6 CENPO B3GNT3 chr2 24812948 chr19 17808062 TRANSLOCATION TRUTH_659_w6_25 TRUTH truth 84.0 0 0 14 2083 hg19 2.0 25035817.0 19.0 17918871.0 0 14 UNEVALUABLE UNEVALUABLE
659_w6 intergenic(PLEK,FBXO48) FANCC chr2 68433797 chr9 95110626 TRANSLOCATION TRUTH_659_w6_26 TRUTH truth 40.0 0 0 0 5461 hg19 2.0 68660929.0 9.0 97872908.0 0 0 UNEVALUABLE UNEVALUABLE
659_w6 ETV5 CUX1 chr3 186080671 chr7 102197905 TRANSLOCATION TRUTH_659_w6_27 TRUTH truth 59.0 0 0 8590 60 hg19 3.0 185798460.0 7.0 101841185.0 0 60 EVALUABLE BAM_REFUTED
659_w6 SAR1A GRIN2C chr10 70168961 chr17 74852108 TRANSLOCATION TRUTH_659_w6_28 TRUTH truth 44.0 0 0 1 1157 hg19 10.0 71928717.0 17.0 72848247.0 0 1 UNEVALUABLE UNEVALUABLE
659_w6 ZNF503 LRMDA chr10 75401294 chr10 75441281 DELETION TRUTH_659_w6_29 TRUTH truth 36.0 0 0 1335 0 hg19 10.0 77161052.0 10.0 77201039.0 0 0 UNEVALUABLE UNEVALUABLE
659_w6 intergenic(KRT78,KRT8) TNS2 chr12 52857702 chr12 53054430 DUPLICATION TRUTH_659_w6_30 TRUTH truth 47.0 0 0 8 1327 hg19 12.0 53251486.0 12.0 53448214.0 0 8 UNEVALUABLE UNEVALUABLE
659_w6 MARK3 PPP1R13B chr14 103482124 chr14 103737829 DUPLICATION TRUTH_659_w6_31 TRUTH truth 67.0 0 0 24 879 hg19 14.0 103948461.0 14.0 104204166.0 0 24 EVALUABLE BAM_REFUTED
659_w6 ACSBG1 intergenic(ACSBG1,DNAJA4) chr15 78179652 chr15 78263458 DUPLICATION TRUTH_659_w6_32 TRUTH truth 26.0 0 0 709 1 hg19 15.0 78471994.0 15.0 78555800.0 0 1 UNEVALUABLE UNEVALUABLE
659_w6 ACTN4 HNRNPL chr19 38709897 chr19 38838475 DUPLICATION TRUTH_659_w6_33 TRUTH truth 37.0 0 0 738 991 hg19 19.0 39200537.0 19.0 39329115.0 0 738 EVALUABLE BAM_REFUTED
659_b2G RAB5C BRCA1 chr17 42155042 chr17 43097352 DUP CALL_659_b2G_0 FP call 0.0001 0 0 12 8801 hg19 17 40307060.0 17 41249369.0 0 12 UNEVALUABLE UNEVALUABLE
659_b2G EWSR1 ZNF444 chr22 29288542 chr19 56159774 BND CALL_659_b2G_1 TP_DUP call 1.0 0 0 9137 3587 hg19 22 29684531.0 19 56671143.0 0 3587 EVALUABLE BAM_REFUTED
659_b2G ZNF444 EWSR1 chr19 56159695 chr22 29288555 TRANSLOCATION TRUTH_659_b2G_2 TRUTH truth 902.0 0 0 3537 9240 hg19 19 56671064.0 22 29684544.0 0 3537 EVALUABLE BAM_REFUTED
659_bgw PLCH2 PANK4 chr1 2504966 chr1 2508894 DEL CALL_659_bgw_0 TP call 0.9907 0 0 2450 599 hg19 1 2436405.0 1 2440333.0 0 599 EVALUABLE BAM_REFUTED
659_bgw PLCH2 PANK4 chr1 2504965 chr1 2508893 DELETION TRUTH_659_bgw_1 TRUTH truth 154.0 0 0 2451 599 hg19 1 2436404.0 1 2440332.0 0 599 EVALUABLE BAM_REFUTED
659_bgw intergenic(SPATA31C1,ENSG00000283205) AR chr9 87944836 chrX 67546653 TRANSLOCATION TRUTH_659_bgw_2 TRUTH truth 30.0 2 2 1319 5602 hg19 9 90559751.0 X 66766495.0 4 1319 EVALUABLE BAM_CONFIRMED
659_bgw intergenic(ADAMTS5,N6AMT1) DIP2A chr21 27185415 chr21 46498821 DELETION TRUTH_659_bgw_3 TRUTH truth 118.0 0 0 1 1522 hg19 21 28557734.0 21 47918734.0 0 1 UNEVALUABLE UNEVALUABLE
659_bl1 FAM78B ETV1 chr1 166084206 chr7 13978417 BND CALL_659_bl1_0 FP call 0.0 0 0 2 4 hg19 1 166053443.0 7 14018042.0 0 2 UNEVALUABLE UNEVALUABLE
659_bl1 FH FMN1 chr1 241498759 chr15 32845642 BND CALL_659_bl1_1 FP call 0.0 0 0 13 0 hg19 1 241662059.0 15 33137843.0 0 0 UNEVALUABLE UNEVALUABLE
659_bl1 intergenic(CNTNAP5,GYPC) S1PR2 chr2 125813466 chr19 10221826 BND CALL_659_bl1_2 FP call 0.0 0 0 4 8 hg19 2 126571043.0 19 10332502.0 0 4 UNEVALUABLE UNEVALUABLE
659_bl1 MYO1B MFSD6 chr2 191360639 chr2 190429263 BND CALL_659_bl1_3 FP call 0.0 0 0 365 17 hg19 2 192225365.0 2 191293989.0 0 17 UNEVALUABLE UNEVALUABLE
659_bl1 BARD1 FSIP1 chr2 214728412 chr15 39752185 BND CALL_659_bl1_4 FP call 0.0 0 0 2263 0 hg19 2 215593136.0 15 40044386.0 0 0 UNEVALUABLE UNEVALUABLE
659_bl1 intergenic(SPHKAP,PID1) CHEK1 chr2 228686017 chr11 125657101 BND CALL_659_bl1_5 FP call 0.0 0 0 1 2 hg19 2 229550733.0 11 125526996.0 0 1 UNEVALUABLE UNEVALUABLE
659_bl1 HTR3E NTRK3 chr3 184104638 chr15 87990051 BND CALL_659_bl1_6 FP call 0.0 0 0 1385 1 hg19 3 183822426.0 15 88533282.0 0 1 UNEVALUABLE UNEVALUABLE
659_bl1 intergenic(NUDT12,EFNA5) TRIML1 chr5 103875126 chr4 188142302 BND CALL_659_bl1_7 FP call 0.0 0 0 0 687 hg19 5 103210827.0 4 189063456.0 0 0 UNEVALUABLE UNEVALUABLE
659_bl1 KCNQ5 INSL6 chr6 73170565 chr9 5128210 BND CALL_659_bl1_8 FP call 0.0 0 0 25 7 hg19 6 73880288.0 9 5128210.0 0 7 UNEVALUABLE UNEVALUABLE
659_bl1 intergenic(TRAF3IP2,FYN) FYN chr6 111660302 chr6 111660413 BND CALL_659_bl1_9 FP call 0.0 0 0 0 0 hg19 6 111981505.0 6 111981616.0 0 0 UNEVALUABLE UNEVALUABLE
659_bl1 PRKN S1PR2 chr6 162710375 chr19 10221825 BND CALL_659_bl1_10 FP call 0.0 0 0 7 8 hg19 6 163131407.0 19 10332501.0 0 7 UNEVALUABLE UNEVALUABLE
659_bl1 PMS2 intergenic(PCDH17,DIAPH3) chr7 6006354 chr13 58299254 BND CALL_659_bl1_11 FP call 0.0 0 0 2081 8 hg19 7 6045985.0 13 58873388.0 0 8 UNEVALUABLE UNEVALUABLE
659_bl1 ADCY8 INSL6 chr8 130810348 chr9 5128082 BND CALL_659_bl1_12 FP call 0.0 0 0 4 7 hg19 8 131822594.0 9 5128082.0 0 4 UNEVALUABLE UNEVALUABLE
659_bl1 RORB ATRX chr9 74537240 chrX 77506998 BND CALL_659_bl1_13 FP call 0.0 0 0 0 2 hg19 9 77152156.0 X 76762476.0 0 0 UNEVALUABLE UNEVALUABLE
659_bl1 KIAA1217 ATXN7 chr10 24239750 chr3 64002547 BND CALL_659_bl1_14 FP call 0.0 0 0 434 0 hg19 10 24528679.0 3 63988223.0 0 0 UNEVALUABLE UNEVALUABLE
659_bl1 HK1 RSPO3 chr10 69324985 chr6 127138035 BND CALL_659_bl1_15 FP call 0.0 0 0 36 0 hg19 10 71084741.0 6 127459180.0 0 0 UNEVALUABLE UNEVALUABLE
659_bl1 intergenic(CCSER2,GRID1) CDK2 chr10 85369206 chr12 55972789 BND CALL_659_bl1_16 FP call 0.0 0 0 2 3 hg19 10 87128962.0 12 56366573.0 0 2 UNEVALUABLE UNEVALUABLE
659_bl1 ETV6 intergenic(H3-5,RESF1) chr12 11807909 chr12 31802055 DUP CALL_659_bl1_17 FP call 0.0 0 0 0 8 hg19 12 11960843.0 12 31954989.0 0 0 UNEVALUABLE UNEVALUABLE
659_bl1 SYT1 NTRK2 chr12 79102132 chr9 84879242 BND CALL_659_bl1_18 FP call 0.0 0 0 0 1 hg19 12 79495912.0 9 87494157.0 0 0 UNEVALUABLE UNEVALUABLE
659_bl1 intergenic(SLC10A2,DAOA) FGF14 chr13 103969264 chr13 101716945 BND CALL_659_bl1_19 FP call 0.0 0 0 1 0 hg19 13 104621614.0 13 102369295.0 0 0 UNEVALUABLE UNEVALUABLE
659_bl1 ENSG00000284906 ETV1 chr15 30679308 chr7 13978418 BND CALL_659_bl1_20 FP call 0.0 0 0 0 4 hg19 15 30971511.0 7 14018043.0 0 0 UNEVALUABLE UNEVALUABLE
659_bl1 IDH2 intergenic(MEGF11,DIS3L) chr15 90083077 chr15 66287617 BND CALL_659_bl1_21 FP call 0.0 0 0 7 2 hg19 15 90626309.0 15 66579955.0 0 2 UNEVALUABLE UNEVALUABLE
659_bl1 intergenic(XYLT1,NPIPA8) ETV1 chr16 17783335 chr7 13978418 BND CALL_659_bl1_22 FP call 0.0 0 0 0 4 hg19 16 17877192.0 7 14018043.0 0 0 UNEVALUABLE UNEVALUABLE
659_bl1 ZP2 ETV1 chr16 21207636 chr7 13978418 BND CALL_659_bl1_23 FP call 0.0 0 0 32 4 hg19 16 21218957.0 7 14018043.0 0 4 UNEVALUABLE UNEVALUABLE
659_bl1 intergenic(ELAC2,HS3ST3A1) ETV1 chr17 13224011 chr7 13978418 BND CALL_659_bl1_24 FP call 0.0 0 0 16 4 hg19 17 13127328.0 7 14018043.0 0 4 UNEVALUABLE UNEVALUABLE
659_bl1 SPIRE1 ETV1 chr18 12533933 chr7 13978418 BND CALL_659_bl1_25 FP call 0.0 0 0 0 4 hg19 18 12533932.0 7 14018043.0 0 0 UNEVALUABLE UNEVALUABLE
659_bl1 intergenic(CDH7,CDH19) C2CD5 chr18 65902495 chr12 22453921 BND CALL_659_bl1_26 FP call 0.0 0 0 0 522 hg19 18 63569731.0 12 22606855.0 0 0 UNEVALUABLE UNEVALUABLE
659_bl1 ENSG00000267179 ENSG00000286098 chr19 11979104 chr19 12023783 DEL CALL_659_bl1_27 FP call 0.0 0 0 5449 0 hg19 19 12089919.0 19 12134598.0 0 0 UNEVALUABLE UNEVALUABLE
659_bl1 ENSG00000286235 ADAR chr20 5984953 chr1 154582418 BND CALL_659_bl1_28 TP_DUP call 0.9446 0 0 625 0 hg19 20 5965599.0 1 154554894.0 0 0 UNEVALUABLE UNEVALUABLE
659_bl1 TFIP11 intergenic(CRYBA4,MN1) chr22 26494859 chr22 27512592 BND CALL_659_bl1_29 FP call 0.8986 0 0 1056 1 hg19 22 26890825.0 22 27908553.0 0 1 UNEVALUABLE UNEVALUABLE
659_bl1 intergenic(ITGB1BP2,TAF1) NOTCH2 chrX 71347217 chr1 120100545 BND CALL_659_bl1_30 FP call 0.0 0 0 35 413 hg19 X 70567067.0 1 120643132.0 0 35 EVALUABLE BAM_REFUTED
659_bl1 FRMPD3 SETD2 chrX 107467024 chr3 47101598 BND CALL_659_bl1_31 FP call 0.0 0 0 0 577 hg19 X 106710254.0 3 47143088.0 0 0 UNEVALUABLE UNEVALUABLE
659_bl1 intergenic(FRMD7,RAP2C) PAX3 chrX 132150557 chr2 222218599 BND CALL_659_bl1_32 FP call 0.0 0 0 0 7731 hg19 X 131284585.0 2 223083318.0 0 0 UNEVALUABLE UNEVALUABLE
659_bl1 ADAR MCM8 chr1 154582417 chr20 5984952 TRANSLOCATION TRUTH_659_bl1_33 TRUTH truth 22.0 0 0 0 625 hg19 1 154554893.0 20 5965598.0 0 0 UNEVALUABLE UNEVALUABLE
659_bl1 intergenic(PBX1,LMX1A) GABRP chr1 165065417 chr5 170794245 TRANSLOCATION TRUTH_659_bl1_34 TRUTH truth 9.0 0 0 16 297 hg19 1 165034654.0 5 170221249.0 0 16 UNEVALUABLE UNEVALUABLE
659_bl1 GALNT2 intergenic(SDK2,RPL38) chr1 230243315 chr17 73844898 TRANSLOCATION TRUTH_659_bl1_35 TRUTH truth 12.0 0 0 1216 10 hg19 1 230379061.0 17 71841037.0 0 10 UNEVALUABLE UNEVALUABLE
659_bl1 CTNNA2 DAP chr2 79855258 chr5 10681072 TRANSLOCATION TRUTH_659_bl1_36 TRUTH truth 13.0 0 0 0 1494 hg19 2 80082384.0 5 10681184.0 0 0 UNEVALUABLE UNEVALUABLE
659_bl1 intergenic(SOX2,ATP11B) PRKCH chr3 182352659 chr14 61549739 TRANSLOCATION TRUTH_659_bl1_37 TRUTH truth 10.0 0 0 0 684 hg19 3 182070447.0 14 62016457.0 0 0 UNEVALUABLE UNEVALUABLE
659_bl1 PDGFRA SSH1 chr4 54269608 chr12 108851640 TRANSLOCATION TRUTH_659_bl1_38 TRUTH truth 23.0 0 0 9101 0 hg19 4 55135775.0 12 109245416.0 0 0 UNEVALUABLE UNEVALUABLE
659_bmI BNC2 PLIN2 chr9 16751503 chr9 19121088 BND CALL_659_bmI_0 TP call 0.991 0 0 4 759 hg19 9 16751501.0 9 19121086.0 0 4 UNEVALUABLE UNEVALUABLE
659_bmI SH3GL2 intergenic(PLIN2,DENND4C) chr9 17793409 chr9 19213769 BND CALL_659_bmI_1 FP call 0.9999 0 0 510 5 hg19 9 17793407.0 9 19213767.0 0 5 UNEVALUABLE UNEVALUABLE
659_bmI intergenic(TUSC1,CAAP1) PLIN2 chr9 26409716 chr9 19119745 BND CALL_659_bmI_2 TP_DUP call 0.9935 0 0 3 402 hg19 9 26409714.0 9 19119743.0 0 3 UNEVALUABLE UNEVALUABLE
659_bmI intergenic(IFT74,TEK) PLIN2 chr9 27070895 chr9 19119729 BND CALL_659_bmI_3 TP_DUP call 0.9917 0 0 4 402 hg19 9 27070893.0 9 19119727.0 0 4 UNEVALUABLE UNEVALUABLE
659_bmI RHNO1 intergenic(KITLG,DUSP6) chr12 2888116 chr12 88691553 DEL CALL_659_bmI_4 TP call 0.9932 0 0 1668 6 hg19 12 2997282.0 12 89085330.0 0 6 UNEVALUABLE UNEVALUABLE
659_bmI LRP1 intergenic(MSRB3,HMGA2) chr12 57199264 chr12 65536317 DEL CALL_659_bmI_5 TP call 0.0352 0 0 992 6 hg19 12 57593047.0 12 65930097.0 0 6 UNEVALUABLE UNEVALUABLE
659_bmI NUP107 YAF2 chr12 68732663 chr12 42200092 BND CALL_659_bmI_6 TP_DUP call 0.9994 0 0 335 6 hg19 12 69126443.0 12 42593894.0 0 6 UNEVALUABLE UNEVALUABLE
659_bmI intergenic(MGAT4C,C12orf50) APAF1 chr12 87366653 chr12 98670999 DUP CALL_659_bmI_7 FP call 0.9813 0 0 4 345 hg19 12 87760430.0 12 99064777.0 0 4 UNEVALUABLE UNEVALUABLE
659_bmI ATP2B1 intergenic(NEDD1,TMPO) chr12 89609957 chr12 97895615 DEL CALL_659_bmI_8 FP call 0.2174 0 0 791 8 hg19 12 90003734.0 12 98289393.0 0 8 UNEVALUABLE UNEVALUABLE
659_bmI VPS33A SETD1B chr12 122249940 chr12 121817085 BND CALL_659_bmI_9 TP_DUP call 0.8841 0 0 671 2843 hg19 12 122734487.0 12 122254991.0 0 671 EVALUABLE BAM_REFUTED
659_bmI TMEM132C intergenic(LRIG3,SLC16A7) chr12 128616322 chr12 59456822 BND CALL_659_bmI_10 TP_DUP call 0.9954 0 0 917 17 hg19 12 129100867.0 12 59850603.0 0 17 UNEVALUABLE UNEVALUABLE
659_bmI NPAS3 SERPINA12 chr14 33360664 chr14 94497872 DEL CALL_659_bmI_11 TP call 0.9995 0 0 2 1950 hg19 14 33829870.0 14 94964209.0 0 2 UNEVALUABLE UNEVALUABLE
659_bmI DICER1 intergenic(BRMS1L,MBIP) chr14 95108066 chr14 35966057 BND CALL_659_bmI_12 TP_DUP call 0.9802 0 0 4474 4 hg19 14 95574403.0 14 36435263.0 0 4 UNEVALUABLE UNEVALUABLE
659_bmI intergenic(TOP2A,IGFBP4) TSPOAP1 chr17 40434274 chr17 58311908 DEL CALL_659_bmI_13 TP call 0.976 0 0 5 4117 hg19 17 38590526.0 17 56389269.0 0 5 UNEVALUABLE UNEVALUABLE
659_bmI SMIM36 IGFBP7 chr17 55475850 chr4 57110011 BND CALL_659_bmI_14 TP_DUP call 0.8415 0 0 2 2356 hg19 17 53553211.0 4 57976177.0 0 2 UNEVALUABLE UNEVALUABLE
659_bmI IGFBP7 SMIM36 chr4 57110010 chr17 55475849 TRANSLOCATION TRUTH_659_bmI_15 TRUTH truth 157.0 0 0 2356 2 hg19 4 57976176.0 17 53553210.0 0 2 UNEVALUABLE UNEVALUABLE
659_bmI BNC2 PLIN2 chr9 16751502 chr9 19121087 INVERSION TRUTH_659_bmI_16 TRUTH truth 57.0 0 0 4 759 hg19 9 16751500.0 9 19121085.0 0 4 UNEVALUABLE UNEVALUABLE
659_bmI PLIN2 intergenic(IFT74,TEK) chr9 19119725 chr9 27070897 INVERSION TRUTH_659_bmI_17 TRUTH truth 72.0 0 0 402 4 hg19 9 19119723.0 9 27070895.0 0 4 UNEVALUABLE UNEVALUABLE
659_bmI PLIN2 intergenic(TUSC1,CAAP1) chr9 19119742 chr9 26409715 INVERSION TRUTH_659_bmI_18 TRUTH truth 58.0 0 0 402 3 hg19 9 19119740.0 9 26409713.0 0 3 UNEVALUABLE UNEVALUABLE
659_bmI TULP3 intergenic(KITLG,DUSP6) chr12 2888115 chr12 88691552 DELETION TRUTH_659_bmI_19 TRUTH truth 62.0 0 0 1668 6 hg19 12 2997281.0 12 89085329.0 0 6 UNEVALUABLE UNEVALUABLE
659_bmI YAF2 NUP107 chr12 42200089 chr12 68732662 INVERSION TRUTH_659_bmI_20 TRUTH truth 31.0 0 0 6 335 hg19 12 42593891.0 12 69126442.0 0 6 UNEVALUABLE UNEVALUABLE
659_bmI NCKAP5L intergenic(TBX3,MED13L) chr12 49804037 chr12 114710660 INVERSION TRUTH_659_bmI_21 TRUTH truth 46.0 0 0 1209 6 hg19 12 50197820.0 12 115148465.0 0 6 UNEVALUABLE UNEVALUABLE
659_bmI LRP1 intergenic(MSRB3,HMGA2) chr12 57199263 chr12 65536316 DELETION TRUTH_659_bmI_22 TRUTH truth 39.0 0 0 992 6 hg19 12 57593046.0 12 65930096.0 0 6 UNEVALUABLE UNEVALUABLE
659_bmI intergenic(LRIG3,SLC16A7) TMEM132C chr12 59456819 chr12 128616323 INVERSION TRUTH_659_bmI_23 TRUTH truth 67.0 0 0 19 917 hg19 12 59850600.0 12 129100868.0 0 19 UNEVALUABLE UNEVALUABLE
659_bmI intergenic(NEDD1,TMPO) DEPDC4 chr12 97895977 chr12 100262376 DELETION TRUTH_659_bmI_24 TRUTH truth 45.0 0 0 7 575 hg19 12 98289755.0 12 100656154.0 0 7 UNEVALUABLE UNEVALUABLE
659_bmI SETD1B ENSG00000256861 chr12 121817083 chr12 122249938 INVERSION TRUTH_659_bmI_25 TRUTH truth 164.0 0 0 2841 671 hg19 12 122254989.0 12 122734485.0 0 671 EVALUABLE BAM_REFUTED
659_bmI NPAS3 SERPINA12 chr14 33360663 chr14 94497871 DELETION TRUTH_659_bmI_26 TRUTH truth 114.0 0 0 2 1947 hg19 14 33829869.0 14 94964208.0 0 2 UNEVALUABLE UNEVALUABLE
659_bmI intergenic(BRMS1L,MBIP) DICER1 chr14 35966055 chr14 95108066 INVERSION TRUTH_659_bmI_27 TRUTH truth 305.0 0 0 4 4474 hg19 14 36435261.0 14 95574403.0 0 4 UNEVALUABLE UNEVALUABLE
659_bmI intergenic(TOP2A,IGFBP4) TSPOAP1 chr17 40434273 chr17 58311907 DELETION TRUTH_659_bmI_28 TRUTH truth 70.0 0 0 5 4113 hg19 17 38590525.0 17 56389268.0 0 5 UNEVALUABLE UNEVALUABLE
659_bmI intergenic(NDC80,SMCHD1) RALBP1 chr18 2646227 chr18 9535718 INVERSION TRUTH_659_bmI_29 TRUTH truth 114.0 0 0 8 1249 hg19 18 2646226.0 18 9535716.0 0 8 UNEVALUABLE UNEVALUABLE
659_btT ANKRD36 ANKRD36B chr2 97113901 chr2 97589655 BND CALL_659_btT_0 FP call 0.0 1 0 2116 1385 hg19 2 97779638.0 2 98206118.0 1 1385 EVALUABLE BAM_AMBIGUOUS
659_btT ARPC4-TTLL3 PRRT3 chr3 9832871 chr3 9947852 DUP CALL_659_btT_1 TP call 0.0238 0 0 986 3095 hg19 3 9874555.0 3 9989536.0 0 986 EVALUABLE BAM_REFUTED
659_btT CEP44 ALK chr4 174313745 chr2 29224938 BND CALL_659_btT_2 FP call 0.0535 0 0 0 12392 hg19 4 175234896.0 2 29447804.0 0 0 UNEVALUABLE UNEVALUABLE
659_btT C2 intergenic(GTSF1L,TOX2) chr6 31900365 chr20 43790475 BND CALL_659_btT_3 TP call 0.0087 0 0 4882 1 hg19 6 31868142.0 20 42419115.0 0 1 UNEVALUABLE UNEVALUABLE
659_btT SWI5 NUP188 chr9 128276337 chr9 129000028 DUP CALL_659_btT_4 TP call 0.9893 0 0 6568 821 hg19 9 131038616.0 9 131762307.0 0 821 EVALUABLE BAM_REFUTED
659_btT ETV6 SLC15A5 chr12 11866324 chr12 16220453 DUP CALL_659_btT_5 TP call 0.6959 0 0 9702 0 hg19 12 12019258.0 12 16373387.0 0 0 UNEVALUABLE UNEVALUABLE
659_btT EFS ZFHX2 chr14 23359891 chr14 23527624 DUP CALL_659_btT_6 TP call 0.9909 0 0 4430 1248 hg19 14 23829100.0 14 23996833.0 0 1248 EVALUABLE BAM_REFUTED
659_btT CHD3 intergenic(BORCS6,AURKB) chr17 7898511 chr17 8199558 DUP CALL_659_btT_7 FP call 0.9789 0 0 1230 0 hg19 17 7801829.0 17 8102876.0 0 0 UNEVALUABLE UNEVALUABLE
659_btT NCOR1 PIGL chr17 16079980 chr17 16305999 DUP CALL_659_btT_8 TP call 0.9994 0 0 1020 1 hg19 17 15983294.0 17 16209313.0 0 1 UNEVALUABLE UNEVALUABLE
659_btT UNK EVPL chr17 75811753 chr17 76007621 DUP CALL_659_btT_9 TP call 0.9927 0 0 1074 4085 hg19 17 73807834.0 17 74003702.0 0 1074 EVALUABLE BAM_REFUTED
659_btT FBF1 EVPL chr17 75939058 chr17 76005305 DEL CALL_659_btT_10 FP call 0.1735 0 0 18 873 hg19 17 73935139.0 17 74001386.0 0 18 UNEVALUABLE UNEVALUABLE
659_btT intergenic(ZNF337,DEFB115) DNMT3B chr20 31058653 chr20 32762612 DUP CALL_659_btT_11 FP call 0.0008 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_btT L3MBTL1 C2 chr20 43520524 chr6 31900335 BND CALL_659_btT_12 TP_DUP call 0.0883 0 0 0 4780 hg19 20 42149164.0 6 31868112.0 0 0 UNEVALUABLE UNEVALUABLE
659_btT TBX22 intergenic(SH3BGRL,POU3F4) chrX 80022393 chrX 81710355 DUP CALL_659_btT_13 TP call 0.9984 0 0 438 1 hg19 X 79277892.0 X 80965854.0 0 1 UNEVALUABLE UNEVALUABLE
659_btT HLA-A intergenic(ZNF217,BCAS1) chr6 29944945 chr20 53654763 TRANSLOCATION TRUTH_659_btT_14 TRUTH truth 175.0 0 0 9672 18 hg19 6 29912722.0 20 52271302.0 0 18 UNEVALUABLE UNEVALUABLE
659_btT INPP5K SMYD4 chr17 1503574 chr17 1800064 DUPLICATION TRUTH_659_btT_15 TRUTH truth 25.0 0 0 20 3375 hg19 17 1406868.0 17 1703358.0 0 20 EVALUABLE BAM_REFUTED
659_btT C2 intergenic(GTSF1L,TOX2) chr6 31900354 chr20 43790482 TRANSLOCATION TRUTH_659_btT_16 TRUTH truth 38.0 0 0 4845 1 hg19 6 31868131.0 20 42419122.0 0 1 UNEVALUABLE UNEVALUABLE
659_btT C2 L3MBTL1 chr6 31900360 chr20 43520570 TRANSLOCATION TRUTH_659_btT_17 TRUTH truth 170.0 0 0 4864 0 hg19 6 31868137.0 20 42149210.0 0 0 UNEVALUABLE UNEVALUABLE
659_btT NCOR1 PIGL chr17 16079979 chr17 16305998 DUPLICATION TRUTH_659_btT_18 TRUTH truth 64.0 0 0 1016 1 hg19 17 15983293.0 17 16209312.0 0 1 UNEVALUABLE UNEVALUABLE
659_btT TBX22 intergenic(SH3BGRL,POU3F4) chrX 80022392 chrX 81710354 DUPLICATION TRUTH_659_btT_19 TRUTH truth 98.0 0 0 438 1 hg19 X 79277891.0 X 80965853.0 0 1 UNEVALUABLE UNEVALUABLE
659_btT TTLL3 PRRT3 chr3 9832870 chr3 9947851 DUPLICATION TRUTH_659_btT_20 TRUTH truth 30.0 0 0 983 3101 hg19 3 9874554.0 3 9989535.0 0 983 EVALUABLE BAM_REFUTED
659_btT UNK EVPL chr17 75811752 chr17 76007620 DUPLICATION TRUTH_659_btT_21 TRUTH truth 60.0 0 0 1071 4081 hg19 17 73807833.0 17 74003701.0 0 1071 EVALUABLE BAM_REFUTED
659_btT ETV6 SLC15A5 chr12 11866323 chr12 16220452 DUPLICATION TRUTH_659_btT_22 TRUTH truth 91.0 0 0 9692 0 hg19 12 12019257.0 12 16373386.0 0 0 UNEVALUABLE UNEVALUABLE
659_btT SWI5 NUP188 chr9 128276336 chr9 129000027 DUPLICATION TRUTH_659_btT_23 TRUTH truth 209.0 0 0 6568 821 hg19 9 131038615.0 9 131762306.0 0 821 EVALUABLE BAM_REFUTED
659_btT EFS ZFHX2 chr14 23359890 chr14 23527623 DUPLICATION TRUTH_659_btT_24 TRUTH truth 114.0 0 0 4427 1248 hg19 14 23829099.0 14 23996832.0 0 1248 EVALUABLE BAM_REFUTED
659_bvq PLEKHA6 PHF12 chr1 204257613 chr17 28915845 BND CALL_659_bvq_0 TP call 0.9969 0 0 1390 22 hg19 1 204226741.0 17 27242863.0 0 22 EVALUABLE BAM_REFUTED
659_bvq IP6K2 intergenic(POLR2J2,FAM185A) chr3 48689599 chr7 102723148 BND CALL_659_bvq_1 TP call 0.0983 0 0 647 2 hg19 3 48727032.0 7 102363595.0 0 2 UNEVALUABLE UNEVALUABLE
659_bvq DOCK3 NMNAT2 chr3 51143580 chr1 183252701 BND CALL_659_bvq_2 TP_DUP call 0.9925 0 0 13 370 hg19 3 51181011.0 1 183221836.0 0 13 UNEVALUABLE UNEVALUABLE
659_bvq NSD3 ZNF48 chr8 38313270 chr16 30378450 BND CALL_659_bvq_3 TP call 0.9866 0 0 9 1234 hg19 8 38170788.0 16 30389771.0 0 9 UNEVALUABLE UNEVALUABLE
659_bvq ERBB3 intergenic(MYC,GSDMC) chr12 56098820 chr8 128274733 BND CALL_659_bvq_4 TP_DUP call 0.7187 0 0 2389 0 hg19 12 56492604.0 8 129286979.0 0 0 UNEVALUABLE UNEVALUABLE
659_bvq TAOK3 TUBGCP6 chr12 118326274 chr22 50220578 BND CALL_659_bvq_5 TP call 0.9993 0 0 5 12902 hg19 12 118764079.0 22 50659007.0 0 5 UNEVALUABLE UNEVALUABLE
659_bvq BORA intergenic(MYADML2,NOTUM) chr13 72728069 chr17 81948136 BND CALL_659_bvq_6 FP call 0.9988 0 0 1307 10 hg19 13 73302207.0 17 79906012.0 0 10 UNEVALUABLE UNEVALUABLE
659_bvq E4F1 PRSS33 chr16 2235103 chr16 2784196 DUP CALL_659_bvq_7 TP call 0.9981 0 0 4033 437 hg19 16 2285104.0 16 2834197.0 0 437 EVALUABLE BAM_REFUTED
659_bvq SLC39A11 EVPL chr17 72934203 chr17 76019561 DUP CALL_659_bvq_8 TP call 0.0289 0 0 20 1153 hg19 17 70930342.0 17 74015642.0 0 20 EVALUABLE BAM_REFUTED
659_bvq LAMA5 COL9A3 chr20 62332636 chr20 62832609 DUP CALL_659_bvq_9 TP call 0.9884 0 0 1610 597 hg19 20 60907692.0 20 61463961.0 0 597 EVALUABLE BAM_REFUTED
659_bvq MRGBP LAMA5 chr20 62801540 chr20 62308131 BND CALL_659_bvq_10 TP_DUP call 0.9338 0 0 0 2795 hg19 20 61432892.0 20 60883187.0 0 0 UNEVALUABLE UNEVALUABLE
659_bvq ZDHHC8 LMTK3 chr22 20131980 chr19 48494342 BND CALL_659_bvq_11 FP call 0.072 0 0 447 815 hg19 22 20119503.0 19 48997599.0 0 447 EVALUABLE BAM_REFUTED
659_bvq TUBGCP6 intergenic(MAPK8IP2,ARSA) chr22 50219184 chr22 50621168 DUP CALL_659_bvq_12 TP call 0.9384 0 0 10125 0 hg19 22 50657613.0 22 51059596.0 0 0 UNEVALUABLE UNEVALUABLE
659_bvq VCX3A VCX chrX 6533856 chrX 7844137 BND CALL_659_bvq_13 FP call 0.0 4 0 4819 5551 hg19 X 6451897.0 X 7812178.0 4 4819 EVALUABLE BAM_CONFIRMED
659_bvq JADE3 CHD7 chrX 47056097 chr8 60778453 BND CALL_659_bvq_14 FP call 0.0171 0 0 263 0 hg19 X 46915499.0 8 61691012.0 0 0 UNEVALUABLE UNEVALUABLE
659_bvq PAGE2B PAGE2 chrX 55077582 chrX 55091406 DUP CALL_659_bvq_15 FP call 0.0 0 0 995 987 hg19 X 55104015.0 X 55117839.0 0 987 EVALUABLE BAM_REFUTED
659_bvq PLEKHA6 PHF12 chr1 204257612 chr17 28915844 TRANSLOCATION TRUTH_659_bvq_16 TRUTH truth 86.0 0 0 1390 22 hg19 1 204226740.0 17 27242862.0 0 22 EVALUABLE BAM_REFUTED
659_bvq EPCAM MSH2 chr2 47385220 chr2 47508658 DUPLICATION TRUTH_659_bvq_17 TRUTH truth 230.0 0 0 3898 0 hg19 2 47612359.0 2 47735797.0 0 0 UNEVALUABLE UNEVALUABLE
659_bvq NSD3 ZNF48 chr8 38313269 chr16 30378446 TRANSLOCATION TRUTH_659_bvq_18 TRUTH truth 110.0 0 0 9 1235 hg19 8 38170787.0 16 30389767.0 0 9 UNEVALUABLE UNEVALUABLE
659_bvq TAOK3 TUBGCP6 chr12 118326273 chr22 50220577 TRANSLOCATION TRUTH_659_bvq_19 TRUTH truth 278.0 0 0 5 12891 hg19 12 118764078.0 22 50659006.0 0 5 UNEVALUABLE UNEVALUABLE
659_bvq E4F1 PRSS33 chr16 2235102 chr16 2784195 DUPLICATION TRUTH_659_bvq_20 TRUTH truth 170.0 0 0 4033 434 hg19 16 2285103.0 16 2834196.0 0 434 EVALUABLE BAM_REFUTED
659_bvq LAMA5 COL9A3 chr20 62332635 chr20 62832608 DUPLICATION TRUTH_659_bvq_21 TRUTH truth 44.0 0 0 1606 598 hg19 20 60907691.0 20 61463960.0 0 598 EVALUABLE BAM_REFUTED
659_bvq intergenic(MYC,GSDMC) ERBB3 chr8 128274729 chr12 56098819 TRANSLOCATION TRUTH_659_bvq_22 TRUTH truth 225.0 0 0 0 2389 hg19 8 129286975.0 12 56492603.0 0 0 UNEVALUABLE UNEVALUABLE
659_bvq TUBGCP6 intergenic(MAPK8IP2,ARSA) chr22 50219183 chr22 50621167 DUPLICATION TRUTH_659_bvq_23 TRUTH truth 483.0 0 0 10140 0 hg19 22 50657612.0 22 51059595.0 0 0 UNEVALUABLE UNEVALUABLE
659_bvq IP6K2 intergenic(POLR2J2,FAM185A) chr3 48689598 chr7 102723143 TRANSLOCATION TRUTH_659_bvq_24 TRUTH truth 80.0 0 0 647 2 hg19 3 48727031.0 7 102363590.0 0 2 UNEVALUABLE UNEVALUABLE
659_bvq SLC39A11 EVPL chr17 72934202 chr17 76019560 DUPLICATION TRUTH_659_bvq_25 TRUTH truth 143.0 0 0 20 1161 hg19 17 70930341.0 17 74015641.0 0 20 EVALUABLE BAM_REFUTED
659_bvq NMNAT2 DOCK3 chr1 183252700 chr3 51143579 TRANSLOCATION TRUTH_659_bvq_26 TRUTH truth 52.0 0 0 370 14 hg19 1 183221835.0 3 51181010.0 0 14 UNEVALUABLE UNEVALUABLE
659_bvq LAMA5 MRGBP chr20 62308126 chr20 62801541 INVERSION TRUTH_659_bvq_27 TRUTH truth 71.0 0 0 2800 0 hg19 20 60883182.0 20 61432893.0 0 0 UNEVALUABLE UNEVALUABLE
659_bvq TNK1 intergenic(RNF227,KCNAB3) chr17 7384719 chr17 7918830 DUPLICATION TRUTH_659_bvq_28 TRUTH truth 29.0 0 0 2095 2 hg19 17 7288038.0 17 7822148.0 0 2 UNEVALUABLE UNEVALUABLE
659_c53 intergenic(FGF12,MB21D2) MB21D2 chr3 192768797 chr3 192798774 DEL CALL_659_c53_0 TP call 0.9972 0 0 35 4268 hg19 3 192486586.0 3 192516563.0 0 35 EVALUABLE BAM_REFUTED
659_c53 MAS1L intergenic(MAS1L,OR2I1P) chr6 29487555 chr6 29489474 DUP CALL_659_c53_1 TP call 0.8289 0 0 3436 2 hg19 6 29455332.0 6 29457251.0 0 2 UNEVALUABLE UNEVALUABLE
659_c53 intergenic(MOCS1,LRFN2) ATP7B chr6 40162711 chr13 51949752 BND CALL_659_c53_2 FP call 0.8359 0 0 4 2876 hg19 6 40130450.0 13 52523888.0 0 4 UNEVALUABLE UNEVALUABLE
659_c53 intergenic(PRIM2,KHDRBS2) GLP2R chr6 58326632 chr17 9857515 BND CALL_659_c53_3 TP call 0.3739 0 0 0 645 hg19 6 58652910.0 17 9760832.0 0 0 UNEVALUABLE UNEVALUABLE
659_c53 HNRNPK intergenic(NTRK2,AGTPBP1) chr9 83968811 chr9 85442996 BND CALL_659_c53_4 FP call 0.009 0 0 33 1 hg19 9 86583726.0 9 88057911.0 0 1 UNEVALUABLE UNEVALUABLE
659_c53 ATP7B intergenic(OLFM4,PRR20A) chr13 51950033 chr13 57028584 BND CALL_659_c53_5 TP call 0.9151 0 0 3433 0 hg19 13 52524169.0 13 57602718.0 0 0 UNEVALUABLE UNEVALUABLE
659_c53 ATP7B PCDH9 chr13 51950069 chr13 66469492 DEL CALL_659_c53_6 TP call 0.9917 0 0 3417 0 hg19 13 52524205.0 13 67043624.0 0 0 UNEVALUABLE UNEVALUABLE
659_c53 ATP7B intergenic(PCDH17,DIAPH3) chr13 51950285 chr13 57804747 BND CALL_659_c53_7 TP call 0.2663 0 0 2863 5 hg19 13 52524421.0 13 58378881.0 0 5 UNEVALUABLE UNEVALUABLE
659_c53 WRAP53 GUCY2D chr17 7690459 chr17 8004030 BND CALL_659_c53_8 TP call 0.7005 0 0 19 2412 hg19 17 7593777.0 17 7907348.0 0 19 UNEVALUABLE UNEVALUABLE
659_c53 intergenic(KAT14,ZNF133) ARVCF chr20 18252186 chr22 19978927 BND CALL_659_c53_9 TP call 0.9714 0 0 0 1231 hg19 20 18232830.0 22 19966450.0 0 0 UNEVALUABLE UNEVALUABLE
659_c53 CLCN4 ATXN3L chrX 10184587 chrX 13319295 DEL CALL_659_c53_10 TP call 0.9143 0 0 175 1749 hg19 X 10152627.0 X 13337414.0 0 175 EVALUABLE BAM_REFUTED
659_c53 ATXN3L NHS chrX 13319666 chrX 17701950 DEL CALL_659_c53_11 TP call 0.9751 0 0 1392 0 hg19 X 13337785.0 X 17720070.0 0 0 UNEVALUABLE UNEVALUABLE
659_c53 ATP7B intergenic(HS3ST3A1,COX10) chr13 51950141 chr17 13839542 TRANSLOCATION TRUTH_659_c53_12 TRUTH truth 361.0 0 0 3346 6 hg19 13 52524277.0 17 13742859.0 0 6 UNEVALUABLE UNEVALUABLE
659_c53 ATP7B intergenic(OLFM4,PRR20A) chr13 51950079 chr13 57066119 INVERSION TRUTH_659_c53_13 TRUTH truth 910.0 0 0 3408 0 hg19 13 52524215.0 13 57640253.0 0 0 UNEVALUABLE UNEVALUABLE
659_c53 CLCN4 ATXN3L chrX 10184586 chrX 13319294 DELETION TRUTH_659_c53_14 TRUTH truth 27.0 0 0 173 1749 hg19 X 10152626.0 X 13337413.0 0 173 EVALUABLE BAM_REFUTED
659_c53 MAS1L intergenic(MAS1L,OR2I1P) chr6 29487536 chr6 29488985 DELETION TRUTH_659_c53_15 TRUTH truth 40.0 0 0 3489 6 hg19 6 29455313.0 6 29456762.0 0 6 UNEVALUABLE UNEVALUABLE
659_c53 intergenic(KAT14,ZNF133) ARVCF chr20 18252185 chr22 19978923 TRANSLOCATION TRUTH_659_c53_16 TRUTH truth 65.0 0 0 0 1229 hg19 20 18232829.0 22 19966446.0 0 0 UNEVALUABLE UNEVALUABLE
659_c53 ATP7B intergenic(PCDH17,DIAPH3) chr13 51950146 chr13 57804807 INVERSION TRUTH_659_c53_17 TRUTH truth 149.0 0 0 3335 5 hg19 13 52524282.0 13 58378941.0 0 5 UNEVALUABLE UNEVALUABLE
659_c53 ATXN3L NHS chrX 13319665 chrX 17701949 DELETION TRUTH_659_c53_18 TRUTH truth 41.0 0 0 1393 0 hg19 X 13337784.0 X 17720069.0 0 0 UNEVALUABLE UNEVALUABLE
659_c53 ATP7B GLP2R chr13 51950154 chr17 9849240 TRANSLOCATION TRUTH_659_c53_19 TRUTH truth 349.0 0 0 3317 6 hg19 13 52524290.0 17 9752557.0 0 6 UNEVALUABLE UNEVALUABLE
659_c53 WRAP53 GUCY2D chr17 7690458 chr17 8004029 INVERSION TRUTH_659_c53_20 TRUTH truth 25.0 0 0 19 2414 hg19 17 7593776.0 17 7907347.0 0 19 UNEVALUABLE UNEVALUABLE
659_c53 intergenic(PRIM2,KHDRBS2) GLP2R chr6 58326631 chr17 9857513 TRANSLOCATION TRUTH_659_c53_21 TRUTH truth 22.0 0 0 0 645 hg19 6 58652909.0 17 9760830.0 0 0 UNEVALUABLE UNEVALUABLE
659_c53 intergenic(FGF12,MB21D2) MB21D2 chr3 192768796 chr3 192798773 DELETION TRUTH_659_c53_22 TRUTH truth 175.0 0 0 35 4264 hg19 3 192486585.0 3 192516562.0 0 35 EVALUABLE BAM_REFUTED
659_c53 ATP7B PCDH9 chr13 51950068 chr13 66469491 DELETION TRUTH_659_c53_23 TRUTH truth 373.0 0 0 3417 0 hg19 13 52524204.0 13 67043623.0 0 0 UNEVALUABLE UNEVALUABLE
659_cD2 IWS1 KMT2C chr2 127495418 chr7 152154111 BND CALL_659_cD2_0 FP call 0.0001 0 0 371 3183 hg19 2 128252994.0 7 151851196.0 0 371 EVALUABLE BAM_REFUTED
659_cD2 PPARG intergenic(PROK2,RYBP) chr3 12291167 chr3 72140274 BND CALL_659_cD2_1 FP call 0.7103 0 0 0 0 hg19 3 12332666.0 3 72189425.0 0 0 UNEVALUABLE UNEVALUABLE
659_cD2 STT3B CD274 chr3 31631337 chr9 5462776 BND CALL_659_cD2_2 FP call 0.0004 0 0 14 2356 hg19 3 31672829.0 9 5462776.0 0 14 UNEVALUABLE UNEVALUABLE
659_cD2 intergenic(PDCD6IP,ARPP21) ENPP3 chr3 34003983 chr6 131652643 BND CALL_659_cD2_3 TP call 0.9864 0 0 0 858 hg19 3 34045475.0 6 131973783.0 0 0 UNEVALUABLE UNEVALUABLE
659_cD2 PXK ABCC3 chr3 58338369 chr17 50679814 BND CALL_659_cD2_4 TP call 0.7029 0 0 20 462 hg19 3 58324096.0 17 48757175.0 0 20 EVALUABLE BAM_REFUTED
659_cD2 INPP4B ZNF622 chr4 142844939 chr5 16463575 BND CALL_659_cD2_5 FP call 0.0423 0 0 0 1488 hg19 4 143766092.0 5 16463684.0 0 0 UNEVALUABLE UNEVALUABLE
659_cD2 MFSD4B HS3ST5 chr6 111266072 chr6 114247032 BND CALL_659_cD2_6 FP call 0.1906 0 0 2242 0 hg19 6 111587275.0 6 114568196.0 0 0 UNEVALUABLE UNEVALUABLE
659_cD2 KMT2C intergenic(CD8B2,ST6GAL2) chr7 152154101 chr2 106677473 BND CALL_659_cD2_7 FP call 0.0 0 0 3180 1 hg19 7 151851186.0 2 107293929.0 0 1 UNEVALUABLE UNEVALUABLE
659_cD2 FREM1 intergenic(DMRTA1,ELAVL2) chr9 14776086 chr9 23282844 DEL CALL_659_cD2_8 FP call 0.0005 0 0 1389 0 hg19 9 14776084.0 9 23282842.0 0 0 UNEVALUABLE UNEVALUABLE
659_cD2 LIPA intergenic(ZWINT,IPMK) chr10 89226996 chr10 56424934 BND CALL_659_cD2_9 FP call 0.0087 0 0 284 2 hg19 10 90986753.0 10 58184695.0 0 2 UNEVALUABLE UNEVALUABLE
659_cD2 intergenic(YBX3,TAS2R7) VWF chr12 10800999 chr12 5967553 BND CALL_659_cD2_10 FP call 0.376 0 0 13 735 hg19 12 10953598.0 12 6076719.0 0 13 UNEVALUABLE UNEVALUABLE
659_cD2 TAS2R7 VWF chr12 10801951 chr12 6070533 BND CALL_659_cD2_11 FP call 0.0009 0 0 2402 2 hg19 12 10954550.0 12 6179699.0 0 2 UNEVALUABLE UNEVALUABLE
659_cD2 intergenic(LRP6,MANSC1) CDKN1B chr12 12269631 chr12 12718832 DEL CALL_659_cD2_12 TP call 0.5673 0 0 7 2535 hg19 12 12422565.0 12 12871766.0 0 7 UNEVALUABLE UNEVALUABLE
659_cD2 HERC1 SLC37A3 chr15 63775328 chr7 140299543 BND CALL_659_cD2_13 FP call 0.0036 0 0 2188 11 hg19 15 64067527.0 7 139999343.0 0 11 UNEVALUABLE UNEVALUABLE
659_cD2 CEP295NL RNF213 chr17 78891675 chr17 80360105 DEL CALL_659_cD2_14 FP call 0.9536 0 0 4550 792 hg19 17 76887757.0 17 78333905.0 0 792 EVALUABLE BAM_REFUTED
659_cD2 ENSG00000267127 EXOSC8 chr18 80055975 chr13 37002535 BND CALL_659_cD2_15 FP call 0.0216 0 0 0 614 hg19 18 77815975.0 13 37576672.0 0 0 UNEVALUABLE UNEVALUABLE
659_cD2 TMPRSS2 ERG chr21 41500477 chr21 38503285 BND CALL_659_cD2_16 TP_DUP call 0.9869 0 0 10245 6 hg19 21 42872404.0 21 39875209.0 0 6 UNEVALUABLE UNEVALUABLE
659_cD2 intergenic(PDCD6IP,ARPP21) ENPP3 chr3 34003982 chr6 131652642 TRANSLOCATION TRUTH_659_cD2_17 TRUTH truth 30.0 0 0 0 858 hg19 3 34045474.0 6 131973782.0 0 0 UNEVALUABLE UNEVALUABLE
659_cD2 PXK ABCC3 chr3 58338368 chr17 50679811 TRANSLOCATION TRUTH_659_cD2_18 TRUTH truth 28.0 0 0 20 462 hg19 3 58324095.0 17 48757172.0 0 20 EVALUABLE BAM_REFUTED
659_cD2 intergenic(LRP6,MANSC1) CDKN1B chr12 12269630 chr12 12718831 DELETION TRUTH_659_cD2_19 TRUTH truth 89.0 0 0 7 2537 hg19 12 12422564.0 12 12871765.0 0 7 UNEVALUABLE UNEVALUABLE
659_cD2 ERG TMPRSS2 chr21 38503282 chr21 41500478 INVERSION TRUTH_659_cD2_20 TRUTH truth 171.0 0 0 6 10251 hg19 21 39875206.0 21 42872405.0 0 6 UNEVALUABLE UNEVALUABLE
659_cFT intergenic(PARK7,ERRFI1) MDM2 chr1 7986928 chr12 68843539 BND CALL_659_cFT_0 FP call 0.0005 0 0 11 0 hg19 1 8046988.0 12.0 69237319.0 0 0 UNEVALUABLE UNEVALUABLE
659_cFT TACSTD2 intergenic(AMY1C,PRMT6) chr1 58577051 chr1 105647051 DEL CALL_659_cFT_1 TP call 0.0188 0 0 3734 2 hg19 1 59042723.0 1.0 106189673.0 0 2 UNEVALUABLE UNEVALUABLE
659_cFT intergenic(TACSTD2,MYSM1) RB1CC1 chr1 58620264 chr8 52661140 BND CALL_659_cFT_2 TP call 0.9806 0 0 2 1627 hg19 1 59085936.0 8.0 53573700.0 0 2 UNEVALUABLE UNEVALUABLE
659_cFT intergenic(TACSTD2,MYSM1) MDM2 chr1 58620403 chr12 68843113 BND CALL_659_cFT_3 FP call 0.0557 0 0 6 0 hg19 1 59086075.0 12.0 69236893.0 0 0 UNEVALUABLE UNEVALUABLE
659_cFT intergenic(JUN,FGGY) NIPBL chr1 59163207 chr5 37026283 BND CALL_659_cFT_4 TP call 0.9987 0 0 1 229 hg19 1 59628879.0 5.0 37026385.0 0 1 UNEVALUABLE UNEVALUABLE
659_cFT intergenic(JUN,FGGY) RAVER2 chr1 59277924 chr1 64778017 BND CALL_659_cFT_5 FP call 0.0009 0 0 0 1406 hg19 1 59743596.0 1.0 65243700.0 0 0 UNEVALUABLE UNEVALUABLE
659_cFT FGGY FRS2 chr1 59631431 chr12 69574380 BND CALL_659_cFT_6 FP call 0.0 0 0 0 6109 hg19 1 60097103.0 12.0 69968160.0 0 0 UNEVALUABLE UNEVALUABLE
659_cFT FGGY MDM2 chr1 59673809 chr12 68843542 BND CALL_659_cFT_7 FP call 0.0004 0 0 373 0 hg19 1 60139481.0 12.0 69237322.0 0 0 UNEVALUABLE UNEVALUABLE
659_cFT HOOK1 intergenic(JUN,FGGY) chr1 59872965 chr1 59055874 BND CALL_659_cFT_8 FP call 0.0003 0 0 749 2 hg19 1 60338637.0 1.0 59521546.0 0 2 UNEVALUABLE UNEVALUABLE
659_cFT AK5 RB1CC1 chr1 77493656 chr8 52661205 BND CALL_659_cFT_9 FP call 0.0555 0 0 0 1512 hg19 1 77959341.0 8.0 53573765.0 0 0 UNEVALUABLE UNEVALUABLE
659_cFT intergenic(AMY1C,PRMT6) FRS2 chr1 105270968 chr12 69571358 BND CALL_659_cFT_10 TP call 0.9768 0 0 2 1520 hg19 1 105813590.0 12.0 69965138.0 0 2 UNEVALUABLE UNEVALUABLE
659_cFT intergenic(AMY1C,PRMT6) RB1CC1 chr1 105646945 chr8 52661188 BND CALL_659_cFT_11 FP call 0.0149 0 0 2 1527 hg19 1 106189567.0 8.0 53573748.0 0 2 UNEVALUABLE UNEVALUABLE
659_cFT intergenic(AMY1C,PRMT6) MDM2 chr1 105647606 chr12 68844019 BND CALL_659_cFT_12 FP call 0.0001 0 0 2 0 hg19 1 106190228.0 12.0 69237799.0 0 0 UNEVALUABLE UNEVALUABLE
659_cFT GABPB2 MDM2 chr1 151124587 chr12 68843584 BND CALL_659_cFT_13 FP call 0.0002 0 0 7 0 hg19 1 151097063.0 12.0 69237364.0 0 0 UNEVALUABLE UNEVALUABLE
659_cFT SHC1 DNM3 chr1 154969402 chr1 172220094 DUP CALL_659_cFT_14 FP call 0.0171 0 0 422 0 hg19 1 154941878.0 1.0 172189234.0 0 0 UNEVALUABLE UNEVALUABLE
659_cFT CCDC190 UGT3A1 chr1 162839764 chr5 35965525 BND CALL_659_cFT_15 TP call 0.9842 0 0 5 2645 hg19 1 162809554.0 5.0 35965627.0 0 5 UNEVALUABLE UNEVALUABLE
659_cFT intergenic(NUF2,PBX1) DGAT2 chr1 164536727 chr11 75796458 BND CALL_659_cFT_16 TP call 0.9814 0 0 0 767 hg19 1 164505964.0 11.0 75507503.0 0 0 UNEVALUABLE UNEVALUABLE
659_cFT POU2F1 PRRC2C chr1 167407370 chr1 171540584 BND CALL_659_cFT_17 FP call 0.0001 0 0 2 3548 hg19 1 167376607.0 1.0 171509723.0 0 2 UNEVALUABLE UNEVALUABLE
659_cFT CREG1 DNM3 chr1 167553616 chr1 172125539 DEL CALL_659_cFT_18 TP call 0.9605 0 0 1021 1 hg19 1 167522853.0 1.0 172094679.0 0 1 UNEVALUABLE UNEVALUABLE
659_cFT METTL13 intergenic(KCNJ18,WSB1) chr1 171784494 chr17 21972965 BND CALL_659_cFT_19 FP call 0.0 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_cFT intergenic(TNFSF4,PRDX6) C12orf40 chr1 173329630 chr12 39682958 BND CALL_659_cFT_20 TP call 0.998 0 0 0 1348 hg19 1 173298769.0 12.0 40076760.0 0 0 UNEVALUABLE UNEVALUABLE
659_cFT DARS2 MYRFL chr1 173831626 chr12 69881080 BND CALL_659_cFT_21 FP call 0.0 0 0 278 0 hg19 1 173800764.0 12.0 70274860.0 0 0 UNEVALUABLE UNEVALUABLE
659_cFT intergenic(SCRG1,HAND2) PRRC2C chr4 173520348 chr1 171566395 BND CALL_659_cFT_22 FP call 0.0014 0 0 1 1744 hg19 4 174441499.0 1.0 171535534.0 0 1 UNEVALUABLE UNEVALUABLE
659_cFT CTNND2 FRS2 chr5 10992098 chr12 69570405 BND CALL_659_cFT_23 FP call 0.0005 0 0 607 1416 hg19 5 10992210.0 12.0 69964185.0 0 607 EVALUABLE BAM_REFUTED
659_cFT DNAH5 intergenic(CTNND2,DNAH5) chr5 13719022 chr5 13647963 BND CALL_659_cFT_24 FP call 0.9097 0 0 716 2 hg19 5 13719131.0 5.0 13648072.0 0 2 UNEVALUABLE UNEVALUABLE
659_cFT DNAH5 CNTN5 chr5 13788860 chr11 99810082 BND CALL_659_cFT_25 FP call 0.0001 0 0 588 2 hg19 5 13788969.0 11.0 99680813.0 0 2 UNEVALUABLE UNEVALUABLE
659_cFT TRIO JUN chr5 14143568 chr1 58783132 BND CALL_659_cFT_26 FP call 0.008 0 0 379 5771 hg19 5 14143677.0 1.0 59248804.0 0 379 EVALUABLE BAM_REFUTED
659_cFT TARS1 METTL13 chr5 33444941 chr1 171783970 BND CALL_659_cFT_27 FP call 0.0043 0 0 312 3630 hg19 5 33445047.0 1.0 171753110.0 0 312 EVALUABLE BAM_REFUTED
659_cFT UGT3A1 intergenic(ATG4C,FOXD3) chr5 35965548 chr1 62899336 BND CALL_659_cFT_28 FP call 0.1761 0 0 2646 0 hg19 5 35965650.0 1.0 63365007.0 0 0 UNEVALUABLE UNEVALUABLE
659_cFT intergenic(RANBP3L,SLC1A3) ADCY10 chr5 36342001 chr1 167829289 BND CALL_659_cFT_29 TP_DUP call 0.9897 0 0 0 731 hg19 5 36342103.0 1.0 167798527.0 0 0 UNEVALUABLE UNEVALUABLE
659_cFT RB1CC1 UVRAG chr8 52661256 chr11 76116052 BND CALL_659_cFT_30 TP call 0.8688 0 0 1492 465 hg19 8 53573816.0 11.0 75827096.0 0 465 EVALUABLE BAM_REFUTED
659_cFT RB1CC1 TACSTD2 chr8 52661269 chr1 58576801 BND CALL_659_cFT_31 FP call 0.0136 0 0 1490 5118 hg19 8 53573829.0 1.0 59042473.0 0 1490 EVALUABLE BAM_REFUTED
659_cFT ARRB1 MDM2 chr11 75266179 chr12 68843195 BND CALL_659_cFT_32 FP call 0.0 0 0 376 0 hg19 11 74977223.0 12.0 69236975.0 0 0 UNEVALUABLE UNEVALUABLE
659_cFT intergenic(CHORDC1,FAT3) MDM2 chr11 91436879 chr12 68843209 BND CALL_659_cFT_33 FP call 0.0 0 0 0 0 hg19 11 91170045.0 12.0 69236989.0 0 0 UNEVALUABLE UNEVALUABLE
659_cFT intergenic(JRKL,CNTN5) PBXIP1 chr11 97062938 chr1 154946024 BND CALL_659_cFT_34 TP_DUP call 0.8946 0 0 0 2588 hg19 11 96933938.0 1.0 154918500.0 0 0 UNEVALUABLE UNEVALUABLE
659_cFT intergenic(JRKL,CNTN5) DNM3 chr11 97826932 chr1 172131276 BND CALL_659_cFT_35 TP_DUP call 0.2942 0 0 0 473 hg19 11 97697932.0 1.0 172100416.0 0 0 UNEVALUABLE UNEVALUABLE
659_cFT MDM2 TACSTD2 chr12 68843563 chr1 58576749 BND CALL_659_cFT_36 FP call 0.0 0 0 0 5293 hg19 12 69237343.0 1.0 59042421.0 0 0 UNEVALUABLE UNEVALUABLE
659_cFT MDM2 RB1CC1 chr12 68843573 chr8 52661125 BND CALL_659_cFT_37 FP call 0.0 0 0 0 1611 hg19 12 69237353.0 8.0 53573685.0 0 0 UNEVALUABLE UNEVALUABLE
659_cFT MDM2 NEGR1 chr12 68843978 chr1 71775957 BND CALL_659_cFT_38 FP call 0.0 0 0 0 441 hg19 12 69237758.0 1.0 72241640.0 0 0 UNEVALUABLE UNEVALUABLE
659_cFT YEATS4 ADGRL3 chr12 69390695 chr4 61517324 BND CALL_659_cFT_39 FP call 0.7827 0 0 567 1 hg19 12 69784475.0 4.0 62383042.0 0 1 UNEVALUABLE UNEVALUABLE
659_cFT intergenic(.,.) B4GALT3 chrUn_GL000195v1 54804 chr1 161175842 BND CALL_659_cFT_40 FP call 0.0107 -1 -1 0 0 hg19 chr7_gl000195_random 54804.0 1.0 161145632.0 -2 0 UNEVALUABLE UNEVALUABLE
659_cFT TACSTD2 ALDH9A1 chr1 58576799 chr1 165685142 DUPLICATION TRUTH_659_cFT_41 TRUTH truth 46.0 0 0 5132 0 hg19 1 59042471.0 1.0 165654379.0 0 0 UNEVALUABLE UNEVALUABLE
659_cFT TACSTD2 intergenic(PLA2G4A,BRINP3) chr1 58576802 chr1 187425247 DUPLICATION TRUTH_659_cFT_42 TRUTH truth 52.0 0 0 5118 6 hg19 1 59042474.0 1.0 187394379.0 0 6 UNEVALUABLE UNEVALUABLE
659_cFT TACSTD2 intergenic(AMY1C,PRMT6) chr1 58577050 chr1 105647050 DELETION TRUTH_659_cFT_43 TRUTH truth 217.0 0 0 3736 2 hg19 1 59042722.0 1.0 106189672.0 0 2 UNEVALUABLE UNEVALUABLE
659_cFT intergenic(TACSTD2,MYSM1) RB1CC1 chr1 58620263 chr8 52661139 TRANSLOCATION TRUTH_659_cFT_44 TRUTH truth 126.0 0 0 2 1630 hg19 1 59085935.0 8.0 53573699.0 0 2 UNEVALUABLE UNEVALUABLE
659_cFT intergenic(JUN,FGGY) NIPBL chr1 59163206 chr5 37026281 TRANSLOCATION TRUTH_659_cFT_45 TRUTH truth 36.0 0 0 1 229 hg19 1 59628878.0 5.0 37026383.0 0 1 UNEVALUABLE UNEVALUABLE
659_cFT intergenic(AMY1C,PRMT6) FRS2 chr1 105270967 chr12 69571357 TRANSLOCATION TRUTH_659_cFT_46 TRUTH truth 682.0 0 0 2 1520 hg19 1 105813589.0 12.0 69965137.0 0 2 UNEVALUABLE UNEVALUABLE
659_cFT PBXIP1 intergenic(JRKL,CNTN5) chr1 154946023 chr11 97062937 TRANSLOCATION TRUTH_659_cFT_47 TRUTH truth 63.0 0 0 2589 0 hg19 1 154918499.0 11.0 96933937.0 0 0 UNEVALUABLE UNEVALUABLE
659_cFT CCDC190 UGT3A1 chr1 162839763 chr5 35965524 TRANSLOCATION TRUTH_659_cFT_48 TRUTH truth 538.0 0 0 5 2645 hg19 1 162809553.0 5.0 35965626.0 0 5 UNEVALUABLE UNEVALUABLE
659_cFT intergenic(NUF2,PBX1) DGAT2 chr1 164536726 chr11 75796456 TRANSLOCATION TRUTH_659_cFT_49 TRUTH truth 156.0 0 0 0 765 hg19 1 164505963.0 11.0 75507501.0 0 0 UNEVALUABLE UNEVALUABLE
659_cFT CREG1 DNM3 chr1 167553615 chr1 172125538 DELETION TRUTH_659_cFT_50 TRUTH truth 192.0 0 0 1021 1 hg19 1 167522852.0 1.0 172094678.0 0 1 UNEVALUABLE UNEVALUABLE
659_cFT ADCY10 intergenic(RANBP3L,SLC1A3) chr1 167829287 chr5 36342000 TRANSLOCATION TRUTH_659_cFT_51 TRUTH truth 66.0 0 0 731 0 hg19 1 167798525.0 5.0 36342102.0 0 0 UNEVALUABLE UNEVALUABLE
659_cFT DNM3 intergenic(JRKL,CNTN5) chr1 172131275 chr11 97826931 TRANSLOCATION TRUTH_659_cFT_52 TRUTH truth 42.0 0 0 473 0 hg19 1 172100415.0 11.0 97697931.0 0 0 UNEVALUABLE UNEVALUABLE
659_cFT intergenic(TNFSF4,PRDX6) C12orf40 chr1 173329629 chr12 39682955 TRANSLOCATION TRUTH_659_cFT_53 TRUTH truth 590.0 0 0 0 1348 hg19 1 173298768.0 12.0 40076757.0 0 0 UNEVALUABLE UNEVALUABLE
659_cFT RB1CC1 UVRAG chr8 52661253 chr11 76116069 TRANSLOCATION TRUTH_659_cFT_54 TRUTH truth 156.0 0 0 1494 465 hg19 8 53573813.0 11.0 75827113.0 0 465 EVALUABLE BAM_REFUTED
659_cIW ANKRD36 ANKRD36B chr2 97113923 chr2 97589623 BND CALL_659_cIW_0 FP call 0.0 2 0 2090 1256 hg19 2 97779660.0 2 98206086.0 2 1256 EVALUABLE BAM_AMBIGUOUS
659_cIW intergenic(ZEB2,ACVR2A) TRMT10C chr2 144783370 chr3 101565483 BND CALL_659_cIW_1 FP call 0.8077 0 0 0 2636 hg19 2 145540937.0 3 101284327.0 0 0 UNEVALUABLE UNEVALUABLE
659_cIW TTC30B intergenic(AGPS,TTC30A) chr2 177550833 chr2 177586123 DEL CALL_659_cIW_2 FP call 0.0388 0 0 2639 0 hg19 2 178415561.0 2 178450851.0 0 0 UNEVALUABLE UNEVALUABLE
659_cIW CERKL PPP1R1C chr2 181536044 chr2 182047875 DUP CALL_659_cIW_3 FP call 0.0677 0 0 72 0 hg19 2 182400771.0 2 182912602.0 0 0 UNEVALUABLE UNEVALUABLE
659_cIW intergenic(LCORL,SLIT2) NPBWR1 chr4 18650644 chr8 52940316 BND CALL_659_cIW_4 TP call 0.9995 0 0 0 3890 hg19 4 18652267.0 8 53852876.0 0 0 UNEVALUABLE UNEVALUABLE
659_cIW intergenic(IRX2,IRX1) FGF9 chr5 2861353 chr13 21701366 BND CALL_659_cIW_5 FP call 0.02 0 0 2 919 hg19 5 2861467.0 13 22275505.0 0 2 UNEVALUABLE UNEVALUABLE
659_cIW intergenic(H3C3,H1-2) H1-2 chr6 26053434 chr6 26056080 DEL CALL_659_cIW_6 TP call 0.7161 0 0 10 2081 hg19 6 26053662.0 6 26056308.0 0 10 UNEVALUABLE UNEVALUABLE
659_cIW SYNE1 TRMT10C chr6 152416690 chr3 101566231 BND CALL_659_cIW_7 FP call 0.0063 0 0 2871 941 hg19 6 152737825.0 3 101285075.0 0 941 EVALUABLE BAM_REFUTED
659_cIW LRGUK SLC35B4 chr7 134163469 chr7 134316301 DEL CALL_659_cIW_8 TP call 0.9464 0 0 697 461 hg19 7 133848221.0 7 134001053.0 0 461 EVALUABLE BAM_REFUTED
659_cIW intergenic(TTI2,RNF122) RNF122 chr8 33540310 chr8 33558671 DEL CALL_659_cIW_9 FP call 0.0038 0 0 242 672 hg19 8 33397828.0 8 33416189.0 0 242 EVALUABLE BAM_REFUTED
659_cIW intergenic(OPRK1,ATP6V1H) TRMT10C chr8 53381511 chr3 101565969 BND CALL_659_cIW_10 FP call 0.0381 0 0 3 1454 hg19 8 54294071.0 3 101284813.0 0 3 UNEVALUABLE UNEVALUABLE
659_cIW intergenic(FZD8,ANKRD30A) NAMPT chr10 36522869 chr7 106250936 BND CALL_659_cIW_11 FP call 0.0 0 0 1442 294 hg19 10 36811797.0 7 105891382.0 0 294 EVALUABLE BAM_REFUTED
659_cIW intergenic(OR4A5,TRIM48) HNRNPUL2 chr11 54963109 chr11 62722196 DEL CALL_659_cIW_12 FP call 0.1938 0 0 0 1792 hg19 11 54730585.0 11 62489668.0 0 0 UNEVALUABLE UNEVALUABLE
659_cIW ZFP36L1 intergenic(ZFP36L1,ACTN1) chr14 68792541 chr14 68796365 DEL CALL_659_cIW_13 FP call 0.0074 0 0 1514 2162 hg19 14 69259258.0 14 69263082.0 0 1514 EVALUABLE BAM_REFUTED
659_cIW PIPOX SPOP chr17 29048047 chr17 49601976 BND CALL_659_cIW_14 FP call 0.2766 0 0 0 2152 hg19 17 27375065.0 17 47679338.0 0 0 UNEVALUABLE UNEVALUABLE
659_cIW RAB11FIP4 RARA chr17 31412128 chr17 40343479 DUP CALL_659_cIW_15 TP call 0.1142 0 0 0 12345 hg19 17 29739146.0 17 38499731.0 0 0 UNEVALUABLE UNEVALUABLE
659_cIW CDK12 THRA chr17 39533204 chr17 40074016 DUP CALL_659_cIW_16 FP call 0.0 0 0 0 330 hg19 17 37689457.0 17 38230269.0 0 0 UNEVALUABLE UNEVALUABLE
659_cIW RARA intergenic(COL1A1,TMEM92) chr17 40341750 chr17 50207610 DUP CALL_659_cIW_17 TP_DUP call 0.227 0 0 15619 1 hg19 17 38498002.0 17 48284971.0 0 1 UNEVALUABLE UNEVALUABLE
659_cIW ITGA3 RARA chr17 50061341 chr17 40332189 BND CALL_659_cIW_18 FP call 0.0 0 0 1 13261 hg19 17 48138705.0 17 38488441.0 0 1 UNEVALUABLE UNEVALUABLE
659_cIW intergenic(CA10,KIF2B) ABCC3 chr17 52245074 chr17 50675645 BND CALL_659_cIW_19 TP_DUP call 0.0094 0 0 0 2474 hg19 17 50322434.0 17 48753006.0 0 0 UNEVALUABLE UNEVALUABLE
659_cIW intergenic(LCORL,SLIT2) NPBWR1 chr4 18650643 chr8 52940313 TRANSLOCATION TRUTH_659_cIW_20 TRUTH truth 66.0 0 0 0 3882 hg19 4 18652266.0 8 53852873.0 0 0 UNEVALUABLE UNEVALUABLE
659_cIW C6 TAF1D chr5 41142860 chr11 93733464 TRANSLOCATION TRUTH_659_cIW_21 TRUTH truth 61.0 0 0 581 1 hg19 5 41142962.0 11 93466630.0 0 1 UNEVALUABLE UNEVALUABLE
659_cIW intergenic(H3C3,H1-2) H1-2 chr6 26053433 chr6 26056079 DELETION TRUTH_659_cIW_22 TRUTH truth 35.0 0 0 10 2081 hg19 6 26053661.0 6 26056307.0 0 10 UNEVALUABLE UNEVALUABLE
659_cIW LRGUK SLC35B4 chr7 134163468 chr7 134316300 DELETION TRUTH_659_cIW_23 TRUTH truth 75.0 0 0 697 461 hg19 7 133848220.0 7 134001052.0 0 461 EVALUABLE BAM_REFUTED
659_cIW RAB11FIP4 RARA chr17 31412127 chr17 40343478 DUPLICATION TRUTH_659_cIW_24 TRUTH truth 50.0 0 0 0 12352 hg19 17 29739145.0 17 38499730.0 0 0 UNEVALUABLE UNEVALUABLE
659_cIW RARA intergenic(COL1A1,TMEM92) chr17 40341749 chr17 50207609 DUPLICATION TRUTH_659_cIW_25 TRUTH truth 311.0 0 0 15609 1 hg19 17 38498001.0 17 48284970.0 0 1 UNEVALUABLE UNEVALUABLE
659_cIW TNS4 UTP18 chr17 40481391 chr17 51285352 DELETION TRUTH_659_cIW_26 TRUTH truth 181.0 0 0 109 742 hg19 17 38637643.0 17 49362713.0 0 109 EVALUABLE BAM_REFUTED
659_cIW ABCC3 intergenic(CA10,KIF2B) chr17 50675643 chr17 52245074 INVERSION TRUTH_659_cIW_27 TRUTH truth 99.0 0 0 2471 0 hg19 17 48753004.0 17 50322434.0 0 0 UNEVALUABLE UNEVALUABLE
659_cJ6 STRN intergenic(CLDN24,CDKN2AIP) chr2 36893915 chr4 183324034 BND CALL_659_cJ6_0 TP call 0.9852 0 0 741 3 hg19 2 37121058.0 4 184245187.0 0 3 UNEVALUABLE UNEVALUABLE
659_cJ6 ARHGEF33 FGFR2 chr2 38926756 chr10 121483431 BND CALL_659_cJ6_1 TP_DUP call 0.9379 0 0 1 5911 hg19 2 39153897.0 10 123242945.0 0 1 UNEVALUABLE UNEVALUABLE
659_cJ6 intergenic(HLA-A,POLR1H) HLA-C chr6 29957485 chr6 31270415 BND CALL_659_cJ6_2 FP call 0.0001 0 0 663 6714 hg19 6 29925262.0 6 31238192.0 0 663 EVALUABLE BAM_REFUTED
659_cJ6 STRN intergenic(CLDN24,CDKN2AIP) chr2 36893914 chr4 183324033 TRANSLOCATION TRUTH_659_cJ6_3 TRUTH truth 32.0 0 0 741 3 hg19 2 37121057.0 4 184245186.0 0 3 UNEVALUABLE UNEVALUABLE
659_cJ6 ARHGEF33 FGFR2 chr2 38926461 chr10 121483529 TRANSLOCATION TRUTH_659_cJ6_4 TRUTH truth 201.0 0 0 1 5707 hg19 2 39153602.0 10 123243043.0 0 1 UNEVALUABLE UNEVALUABLE
659_cKj ANKRD36B ANKRD36 chr2 97589625 chr2 97113908 BND CALL_659_cKj_0 FP call 0.0 2 0 1178 1953 hg19 2 98206088.0 2 97779645.0 2 1178 EVALUABLE BAM_AMBIGUOUS
659_cKj intergenic(LRP1B,KYNU) GLRA2 chr2 142700402 chrX 14607210 BND CALL_659_cKj_1 FP call 0.0 0 0 0 316 hg19 2 143457971.0 X 14625332.0 0 0 UNEVALUABLE UNEVALUABLE
659_cKj intergenic(C4orf33,PCDH10) ZEB2 chr4 131559824 chr2 144389478 BND CALL_659_cKj_2 FP call 0.0 0 0 0 2838 hg19 4 132480979.0 2 145147045.0 0 0 UNEVALUABLE UNEVALUABLE
659_cKj ARSB intergenic(ECI2,CDYL) chr5 78985217 chr6 4600043 BND CALL_659_cKj_3 TP call 0.9995 0 0 1387 5 hg19 5 78281040.0 6 4600277.0 0 5 UNEVALUABLE UNEVALUABLE
659_cKj intergenic(ZNF608,GRAMD2B) NRG1 chr5 125160627 chr8 32743088 BND CALL_659_cKj_4 FP call 0.0 0 0 0 1607 hg19 5 124496320.0 8 32600606.0 0 0 UNEVALUABLE UNEVALUABLE
659_cKj intergenic(RPP40,PPP1R3G) ARSB chr6 5065894 chr5 78984958 BND CALL_659_cKj_5 TP_DUP call 0.9854 0 0 211 1388 hg19 6 5066128.0 5 78280781.0 0 211 EVALUABLE BAM_REFUTED
659_cKj TMEM170B TDRD6 chr6 11552624 chr6 46693650 DUP CALL_659_cKj_6 TP call 0.7991 0 0 0 2903 hg19 6 11552857.0 6 46661387.0 0 0 UNEVALUABLE UNEVALUABLE
659_cKj JARID2 SCUBE3 chr6 15509083 chr6 35242708 DEL CALL_659_cKj_7 TP call 0.0072 0 0 1229 1733 hg19 6 15509314.0 6 35210485.0 0 1229 EVALUABLE BAM_REFUTED
659_cKj intergenic(HLA-DRA,HLA-DRB5) HLA-DRB1 chr6 32473354 chr6 32589825 DUP CALL_659_cKj_8 FP call 0.0 1 0 259 1351 hg19 6 32441131.0 6 32557602.0 1 259 EVALUABLE BAM_AMBIGUOUS
659_cKj RNF8 ANKRD66 chr6 37390748 chr6 46747103 DUP CALL_659_cKj_9 TP call 0.6694 0 0 340 354 hg19 6 37358524.0 6 46714840.0 0 340 EVALUABLE BAM_REFUTED
659_cKj intergenic(GRIK2,HACE1) TNFAIP3 chr6 104316616 chr6 137867221 DEL CALL_659_cKj_10 FP call 0.9857 0 0 0 0 hg19 6 104764491.0 6 138188358.0 0 0 UNEVALUABLE UNEVALUABLE
659_cKj NHSL1 REPS1 chr6 138556925 chr6 138941335 BND CALL_659_cKj_11 FP call 0.4289 0 0 0 600 hg19 6 138878062.0 6 139262472.0 0 0 UNEVALUABLE UNEVALUABLE
659_cKj HECA VTA1 chr6 139166685 chr6 142172739 BND CALL_659_cKj_12 TP call 0.8951 0 0 3006 2 hg19 6 139487822.0 6 142493876.0 0 2 UNEVALUABLE UNEVALUABLE
659_cKj intergenic(TTLL2,AFDN) DHRS1 chr6 167534207 chr14 24292747 BND CALL_659_cKj_13 FP call 0.7386 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_cKj intergenic(FRMD1,DACT2) ADCY4 chr6 168101851 chr14 24319389 BND CALL_659_cKj_14 TP call 0.7897 0 0 0 1810 hg19 6 168502531.0 14 24788595.0 0 0 UNEVALUABLE UNEVALUABLE
659_cKj DOCK5 intergenic(ADAM7,NEFM) chr8 25399951 chr8 24544849 BND CALL_659_cKj_15 TP_DUP call 0.989 0 0 359 2 hg19 8 25257467.0 8 24402362.0 0 2 UNEVALUABLE UNEVALUABLE
659_cKj intergenic(TRPS1,EIF3H) ZNF703 chr8 116049366 chr8 37699789 BND CALL_659_cKj_16 FP call 0.2244 0 0 0 3 hg19 8 117061591.0 8 37557307.0 0 0 UNEVALUABLE UNEVALUABLE
659_cKj AHNAK TAF6L chr11 62533935 chr11 62783323 DUP CALL_659_cKj_17 TP call 0.9981 0 0 2323 514 hg19 11 62301407.0 11 62550795.0 0 514 EVALUABLE BAM_REFUTED
659_cKj intergenic(KDM2A,GRK2) SLC45A4 chr11 67260527 chr8 141218091 BND CALL_659_cKj_18 FP call 0.0001 0 0 22 3773 hg19 11 67027998.0 8 142228190.0 0 22 EVALUABLE BAM_REFUTED
659_cKj CCND1 intergenic(MIS18BP1,RPL10L) chr11 69653805 chr14 45963631 BND CALL_659_cKj_19 FP call 0.0865 0 0 0 0 hg19 11 69468573.0 14 46432834.0 0 0 UNEVALUABLE UNEVALUABLE
659_cKj FANCM NAA30 chr14 45159299 chr14 57392455 BND CALL_659_cKj_20 FP call 0.48 0 0 445 12 hg19 14 45628502.0 14 57859173.0 0 12 UNEVALUABLE UNEVALUABLE
659_cKj MAP3K9 intergenic(GPR31,UNC93A) chr14 70740056 chr6 167217675 BND CALL_659_cKj_21 FP call 0.0154 0 0 1086 1 hg19 14 71206773.0 6 167631163.0 0 1 UNEVALUABLE UNEVALUABLE
659_cKj NATD1 DTNBP1 chr17 21241167 chr6 15523199 BND CALL_659_cKj_22 TP_DUP call 0.9909 0 0 0 1854 hg19 17 21144480.0 6 15523430.0 0 0 UNEVALUABLE UNEVALUABLE
659_cKj intergenic(QPCTL,FBXO46) SMO chr19 45710516 chr7 129205779 BND CALL_659_cKj_23 FP call 0.0 0 0 5 5731 hg19 19 46213774.0 7 128845620.0 0 5 UNEVALUABLE UNEVALUABLE
659_cKj intergenic(DHX35,MAFB) GDF5 chr20 39189770 chr20 35437662 BND CALL_659_cKj_24 TP_DUP call 0.987 0 0 0 1735 hg19 20 37818413.0 20 34025442.0 0 0 UNEVALUABLE UNEVALUABLE
659_cKj GCNA NEMF chrX 71603691 chr14 49803448 BND CALL_659_cKj_25 FP call 0.0 0 0 8359 242 hg19 X 70823541.0 14 50270166.0 0 242 EVALUABLE BAM_REFUTED
659_cKj HECA VTA1 chr6 139166683 chr6 142172737 INVERSION TRUTH_659_cKj_26 TRUTH truth 43.0 0 0 3006 2 hg19 6 139487820.0 6 142493874.0 0 2 UNEVALUABLE UNEVALUABLE
659_cKj AHNAK TMEM223 chr11 62533934 chr11 62783322 DUPLICATION TRUTH_659_cKj_27 TRUTH truth 85.0 0 0 2324 515 hg19 11 62301406.0 11 62550794.0 0 515 EVALUABLE BAM_REFUTED
659_cKj ARSB intergenic(ECI2,CDYL) chr5 78985216 chr6 4600041 TRANSLOCATION TRUTH_659_cKj_28 TRUTH truth 126.0 0 0 1387 5 hg19 5 78281039.0 6 4600275.0 0 5 UNEVALUABLE UNEVALUABLE
659_cKj ARSB intergenic(RPP40,PPP1R3G) chr5 78984957 chr6 5065893 TRANSLOCATION TRUTH_659_cKj_29 TRUTH truth 123.0 0 0 1388 211 hg19 5 78280780.0 6 5066127.0 0 211 EVALUABLE BAM_REFUTED
659_cKj intergenic(ADAM7,NEFM) DOCK5 chr8 24544843 chr8 25399953 INVERSION TRUTH_659_cKj_30 TRUTH truth 51.0 0 0 2 359 hg19 8 24402356.0 8 25257469.0 0 2 UNEVALUABLE UNEVALUABLE
659_cKj JARID2 SCUBE3 chr6 15509082 chr6 35242707 DELETION TRUTH_659_cKj_31 TRUTH truth 62.0 0 0 1229 1732 hg19 6 15509313.0 6 35210484.0 0 1229 EVALUABLE BAM_REFUTED
659_cKj DTNBP1 NATD1 chr6 15523198 chr17 21241166 TRANSLOCATION TRUTH_659_cKj_32 TRUTH truth 119.0 0 0 1854 0 hg19 6 15523429.0 17 21144479.0 0 0 UNEVALUABLE UNEVALUABLE
659_cKj TMEM170B TDRD6 chr6 11552623 chr6 46693649 DUPLICATION TRUTH_659_cKj_33 TRUTH truth 76.0 0 0 0 2904 hg19 6 11552856.0 6 46661386.0 0 0 UNEVALUABLE UNEVALUABLE
659_cKj GDF5 intergenic(DHX35,MAFB) chr20 35437658 chr20 39189770 INVERSION TRUTH_659_cKj_34 TRUTH truth 54.0 0 0 1735 0 hg19 20 34025438.0 20 37818413.0 0 0 UNEVALUABLE UNEVALUABLE
659_cKj intergenic(FRMD1,DACT2) ADCY4 chr6 168101850 chr14 24319388 TRANSLOCATION TRUTH_659_cKj_35 TRUTH truth 53.0 0 0 0 1815 hg19 6 168502530.0 14 24788594.0 0 0 UNEVALUABLE UNEVALUABLE
659_cKj RNF8 ANKRD66 chr6 37390747 chr6 46747102 DUPLICATION TRUTH_659_cKj_36 TRUTH truth 30.0 0 0 340 354 hg19 6 37358523.0 6 46714839.0 0 340 EVALUABLE BAM_REFUTED
659_cKj SLC7A7 EFS chr14 22820461 chr14 23360578 DUPLICATION TRUTH_659_cKj_37 TRUTH truth 83.0 0 0 16 3384 hg19 14 23289670.0 14 23829787.0 0 16 UNEVALUABLE UNEVALUABLE
659_cRa PHC2 RSPO3 chr1 33402412 chr6 127145225 BND CALL_659_cRa_0 FP call 0.0 0 0 1 0 hg19 1 33868013.0 6 127466370.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa MACF1 OR10J5 chr1 39363908 chr1 159535557 DUP CALL_659_cRa_1 FP call 0.0006 0 0 6 2061 hg19 1 39829580.0 1 159505347.0 0 6 UNEVALUABLE UNEVALUABLE
659_cRa intergenic(SERBP1,GADD45A) CCND1 chr1 67578373 chr11 69652804 BND CALL_659_cRa_2 FP call 0.0001 0 0 0 0 hg19 1 68044056.0 11 69467572.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa HHIPL2 IGF1 chr1 222538127 chr12 102399082 BND CALL_659_cRa_3 FP call 0.0 0 0 209 6 hg19 1 222711469.0 12 102792860.0 0 6 UNEVALUABLE UNEVALUABLE
659_cRa intergenic(CYRIA,RAD51AP2) ETV1 chr2 17088997 chr7 13920469 BND CALL_659_cRa_4 FP call 0.0 0 0 5 2 hg19 2 17270264.0 7 13960094.0 0 2 UNEVALUABLE UNEVALUABLE
659_cRa SRD5A2 ETV1 chr2 31554925 chr7 13920469 BND CALL_659_cRa_5 FP call 0.0 0 0 8 2 hg19 2 31779995.0 7 13960094.0 0 2 UNEVALUABLE UNEVALUABLE
659_cRa intergenic(HS6ST1,RAB6C) PTEN chr2 129343008 chr10 87971587 BND CALL_659_cRa_6 FP call 0.0001 0 0 2 0 hg19 2 130100581.0 10 89731344.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa intergenic(SELENOK,CACNA2D3) ETV1 chr3 53998591 chr7 13920469 BND CALL_659_cRa_7 FP call 0.0 0 0 3 2 hg19 3 54032618.0 7 13960094.0 0 2 UNEVALUABLE UNEVALUABLE
659_cRa ROBO2 AR chr3 76893331 chrX 67695843 BND CALL_659_cRa_8 FP call 0.0 0 0 0 7622 hg19 3 76942482.0 X 66915685.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa DZIP3 ETV1 chr3 108631046 chr7 13920469 BND CALL_659_cRa_9 FP call 0.0 0 0 5 2 hg19 3 108349893.0 7 13960094.0 0 2 UNEVALUABLE UNEVALUABLE
659_cRa GAP43 FAS chr3 115642500 chr10 89019512 BND CALL_659_cRa_10 FP call 0.0 0 0 0 2 hg19 3 115361347.0 10 90779269.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa intergenic(LSAMP,IGSF11) PTEN chr3 117679735 chr10 87971587 BND CALL_659_cRa_11 FP call 0.0 0 0 6 0 hg19 3 117398582.0 10 89731344.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa IQCJ ETV1 chr3 159092731 chr7 13920469 BND CALL_659_cRa_12 FP call 0.0 0 0 8 2 hg19 3 158810520.0 7 13960094.0 0 2 UNEVALUABLE UNEVALUABLE
659_cRa intergenic(PEX5L,TTC14) AR chr3 180094770 chrX 67695739 BND CALL_659_cRa_13 FP call 0.0 0 0 6 8306 hg19 3 179812558.0 X 66915581.0 0 6 UNEVALUABLE UNEVALUABLE
659_cRa ETV5 CNBD1 chr3 186069521 chr8 86936743 BND CALL_659_cRa_14 FP call 0.0 0 0 6241 6 hg19 3 185787310.0 8 87948971.0 0 6 UNEVALUABLE UNEVALUABLE
659_cRa intergenic(ADGRL3,TECRL) NTRK3 chr4 63131419 chr15 87987526 BND CALL_659_cRa_15 FP call 0.0 0 0 0 0 hg19 4 63997137.0 15 88530757.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa intergenic(BANK1,SLC39A8) NTRK3 chr4 102185725 chr15 88010744 BND CALL_659_cRa_16 FP call 0.0 0 0 0 0 hg19 4 103106882.0 15 88553975.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa DMGDH NTRK3 chr5 79178617 chr15 87987526 BND CALL_659_cRa_17 FP call 0.0 0 0 7 0 hg19 5 78474440.0 15 88530757.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa intergenic(CCDC192,SLC12A2) CIC chr5 128021719 chr19 42294019 BND CALL_659_cRa_18 FP call 0.0 0 0 0 10103 hg19 5 127357411.0 19 42798171.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa PDE6A MFF chr5 149932391 chr2 227332586 BND CALL_659_cRa_19 FP call 0.0418 0 0 974 468 hg19 5 149311954.0 2 228197302.0 0 468 EVALUABLE BAM_REFUTED
659_cRa UBLCP1 AR chr5 159273869 chrX 67695739 BND CALL_659_cRa_20 FP call 0.0 0 0 7 8306 hg19 5 158700877.0 X 66915581.0 0 7 UNEVALUABLE UNEVALUABLE
659_cRa intergenic(MAT2B,TENM2) PTEN chr5 164498933 chr10 87971587 BND CALL_659_cRa_21 FP call 0.0039 0 0 0 0 hg19 5 163925939.0 10 89731344.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa TENM2 NTRK3 chr5 167550750 chr15 87941497 BND CALL_659_cRa_22 FP call 0.0 0 0 10 20 hg19 5 166977755.0 15 88484728.0 0 10 UNEVALUABLE UNEVALUABLE
659_cRa CDKAL1 SPRED1 chr6 20755193 chr15 38357119 BND CALL_659_cRa_23 FP call 0.0 0 0 0 0 hg19 6 20755424.0 15 38649320.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa GPLD1 MAP2K2 chr6 24440955 chr19 4097295 BND CALL_659_cRa_24 FP call 0.0 0 0 2 855 hg19 6 24441183.0 19 4097293.0 0 2 UNEVALUABLE UNEVALUABLE
659_cRa HLA-C intergenic(HLA-C,HLA-B) chr6 31268857 chr6 31353782 DEL CALL_659_cRa_25 FP call 0.0026 0 0 5870 4185 hg19 6 31236634.0 6 31321559.0 0 4185 EVALUABLE BAM_REFUTED
659_cRa PI16 PTEN chr6 36960326 chr10 87971587 BND CALL_659_cRa_26 FP call 0.0 0 0 17 0 hg19 6 36928102.0 10 89731344.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa KHDRBS2 ETV1 chr6 62255655 chr7 13920469 BND CALL_659_cRa_27 FP call 0.0 0 0 8 2 hg19 6 62965560.0 7 13960094.0 0 2 UNEVALUABLE UNEVALUABLE
659_cRa intergenic(ERV3-1,ZNF92) NTRK3 chr7 65246695 chr15 87987526 BND CALL_659_cRa_28 FP call 0.0 0 0 2 0 hg19 7 64707059.0 15 88530757.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa CALN1 ETV1 chr7 72268827 chr7 13920469 BND CALL_659_cRa_29 FP call 0.0 0 0 4 2 hg19 7 71733812.0 7 13960094.0 0 2 UNEVALUABLE UNEVALUABLE
659_cRa TYW1B NTRK3 chr7 72717645 chr15 87941497 BND CALL_659_cRa_30 FP call 0.0 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_cRa MKLN1 BCL2 chr7 131369001 chr18 63128464 BND CALL_659_cRa_31 FP call 0.0001 0 0 0 8133 hg19 7 131053760.0 18 60795697.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa FGFR1 EXTL2 chr8 38431952 chr1 100884898 BND CALL_659_cRa_32 FP call 0.0 0 0 2 0 hg19 8 38289470.0 1 101350454.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa intergenic(PENK,BPNT2) ETV1 chr8 56717572 chr7 13920469 BND CALL_659_cRa_33 FP call 0.0 0 0 5 2 hg19 8 57630131.0 7 13960094.0 0 2 UNEVALUABLE UNEVALUABLE
659_cRa intergenic(PRSS3,UBE2R2) ETV1 chr9 33807036 chr7 13920469 BND CALL_659_cRa_34 FP call 0.0 0 0 0 2 hg19 9 33807034.0 7 13960094.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa intergenic(TMEM38B,ZNF462) NCOA3 chr9 105845225 chr20 47654917 BND CALL_659_cRa_35 FP call 0.0 0 0 13 0 hg19 9 108607506.0 20 46283661.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa KIF5B intergenic(FANCL,BCL11A) chr10 32021591 chr2 60252248 BND CALL_659_cRa_36 FP call 0.0 0 0 479 0 hg19 10 32310519.0 2 60479383.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa LRRC18 NTRK3 chr10 48916909 chr15 87941497 BND CALL_659_cRa_37 FP call 0.0 0 0 1 20 hg19 10 50124954.0 15 88484728.0 0 1 UNEVALUABLE UNEVALUABLE
659_cRa ANK3 NTRK3 chr10 60358100 chr15 87987526 BND CALL_659_cRa_38 FP call 0.0 0 0 0 0 hg19 10 62117858.0 15 88530757.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa NRG3 AR chr10 82548560 chrX 67695739 BND CALL_659_cRa_39 FP call 0.0 0 0 7 8306 hg19 10 84308316.0 X 66915581.0 0 7 UNEVALUABLE UNEVALUABLE
659_cRa PTEN EPHA5 chr10 87971587 chr4 65503945 BND CALL_659_cRa_40 FP call 0.0001 0 0 0 4 hg19 10 89731344.0 4 66369663.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa ENSG00000288710 TUBA1C chr12 49019405 chr12 49269719 DEL CALL_659_cRa_41 FP call 0.0 0 0 1204 3700 hg19 12 49413188.0 12 49663502.0 0 1204 EVALUABLE BAM_REFUTED
659_cRa TPCN1 PGPEP1L chr12 113293033 chr15 98985515 BND CALL_659_cRa_42 FP call 0.0003 0 0 1062 2 hg19 12 113730838.0 15 99528744.0 0 2 UNEVALUABLE UNEVALUABLE
659_cRa intergenic(TMEM132D,FZD10) MUC17 chr12 129917044 chr7 101035347 BND CALL_659_cRa_43 FP call 0.0 0 0 5 7910 hg19 12 130401589.0 7 100678628.0 0 5 UNEVALUABLE UNEVALUABLE
659_cRa intergenic(PRR20E,PCDH17) NTRK3 chr13 57334851 chr15 87941497 BND CALL_659_cRa_44 FP call 0.0001 0 0 2 20 hg19 13 57908985.0 15 88484728.0 0 2 UNEVALUABLE UNEVALUABLE
659_cRa intergenic(LMO7,KCTD12) PPARG chr13 76517003 chr3 12302361 BND CALL_659_cRa_45 FP call 0.0 0 0 0 0 hg19 13 77091139.0 3 12343860.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa intergenic(NDFIP2,SPRY2) AR chr13 79784916 chrX 67695739 BND CALL_659_cRa_46 FP call 0.0 0 0 0 8306 hg19 13 80359051.0 X 66915581.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa GABRB3 ETV1 chr15 26741046 chr7 13920469 BND CALL_659_cRa_47 FP call 0.0 0 0 0 2 hg19 15 26986193.0 7 13960094.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa FAM98B EGLN3 chr15 38474271 chr14 34254953 BND CALL_659_cRa_48 FP call 0.0075 0 0 329 0 hg19 15 38766472.0 14 34724159.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa MAP2K1 AR chr15 66421126 chrX 67695739 BND CALL_659_cRa_49 FP call 0.0 0 0 1 8306 hg19 15 66713464.0 X 66915581.0 0 1 UNEVALUABLE UNEVALUABLE
659_cRa SCAPER NTRK3 chr15 76615492 chr15 87941496 DUP CALL_659_cRa_50 FP call 0.0 0 0 6 20 hg19 15 76907833.0 15 88484727.0 0 6 UNEVALUABLE UNEVALUABLE
659_cRa NTRK3 IPO9 chr15 87954007 chr1 201877512 BND CALL_659_cRa_51 FP call 0.0 0 0 13 6 hg19 15 88497238.0 1 201846640.0 0 6 UNEVALUABLE UNEVALUABLE
659_cRa NTRK3 intergenic(RGMA,MCTP2) chr15 87987525 chr15 93329961 DUP CALL_659_cRa_52 FP call 0.0003 0 0 0 3 hg19 15 88530756.0 15 93873190.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa NTRK3 ZPLD1 chr15 87987526 chr3 102426112 BND CALL_659_cRa_53 FP call 0.0 0 0 0 28 hg19 15 88530757.0 3 102144956.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa NTRK3 intergenic(GBA3,PPARGC1A) chr15 87987526 chr4 23137072 BND CALL_659_cRa_54 FP call 0.0002 0 0 0 10 hg19 15 88530757.0 4 23138695.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa NTRK3 VPS13B chr15 87987526 chr8 99807704 BND CALL_659_cRa_55 FP call 0.0 0 0 0 0 hg19 15 88530757.0 8 100819932.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa CMIP ATRX chr16 81673052 chrX 77508506 BND CALL_659_cRa_56 FP call 0.0 0 0 3 2653 hg19 16 81706657.0 X 76763984.0 0 3 UNEVALUABLE UNEVALUABLE
659_cRa TNFAIP1 STUM chr17 28340408 chr1 226557097 BND CALL_659_cRa_57 FP call 0.0015 0 0 992 0 hg19 17 26667434.0 1 226744798.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa SUZ12 HOXC13 chr17 32000572 chr12 53941482 BND CALL_659_cRa_58 FP call 0.0 0 0 0 0 hg19 17 30327591.0 12 54335266.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa ASXL3 ABCC8 chr18 33646290 chr11 17419074 BND CALL_659_cRa_59 FP call 0.0004 0 0 522 0 hg19 18 31226254.0 11 17440621.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa intergenic(CELF4,PIK3C3) NTRK3 chr18 38022884 chr15 87941497 BND CALL_659_cRa_60 FP call 0.0 0 0 0 20 hg19 18 35602848.0 15 88484728.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa SMAD2 intergenic(FAM98A,CRIM1) chr18 47879496 chr2 35731417 BND CALL_659_cRa_61 FP call 0.012 0 0 2 0 hg19 18 45405867.0 2 35956483.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa ZNF407 NTRK3 chr18 74915362 chr15 87987526 BND CALL_659_cRa_62 FP call 0.0 0 0 2 0 hg19 18 72627318.0 15 88530757.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa S1PR2 intergenic(SCFD1,COCH) chr19 10221805 chr14 30782141 BND CALL_659_cRa_63 FP call 0.0 0 0 2 0 hg19 19 10332481.0 14 31251347.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa ZNF565 AR chr19 36211486 chrX 67695739 BND CALL_659_cRa_64 FP call 0.0001 0 0 11 8306 hg19 19 36702388.0 X 66915581.0 0 11 UNEVALUABLE UNEVALUABLE
659_cRa ERCC2 EZR chr19 45358905 chr6 158786099 BND CALL_659_cRa_65 FP call 0.0 0 0 0 285 hg19 19 45862163.0 6 159207131.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa TNRC6B PPARG chr22 40097778 chr3 12298390 BND CALL_659_cRa_66 FP call 0.0 0 0 11 3 hg19 22 40493782.0 3 12339889.0 0 3 UNEVALUABLE UNEVALUABLE
659_cRa AKAP17A IDS chrX 1595387 chrX 149489628 BND CALL_659_cRa_67 FP call 0.0 0 0 1180 8 hg19 X 1714280.0 X 148571159.0 0 8 UNEVALUABLE UNEVALUABLE
659_cRa intergenic(PPP1R2C,MAOA) PTEN chrX 43353452 chr10 87971587 BND CALL_659_cRa_68 FP call 0.0 0 0 3 0 hg19 X 43212701.0 10 89731344.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa intergenic(RAB40A,TCEAL4) FLT1 chrX 103523419 chr13 28301254 BND CALL_659_cRa_69 FP call 0.0 0 0 1 0 hg19 X 102778347.0 13 28875391.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa GPC3 NTRK3 chrX 133803979 chr15 87941497 BND CALL_659_cRa_70 FP call 0.0 0 0 0 20 hg19 X 132938006.0 15 88484728.0 0 0 UNEVALUABLE UNEVALUABLE
659_cRa intergenic(.,.) HLA-DRB5 chr6_GL000256v2_alt 3900169 chr6 32519423 BND CALL_659_cRa_71 FP call 0.0 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_cRa intergenic(.,.) HLA-DRB1 chr6_GL000256v2_alt 3900247 chr6 32581677 BND CALL_659_cRa_72 FP call 0.001 406 0 813 813 hg19 6 32549575.0 6 32549454.0 406 813 EVALUABLE BAM_CONFIRMED
659_cRa intergenic(.,.) HLA-DQB1 HLA-DQB1*06:01:01 2041 chr6 32664946 BND CALL_659_cRa_73 FP call 0.007 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_cRa TAPBPL intergenic(ATP23,LRIG3) chr12 6460863 chr12 58621610 INVERSION TRUTH_659_cRa_74 TRUTH truth 11.0 0 0 2400 1 hg19 12 6570029.0 12 59015392.0 0 1 UNEVALUABLE UNEVALUABLE
659_cRa SRGAP1 XPOT chr12 64023223 chr12 64431647 DELETION TRUTH_659_cRa_75 TRUTH truth 10.0 0 0 1 1021 hg19 12 64417003.0 12 64825427.0 0 1 UNEVALUABLE UNEVALUABLE
659_cpY SLC30A2 intergenic(CSF1,AHCYL1) chr1 26039833 chr1 109974630 BND CALL_659_cpY_0 TP call 0.4061 0 0 692 0 hg19 1.0 26366324.0 1 110517252.0 0 0 UNEVALUABLE UNEVALUABLE
659_cpY ACTG2 ALK chr2 73898045 chr2 29227420 BND CALL_659_cpY_1 TP_DUP call 0.5494 0 0 4 8700 hg19 2.0 74125172.0 2 29450286.0 0 4 UNEVALUABLE UNEVALUABLE
659_cpY PPARG intergenic(TBC1D23,NIT2) chr3 12330450 chr3 100327977 BND CALL_659_cpY_2 FP call 0.0 0 0 0 4 hg19 3.0 12371949.0 3 100046821.0 0 0 UNEVALUABLE UNEVALUABLE
659_cpY PPARG intergenic(WASH6P,.) chr3 12346277 chrX 156030352 BND CALL_659_cpY_3 FP call 0.0 0 0 0 6 hg19 3.0 12387776.0 X 155260017.0 0 0 UNEVALUABLE UNEVALUABLE
659_cpY intergenic(HLA-G,HLA-A) HLA-A chr6 29890498 chr6 29945151 DEL CALL_659_cpY_4 FP call 0.0022 1 0 2478 8660 hg19 6.0 29858275.0 6 29912928.0 1 2478 EVALUABLE BAM_AMBIGUOUS
659_cpY KAT6A CTNNA2 chr8 41931062 chr2 80054941 BND CALL_659_cpY_5 FP call 0.0 0 0 1 0 hg19 8.0 41788580.0 2 80282067.0 0 0 UNEVALUABLE UNEVALUABLE
659_cpY NTRK2 intergenic(IMPG1,HTR1B) chr9 84882577 chr6 77122159 BND CALL_659_cpY_6 FP call 0.0 0 0 4 0 hg19 9.0 87497492.0 6 77831876.0 0 0 UNEVALUABLE UNEVALUABLE
659_cpY CHEK1 intergenic(PRR16,FTMT) chr11 125657113 chr5 121337732 BND CALL_659_cpY_7 FP call 0.0 0 0 2 2 hg19 11.0 125527008.0 5 120673427.0 0 2 UNEVALUABLE UNEVALUABLE
659_cpY AP4E1 ONECUT1 chr15 50997654 chr15 52775332 BND CALL_659_cpY_8 FP call 0.0001 0 0 1309 14 hg19 15.0 51289851.0 15 53067529.0 0 14 UNEVALUABLE UNEVALUABLE
659_cpY intergenic(RIPOR1,CTCF) DDR2 chr16 67556792 chr1 162785767 BND CALL_659_cpY_9 FP call 0.0 0 0 9 0 hg19 16.0 67590695.0 1 162755557.0 0 0 UNEVALUABLE UNEVALUABLE
659_cpY ZNF567 ARHGAP33 chr19 36692705 chr19 35780270 BND CALL_659_cpY_10 TP_DUP call 0.8652 0 0 0 1603 hg19 19.0 37183607.0 19 36271172.0 0 0 UNEVALUABLE UNEVALUABLE
659_cpY intergenic(.,.) HLA-DPB1 chr6_GL000251v2_alt 4498483 chr6 33086747 BND CALL_659_cpY_11 FP call 0.0007 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_cpY SLC30A2 intergenic(CSF1,AHCYL1) chr1 26039832 chr1 109974629 INVERSION TRUTH_659_cpY_12 TRUTH truth 138.0 0 0 693 0 hg19 1.0 26366323.0 1 110517251.0 0 0 UNEVALUABLE UNEVALUABLE
659_cpY ALK ACTG2 chr2 29227419 chr2 73898044 INVERSION TRUTH_659_cpY_13 TRUTH truth 418.0 0 0 8712 4 hg19 2.0 29450285.0 2 74125171.0 0 4 UNEVALUABLE UNEVALUABLE
659_cpY ARHGAP33 ZNF567 chr19 35780267 chr19 36692706 INVERSION TRUTH_659_cpY_14 TRUTH truth 38.0 0 0 1600 0 hg19 19.0 36271169.0 19 37183608.0 0 0 UNEVALUABLE UNEVALUABLE
659_cuO intergenic(ERV3-1,ZNF92) MDM4 chr7 65040619 chr1 204552725 BND CALL_659_cuO_0 FP call 0.0001 0 0 8 28 hg19 7 64500997.0 1 204521853.0 0 8 UNEVALUABLE UNEVALUABLE
659_cuO NFIB MYB chr9 14116147 chr6 135213830 BND CALL_659_cuO_1 TP_DUP call 0.0001 0 0 1068 6515 hg19 9 14116146.0 6 135534968.0 0 1068 EVALUABLE BAM_REFUTED
659_cuO intergenic(BRINP1,CDK5RAP2) PRPS1L1 chr9 119992659 chr7 18027614 BND CALL_659_cuO_2 FP call 0.0023 0 0 0 2664 hg19 9 122754937.0 7 18067237.0 0 0 UNEVALUABLE UNEVALUABLE
659_cuO MYB NFIB chr6 135213828 chr9 14116146 TRANSLOCATION TRUTH_659_cuO_3 TRUTH truth 427.0 0 0 6519 1068 hg19 6 135534966.0 9 14116145.0 0 1068 EVALUABLE BAM_REFUTED
659_cuv COL16A1 FGFR2 chr1 31660762 chr10 121479265 BND CALL_659_cuv_0 TP call 0.2588 0 0 1347 7360 hg19 1 32126363.0 10.0 123238779.0 0 1347 EVALUABLE BAM_REFUTED
659_cuv MAGI1 TBP chr3 65439947 chr6 170562017 BND CALL_659_cuv_1 FP call 0.0 0 0 1205 2637 hg19 3 65425622.0 6.0 170871105.0 0 1205 EVALUABLE BAM_REFUTED
659_cuv TNFAIP3 intergenic(ZIC1,AGTR1) chr6 137883036 chr3 148061919 BND CALL_659_cuv_2 FP call 0.0 0 0 0 23 hg19 6 138204173.0 3.0 147779706.0 0 0 UNEVALUABLE UNEVALUABLE
659_cuv OR1S1 OR1S2 chr11 58215721 chr11 58203384 BND CALL_659_cuv_3 FP call 0.0 0 0 1844 2905 hg19 11 57983193.0 11.0 57970856.0 0 1844 EVALUABLE BAM_REFUTED
659_cuv MUC16 intergenic(.,.) chr19 8901808 chrUn_JTFH01000017v1_decoy 5707 BND CALL_659_cuv_4 FP call 0.0 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_cuv intergenic(PDE4A,KEAP1) KEAP1 chr19 10483234 chr19 10492047 DEL CALL_659_cuv_5 TP call 0.5559 0 0 9 6035 hg19 19 10593910.0 19.0 10602723.0 0 9 UNEVALUABLE UNEVALUABLE
659_cuv intergenic(RPS6KA3,CNKSR2) TBP chrX 21367267 chr6 170562017 BND CALL_659_cuv_6 FP call 0.0005 0 0 3 2637 hg19 X 21385385.0 6.0 170871105.0 0 3 UNEVALUABLE UNEVALUABLE
659_cuv intergenic(.,.) MUC3A chrUn_JTFH01000054v1_decoy 3299 chr7 100952769 BND CALL_659_cuv_7 FP call 0.0138 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_cuv COL16A1 FGFR2 chr1 31660761 chr10 121479264 TRANSLOCATION TRUTH_659_cuv_8 TRUTH truth 122.0 0 0 1346 7369 hg19 1 32126362.0 10.0 123238778.0 0 1346 EVALUABLE BAM_REFUTED
659_cuv intergenic(PDE4A,KEAP1) KEAP1 chr19 10483233 chr19 10492046 DELETION TRUTH_659_cuv_9 TRUTH truth 85.0 0 0 9 6037 hg19 19 10593909.0 19.0 10602722.0 0 9 UNEVALUABLE UNEVALUABLE
659_cvt intergenic(SNX16,RALYL) OR4A15 chr8 83663070 chr11 55368263 BND CALL_659_cvt_0 FP call 0.0004 0 0 0 1752 hg19 8 84575305.0 11 55135739.0 0 0 UNEVALUABLE UNEVALUABLE
659_cvt ATP1B2 TP53 chr17 7657162 chr17 7676215 BND CALL_659_cvt_1 TP call 0.9951 0 0 18 4650 hg19 17 7560480.0 17 7579533.0 0 18 UNEVALUABLE UNEVALUABLE
659_cvt ENSG00000255730 intergenic(ZNF543,ZNF304) chr19 41353780 chr19 57331524 DEL CALL_659_cvt_2 FP call 0.2535 0 0 7 6 hg19 19 41859685.0 19 57842892.0 0 6 UNEVALUABLE UNEVALUABLE
659_cvt RAD21 DOCK9 chr8 116858572 chr13 98824419 TRANSLOCATION TRUTH_659_cvt_3 TRUTH truth 25.0 0 0 1080 469 hg19 8 117870811.0 13 99476673.0 0 469 EVALUABLE BAM_REFUTED
659_cvt ATP1B2 TP53 chr17 7657162 chr17 7676218 INVERSION TRUTH_659_cvt_4 TRUTH truth 260.0 0 0 18 4649 hg19 17 7560480.0 17 7579536.0 0 18 UNEVALUABLE UNEVALUABLE
659_d0V TACC3 FGFR3 chr4 1723640 chr4 1806991 DUP CALL_659_d0V_0 FP call 0.0028 0 0 1544 15636 hg19 4 1725367.0 4 1808718.0 0 1544 EVALUABLE BAM_REFUTED
659_d0V TRIM52 intergenic(RACK1,TRIM52) chr5 181260755 chr5 181253366 BND CALL_659_d0V_1 TP_DUP call 0.0 0 0 2686 19 hg19 5 180687756.0 5 180680366.0 0 19 UNEVALUABLE UNEVALUABLE
659_d0V TNPO3 intergenic(TNPO3,TSPAN33) chr7 128974882 chr7 129064711 DUP CALL_659_d0V_2 TP call 0.0232 0 0 462 7 hg19 7 128614936.0 7 128704765.0 0 7 UNEVALUABLE UNEVALUABLE
659_d0V intergenic(FTH1,INCENP) TRIM32 chr11 62018589 chr9 116697743 BND CALL_659_d0V_3 FP call 0.999 0 0 23 2652 hg19 11 61786061.0 9 119460022.0 0 23 EVALUABLE BAM_REFUTED
659_d0V PRKCB METTL27 chr16 24110310 chr7 73834999 BND CALL_659_d0V_4 FP call 0.0001 4 0 4 1761 hg19 16 24121631.0 7 73249329.0 4 4 UNEVALUABLE UNEVALUABLE
659_d0V intergenic(NPIPB13,CD2BP2) DCTPP1 chr16 30346044 chr16 30424466 DUP CALL_659_d0V_5 TP call 0.1135 0 0 0 1707 hg19 16 30357365.0 16 30435787.0 0 0 UNEVALUABLE UNEVALUABLE
659_d0V PKN1 TECR chr19 14470611 chr19 14525357 DUP CALL_659_d0V_6 FP call 0.0018 0 0 1049 55 hg19 19 14581423.0 19 14636169.0 0 55 EVALUABLE BAM_REFUTED
659_d0V OR7C2 NOTCH3 chr19 14941973 chr19 15166035 DUP CALL_659_d0V_7 FP call 0.0009 0 0 3784 4245 hg19 19 15052785.0 19 15276846.0 0 3784 EVALUABLE BAM_REFUTED
659_d0V TNPO3 intergenic(TNPO3,TSPAN33) chr7 128974882 chr7 129064778 DUPLICATION TRUTH_659_d0V_8 TRUTH truth 23.0 0 0 462 7 hg19 7 128614936.0 7 128704832.0 0 7 UNEVALUABLE UNEVALUABLE
659_d0V intergenic(NPIPB13,CD2BP2) DCTPP1 chr16 30346043 chr16 30424465 DUPLICATION TRUTH_659_d0V_9 TRUTH truth 54.0 0 0 0 1707 hg19 16 30357364.0 16 30435786.0 0 0 UNEVALUABLE UNEVALUABLE
659_d0V intergenic(RACK1,TRIM52) TRIM52 chr5 181253363 chr5 181260754 INVERSION TRUTH_659_d0V_10 TRUTH truth 55.0 0 0 19 2697 hg19 5 180680363.0 5 180687755.0 0 19 UNEVALUABLE UNEVALUABLE
659_dCI S100A10 ABHD12 chr1 151986199 chr20 25389350 BND CALL_659_dCI_0 FP call 0.9987 0 0 491 9 hg19 1 151958675.0 20 25369986.0 0 9 UNEVALUABLE UNEVALUABLE
659_dCI LHX4 ACBD6 chr1 180248361 chr1 180280015 DUP CALL_659_dCI_1 FP call 0.7657 0 0 692 10 hg19 1 180217496.0 1 180249150.0 0 10 UNEVALUABLE UNEVALUABLE
659_dCI ACP1 intergenic(KCNK1,SLC35F3) chr2 272112 chr1 233836360 BND CALL_659_dCI_2 FP call 0.7936 0 0 1666 460 hg19 2 272112.0 1 233972106.0 0 460 EVALUABLE BAM_REFUTED
659_dCI MSH2 IGF2 chr2 47448561 chr11 2129991 BND CALL_659_dCI_3 FP call 0.9892 0 0 10 3 hg19 2 47675700.0 11 2151221.0 0 3 UNEVALUABLE UNEVALUABLE
659_dCI intergenic(CD8B2,ST6GAL2) STRAP chr2 106653018 chr12 15897898 BND CALL_659_dCI_4 FP call 0.0006 0 0 2 444 hg19 2 107269474.0 12 16050832.0 0 2 UNEVALUABLE UNEVALUABLE
659_dCI CACNA2D3 HSP90AA1 chr3 54471339 chr14 102081216 BND CALL_659_dCI_5 FP call 0.0378 0 0 0 410 hg19 3 54505366.0 14 102547553.0 0 0 UNEVALUABLE UNEVALUABLE
659_dCI IFT122 PLXND1 chr3 129499018 chr3 129584562 DUP CALL_659_dCI_6 FP call 0.7449 0 0 4 879 hg19 3 129217861.0 3 129303405.0 0 4 UNEVALUABLE UNEVALUABLE
659_dCI intergenic(OTOL1,SI) CTNNA1 chr3 164235845 chr5 138934018 BND CALL_659_dCI_7 FP call 0.0004 0 0 11 3422 hg19 3 163953633.0 5 138269707.0 0 11 UNEVALUABLE UNEVALUABLE
659_dCI TACC3 FGFR3 chr4 1714172 chr4 1806990 DUP CALL_659_dCI_8 FP call 0.0005 0 0 8 14363 hg19 4 1715899.0 4 1808717.0 0 8 UNEVALUABLE UNEVALUABLE
659_dCI intergenic(RBM46,NPY2R) NPY2R chr4 155197173 chr4 155214178 DUP CALL_659_dCI_9 FP call 0.0003 0 0 4 1759 hg19 4 156118325.0 4 156135330.0 0 4 UNEVALUABLE UNEVALUABLE
659_dCI intergenic(MATR3,PAIP2) SLC23A1 chr5 139332691 chr5 139378080 DUP CALL_659_dCI_10 FP call 0.9631 0 0 15 1674 hg19 5 138668380.0 5 138713769.0 0 15 UNEVALUABLE UNEVALUABLE
659_dCI RPS14 DOCK5 chr5 150446961 chr8 25223693 BND CALL_659_dCI_11 FP call 0.8736 0 0 722 3 hg19 5 149826524.0 8 25081209.0 0 3 UNEVALUABLE UNEVALUABLE
659_dCI intergenic(IBTK,TPBG) ABCC6 chr6 82343312 chr16 16159582 BND CALL_659_dCI_12 FP call 0.0001 0 0 2 418 hg19 6 83053029.0 16 16253439.0 0 2 UNEVALUABLE UNEVALUABLE
659_dCI ABTB2 MMADHC chr11 34335305 chr2 149570164 BND CALL_659_dCI_13 FP call 0.0007 0 0 645 555 hg19 11 34356852.0 2 150426678.0 0 555 EVALUABLE BAM_REFUTED
659_dCI BEST1 OR2H2 chr11 61964891 chr6 29589535 BND CALL_659_dCI_14 FP call 0.675 0 0 1593 6 hg19 11 61732363.0 6 29557312.0 0 6 UNEVALUABLE UNEVALUABLE
659_dCI FCHSD2 ARHGEF17 chr11 73032507 chr11 73367631 DUP CALL_659_dCI_15 TP call 0.5869 0 0 2 1064 hg19 11 72743552.0 11 73078676.0 0 2 UNEVALUABLE UNEVALUABLE
659_dCI intergenic(NAALAD2,CHORDC1) DNAH11 chr11 90199370 chr7 21787493 BND CALL_659_dCI_16 FP call 0.0002 0 0 13 555 hg19 11 89932538.0 7 21827111.0 0 13 UNEVALUABLE UNEVALUABLE
659_dCI PXN RNF10 chr12 120214841 chr12 120545517 DUP CALL_659_dCI_17 TP call 0.9961 0 0 2197 19 hg19 12 120652644.0 12 120983320.0 0 19 UNEVALUABLE UNEVALUABLE
659_dCI DIS3 intergenic(SHB,ALDH1B1) chr13 72759614 chr9 38185591 BND CALL_659_dCI_18 FP call 0.192 0 0 281 17 hg19 13 73333752.0 9 38185588.0 0 17 UNEVALUABLE UNEVALUABLE
659_dCI intergenic(IDH2,SEMA4B) SEMA4B chr15 90135456 chr15 90223633 DUP CALL_659_dCI_19 TP call 0.3926 0 0 2 1272 hg19 15 90678688.0 15 90766865.0 0 2 UNEVALUABLE UNEVALUABLE
659_dCI PKD1 intergenic(ZG16B,PRSS22) chr16 2110380 chr16 2844000 DUP CALL_659_dCI_20 TP call 0.6219 0 0 2416 13 hg19 16 2160381.0 16 2894001.0 0 13 UNEVALUABLE UNEVALUABLE
659_dCI intergenic(CES5A,GNAO1) TOP2A chr16 56006633 chr17 40388833 BND CALL_659_dCI_21 FP call 0.0372 0 0 4 53 hg19 16 56040545.0 17 38545085.0 0 4 UNEVALUABLE UNEVALUABLE
659_dCI GSDMB BRCA1 chr17 39912861 chr17 43115764 DEL CALL_659_dCI_22 TP call 0.9965 0 0 248 4498 hg19 17 38069114.0 17 41267781.0 0 248 EVALUABLE BAM_REFUTED
659_dCI RRAS SCAF1 chr19 49640036 chr19 49644533 BND CALL_659_dCI_23 FP call 0.1528 0 0 708 159 hg19 19 50143293.0 19 50147790.0 0 159 EVALUABLE BAM_REFUTED
659_dCI MAP3K15 DHRSX chrX 19372695 chrX 2228991 BND CALL_659_dCI_24 FP call 0.4142 0 0 775 4 hg19 X 19390813.0 X 2147032.0 0 4 UNEVALUABLE UNEVALUABLE
659_dCI CPXCR1 intergenic(OR6C65,OR6C76) chrX 88754140 chr12 55401542 BND CALL_659_dCI_25 FP call 0.9956 0 0 1283 932 hg19 X 88009141.0 12 55795326.0 0 932 EVALUABLE BAM_REFUTED
659_dCI CPXCR1 OR6C65 chrX 88754141 chr12 55401365 BND CALL_659_dCI_26 TP_DUP call 0.9789 0 0 1281 1212 hg19 X 88009142.0 12 55795149.0 0 1212 EVALUABLE BAM_REFUTED
659_dCI BTK CRACR2A chrX 101349346 chr12 3647267 BND CALL_659_dCI_27 FP call 0.0 0 0 354 66 hg19 X 100604334.0 12 3756433.0 0 66 EVALUABLE BAM_REFUTED
659_dCI NFASC ELK4 chr1 204901058 chr1 205600437 DUPLICATION TRUTH_659_dCI_28 TRUTH truth 34.0 0 0 4 319 hg19 1 204870186.0 1 205569565.0 0 4 UNEVALUABLE UNEVALUABLE
659_dCI MYPN intergenic(RAB11FIP2,FAM204A) chr10 68158593 chr10 118271864 INVERSION TRUTH_659_dCI_29 TRUTH truth 24.0 0 0 284 11 hg19 10 69918350.0 10 120031376.0 0 11 UNEVALUABLE UNEVALUABLE
659_dCI FCHSD2 ARHGEF17 chr11 73032506 chr11 73367630 DUPLICATION TRUTH_659_dCI_30 TRUTH truth 72.0 0 0 2 1064 hg19 11 72743551.0 11 73078675.0 0 2 UNEVALUABLE UNEVALUABLE
659_dCI OR6C65 CPXCR1 chr12 55401364 chrX 88754140 TRANSLOCATION TRUTH_659_dCI_31 TRUTH truth 44.0 0 0 1214 1283 hg19 12 55795148.0 X 88009141.0 0 1214 EVALUABLE BAM_REFUTED
659_dCI PXN RNF10 chr12 120214840 chr12 120545516 DUPLICATION TRUTH_659_dCI_32 TRUTH truth 57.0 0 0 2195 19 hg19 12 120652643.0 12 120983319.0 0 19 UNEVALUABLE UNEVALUABLE
659_dCI intergenic(IDH2,SEMA4B) SEMA4B chr15 90135455 chr15 90223632 DUPLICATION TRUTH_659_dCI_33 TRUTH truth 24.0 0 0 2 1272 hg19 15 90678687.0 15 90766864.0 0 2 UNEVALUABLE UNEVALUABLE
659_dCI PKD1 intergenic(ZG16B,PRSS22) chr16 2110385 chr16 2844033 DUPLICATION TRUTH_659_dCI_34 TRUTH truth 53.0 0 0 2427 14 hg19 16 2160386.0 16 2894034.0 0 14 UNEVALUABLE UNEVALUABLE
659_dCI GSDMB BRCA1 chr17 39912860 chr17 43115763 DELETION TRUTH_659_dCI_35 TRUTH truth 303.0 0 0 250 4499 hg19 17 38069113.0 17 41267780.0 0 250 EVALUABLE BAM_REFUTED
659_dLs intergenic(EYA3,PTAFR) TENT5C chr1 28129978 chr1 117627822 BND CALL_659_dLs_0 FP call 0.0 0 0 8 2 hg19 1 28456489.0 1 118170444.0 0 2 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(USP24,ENSG00000284686) NRG1 chr1 56138686 chr8 32690979 BND CALL_659_dLs_1 FP call 0.0 0 0 6 20 hg19 1 56604358.0 8 32548497.0 0 6 UNEVALUABLE UNEVALUABLE
659_dLs THBS3 MSTO1 chr1 155208807 chr1 155601027 DUP CALL_659_dLs_2 FP call 0.0119 0 0 3024 17 hg19 1 155178598.0 1 155570818.0 0 17 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(TIPRL,SFT2D2) ETV6 chr1 168214727 chr12 11859055 BND CALL_659_dLs_3 FP call 0.0 0 0 7 7093 hg19 1 168183965.0 12 12011989.0 0 7 UNEVALUABLE UNEVALUABLE
659_dLs SMYD2 DNAH14 chr1 214299202 chr1 225367828 DUP CALL_659_dLs_4 FP call 0.0001 0 0 1 657 hg19 1 214472545.0 1 225555530.0 0 1 UNEVALUABLE UNEVALUABLE
659_dLs RANBP2 FAM149B1 chr2 108771738 chr10 73192123 BND CALL_659_dLs_5 FP call 0.0 0 0 2037 295 hg19 2 109388194.0 10 74951881.0 0 295 EVALUABLE BAM_REFUTED
659_dLs intergenic(BCL2L11,ANAPC1) ETV1 chr2 111535855 chr7 13979864 BND CALL_659_dLs_6 FP call 0.0 0 0 6 0 hg19 2 112293432.0 7 14019489.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(BCL2L11,ANAPC1) AR chr2 111599095 chrX 67695836 BND CALL_659_dLs_7 FP call 0.0 0 0 4 7971 hg19 2 112356672.0 X 66915678.0 0 4 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(CXCR4,THSD7B) NRG1 chr2 136573137 chr8 32690980 BND CALL_659_dLs_8 FP call 0.0 0 0 0 20 hg19 2 137330707.0 8 32548498.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs AOX1 intergenic(ALDOA,PPP4C) chr2 200609324 chr16 30070850 BND CALL_659_dLs_9 FP call 0.0002 0 0 1156 43 hg19 2 201474047.0 16 30082171.0 0 43 EVALUABLE BAM_REFUTED
659_dLs CASP8 PHLPP1 chr2 201281897 chr18 62931996 BND CALL_659_dLs_10 FP call 0.0 0 0 655 38 hg19 2 202146620.0 18 60599229.0 0 38 EVALUABLE BAM_REFUTED
659_dLs FANCD2 NSD1 chr3 10048805 chr5 177191939 BND CALL_659_dLs_11 TP call 0.7724 0 0 264 1548 hg19 3 10090489.0 5 176618940.0 0 264 EVALUABLE BAM_REFUTED
659_dLs NBEAL2 INPP5E chr3 47002435 chr9 136434886 BND CALL_659_dLs_12 TP call 0.992 0 0 4365 939 hg19 3 47043925.0 9 139329338.0 0 939 EVALUABLE BAM_REFUTED
659_dLs intergenic(RPL29,DUSP7) STAB1 chr3 52012452 chr3 52522674 DUP CALL_659_dLs_13 TP call 0.9655 0 0 259 4620 hg19 3 52046468.0 3 52556690.0 0 259 EVALUABLE BAM_REFUTED
659_dLs POC1A BAP1 chr3 52126792 chr3 52406301 DUP CALL_659_dLs_14 TP call 0.4888 0 0 4 5110 hg19 3 52160808.0 3 52440317.0 0 4 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(COPB2,RBP2) AIMP2 chr3 139420094 chr7 6014168 BND CALL_659_dLs_15 FP call 0.0001 0 0 2 12 hg19 3 139138936.0 7 6053799.0 0 2 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(IGSF10,AADACL2) KIF3B chr3 151617170 chr20 32310962 BND CALL_659_dLs_16 FP call 0.0003 0 0 0 2701 hg19 3 151334958.0 20 30898765.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(OTOL1,SI) NRG1 chr3 162529198 chr8 32690980 BND CALL_659_dLs_17 FP call 0.0 0 0 21 20 hg19 3 162246986.0 8 32548498.0 0 20 EVALUABLE BAM_REFUTED
659_dLs intergenic(SERPINI1,GOLIM4) NRG1 chr3 167879677 chr8 32690980 BND CALL_659_dLs_18 FP call 0.0 0 0 6 20 hg19 3 167597465.0 8 32548498.0 0 6 UNEVALUABLE UNEVALUABLE
659_dLs PIK3CA intergenic(KCNMB3,ZNF639) chr3 179236229 chr3 179276712 DUP CALL_659_dLs_19 FP call 0.0 0 0 0 5 hg19 3 178954017.0 3 178994500.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs CCDC39 intergenic(CYRIA,RAD51AP2) chr3 180661943 chr2 16822034 BND CALL_659_dLs_20 FP call 0.0003 0 0 537 0 hg19 3 180379731.0 2 17003301.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs DCUN1D1 RAD54L2 chr3 182944898 chr3 51645827 BND CALL_659_dLs_21 FP call 0.0 0 0 420 1086 hg19 3 182662686.0 3 51679843.0 0 420 EVALUABLE BAM_REFUTED
659_dLs ACOX3 TRMT44 chr4 8422658 chr4 8449779 DUP CALL_659_dLs_22 FP call 0.3964 0 0 3 706 hg19 4 8424385.0 4 8451506.0 0 3 UNEVALUABLE UNEVALUABLE
659_dLs LGI2 DGKG chr4 25019196 chr3 186238401 BND CALL_659_dLs_23 FP call 0.0004 0 0 213 2 hg19 4 25020818.0 3 185956190.0 0 2 UNEVALUABLE UNEVALUABLE
659_dLs TEC ENSG00000282278 chr4 48178429 chr4 54264268 DUP CALL_659_dLs_24 FP call 0.0 0 0 0 1867 hg19 4 48180446.0 4 55130435.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs IGFBP7 FGF5 chr4 57074507 chr4 80287765 BND CALL_659_dLs_25 FP call 0.0001 0 0 1 1 hg19 4 57940673.0 4 81208919.0 0 1 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(TECRL,EPHA5) NRG1 chr4 64561698 chr8 32737599 BND CALL_659_dLs_26 FP call 0.0 0 0 16 13 hg19 4 65427416.0 8 32595117.0 0 13 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(TACR3,CXXC4) PPP3CA chr4 104043146 chr4 101196107 BND CALL_659_dLs_27 FP call 0.0 0 0 2 769 hg19 4 104964303.0 4 102117264.0 0 2 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(UGT8,NDST4) HLA-C chr4 114816296 chr6 31271175 BND CALL_659_dLs_28 FP call 0.0 0 0 1 11757 hg19 4 115737452.0 6 31238952.0 0 1 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(GATB,FBXW7) FBXW7 chr4 152320361 chr4 152321888 BND CALL_659_dLs_29 FP call 0.0 0 0 0 3 hg19 4 153241513.0 4 153243040.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs GPM6A NBN chr4 175658377 chr8 89932116 BND CALL_659_dLs_30 FP call 0.0 0 0 1 9 hg19 4 176579528.0 8 90944344.0 0 1 UNEVALUABLE UNEVALUABLE
659_dLs ADCY2 ETV6 chr5 7439529 chr12 11827086 BND CALL_659_dLs_31 FP call 0.0 0 0 0 13 hg19 5 7439642.0 12 11980020.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs PIK3R1 intergenic(PIK3R1,SLC30A5) chr5 68301670 chr5 68331393 DUP CALL_659_dLs_32 FP call 0.0004 0 0 11 0 hg19 5 67597498.0 5 67627221.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs BDP1 intergenic(TNFRSF11B,COLEC10) chr5 71501600 chr8 118990060 BND CALL_659_dLs_33 FP call 0.0037 0 0 271 6 hg19 5 70797427.0 8 120002299.0 0 6 UNEVALUABLE UNEVALUABLE
659_dLs MCCC2 intergenic(CARTPT,MAP1B) chr5 71634955 chr5 71769420 DUP CALL_659_dLs_34 TP call 0.9998 0 0 882 2 hg19 5 70930782.0 5 71065247.0 0 2 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(TMED7,CDO1) NRG1 chr5 115737693 chr8 32698342 BND CALL_659_dLs_35 FP call 0.0 0 0 0 8 hg19 5 115073390.0 8 32555860.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs ETF1 BRCA2 chr5 138515439 chr13 32399791 BND CALL_659_dLs_36 FP call 0.0 0 0 2 2320 hg19 5 137851128.0 13 32973928.0 0 2 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(HS3ST5,FRK) SOX2 chr6 114930939 chr3 181714315 BND CALL_659_dLs_37 FP call 0.0 0 0 0 0 hg19 6 115252103.0 3 181432103.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs PDE10A TRAF3 chr6 165722965 chr14 102906120 BND CALL_659_dLs_38 FP call 0.0 0 0 1 1819 hg19 6 166136453.0 14 103372457.0 0 1 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(INHBA,GLI3) INMT-MINDY4 chr7 41710850 chr7 30828257 BND CALL_659_dLs_39 FP call 0.0 0 0 0 373 hg19 7 41750448.0 7 30867873.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs MRPL32 PPIA chr7 42935072 chr7 44808140 BND CALL_659_dLs_40 FP call 0.0003 0 0 700 3 hg19 7 42974671.0 7 44847739.0 0 3 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(ANKRD7,KCND2) RNF139 chr7 119893278 chr8 124487207 BND CALL_659_dLs_41 FP call 0.0 0 0 0 2328 hg19 7 119533332.0 8 125499448.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs BNIP3L NUB1 chr8 26480245 chr7 151375921 BND CALL_659_dLs_42 FP call 0.0 0 0 2 249 hg19 8 26337761.0 7 151073007.0 0 2 UNEVALUABLE UNEVALUABLE
659_dLs NRG1 DSPP chr8 32690980 chr4 87611031 BND CALL_659_dLs_43 FP call 0.0 0 0 20 383 hg19 8 32548498.0 4 88532183.0 0 20 EVALUABLE BAM_REFUTED
659_dLs NRG1 intergenic(PRB2,ETV6) chr8 32738446 chr12 11506927 BND CALL_659_dLs_44 FP call 0.0 0 0 3 4 hg19 8 32595964.0 12 11659861.0 0 3 UNEVALUABLE UNEVALUABLE
659_dLs NRG1 CCNY chr8 32738446 chr10 35535036 BND CALL_659_dLs_45 FP call 0.0 0 0 3 2 hg19 8 32595964.0 10 35823964.0 0 2 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(RUNX1T1,TRIQK) STAT5B chr8 92671789 chr17 42201458 BND CALL_659_dLs_46 FP call 0.0 0 0 6 1401 hg19 8 93684017.0 17 40353476.0 0 6 UNEVALUABLE UNEVALUABLE
659_dLs SLA DUSP22 chr8 133040072 chr6 348908 BND CALL_659_dLs_47 FP call 0.0 0 0 1286 5906 hg19 8 134052317.0 6 348908.0 0 1286 EVALUABLE BAM_REFUTED
659_dLs intergenic(DMRT2,SMARCA2) PAX3 chr9 1116594 chr2 222205135 BND CALL_659_dLs_48 FP call 0.0 0 0 5 6847 hg19 9 1116594.0 2 223069854.0 0 5 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(GLIS3,SLC1A1) BRAF chr9 4465582 chr7 140787598 BND CALL_659_dLs_49 FP call 0.0 0 0 6 5724 hg19 9 4465582.0 7 140487398.0 0 6 UNEVALUABLE UNEVALUABLE
659_dLs CDKN2B intergenic(IZUMO3,TUSC1) chr9 22005112 chr9 24758784 DUP CALL_659_dLs_50 FP call 0.0 0 0 2 0 hg19 9 22005111.0 9 24758782.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(DMRTA1,ELAVL2) GREM1 chr9 22904064 chr15 32744915 BND CALL_659_dLs_51 FP call 0.0 0 0 2 8 hg19 9 22904063.0 15 33037116.0 0 2 UNEVALUABLE UNEVALUABLE
659_dLs GALT DNAI1 chr9 34650389 chr9 34458149 BND CALL_659_dLs_52 TP_DUP call 0.9997 0 0 501 632 hg19 9 34650386.0 9 34458147.0 0 501 EVALUABLE BAM_REFUTED
659_dLs intergenic(OSTF1,PCSK5) ACVR1 chr9 75613552 chr2 157736973 BND CALL_659_dLs_53 FP call 0.0 0 0 3 152 hg19 9 78228468.0 2 158593485.0 0 3 UNEVALUABLE UNEVALUABLE
659_dLs RC3H2 DENND1A chr9 122858860 chr9 123471666 DUP CALL_659_dLs_54 TP call 0.992 0 0 1583 1 hg19 9 125621139.0 9 126233945.0 0 1 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(ENSG00000235007,NTMT1) OSMR chr9 129339502 chr5 38940232 BND CALL_659_dLs_55 FP call 0.0 0 0 2 4 hg19 9 132101781.0 5 38940334.0 0 2 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(FIBCD1,LAMC3) CADM1 chr9 130955199 chr11 115209651 BND CALL_659_dLs_56 FP call 0.0 0 0 2 1386 hg19 9 133830586.0 11 115080371.0 0 2 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(NOTCH1,EGFL7) LCN10 chr9 136645023 chr9 136741915 DEL CALL_659_dLs_57 FP call 0.0046 0 0 2 1037 hg19 9 139539475.0 9 139636367.0 0 2 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(ADARB2,PFKP) NRG1 chr10 2493476 chr8 32690980 BND CALL_659_dLs_58 FP call 0.0 0 0 0 20 hg19 10 2535668.0 8 32548498.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(ITIH5,ITIH2) PPP2R2A chr10 7675254 chr8 26372267 BND CALL_659_dLs_59 FP call 0.0 0 0 15 0 hg19 10 7717217.0 8 26229783.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs DHTKD1 ZNF407 chr10 12084667 chr18 74767920 BND CALL_659_dLs_60 FP call 0.0 0 0 532 7 hg19 10 12126666.0 18 72479876.0 0 7 UNEVALUABLE UNEVALUABLE
659_dLs KIF5B intergenic(KCNV1,CSMD3) chr10 32021655 chr8 111887293 BND CALL_659_dLs_61 FP call 0.0 0 0 474 1 hg19 10 32310583.0 8 112899522.0 0 1 UNEVALUABLE UNEVALUABLE
659_dLs PCDH15 NRG1 chr10 55432114 chr8 32690980 BND CALL_659_dLs_62 FP call 0.0 0 0 0 20 hg19 10 57191874.0 8 32548498.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs ARID5B CSNK1G1 chr10 62095236 chr15 64261844 BND CALL_659_dLs_63 FP call 0.0 0 0 0 8 hg19 10 63854995.0 15 64554043.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs WAPL PAPSS2 chr10 86499871 chr10 87685434 DUP CALL_659_dLs_64 FP call 0.9987 0 0 2585 1 hg19 10 88259628.0 10 89445191.0 0 1 UNEVALUABLE UNEVALUABLE
659_dLs EIF3A C19orf12 chr10 119040538 chr19 29714908 BND CALL_659_dLs_65 FP call 0.0 0 0 11 6 hg19 10 120800050.0 19 30205815.0 0 6 UNEVALUABLE UNEVALUABLE
659_dLs RTN4RL2 BCOR chr11 57470948 chrX 40177050 BND CALL_659_dLs_66 FP call 0.0 0 0 7 1 hg19 11 57238421.0 X 40036303.0 0 1 UNEVALUABLE UNEVALUABLE
659_dLs PGR intergenic(PGR,TRPC6) chr11 101129316 chr11 101154318 DEL CALL_659_dLs_67 FP call 0.0 0 0 1046 2 hg19 11 101000047.0 11 101025049.0 0 2 UNEVALUABLE UNEVALUABLE
659_dLs TMPRSS5 KIF5B chr11 113688625 chr10 32026652 BND CALL_659_dLs_68 FP call 0.0 0 0 425 3 hg19 11 113559347.0 10 32315580.0 0 3 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(TUBA1B,TUBA1A) KDM1A chr12 49183696 chr1 23030595 BND CALL_659_dLs_69 TP_DUP call 0.9926 0 0 15 609 hg19 12 49577479.0 1 23357088.0 0 15 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(OR9K2,OR10A7) MAP3K13 chr12 55144466 chr3 185428656 BND CALL_659_dLs_70 FP call 0.0 0 0 0 1699 hg19 12 55538250.0 3 185146444.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs ENSG00000257411 intergenic(GLS2,RBMS2) chr12 56102370 chr12 56521706 DUP CALL_659_dLs_71 FP call 0.6457 0 0 2004 372 hg19 12 56496154.0 12 56915490.0 0 372 EVALUABLE BAM_REFUTED
659_dLs intergenic(POC1B-GALNT4,ATP2B1) POC1B-GALNT4 chr12 89547882 chr12 89523649 BND CALL_659_dLs_72 TP_DUP call 0.7956 0 0 1 5427 hg19 12 89941659.0 12 89917426.0 0 1 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(TBX3,MED13L) EPHA5 chr12 115217228 chr4 65321828 BND CALL_659_dLs_73 FP call 0.0 0 0 12 0 hg19 12 115655033.0 4 66187546.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs MPHOSPH9 intergenic(HMGN3,LCA5) chr12 123198282 chr6 79259805 BND CALL_659_dLs_74 FP call 0.0 0 0 403 4 hg19 12 123682829.0 6 79969522.0 0 4 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(TMEM132B,TMEM132C) NRG1 chr12 127369894 chr8 32690980 BND CALL_659_dLs_75 FP call 0.0 0 0 7 20 hg19 12 127854439.0 8 32548498.0 0 7 UNEVALUABLE UNEVALUABLE
659_dLs MTUS2 HGF chr13 28989746 chr7 81701269 BND CALL_659_dLs_76 FP call 0.0 0 0 0 1 hg19 13 29563883.0 7 81330585.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(OLFM4,PRR20A) NCOA3 chr13 55214715 chr20 47654849 BND CALL_659_dLs_77 FP call 0.0 0 0 3 0 hg19 13 55788850.0 20 46283593.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs PLEKHD1 NRG1 chr14 69487224 chr8 32690980 BND CALL_659_dLs_78 FP call 0.0 0 0 20 20 hg19 14 69953941.0 8 32548498.0 0 20 EVALUABLE BAM_REFUTED
659_dLs TECPR2 MSH2 chr14 102474567 chr2 47408475 BND CALL_659_dLs_79 FP call 0.0001 0 0 36 1214 hg19 14 102940904.0 2 47635614.0 0 36 EVALUABLE BAM_REFUTED
659_dLs SIN3A intergenic(MAN1A1,TBC1D32) chr15 75371243 chr6 120192516 BND CALL_659_dLs_80 FP call 0.0 0 0 8 2 hg19 15 75663584.0 6 120513662.0 0 2 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(ARRDC4,IGF1R) DICER1 chr15 98434630 chr14 95099821 BND CALL_659_dLs_81 FP call 0.0 0 0 10 2746 hg19 15 98977859.0 14 95566158.0 0 10 UNEVALUABLE UNEVALUABLE
659_dLs CLEC16A PPM1F chr16 10964104 chr22 21933523 BND CALL_659_dLs_82 FP call 0.9666 0 0 2 1099 hg19 16 11057961.0 22 22287895.0 0 2 UNEVALUABLE UNEVALUABLE
659_dLs ENSG00000188897 STAT6 chr16 11463435 chr12 57111236 BND CALL_659_dLs_83 FP call 0.0 0 0 3 3 hg19 16 11557291.0 12 57505019.0 0 3 UNEVALUABLE UNEVALUABLE
659_dLs BFAR intergenic(ARSJ,UGT8) chr16 14655145 chr4 114445415 BND CALL_659_dLs_84 FP call 0.0003 0 0 768 3 hg19 16 14749002.0 4 115366571.0 0 3 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(ADAD2,KCNG4) CDK6 chr16 84211191 chr7 92608381 BND CALL_659_dLs_85 FP call 0.0 0 0 14 1 hg19 16 84244797.0 7 92237695.0 0 1 UNEVALUABLE UNEVALUABLE
659_dLs NF1 intergenic(ZNF207,PSMD11) chr17 31236018 chr17 32406611 DUP CALL_659_dLs_86 FP call 0.0001 0 0 3207 5 hg19 17 29563036.0 17 30733630.0 0 5 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(CBX4,TBC1D16) CBX2 chr17 79909950 chr17 79784446 BND CALL_659_dLs_87 TP_DUP call 0.9616 0 0 2 4447 hg19 17 77883749.0 17 77758245.0 0 2 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(ZNF521,SS18) NRG1 chr18 25975704 chr8 32740066 BND CALL_659_dLs_88 FP call 0.0 0 0 14 7 hg19 18 23555668.0 8 32597584.0 0 7 UNEVALUABLE UNEVALUABLE
659_dLs PIK3C3 intergenic(ZPBP2,GSDMB) chr18 42050012 chr17 39898624 BND CALL_659_dLs_89 FP call 0.0 0 0 317 24 hg19 18 39629976.0 17 38054877.0 0 24 EVALUABLE BAM_REFUTED
659_dLs SETBP1 SLC14A2 chr18 45068012 chr18 45317602 DUP CALL_659_dLs_90 FP call 0.0728 0 0 1 0 hg19 18 42647977.0 18 42897567.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(MC4R,CDH20) ETV1 chr18 61054470 chr7 13978418 BND CALL_659_dLs_91 FP call 0.0 0 0 4 1 hg19 18 58721703.0 7 14018043.0 0 1 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(NETO1,FBXO15) FSIP2 chr18 74043006 chr2 185805573 BND CALL_659_dLs_92 FP call 0.0 0 0 0 1891 hg19 18 71710241.0 2 186670300.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(UQCRFS1,VSTM2B) TOX3 chr19 29426665 chr16 52439490 BND CALL_659_dLs_93 FP call 0.0 0 0 4 2414 hg19 19 29917572.0 16 52473402.0 0 4 UNEVALUABLE UNEVALUABLE
659_dLs SPTBN4 BCR chr19 40532175 chr22 23265982 BND CALL_659_dLs_94 FP call 0.0 0 0 622 6 hg19 19 41038082.0 22 23608169.0 0 6 UNEVALUABLE UNEVALUABLE
659_dLs ARHGAP35 SLC8A2 chr19 46918830 chr19 47457531 DUP CALL_659_dLs_95 TP call 0.4085 0 0 1958 1725 hg19 19 47422087.0 19 47960788.0 0 1725 EVALUABLE BAM_REFUTED
659_dLs ZNF808 PPP2R1A chr19 52541306 chr19 52210077 BND CALL_659_dLs_96 FP call 0.0004 0 0 56 5 hg19 19 53044559.0 19 52713330.0 0 5 UNEVALUABLE UNEVALUABLE
659_dLs NCOA3 intergenic(TEX13C,DCAF12L2) chr20 47634020 chrX 125836473 BND CALL_659_dLs_97 FP call 0.0 0 0 1289 1 hg19 20 46262764.0 X 124970455.0 0 1 UNEVALUABLE UNEVALUABLE
659_dLs CDH26 intergenic(CDH26,CDH4) chr20 60012625 chr20 60312782 DUP CALL_659_dLs_98 TP call 0.9595 0 0 803 1 hg19 20 58587680.0 20 58887840.0 0 1 UNEVALUABLE UNEVALUABLE
659_dLs TCFL5 DIDO1 chr20 62843614 chr20 62881193 DUP CALL_659_dLs_99 TP call 0.9986 0 0 0 4728 hg19 20 61474966.0 20 61512545.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs SLC17A9 BABAM2 chr20 62953242 chr2 27905707 BND CALL_659_dLs_100 FP call 0.0 0 0 1330 1 hg19 20 61584594.0 2 28128574.0 0 1 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(TPTE,POTED) NCOA3 chr21 13246787 chr20 47654849 BND CALL_659_dLs_101 FP call 0.0 0 0 0 0 hg19 21 14619108.0 20 46283593.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(USP25,CXADR) NRG1 chr21 16462461 chr8 32690980 BND CALL_659_dLs_102 FP call 0.0 0 0 3 20 hg19 21 17834781.0 8 32548498.0 0 3 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(NCAM2,MRPL39) TMPRSS2 chr21 21681659 chr21 41507008 DEL CALL_659_dLs_103 FP call 0.0 0 0 1 13095 hg19 21 23053979.0 21 42878935.0 0 1 UNEVALUABLE UNEVALUABLE
659_dLs GRIK1 IRS1 chr21 29667226 chr2 226733547 BND CALL_659_dLs_104 FP call 0.0 0 0 0 2 hg19 21 31039546.0 2 227598263.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(TAFA5,BRD1) ABCA5 chr22 49423949 chr17 69274061 BND CALL_659_dLs_105 FP call 0.0001 0 0 1 665 hg19 22 49817598.0 17 67270202.0 0 1 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(TAFA5,BRD1) MAPK12 chr22 49697383 chr22 50250429 BND CALL_659_dLs_106 TP call 0.998 0 0 2 1829 hg19 22 50091031.0 22 50688858.0 0 2 UNEVALUABLE UNEVALUABLE
659_dLs PHKA2 intergenic(DPP10,DDX18) chrX 18924066 chr2 116116513 BND CALL_659_dLs_107 FP call 0.0 0 0 796 0 hg19 X 18942184.0 2 116874089.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(TGIF2LX,PABPC5) AR chrX 90747661 chrX 67695297 BND CALL_659_dLs_108 FP call 0.0 0 0 0 9825 hg19 X 90002660.0 X 66915139.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs XIAP intergenic(TPBG,UBE3D) chrX 123912456 chr6 82696756 BND CALL_659_dLs_109 FP call 0.0 0 0 2 13 hg19 X 123046306.0 6 83406473.0 0 2 UNEVALUABLE UNEVALUABLE
659_dLs XIAP GPR119 chrX 123912458 chrX 130380659 DEL CALL_659_dLs_110 FP call 0.0028 0 0 2 9 hg19 X 123046308.0 X 129514633.0 0 2 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(MAGEC2,SPANXN4) NRG1 chrX 143008781 chr8 32690980 BND CALL_659_dLs_111 FP call 0.0 0 0 16 20 hg19 X 142096567.0 8 32548498.0 0 16 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(TSPY10,USP9Y) ABL1 chrY 12027230 chr9 130887145 BND CALL_659_dLs_112 FP call 0.0 0 0 0 1 hg19 Y 14147936.0 9 133762532.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(.,.) HLA-DRB5 chr6_GL000256v2_alt 3893222 chr6 32517649 BND CALL_659_dLs_113 FP call 0.0001 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_dLs KDM1A intergenic(TUBA1B,TUBA1A) chr1 23030591 chr12 49183695 TRANSLOCATION TRUTH_659_dLs_114 TRUTH truth 24.0 0 0 609 16 hg19 1 23357084.0 12 49577478.0 0 16 UNEVALUABLE UNEVALUABLE
659_dLs FANCD2 NSD1 chr3 10048804 chr5 177191938 TRANSLOCATION TRUTH_659_dLs_115 TRUTH truth 60.0 0 0 256 1548 hg19 3 10090488.0 5 176618939.0 0 256 EVALUABLE BAM_REFUTED
659_dLs NBEAL2 INPP5E chr3 47002434 chr9 136434885 TRANSLOCATION TRUTH_659_dLs_116 TRUTH truth 78.0 0 0 4360 939 hg19 3 47043924.0 9 139329337.0 0 939 EVALUABLE BAM_REFUTED
659_dLs intergenic(RPL29,DUSP7) STAB1 chr3 52012451 chr3 52522673 DUPLICATION TRUTH_659_dLs_117 TRUTH truth 71.0 0 0 259 4618 hg19 3 52046467.0 3 52556689.0 0 259 EVALUABLE BAM_REFUTED
659_dLs POC1A BAP1 chr3 52126791 chr3 52406300 DUPLICATION TRUTH_659_dLs_118 TRUTH truth 277.0 0 0 4 5119 hg19 3 52160807.0 3 52440316.0 0 4 UNEVALUABLE UNEVALUABLE
659_dLs DNAH1 BAP1 chr3 52394932 chr3 52405604 INVERSION TRUTH_659_dLs_119 TRUTH truth 38.0 0 0 2985 5516 hg19 3 52428948.0 3 52439620.0 0 2985 EVALUABLE BAM_REFUTED
659_dLs MCCC2 intergenic(CARTPT,MAP1B) chr5 71634954 chr5 71769419 DUPLICATION TRUTH_659_dLs_120 TRUTH truth 74.0 0 0 882 2 hg19 5 70930781.0 5 71065246.0 0 2 UNEVALUABLE UNEVALUABLE
659_dLs DNAI1 ENSG00000258728 chr9 34458146 chr9 34650388 INVERSION TRUTH_659_dLs_121 TRUTH truth 144.0 0 0 632 501 hg19 9 34458144.0 9 34650385.0 0 501 EVALUABLE BAM_REFUTED
659_dLs RC3H2 DENND1A chr9 122858859 chr9 123471665 DUPLICATION TRUTH_659_dLs_122 TRUTH truth 23.0 0 0 1584 1 hg19 9 125621138.0 9 126233944.0 0 1 UNEVALUABLE UNEVALUABLE
659_dLs GALNT4 intergenic(POC1B-GALNT4,ATP2B1) chr12 89523648 chr12 89547881 INVERSION TRUTH_659_dLs_123 TRUTH truth 25.0 0 0 5427 1 hg19 12 89917425.0 12 89941658.0 0 1 UNEVALUABLE UNEVALUABLE
659_dLs CBX2 intergenic(CBX4,TBC1D16) chr17 79784581 chr17 79910109 INVERSION TRUTH_659_dLs_124 TRUTH truth 104.0 0 0 4155 7 hg19 17 77758380.0 17 77883908.0 0 7 UNEVALUABLE UNEVALUABLE
659_dLs ARHGAP35 SLC8A2 chr19 46918829 chr19 47457530 DUPLICATION TRUTH_659_dLs_125 TRUTH truth 51.0 0 0 1956 1727 hg19 19 47422086.0 19 47960787.0 0 1727 EVALUABLE BAM_REFUTED
659_dLs CDH26 intergenic(CDH26,CDH4) chr20 60012624 chr20 60312781 DUPLICATION TRUTH_659_dLs_126 TRUTH truth 28.0 0 0 803 1 hg19 20 58587679.0 20 58887839.0 0 1 UNEVALUABLE UNEVALUABLE
659_dLs TCFL5 DIDO1 chr20 62843613 chr20 62881192 DUPLICATION TRUTH_659_dLs_127 TRUTH truth 37.0 0 0 0 4727 hg19 20 61474965.0 20 61512544.0 0 0 UNEVALUABLE UNEVALUABLE
659_dLs intergenic(TAFA5,BRD1) MAPK12 chr22 49697381 chr22 50250427 INVERSION TRUTH_659_dLs_128 TRUTH truth 25.0 0 0 2 1826 hg19 22 50091029.0 22 50688856.0 0 2 UNEVALUABLE UNEVALUABLE
659_dT3 LYPD1 NCKAP5 chr2 132671430 chr2 132783169 DEL CALL_659_dT3_0 FP call 0.4506 0 0 0 3492 hg19 2 133429003.0 2 133540742.0 0 0 UNEVALUABLE UNEVALUABLE
659_dT3 CREB1 PLEKHM3 chr2 207575403 chr2 208009108 DUP CALL_659_dT3_1 TP call 0.9546 0 0 735 0 hg19 2 208440127.0 2 208873832.0 0 0 UNEVALUABLE UNEVALUABLE
659_dT3 HLA-A intergenic(HLA-A,POLR1H) chr6 29945199 chr6 30009430 DUP CALL_659_dT3_2 FP call 0.0 0 0 7830 2993 hg19 6 29912976.0 6 29977207.0 0 2993 EVALUABLE BAM_REFUTED
659_dT3 PRKACA TECR chr19 14116102 chr19 14517452 DEL CALL_659_dT3_3 TP call 0.895 0 0 0 7293 hg19 19 14226914.0 19 14628264.0 0 0 UNEVALUABLE UNEVALUABLE
659_dT3 CREB1 PLEKHM3 chr2 207575402 chr2 208009107 DUPLICATION TRUTH_659_dT3_4 TRUTH truth 55.0 0 0 735 0 hg19 2 208440126.0 2 208873831.0 0 0 UNEVALUABLE UNEVALUABLE
659_dT3 PRKACA TECR chr19 14116101 chr19 14517451 DELETION TRUTH_659_dT3_5 TRUTH truth 153.0 0 0 0 7293 hg19 19 14226913.0 19 14628263.0 0 0 UNEVALUABLE UNEVALUABLE
659_dYT KCNN3 MEF2D chr1 154849109 chr1 156468871 DUP CALL_659_dYT_0 TP call 0.9796 0 0 0 2070 hg19 1 154821585.0 1 156438663.0 0 0 UNEVALUABLE UNEVALUABLE
659_dYT intergenic(SYT13,CHST1) PI4KA chr11 45572138 chr22 20711378 BND CALL_659_dYT_1 FP call 0.001 0 0 18 309 hg19 11 45593688.0 22 21065666.0 0 18 UNEVALUABLE UNEVALUABLE
659_dYT intergenic(RELA,KAT5) C2CD3 chr11 65688578 chr11 74085818 BND CALL_659_dYT_2 TP call 0.0838 0 0 3 953 hg19 11 65456049.0 11 73796863.0 0 3 UNEVALUABLE UNEVALUABLE
659_dYT RNF121 intergenic(IGFL2,IGFL1) chr11 71960764 chr19 46192421 BND CALL_659_dYT_3 TP call 0.9902 0 0 800 2 hg19 11 71671810.0 19 46695678.0 0 2 UNEVALUABLE UNEVALUABLE
659_dYT AGAP2 intergenic(ATP23,LRIG3) chr12 57734054 chr12 58208738 DUP CALL_659_dYT_4 TP call 0.9996 0 0 1478 3 hg19 12 58127837.0 12 58602521.0 0 3 UNEVALUABLE UNEVALUABLE
659_dYT intergenic(RTL1,DIO3) KLC1 chr14 100971967 chr14 103698630 BND CALL_659_dYT_5 FP call 0.5573 0 0 0 1301 hg19 14 101438304.0 14 104164967.0 0 0 UNEVALUABLE UNEVALUABLE
659_dYT DNAH9 NCOR1 chr17 11869183 chr17 16041737 DEL CALL_659_dYT_6 TP call 0.7754 0 0 763 10 hg19 17 11772500.0 17 15945051.0 0 10 UNEVALUABLE UNEVALUABLE
659_dYT GSDMA RECQL4 chr17 39962752 chr8 144511975 BND CALL_659_dYT_7 FP call 0.0 0 0 8 8402 hg19 17 38119005.0 8 145737358.0 0 8 UNEVALUABLE UNEVALUABLE
659_dYT intergenic(ADCYAP1,METTL4) EMILIN2 chr18 2216920 chr18 2913314 DUP CALL_659_dYT_8 TP call 0.7659 0 0 0 1132 hg19 18 2216920.0 18 2913312.0 0 0 UNEVALUABLE UNEVALUABLE
659_dYT IL17RA CRYBB1 chr22 17109190 chr22 26608850 BND CALL_659_dYT_9 TP call 0.9998 0 0 3984 3 hg19 22 17590080.0 22 27004814.0 0 3 UNEVALUABLE UNEVALUABLE
659_dYT KLHL22 AIFM3 chr22 20467481 chr22 20977067 DUP CALL_659_dYT_10 TP call 0.9993 0 0 27 1898 hg19 22 20821768.0 22 21331356.0 0 27 EVALUABLE BAM_REFUTED
659_dYT EIF3D intergenic(TTLL1,BIK) chr22 36526073 chr22 43108897 DEL CALL_659_dYT_11 FP call 0.7978 0 0 1151 6 hg19 22 36922120.0 22 43504903.0 0 6 UNEVALUABLE UNEVALUABLE
659_dYT EFCAB6 SYN3 chr22 43764797 chr22 32868974 BND CALL_659_dYT_12 TP_DUP call 0.9616 0 0 176 774 hg19 22 44160677.0 22 33264961.0 0 176 EVALUABLE BAM_REFUTED
659_dYT ATG13 TTC28 chr11 46618881 chr22 28163129 TRANSLOCATION TRUTH_659_dYT_13 TRUTH truth 95.0 0 0 3 2083 hg19 11 46640431.0 22 28559117.0 0 3 UNEVALUABLE UNEVALUABLE
659_dYT DNAH9 NCOR1 chr17 11869182 chr17 16041736 DELETION TRUTH_659_dYT_14 TRUTH truth 28.0 0 0 763 10 hg19 17 11772499.0 17 15945050.0 0 10 UNEVALUABLE UNEVALUABLE
659_dYT KLHL22 AIFM3 chr22 20467480 chr22 20977066 DUPLICATION TRUTH_659_dYT_15 TRUTH truth 210.0 0 0 27 1904 hg19 22 20821767.0 22 21331355.0 0 27 EVALUABLE BAM_REFUTED
659_dYT AGAP2 intergenic(ATP23,LRIG3) chr12 57734053 chr12 58208737 DUPLICATION TRUTH_659_dYT_16 TRUTH truth 624.0 0 0 1476 3 hg19 12 58127836.0 12 58602520.0 0 3 UNEVALUABLE UNEVALUABLE
659_dYT intergenic(RELA,KAT5) C2CD3 chr11 65688576 chr11 74085816 INVERSION TRUTH_659_dYT_17 TRUTH truth 25.0 0 0 3 953 hg19 11 65456047.0 11 73796861.0 0 3 UNEVALUABLE UNEVALUABLE
659_dYT IL17RA CRYBB1 chr22 17109189 chr22 26608849 INVERSION TRUTH_659_dYT_18 TRUTH truth 310.0 0 0 3981 3 hg19 22 17590079.0 22 27004813.0 0 3 UNEVALUABLE UNEVALUABLE
659_dYT intergenic(ADCYAP1,METTL4) LPIN2 chr18 2216919 chr18 2913313 DUPLICATION TRUTH_659_dYT_19 TRUTH truth 76.0 0 0 0 1132 hg19 18 2216919.0 18 2913311.0 0 0 UNEVALUABLE UNEVALUABLE
659_dYT SYN3 EFCAB6 chr22 32868972 chr22 43764795 INVERSION TRUTH_659_dYT_20 TRUTH truth 53.0 0 0 774 169 hg19 22 33264959.0 22 44160675.0 0 169 EVALUABLE BAM_REFUTED
659_dYT RNF121 intergenic(IGFL2,IGFL1) chr11 71960763 chr19 46192420 TRANSLOCATION TRUTH_659_dYT_21 TRUTH truth 60.0 0 0 800 2 hg19 11 71671809.0 19 46695677.0 0 2 UNEVALUABLE UNEVALUABLE
659_dYT KCNN3 MEF2D chr1 154849108 chr1 156468870 DUPLICATION TRUTH_659_dYT_22 TRUTH truth 58.0 0 0 0 2072 hg19 1 154821584.0 1 156438662.0 0 0 UNEVALUABLE UNEVALUABLE
659_e2p CNIH4 intergenic(ECHDC1,KIAA0408) chr1 224356989 chr6 127416887 BND CALL_659_e2p_0 FP call 0.0031 0 0 383 21 hg19 1 224544691.0 6.0 127738032.0 0 21 EVALUABLE BAM_REFUTED
659_e2p CLSTN2 CAV3 chr3 140459330 chr3 8767770 BND CALL_659_e2p_1 FP call 0.0001 0 0 900 3375 hg19 3 140178172.0 3.0 8809456.0 0 900 EVALUABLE BAM_REFUTED
659_e2p TACC3 FGFR3 chr4 1743801 chr4 1807785 DUP CALL_659_e2p_2 TP call 0.9153 0 0 21 13011 hg19 4 1745528.0 4.0 1809512.0 0 21 EVALUABLE BAM_REFUTED
659_e2p HLA-A intergenic(MICA,MICB) chr6 29943874 chr6 31462498 BND CALL_659_e2p_3 FP call 0.0005 0 0 6708 1039 hg19 6 29911651.0 6.0 31430275.0 0 1039 EVALUABLE BAM_REFUTED
659_e2p HLA-C HLA-B chr6 31270781 chr6 31355952 DEL CALL_659_e2p_4 FP call 0.0002 60 0 9191 9988 hg19 6 31238558.0 6.0 31323729.0 60 9191 EVALUABLE BAM_CONFIRMED
659_e2p intergenic(TRIL,CPVL) ACHE chr7 28959040 chr7 100893681 DUP CALL_659_e2p_5 TP call 0.9996 0 0 3 4901 hg19 7 28998656.0 7.0 100491302.0 0 3 UNEVALUABLE UNEVALUABLE
659_e2p intergenic(TMEM243,CROT) ABCB1 chr7 87235726 chr7 87503712 DEL CALL_659_e2p_6 FP call 0.2061 0 0 2 242 hg19 7 86865042.0 7.0 87133028.0 0 2 UNEVALUABLE UNEVALUABLE
659_e2p POLR3D intergenic(CAMKV,MST1R) chr8 22250492 chr3 49881999 BND CALL_659_e2p_7 TP_DUP call 0.8917 0 0 1104 0 hg19 8 22108005.0 3.0 49919432.0 0 0 UNEVALUABLE UNEVALUABLE
659_e2p ITIH2 intergenic(EGR2,NRBF2) chr10 7705141 chr10 63049856 DEL CALL_659_e2p_8 FP call 0.138 0 0 318 5 hg19 10 7747104.0 10.0 64809616.0 0 5 UNEVALUABLE UNEVALUABLE
659_e2p SPINT1 intergenic(RHOV,VPS18) chr15 40854658 chr15 40889163 DUP CALL_659_e2p_9 FP call 0.115 0 0 1710 24 hg19 15 41146856.0 15.0 41181361.0 0 24 EVALUABLE BAM_REFUTED
659_e2p TBC1D2B ADAMTS7 chr15 77984589 chr15 78768252 BND CALL_659_e2p_10 FP call 0.0002 14 0 744 841 hg19 15 78276931.0 15.0 79060594.0 14 744 EVALUABLE BAM_CONFIRMED
659_e2p BRD7 intergenic(THY1,NECTIN1) chr16 50323694 chr11 119530148 BND CALL_659_e2p_11 FP call 0.1114 0 0 307 0 hg19 16 50357605.0 11.0 119400858.0 0 0 UNEVALUABLE UNEVALUABLE
659_e2p TCF4 MLLT3 chr18 55586126 chr9 20414152 BND CALL_659_e2p_12 FP call 0.0 0 0 1427 2751 hg19 18 53253357.0 9.0 20414150.0 0 1427 EVALUABLE BAM_REFUTED
659_e2p PASD1 KCNMB3 chrX 151648298 chr3 179239823 BND CALL_659_e2p_13 FP call 0.0001 0 0 809 316 hg19 X 150816770.0 3.0 178957611.0 0 316 EVALUABLE BAM_REFUTED
659_e2p intergenic(.,.) MUC3A chrUn_JTFH01000054v1_decoy 3219 chr7 100952792 BND CALL_659_e2p_14 FP call 0.0 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_e2p intergenic(CAMKV,MST1R) POLR3D chr3 49881998 chr8 22250491 TRANSLOCATION TRUTH_659_e2p_15 TRUTH truth 38.0 0 0 0 1104 hg19 3 49919431.0 8.0 22108004.0 0 0 UNEVALUABLE UNEVALUABLE
659_e2p TACC3 FGFR3 chr4 1743800 chr4 1807784 DUPLICATION TRUTH_659_e2p_16 TRUTH truth 125.0 0 0 21 13019 hg19 4 1745527.0 4.0 1809511.0 0 21 EVALUABLE BAM_REFUTED
659_e2p intergenic(TRIL,CPVL) ACHE chr7 28959039 chr7 100893680 DUPLICATION TRUTH_659_e2p_17 TRUTH truth 91.0 0 0 3 4899 hg19 7 28998655.0 7.0 100491301.0 0 3 UNEVALUABLE UNEVALUABLE
659_eEE MIGA1 IGF1R chr1 77803766 chr15 98963045 BND CALL_659_eEE_0 FP call 0.0 0 0 225 0 hg19 1 78269451.0 15 99506274.0 0 0 UNEVALUABLE UNEVALUABLE
659_eEE intergenic(AMPD1,NRAS) NRAS chr1 114704094 chr1 114704552 DUP CALL_659_eEE_1 FP call 0.0003 0 0 0 0 hg19 1 115246715.0 1 115247173.0 0 0 UNEVALUABLE UNEVALUABLE
659_eEE PLB1 NRG1 chr2 28601499 chr8 32640246 BND CALL_659_eEE_2 FP call 0.0 0 0 750 11 hg19 2 28824366.0 8 32497765.0 0 11 UNEVALUABLE UNEVALUABLE
659_eEE THSD7B SOX9 chr2 136888982 chr17 72125896 BND CALL_659_eEE_3 FP call 0.0 0 0 0 0 hg19 2 137646552.0 17 70122037.0 0 0 UNEVALUABLE UNEVALUABLE
659_eEE intergenic(NXPH2,LRP1B) NRG1 chr2 140091897 chr8 32640246 BND CALL_659_eEE_4 FP call 0.0 0 0 0 11 hg19 2 140849466.0 8 32497765.0 0 0 UNEVALUABLE UNEVALUABLE
659_eEE intergenic(FIGN,GRB14) ATM chr2 163905273 chr11 108303026 BND CALL_659_eEE_5 FP call 0.0 0 0 0 1330 hg19 2 164761783.0 11 108173753.0 0 0 UNEVALUABLE UNEVALUABLE
659_eEE ALS2 SEPTIN12 chr2 201762069 chr16 4785859 BND CALL_659_eEE_6 FP call 0.0 0 0 1091 1096 hg19 2 202626792.0 16 4835860.0 0 1091 EVALUABLE BAM_REFUTED
659_eEE intergenic(VWC2L,BARD1) BARD1 chr2 214725553 chr2 214725701 BND CALL_659_eEE_7 FP call 0.0 0 0 0 0 hg19 2 215590277.0 2 215590425.0 0 0 UNEVALUABLE UNEVALUABLE
659_eEE ABCA12 SPAG16 chr2 214989354 chr2 213686951 BND CALL_659_eEE_8 FP call 0.0 0 0 1082 5 hg19 2 215854078.0 2 214551675.0 0 5 UNEVALUABLE UNEVALUABLE
659_eEE intergenic(SPP2,ARL4C) NEGR1 chr2 234345293 chr1 71404558 BND CALL_659_eEE_9 FP call 0.0 0 0 14 0 hg19 2 235253937.0 1 71870241.0 0 0 UNEVALUABLE UNEVALUABLE
659_eEE intergenic(IP6K1,CDHR4) SOX9 chr3 49790228 chr17 72125896 BND CALL_659_eEE_10 FP call 0.0 0 0 50 0 hg19 3 49827661.0 17 70122037.0 0 0 UNEVALUABLE UNEVALUABLE
659_eEE intergenic(DCBLD2,COL8A1) BRAF chr3 99257121 chr7 140787394 BND CALL_659_eEE_11 FP call 0.0 0 0 8 4324 hg19 3 98975965.0 7 140487194.0 0 8 UNEVALUABLE UNEVALUABLE
659_eEE B3GNT5 CACNA1A chr3 183270240 chr19 13598275 BND CALL_659_eEE_12 FP call 0.0001 0 0 3053 0 hg19 3 182988028.0 19 13709089.0 0 0 UNEVALUABLE UNEVALUABLE
659_eEE intergenic(LDB2,QDPR) NRG1 chr4 17192514 chr8 32640247 BND CALL_659_eEE_13 FP call 0.0 0 0 2 11 hg19 4 17194137.0 8 32497766.0 0 2 UNEVALUABLE UNEVALUABLE
659_eEE intergenic(RAPGEF2,FSTL5) FGFR2 chr4 160198093 chr10 121577312 BND CALL_659_eEE_14 FP call 0.0 0 0 0 2 hg19 4 161119245.0 10 123336826.0 0 0 UNEVALUABLE UNEVALUABLE
659_eEE MSH3 intergenic(ACTBL2,PLK2) chr5 80775687 chr5 57768930 BND CALL_659_eEE_15 FP call 0.0 0 0 162 0 hg19 5 80071506.0 5 57064757.0 0 0 UNEVALUABLE UNEVALUABLE
659_eEE HMMR SLIT3 chr5 163484095 chr5 169031398 DUP CALL_659_eEE_16 FP call 0.0016 0 0 274 0 hg19 5 162911101.0 5 168458403.0 0 0 UNEVALUABLE UNEVALUABLE
659_eEE NCR2 CHD2 chr6 41338636 chr15 93020715 BND CALL_659_eEE_17 FP call 0.0 0 0 10 1245 hg19 6 41306374.0 15 93563945.0 0 10 UNEVALUABLE UNEVALUABLE
659_eEE CD2AP CDC42BPB chr6 47582003 chr14 103027037 BND CALL_659_eEE_18 FP call 0.0001 0 0 219 23 hg19 6 47549739.0 14 103493374.0 0 23 EVALUABLE BAM_REFUTED
659_eEE TBC1D32 intergenic(TBC1D32,GJA1) chr6 121304775 chr6 121355685 BND CALL_659_eEE_19 FP call 0.0459 0 0 756 0 hg19 6 121625921.0 6 121676831.0 0 0 UNEVALUABLE UNEVALUABLE
659_eEE intergenic(ENPP1,CCN2) MYB chr6 131926889 chr6 135205702 BND CALL_659_eEE_20 FP call 0.0 0 0 11 4296 hg19 6 132248029.0 6 135526840.0 0 11 UNEVALUABLE UNEVALUABLE
659_eEE intergenic(HYCC1,KLHL7) ENSG00000282218 chr7 23086301 chr6 117325960 BND CALL_659_eEE_21 FP call 0.0 0 0 23 5771 hg19 7 23125920.0 6 117647123.0 0 23 EVALUABLE BAM_REFUTED
659_eEE SAMD12 intergenic(EXT1,SAMD12) chr8 118379567 chr8 118172897 BND CALL_659_eEE_22 FP call 0.0 0 0 1431 0 hg19 8 119391806.0 8 119185136.0 0 0 UNEVALUABLE UNEVALUABLE
659_eEE intergenic(LINGO2,ACO1) NRG1 chr9 30696586 chr8 32640246 BND CALL_659_eEE_23 FP call 0.0 0 0 1 11 hg19 9 30696584.0 8 32497765.0 0 1 UNEVALUABLE UNEVALUABLE
659_eEE intergenic(SLC28A3,NTRK2) NTRK3 chr9 84640587 chr15 87941496 BND CALL_659_eEE_24 FP call 0.0 0 0 1 11 hg19 9 87255502.0 15 88484727.0 0 1 UNEVALUABLE UNEVALUABLE
659_eEE TET1 intergenic(TET1,CCAR1) chr10 68694061 chr10 68694628 BND CALL_659_eEE_25 FP call 0.0 0 0 0 2 hg19 10 70453818.0 10 70454385.0 0 0 UNEVALUABLE UNEVALUABLE
659_eEE MACROH2A2 HLA-DRB5 chr10 70083471 chr6 32519404 BND CALL_659_eEE_26 FP call 0.0 0 0 0 429 hg19 10 71843227.0 6 32487181.0 0 0 UNEVALUABLE UNEVALUABLE
659_eEE NUP98 NRG1 chr11 3720976 chr8 32640247 BND CALL_659_eEE_27 FP call 0.0 0 0 233 11 hg19 11 3742206.0 8 32497766.0 0 11 UNEVALUABLE UNEVALUABLE
659_eEE RELA intergenic(CHORDC1,FAT3) chr11 65662375 chr11 90241578 DEL CALL_659_eEE_28 FP call 0.0 0 0 1866 0 hg19 11 65429846.0 11 89974746.0 0 0 UNEVALUABLE UNEVALUABLE
659_eEE YAP1 intergenic(YAP1,BIRC3) chr11 102233374 chr11 102233516 BND CALL_659_eEE_29 FP call 0.0 3 0 5 9 hg19 11 102104105.0 11 102104247.0 3 5 UNEVALUABLE UNEVALUABLE
659_eEE MAB21L1 TBP chr13 35476375 chr6 170562053 BND CALL_659_eEE_30 FP call 0.0659 0 0 1843 2478 hg19 13 36050512.0 6 170871141.0 0 1843 EVALUABLE BAM_REFUTED
659_eEE FARP1 ACRV1 chr13 98376696 chr11 125676932 BND CALL_659_eEE_31 FP call 0.0001 0 0 4 327 hg19 13 99028950.0 11 125546827.0 0 4 UNEVALUABLE UNEVALUABLE
659_eEE PIAS1 NRG1 chr15 68114060 chr8 32640246 BND CALL_659_eEE_32 FP call 0.0 0 0 0 11 hg19 15 68406398.0 8 32497765.0 0 0 UNEVALUABLE UNEVALUABLE
659_eEE RBFOX1 NRG1 chr16 7410831 chr8 32640247 BND CALL_659_eEE_33 FP call 0.0 0 0 8 11 hg19 16 7460832.0 8 32497766.0 0 8 UNEVALUABLE UNEVALUABLE
659_eEE PLCG2 CNOT1 chr16 81854604 chr16 58577957 BND CALL_659_eEE_34 FP call 0.0 0 0 1189 37 hg19 16 81888209.0 16 58611861.0 0 37 EVALUABLE BAM_REFUTED
659_eEE SPNS2 IKZF3 chr17 4503918 chr17 39765493 BND CALL_659_eEE_35 FP call 0.0 0 0 0 722 hg19 17 4407213.0 17 37921746.0 0 0 UNEVALUABLE UNEVALUABLE
659_eEE MYH4 intergenic(PCDH7,ARAP2) chr17 10456531 chr4 35937633 BND CALL_659_eEE_36 FP call 0.0 0 0 386 5 hg19 17 10359848.0 4 35939255.0 0 5 UNEVALUABLE UNEVALUABLE
659_eEE VEZF1 intergenic(MEI4,IRAK1BP1) chr17 57979244 chr6 78249879 BND CALL_659_eEE_37 FP call 0.0009 0 0 1426 14 hg19 17 56056605.0 6 78959596.0 0 14 UNEVALUABLE UNEVALUABLE
659_eEE RNMT intergenic(MEX3C,DCC) chr18 13741624 chr18 51829618 BND CALL_659_eEE_38 FP call 0.0 0 0 464 0 hg19 18 13741623.0 18 49355988.0 0 0 UNEVALUABLE UNEVALUABLE
659_eEE intergenic(ZNF429,ZNF100) TGFBR1 chr19 21698115 chr9 99151453 BND CALL_659_eEE_39 FP call 0.0 0 0 3 2 hg19 19 21880917.0 9 101913735.0 0 2 UNEVALUABLE UNEVALUABLE
659_eEE KIR2DS4 KIR3DL2 chr19 54835225 chr19 54851245 DEL CALL_659_eEE_40 FP call 0.0007 0 0 0 0 hg19 19 55346680.0 19 55362700.0 0 0 UNEVALUABLE UNEVALUABLE
659_eEE ZNF587B DEUP1 chr19 57841423 chr11 93412741 BND CALL_659_eEE_41 FP call 0.0 0 0 4414 6 hg19 19 58352791.0 11 93145907.0 0 6 UNEVALUABLE UNEVALUABLE
659_eEE CLCN5 NRG1 chrX 50007474 chr8 32640246 BND CALL_659_eEE_42 FP call 0.0 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_eEE RB1CC1 PARPBP chr8 52671080 chr12 102196198 TRANSLOCATION TRUTH_659_eEE_43 TRUTH truth 15.0 0 0 0 806 hg19 8 53583640.0 12 102589976.0 0 0 UNEVALUABLE UNEVALUABLE
659_eEE intergenic(DIPK2B,KRBOX4) FAM133A chrX 46183151 chrX 93710112 INVERSION TRUTH_659_eEE_44 TRUTH truth 11.0 0 0 0 940 hg19 X 46042586.0 X 92965111.0 0 0 UNEVALUABLE UNEVALUABLE
659_eEE LMBRD2 CPLANE1 chr5 36122910 chr5 37147411 DELETION TRUTH_659_eEE_45 TRUTH truth 8.0 0 0 394 1 hg19 5 36123012.0 5 37147513.0 0 1 UNEVALUABLE UNEVALUABLE
659_eEE SEMA3A RNF111 chr7 84143873 chr15 58893890 TRANSLOCATION TRUTH_659_eEE_46 TRUTH truth 9.0 0 0 12 839 hg19 7 83773189.0 15 59186089.0 0 12 UNEVALUABLE UNEVALUABLE
659_eEE ZNF827 intergenic(PARP8,ISL1) chr4 145885687 chr5 50872806 TRANSLOCATION TRUTH_659_eEE_47 TRUTH truth 8.0 0 0 2840 0 hg19 4 146806839.0 5 50168640.0 0 0 UNEVALUABLE UNEVALUABLE
659_eEE CFAP210 ENSG00000285854 chr2 169674622 chr12 21616444 TRANSLOCATION TRUTH_659_eEE_48 TRUTH truth 10.0 0 0 1133 8 hg19 2 170531132.0 12 21769378.0 0 8 UNEVALUABLE UNEVALUABLE
659_eEE NETO2 LONP2 chr16 47086231 chr16 48297652 INVERSION TRUTH_659_eEE_49 TRUTH truth 10.0 0 0 213 4 hg19 16 47120142.0 16 48331563.0 0 4 UNEVALUABLE UNEVALUABLE
659_eEE COL9A1 intergenic(HUNK,MIS18A) chr6 70234557 chr21 32223005 TRANSLOCATION TRUTH_659_eEE_50 TRUTH truth 12.0 0 0 1222 0 hg19 6 70944260.0 21 33595317.0 0 0 UNEVALUABLE UNEVALUABLE
659_eEE intergenic(LRRC38,PDPN) DNAI3 chr1 13519420 chr1 85108099 INVERSION TRUTH_659_eEE_51 TRUTH truth 9.0 0 0 1 707 hg19 1 13845915.0 1 85573782.0 0 1 UNEVALUABLE UNEVALUABLE
659_eEE intergenic(STIM2,PCDH7) AKAP6 chr4 30563314 chr14 32823521 TRANSLOCATION TRUTH_659_eEE_52 TRUTH truth 17.0 0 0 0 2881 hg19 4 30564936.0 14 33292727.0 0 0 UNEVALUABLE UNEVALUABLE
659_eEE SLC35D1 ENSG00000288637 chr1 67050451 chr4 153402163 TRANSLOCATION TRUTH_659_eEE_53 TRUTH truth 11.0 0 0 335 0 hg19 1 67516134.0 4 154323315.0 0 0 UNEVALUABLE UNEVALUABLE
659_eEE intergenic(TACR3,CXXC4) TRAPPC8 chr4 104333856 chr18 31855761 TRANSLOCATION TRUTH_659_eEE_54 TRUTH truth 11.0 0 0 0 699 hg19 4 105255013.0 18 29435724.0 0 0 UNEVALUABLE UNEVALUABLE
659_eEE CHD1 intergenic(ATP10A,GABRB3) chr5 98896378 chr15 26216510 TRANSLOCATION TRUTH_659_eEE_55 TRUTH truth 12.0 0 0 567 2 hg19 5 98232082.0 15 26461657.0 0 2 UNEVALUABLE UNEVALUABLE
659_eTs SNTG2 APOB chr2 1290260 chr2 21012140 BND CALL_659_eTs_0 TP call 0.8303 0 0 5 2753 hg19 2.0 1294032.0 2.0 21235012.0 0 5 UNEVALUABLE UNEVALUABLE
659_eTs PLCL2 UBE2E1 chr3 17010835 chr3 23837650 BND CALL_659_eTs_1 TP call 0.996 0 0 1894 1 hg19 3.0 17052327.0 3.0 23879141.0 0 1 UNEVALUABLE UNEVALUABLE
659_eTs RARB PLCL2 chr3 25488905 chr3 17011108 BND CALL_659_eTs_2 TP_DUP call 0.9995 0 0 2 1928 hg19 3.0 25530396.0 3.0 17052600.0 0 2 UNEVALUABLE UNEVALUABLE
659_eTs IL17RD PDE12 chr3 57143859 chr3 57559989 DUP CALL_659_eTs_3 TP call 0.9938 0 0 2 2108 hg19 3.0 57177887.0 3.0 57545716.0 0 2 UNEVALUABLE UNEVALUABLE
659_eTs HLA-C HLA-B chr6 31270099 chr6 31355316 DEL CALL_659_eTs_4 FP call 0.0 1 0 6814 6981 hg19 6.0 31237876.0 6.0 31323093.0 1 6814 EVALUABLE BAM_AMBIGUOUS
659_eTs ENPP3 PNRC1 chr6 131674931 chr6 89082503 BND CALL_659_eTs_5 FP call 0.9738 0 0 317 4 hg19 6.0 131996071.0 6.0 89792222.0 0 4 UNEVALUABLE UNEVALUABLE
659_eTs RBPMS ATF4 chr8 30492932 chr22 39522378 BND CALL_659_eTs_6 TP call 0.9987 0 0 7 2669 hg19 8.0 30350449.0 22.0 39918383.0 0 7 UNEVALUABLE UNEVALUABLE
659_eTs MUC6 intergenic(.,.) chr11 1017420 chrUn_JTFH01000899v1_decoy 410 BND CALL_659_eTs_7 FP call 0.0002 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_eTs WDR90 intergenic(RHBDL1,STUB1) chr16 666250 chr16 678560 BND CALL_659_eTs_8 FP call 0.0029 0 0 4607 997 hg19 16.0 716250.0 16.0 728560.0 0 997 EVALUABLE BAM_REFUTED
659_eTs ZSCAN10 ENSG00000285329 chr16 3091825 chr16 3477178 DEL CALL_659_eTs_9 TP call 0.9969 0 0 2337 35 hg19 16.0 3141826.0 16.0 3527178.0 0 35 EVALUABLE BAM_REFUTED
659_eTs ETV4 DDX5 chr17 43539618 chr17 64503991 DEL CALL_659_eTs_10 TP_DUP call 0.5446 0 0 2 2172 hg19 17.0 41616986.0 17.0 62500109.0 0 2 UNEVALUABLE UNEVALUABLE
659_eTs ATF4 intergenic(ZNF641,ANP32D) chr22 39522371 chr12 48375747 BND CALL_659_eTs_11 TP_DUP call 0.9911 0 0 2690 5 hg19 22.0 39918376.0 12.0 48769530.0 0 5 UNEVALUABLE UNEVALUABLE
659_eTs intergenic(.,.) MUC3A chrUn_JTFH01000054v1_decoy 3153 chr7 100952790 BND CALL_659_eTs_12 FP call 0.0063 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_eTs SNTG2 APOB chr2 1290259 chr2 21012139 INVERSION TRUTH_659_eTs_13 TRUTH truth 38.0 0 0 5 2757 hg19 2.0 1294031.0 2.0 21235011.0 0 5 UNEVALUABLE UNEVALUABLE
659_eTs MYT1L APOB chr2 2175850 chr2 21012241 DUPLICATION TRUTH_659_eTs_14 TRUTH truth 22.0 0 0 5 2462 hg19 2.0 2179622.0 2.0 21235113.0 0 5 UNEVALUABLE UNEVALUABLE
659_eTs PLCL2 UBE2E1 chr3 17010834 chr3 23837649 INVERSION TRUTH_659_eTs_15 TRUTH truth 73.0 0 0 1892 1 hg19 3.0 17052326.0 3.0 23879140.0 0 1 UNEVALUABLE UNEVALUABLE
659_eTs PLCL2 RARB chr3 17011104 chr3 25488905 INVERSION TRUTH_659_eTs_16 TRUTH truth 34.0 0 0 1926 2 hg19 3.0 17052596.0 3.0 25530396.0 0 2 UNEVALUABLE UNEVALUABLE
659_eTs IL17RD PDE12 chr3 57143858 chr3 57559988 DUPLICATION TRUTH_659_eTs_17 TRUTH truth 48.0 0 0 2 2107 hg19 3.0 57177886.0 3.0 57545715.0 0 2 UNEVALUABLE UNEVALUABLE
659_eTs RBPMS ATF4 chr8 30492930 chr22 39522377 TRANSLOCATION TRUTH_659_eTs_18 TRUTH truth 106.0 0 0 7 2669 hg19 8.0 30350447.0 22.0 39918382.0 0 7 UNEVALUABLE UNEVALUABLE
659_eTs intergenic(ZNF641,ANP32D) ATF4 chr12 48375746 chr22 39522370 TRANSLOCATION TRUTH_659_eTs_19 TRUTH truth 107.0 0 0 5 2695 hg19 12.0 48769529.0 22.0 39918375.0 0 5 UNEVALUABLE UNEVALUABLE
659_eTs ZSCAN10 ENSG00000285329 chr16 3091824 chr16 3477177 DELETION TRUTH_659_eTs_20 TRUTH truth 117.0 0 0 2337 35 hg19 16.0 3141825.0 16.0 3527177.0 0 35 EVALUABLE BAM_REFUTED
659_eTs ETV4 DDX5 chr17 43539617 chr17 64503990 DELETION TRUTH_659_eTs_21 TRUTH truth 105.0 0 0 2 2173 hg19 17.0 41616985.0 17.0 62500108.0 0 2 UNEVALUABLE UNEVALUABLE
659_ebP HMCN1 CACNA1C chr1 186095460 chr12 2206598 BND CALL_659_ebP_0 TP call 0.986 0 0 982 0 hg19 1 186064592.0 12 2315764.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP TCF19 intergenic(ECI2,CDYL) chr6 31161845 chr6 4154165 BND CALL_659_ebP_1 TP_DUP call 0.1525 0 0 2572 0 hg19 6 31129622.0 6 4154399.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP PITPNM1 CEP170B chr11 67499724 chr14 104890013 BND CALL_659_ebP_2 FP call 0.0003 0 0 1172 1089 hg19 11 67267195.0 14 105356350.0 0 1089 EVALUABLE BAM_REFUTED
659_ebP intergenic(TENM4,FAM181B) MSANTD2 chr11 82322136 chr11 124800145 DUP CALL_659_ebP_3 TP call 0.9903 0 0 0 3081 hg19 11 82033178.0 11 124670041.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP ERC1 HPD chr12 1422013 chr12 121854778 BND CALL_659_ebP_4 TP call 0.9996 0 0 2 196 hg19 12 1531179.0 12 122292684.0 0 2 UNEVALUABLE UNEVALUABLE
659_ebP ENSG00000290146 intergenic(MVK,FAM222A) chr12 6977380 chr12 109693691 BND CALL_659_ebP_5 TP call 0.9643 0 0 1785 0 hg19 12 7086542.0 12 110131496.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP C1S intergenic(MSRB3,HMGA2) chr12 7018324 chr12 65732544 DEL CALL_659_ebP_6 TP call 0.7749 0 0 818 0 hg19 12 7125628.0 12 66126324.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP BICD1 CCT2 chr12 32230072 chr12 69597702 BND CALL_659_ebP_7 FP call 0.0004 0 0 0 1240 hg19 12 32383006.0 12 69991482.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP HDAC7 WSCD2 chr12 47795694 chr12 108190791 BND CALL_659_ebP_8 TP call 0.9563 0 0 2290 2 hg19 12 48189477.0 12 108584568.0 0 2 UNEVALUABLE UNEVALUABLE
659_ebP HDAC7 intergenic(ASCL4,WSCD2) chr12 47795997 chr12 108122386 DEL CALL_659_ebP_9 FP call 0.0016 0 0 1812 0 hg19 12 48189780.0 12 108516163.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP KRT85 KLHL25 chr12 52367235 chr15 85788318 BND CALL_659_ebP_10 FP call 0.0055 0 0 2788 2 hg19 12 52761019.0 15 86331549.0 0 2 UNEVALUABLE UNEVALUABLE
659_ebP KRT82 intergenic(MSRB3,HMGA2) chr12 52403870 chr12 65597130 DUP CALL_659_ebP_11 FP call 0.0397 0 0 620 1 hg19 12 52797654.0 12 65990910.0 0 1 UNEVALUABLE UNEVALUABLE
659_ebP NAB2 intergenic(TMTC2,SLC6A15) chr12 57094200 chr12 83814001 BND CALL_659_ebP_12 FP call 0.9959 0 0 1179 0 hg19 12 57487983.0 12 84207780.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP TSPAN31 intergenic(SUDS3,SRRM4) chr12 57745753 chr12 118599260 DEL CALL_659_ebP_13 FP call 0.0002 0 0 1679 0 hg19 12 58139536.0 12 119037065.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP MARCHF9 WDR7 chr12 57755637 chr18 57022879 BND CALL_659_ebP_14 FP call 0.0324 0 0 1252 0 hg19 12 58149420.0 18 54690110.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP AVIL intergenic(KNTC1,HCAR2) chr12 57807692 chr12 122630916 DEL CALL_659_ebP_15 FP call 0.7623 0 0 2553 10 hg19 12 58201475.0 12 123115463.0 0 10 UNEVALUABLE UNEVALUABLE
659_ebP intergenic(HMGA2,LLPH) BEST3 chr12 66071355 chr12 69693731 DEL CALL_659_ebP_16 FP call 0.0047 0 0 2 841 hg19 12 66465135.0 12 70087511.0 0 2 UNEVALUABLE UNEVALUABLE
659_ebP GRIP1 ATP1A4 chr12 66366723 chr1 160171748 BND CALL_659_ebP_17 TP_DUP call 0.9998 0 0 2 1406 hg19 12 66760503.0 1 160141538.0 0 2 UNEVALUABLE UNEVALUABLE
659_ebP GRIP1 intergenic(WASH6P,.) chr12 66377051 chrX 156030352 BND CALL_659_ebP_18 FP call 0.0 0 0 458 2 hg19 12 66770831.0 X 155260017.0 0 2 UNEVALUABLE UNEVALUABLE
659_ebP CAND1 FOXN4 chr12 67312725 chr12 109303738 DUP CALL_659_ebP_19 FP call 0.1449 0 0 523 2 hg19 12 67706505.0 12 109741543.0 0 2 UNEVALUABLE UNEVALUABLE
659_ebP intergenic(TRHDE,ATXN7L3B) NUAK1 chr12 73999267 chr12 106064305 DEL CALL_659_ebP_20 FP call 0.1589 0 0 0 2 hg19 12 74393047.0 12 106458083.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP intergenic(TRHDE,ATXN7L3B) PIAS2 chr12 74520912 chr18 46812509 BND CALL_659_ebP_21 FP call 0.0076 0 0 0 376 hg19 12 74914692.0 18 44392472.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP intergenic(GLIPR1L2,GLIPR1) FRS2 chr12 75457562 chr12 69575360 BND CALL_659_ebP_22 FP call 0.0131 0 0 2 891 hg19 12 75851342.0 12 69969140.0 0 2 UNEVALUABLE UNEVALUABLE
659_ebP STAB2 intergenic(FOXN4,MYO1H) chr12 103622099 chr12 109337936 DEL CALL_659_ebP_23 TP call 0.9916 0 0 481 5 hg19 12 104015877.0 12 109775741.0 0 5 UNEVALUABLE UNEVALUABLE
659_ebP NUAK1 TCHP chr12 106067005 chr12 109943963 DEL CALL_659_ebP_24 TP call 0.1297 0 0 2363 0 hg19 12 106460783.0 12 110381768.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP SPPL3 intergenic(CEP83,TMCC3) chr12 120767578 chr12 94530007 BND CALL_659_ebP_25 TP_DUP call 0.9996 0 0 847 3 hg19 12 121205381.0 12 94923783.0 0 3 UNEVALUABLE UNEVALUABLE
659_ebP EDC3 C12orf42 chr15 74675001 chr12 103322773 BND CALL_659_ebP_26 TP_DUP call 0.9992 0 0 803 0 hg19 15 74967342.0 12 103716551.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP intergenic(AGBL1,NTRK3) ULK3 chr15 87105715 chr15 74840309 BND CALL_659_ebP_27 TP_DUP call 0.9982 0 0 0 1765 hg19 15 87648946.0 15 75132650.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP SEMA4B TCHP chr15 90164962 chr12 109903980 BND CALL_659_ebP_28 FP call 0.0 0 0 5 760 hg19 15 90708194.0 12 110341785.0 0 5 UNEVALUABLE UNEVALUABLE
659_ebP SV2B intergenic(FAM181B,PRCP) chr15 91258491 chr11 82808774 BND CALL_659_ebP_29 TP_DUP call 0.8994 0 0 1120 2 hg19 15 91801721.0 11 82519816.0 0 2 UNEVALUABLE UNEVALUABLE
659_ebP intergenic(SYT4,SETBP1) SLC14A2 chr18 44647551 chr18 45639746 DEL CALL_659_ebP_30 FP call 0.9971 0 0 0 616 hg19 18 42227516.0 18 43219711.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP SETBP1 LOXHD1 chr18 44810610 chr18 46569583 BND CALL_659_ebP_31 TP call 0.9448 0 0 0 691 hg19 18 42390575.0 18 44149546.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP SETBP1 ALPK2 chr18 44951314 chr18 58510185 DEL CALL_659_ebP_32 FP call 0.7758 0 0 8672 0 hg19 18 42531279.0 18 56177417.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP intergenic(HAUS1,C18orf25) ATP5F1A chr18 46146032 chr18 46087191 BND CALL_659_ebP_33 FP call 0.043 0 0 16 1806 hg19 18 43725998.0 18 43667157.0 0 16 UNEVALUABLE UNEVALUABLE
659_ebP KATNAL2 GRIP1 chr18 47077406 chr12 66416880 BND CALL_659_ebP_34 FP call 0.8938 0 0 325 0 hg19 18 44603777.0 12 66810660.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP intergenic(SKOR2,SMAD2) BEST3 chr18 47625228 chr12 69643761 BND CALL_659_ebP_35 FP call 0.0002 0 0 0 0 hg19 18 45151599.0 12 70037541.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP intergenic(TCF4,TXNL1) NEDD4L chr18 55958810 chr18 58329070 DEL CALL_659_ebP_36 TP call 0.0004 0 0 0 791 hg19 18 53626041.0 18 55996302.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP intergenic(TCF4,TXNL1) ALPK2 chr18 56047506 chr18 58481902 BND CALL_659_ebP_37 TP call 0.8401 0 0 0 646 hg19 18 53714737.0 18 56149134.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP WDR7 CHST11 chr18 57020776 chr12 104669981 BND CALL_659_ebP_38 FP call 0.9126 0 0 604 0 hg19 18 54688007.0 12 105063759.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP ATP8B1 NT5DC3 chr18 57706385 chr12 103778011 BND CALL_659_ebP_39 TP_DUP call 0.0676 0 0 496 1111 hg19 18 55373617.0 12 104171789.0 0 496 EVALUABLE BAM_REFUTED
659_ebP SLC24A3 intergenic(GRXCR1,KCTD8) chr20 19665888 chr4 44133867 BND CALL_659_ebP_40 FP call 0.0 0 0 370 2 hg19 20 19646532.0 4 44135884.0 0 2 UNEVALUABLE UNEVALUABLE
659_ebP intergenic(WASH6P,.) ETV6 chrX 156030352 chr12 11779589 BND CALL_659_ebP_41 FP call 0.0012 0 0 2 0 hg19 X 155260017.0 12 11932523.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP C12orf42 EDC3 chr12 103322772 chr15 74675000 TRANSLOCATION TRUTH_659_ebP_42 TRUTH truth 90.0 0 0 0 803 hg19 12 103716550.0 15 74967341.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP HDAC7 WSCD2 chr12 47795692 chr12 108190789 INVERSION TRUTH_659_ebP_43 TRUTH truth 122.0 0 0 2281 2 hg19 12 48189475.0 12 108584566.0 0 2 UNEVALUABLE UNEVALUABLE
659_ebP SLC41A2 intergenic(SUDS3,SRRM4) chr12 104866509 chr12 118547434 INVERSION TRUTH_659_ebP_44 TRUTH truth 24.0 0 0 1148 1 hg19 12 105260287.0 12 118985239.0 0 1 UNEVALUABLE UNEVALUABLE
659_ebP STAB2 intergenic(FOXN4,MYO1H) chr12 103622098 chr12 109337935 DELETION TRUTH_659_ebP_45 TRUTH truth 128.0 0 0 481 5 hg19 12 104015876.0 12 109775740.0 0 5 UNEVALUABLE UNEVALUABLE
659_ebP intergenic(TCF4,TXNL1) NEDD4L chr18 55958809 chr18 58329069 DELETION TRUTH_659_ebP_46 TRUTH truth 121.0 0 0 0 791 hg19 18 53626040.0 18 55996301.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP NT5DC3 ATP8B1 chr12 103778010 chr18 57706384 TRANSLOCATION TRUTH_659_ebP_47 TRUTH truth 28.0 0 0 1111 496 hg19 12 104171788.0 18 55373616.0 0 496 EVALUABLE BAM_REFUTED
659_ebP C1S intergenic(MSRB3,HMGA2) chr12 7018323 chr12 65732543 DELETION TRUTH_659_ebP_48 TRUTH truth 479.0 0 0 818 0 hg19 12 7125627.0 12 66126323.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP ERC1 HPD chr12 1422012 chr12 121854777 INVERSION TRUTH_659_ebP_49 TRUTH truth 131.0 0 0 2 196 hg19 12 1531178.0 12 122292683.0 0 2 UNEVALUABLE UNEVALUABLE
659_ebP intergenic(ECI2,CDYL) TCF19 chr6 4154162 chr6 31161844 INVERSION TRUTH_659_ebP_50 TRUTH truth 91.0 0 0 0 2569 hg19 6 4154396.0 6 31129621.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP intergenic(TCF4,TXNL1) ALPK2 chr18 56047504 chr18 58481900 INVERSION TRUTH_659_ebP_51 TRUTH truth 58.0 0 0 0 646 hg19 18 53714735.0 18 56149132.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP EMG1 intergenic(MVK,FAM222A) chr12 6977378 chr12 109693689 INVERSION TRUTH_659_ebP_52 TRUTH truth 449.0 0 0 1785 0 hg19 12 7086540.0 12 110131494.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP intergenic(FAM181B,PRCP) SV2B chr11 82808773 chr15 91258490 TRANSLOCATION TRUTH_659_ebP_53 TRUTH truth 318.0 0 0 2 1120 hg19 11 82519815.0 15 91801720.0 0 2 UNEVALUABLE UNEVALUABLE
659_ebP SETBP1 LOXHD1 chr18 44810609 chr18 46569582 INVERSION TRUTH_659_ebP_54 TRUTH truth 53.0 0 0 0 691 hg19 18 42390574.0 18 44149545.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP ULK3 intergenic(AGBL1,NTRK3) chr15 74840307 chr15 87105715 INVERSION TRUTH_659_ebP_55 TRUTH truth 229.0 0 0 1768 0 hg19 15 75132648.0 15 87648946.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP ATP1A4 GRIP1 chr1 160171747 chr12 66366722 TRANSLOCATION TRUTH_659_ebP_56 TRUTH truth 157.0 0 0 1406 2 hg19 1 160141537.0 12 66760502.0 0 2 UNEVALUABLE UNEVALUABLE
659_ebP intergenic(TENM4,FAM181B) MSANTD2 chr11 82322135 chr11 124800144 DUPLICATION TRUTH_659_ebP_57 TRUTH truth 76.0 0 0 0 3075 hg19 11 82033177.0 11 124670040.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP HMCN1 CACNA1C chr1 186095459 chr12 2206597 TRANSLOCATION TRUTH_659_ebP_58 TRUTH truth 98.0 0 0 982 0 hg19 1 186064591.0 12 2315763.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP NUAK1 GIT2 chr12 106067004 chr12 109943962 DELETION TRUTH_659_ebP_59 TRUTH truth 25.0 0 0 2359 0 hg19 12 106460782.0 12 110381767.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebP intergenic(CEP83,TMCC3) SPPL3 chr12 94530004 chr12 120767579 INVERSION TRUTH_659_ebP_60 TRUTH truth 247.0 0 0 3 847 hg19 12 94923780.0 12 121205382.0 0 3 UNEVALUABLE UNEVALUABLE
659_eci ENSG00000289697 CFHR1 chr1 196743349 chr1 196828231 DUP CALL_659_eci_0 FP call 0.0022 2 0 1298 94 hg19 1.0 196712479.0 1.0 196797361.0 2 94 EVALUABLE BAM_AMBIGUOUS
659_eci CREB1 EWSR1 chr2 207561139 chr22 29288630 BND CALL_659_eci_1 TP call 0.0054 0 0 255 8361 hg19 2.0 208425863.0 22.0 29684619.0 0 255 EVALUABLE BAM_REFUTED
659_eci HLA-E HLA-C chr6 30492210 chr6 31269560 BND CALL_659_eci_2 FP call 0.0 0 0 823 7096 hg19 6.0 30459987.0 6.0 31237337.0 0 823 EVALUABLE BAM_REFUTED
659_eci HLA-C intergenic(HLA-G,HLA-A) chr6 31270457 chr6 29896621 BND CALL_659_eci_3 FP call 0.0 0 0 4722 2 hg19 6.0 31238234.0 6.0 29864398.0 0 2 UNEVALUABLE UNEVALUABLE
659_eci HLA-C HLA-B chr6 31270867 chr6 31356239 DUP CALL_659_eci_4 FP call 0.0 66 0 6382 8744 hg19 6.0 31238644.0 6.0 31324016.0 66 6382 EVALUABLE BAM_CONFIRMED
659_eci HLA-C HLA-G chr6 31271153 chr6 29828743 BND CALL_659_eci_5 FP call 0.0 0 0 7015 2178 hg19 6.0 31238930.0 6.0 29796520.0 0 2178 EVALUABLE BAM_REFUTED
659_eci HLA-C HLA-F chr6 31271605 chr6 29723767 BND CALL_659_eci_6 FP call 0.0 0 0 5924 2089 hg19 6.0 31239382.0 6.0 29691544.0 0 2089 EVALUABLE BAM_REFUTED
659_eci MUC19 intergenic(.,.) chr12 40514424 chrUn_JTFH01000061v1_decoy 3391 BND CALL_659_eci_7 FP call 0.0006 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_eci intergenic(CEP192,LDLRAD4) WDR89 chr18 13152414 chr14 63599457 BND CALL_659_eci_8 FP call 0.0064 2 0 345 2549 hg19 18.0 13152413.0 14.0 64066175.0 2 345 EVALUABLE BAM_AMBIGUOUS
659_eci CREB1 EWSR1 chr2 207561138 chr22 29288629 TRANSLOCATION TRUTH_659_eci_9 TRUTH truth 247.0 0 0 255 8366 hg19 2.0 208425862.0 22.0 29684618.0 0 255 EVALUABLE BAM_REFUTED
659_egZ HLA-G HLA-B chr6 29830120 chr6 31355019 BND CALL_659_egZ_0 FP call 0.0029 0 0 1629 5878 hg19 6 29797897.0 6.0 31322796.0 0 1629 EVALUABLE BAM_REFUTED
659_egZ HLA-B intergenic(HLA-G,HLA-A) chr6 31355680 chr6 29896507 BND CALL_659_egZ_1 FP call 0.0 0 0 6436 5 hg19 6 31323457.0 6.0 29864284.0 0 5 UNEVALUABLE UNEVALUABLE
659_egZ HLA-B HLA-A chr6 31356513 chr6 29943178 BND CALL_659_egZ_2 FP call 0.0001 0 0 5808 5892 hg19 6 31324290.0 6.0 29910955.0 0 5808 EVALUABLE BAM_REFUTED
659_egZ UNC5D FGFR1 chr8 35398229 chr8 38430145 DUP CALL_659_egZ_3 FP call 0.5327 0 0 6 2540 hg19 8 35255747.0 8.0 38287663.0 0 6 UNEVALUABLE UNEVALUABLE
659_egZ intergenic(CRISPLD1,HNF4G) LETM2 chr8 75211426 chr8 38392735 BND CALL_659_egZ_4 FP call 0.0205 0 0 4 1260 hg19 8 76123661.0 8.0 38250253.0 0 4 UNEVALUABLE UNEVALUABLE
659_egZ DENND3 intergenic(.,.) chr8 141168225 chr8_KI270820v1_alt 13977 BND CALL_659_egZ_5 FP call 0.0063 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_egZ DMBT1 intergenic(BUB3,GPR26) chr10 122630353 chr10 123469745 DUP CALL_659_egZ_6 FP call 0.0342 0 0 1598 7 hg19 10 124389869.0 10.0 125229261.0 0 7 UNEVALUABLE UNEVALUABLE
659_egZ FAM168A FGFR1 chr11 73453024 chr8 38413762 BND CALL_659_egZ_7 FP call 0.0181 0 0 6 7812 hg19 11 73164069.0 8.0 38271280.0 0 6 UNEVALUABLE UNEVALUABLE
659_egZ NPAS3 PRSS12 chr14 33519240 chr4 118294945 BND CALL_659_egZ_8 TP_DUP call 0.9808 0 0 6 724 hg19 14 33988446.0 4.0 119216100.0 0 6 UNEVALUABLE UNEVALUABLE
659_egZ TBC1D2B ADAMTS7 chr15 77984577 chr15 78768248 BND CALL_659_egZ_9 FP call 0.0003 27 0 604 700 hg19 15 78276919.0 15.0 79060590.0 27 604 EVALUABLE BAM_CONFIRMED
659_egZ NLGN2 intergenic(MAP2K4,MYOCD) chr17 7414981 chr17 12151055 DUP CALL_659_egZ_10 TP call 0.9938 0 0 1633 3 hg19 17 7318300.0 17.0 12054372.0 0 3 UNEVALUABLE UNEVALUABLE
659_egZ TP53 SSH2 chr17 7675066 chr17 29794585 DUP CALL_659_egZ_11 TP call 0.6804 0 0 4195 12 hg19 17 7578384.0 17.0 28121603.0 0 12 UNEVALUABLE UNEVALUABLE
659_egZ TP53 SLC5A10 chr17 7675085 chr17 19006203 DUP CALL_659_egZ_12 FP call 0.0001 0 0 4198 5 hg19 17 7578403.0 17.0 18909516.0 0 5 UNEVALUABLE UNEVALUABLE
659_egZ TP53 ASIC2 chr17 7687259 chr17 33882355 DUP CALL_659_egZ_13 FP call 0.5336 0 0 4 6 hg19 17 7590577.0 17.0 32209374.0 0 4 UNEVALUABLE UNEVALUABLE
659_egZ SHISA6 DNAH9 chr17 11272604 chr17 11883667 DUP CALL_659_egZ_14 TP call 0.0387 0 0 3 1070 hg19 17 11175921.0 17.0 11786984.0 0 3 UNEVALUABLE UNEVALUABLE
659_egZ MPRIP TOP3A chr17 17158749 chr17 18312570 DUP CALL_659_egZ_15 TP call 0.9935 0 0 1733 11 hg19 17 17062063.0 17.0 18215884.0 0 11 UNEVALUABLE UNEVALUABLE
659_egZ MPRIP FLII chr17 17159759 chr17 18246930 DEL CALL_659_egZ_16 FP call 0.9741 0 0 13 1730 hg19 17 17063073.0 17.0 18150244.0 0 13 UNEVALUABLE UNEVALUABLE
659_egZ MED1 MAP2K4 chr17 39444312 chr17 12020895 BND CALL_659_egZ_17 FP call 0.6592 0 0 23 524 hg19 17 37600565.0 17.0 11924212.0 0 23 EVALUABLE BAM_REFUTED
659_egZ intergenic(CHIC1,ZCCHC13) HLA-DRB1 chrX 73923953 chr6 32578854 BND CALL_659_egZ_18 FP call 0.0 0 0 2 3524 hg19 X 73143788.0 6.0 32546631.0 0 2 UNEVALUABLE UNEVALUABLE
659_egZ intergenic(.,.) HLA-DRB1 chr6_GL000251v2_alt 3923809 chr6 32589645 BND CALL_659_egZ_19 FP call 0.0033 3 0 517 1245 hg19 6 32497906.0 6.0 32557422.0 3 517 EVALUABLE BAM_CONFIRMED
659_egZ PRSS12 NPAS3 chr4 118294943 chr14 33519239 TRANSLOCATION TRUTH_659_egZ_20 TRUTH truth 41.0 0 0 724 6 hg19 4 119216098.0 14.0 33988445.0 0 6 UNEVALUABLE UNEVALUABLE
659_egZ TP53 SSH2 chr17 7675065 chr17 29794584 DUPLICATION TRUTH_659_egZ_21 TRUTH truth 272.0 0 0 4195 13 hg19 17 7578383.0 17.0 28121602.0 0 13 UNEVALUABLE UNEVALUABLE
659_egZ SHISA6 DNAH9 chr17 11272603 chr17 11883666 DUPLICATION TRUTH_659_egZ_22 TRUTH truth 65.0 0 0 3 1072 hg19 17 11175920.0 17.0 11786983.0 0 3 UNEVALUABLE UNEVALUABLE
659_egZ NLGN2 intergenic(MAP2K4,MYOCD) chr17 7414980 chr17 12151054 DUPLICATION TRUTH_659_egZ_23 TRUTH truth 56.0 0 0 1631 3 hg19 17 7318299.0 17.0 12054371.0 0 3 UNEVALUABLE UNEVALUABLE
659_egZ MPRIP TOP3A chr17 17158748 chr17 18312569 DUPLICATION TRUTH_659_egZ_24 TRUTH truth 37.0 0 0 1733 11 hg19 17 17062062.0 17.0 18215883.0 0 11 UNEVALUABLE UNEVALUABLE
659_eqd NEGR1 AR chr1 71597473 chrX 67710101 BND CALL_659_eqd_0 FP call 0.0 0 0 2 0 hg19 1 72063156.0 X 66929943.0 0 0 UNEVALUABLE UNEVALUABLE
659_eqd intergenic(ZPLD1,ALCAM) GSK3B chr3 102978091 chr3 119824179 BND CALL_659_eqd_1 FP call 0.0 0 0 0 0 hg19 3 102696935.0 3 119543026.0 0 0 UNEVALUABLE UNEVALUABLE
659_eqd PAK2 MET chr3 196795706 chr7 116772834 BND CALL_659_eqd_2 TP call 0.1182 0 0 0 6132 hg19 3 196522577.0 7 116412888.0 0 0 UNEVALUABLE UNEVALUABLE
659_eqd intergenic(MTRR,SEMA5A) AR chr5 8922639 chrX 67710101 BND CALL_659_eqd_3 FP call 0.0 0 0 0 0 hg19 5 8922751.0 X 66929943.0 0 0 UNEVALUABLE UNEVALUABLE
659_eqd intergenic(RANBP3L,SLC1A3) CPLANE1 chr5 36364483 chr5 37213576 DEL CALL_659_eqd_4 FP call 0.0049 0 0 6 536 hg19 5 36364585.0 5 37213678.0 0 6 UNEVALUABLE UNEVALUABLE
659_eqd NSD1 SLC34A1 chr5 177298462 chr5 177390032 DUP CALL_659_eqd_5 FP call 0.0 0 0 2 1943 hg19 5 176725463.0 5 176817033.0 0 2 UNEVALUABLE UNEVALUABLE
659_eqd PKHD1 EFHC1 chr6 51836449 chr6 52417340 DUP CALL_659_eqd_6 FP call 0.0003 0 0 168 2 hg19 6 51701247.0 6 52282138.0 0 2 UNEVALUABLE UNEVALUABLE
659_eqd intergenic(MMS22L,POU3F2) AR chr6 98111106 chrX 67710069 BND CALL_659_eqd_7 FP call 0.0 0 0 3 0 hg19 6 98558982.0 X 66929911.0 0 0 UNEVALUABLE UNEVALUABLE
659_eqd intergenic(SCN2B,JAML) ENSG00000285827 chr11 118177209 chr11 118481024 DEL CALL_659_eqd_8 FP call 0.0 0 0 1 4362 hg19 11 118047924.0 11 118351739.0 0 1 UNEVALUABLE UNEVALUABLE
659_eqd PRMT5 intergenic(PRMT5,HAUS4) chr14 22924706 chr14 22940059 BND CALL_659_eqd_9 FP call 0.0 0 0 1991 7 hg19 14 23393915.0 14 23409268.0 0 7 UNEVALUABLE UNEVALUABLE
659_eqd intergenic(MIS18BP1,RPL10L) AR chr14 45257698 chrX 67710101 BND CALL_659_eqd_10 FP call 0.0 0 0 2 0 hg19 14 45726901.0 X 66929943.0 0 0 UNEVALUABLE UNEVALUABLE
659_eqd EIF2S1 AR chr14 67373843 chrX 67710069 BND CALL_659_eqd_11 FP call 0.0002 0 0 7 0 hg19 14 67840560.0 X 66929911.0 0 0 UNEVALUABLE UNEVALUABLE
659_eqd intergenic(GOT2,CDH8) AR chr16 59342583 chrX 67710101 BND CALL_659_eqd_12 FP call 0.0 0 0 0 0 hg19 16 59376487.0 X 66929943.0 0 0 UNEVALUABLE UNEVALUABLE
659_eqd intergenic(MALT1,ZNF532) ZNF532 chr18 58784813 chr18 58920257 DUP CALL_659_eqd_13 TP call 0.9951 0 0 1 2993 hg19 18 56452045.0 18 56587489.0 0 1 UNEVALUABLE UNEVALUABLE
659_eqd ZNF568 AR chr19 36945211 chrX 67710101 BND CALL_659_eqd_14 FP call 0.0 0 0 4 0 hg19 19 37436113.0 X 66929943.0 0 0 UNEVALUABLE UNEVALUABLE
659_eqd AR intergenic(RGS17,OPRM1) chrX 67710101 chr6 153229193 BND CALL_659_eqd_15 FP call 0.0001 0 0 0 4 hg19 X 66929943.0 6 153550328.0 0 0 UNEVALUABLE UNEVALUABLE
659_eqd intergenic(FMR1NB,AFF2) AR chrX 148121071 chrX 67710101 BND CALL_659_eqd_16 FP call 0.0 0 0 2 0 hg19 X 147202591.0 X 66929943.0 0 0 UNEVALUABLE UNEVALUABLE
659_eqd intergenic(.,.) HLA-DQB1 HLA-DRB1*01:02:01 6265 chr6 32665001 BND CALL_659_eqd_17 FP call 0.0003 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_eqd PAK2 MET chr3 196795705 chr7 116772830 TRANSLOCATION TRUTH_659_eqd_18 TRUTH truth 114.0 0 0 0 6137 hg19 3 196522576.0 7 116412884.0 0 0 UNEVALUABLE UNEVALUABLE
659_eqd intergenic(MALT1,ZNF532) ZNF532 chr18 58784812 chr18 58920256 DUPLICATION TRUTH_659_eqd_19 TRUTH truth 110.0 0 0 1 2995 hg19 18 56452044.0 18 56587488.0 0 1 UNEVALUABLE UNEVALUABLE
659_exw HLA-A HLA-C chr6 29943545 chr6 31271003 BND CALL_659_exw_0 FP call 0.0 29 0 7728 7707 hg19 6 29911322.0 6 31238780.0 29 7707 EVALUABLE BAM_CONFIRMED
659_exw MACROH2A2 HLA-DRB1 chr10 70083435 chr6 32581566 BND CALL_659_exw_1 FP call 0.0 0 0 0 1190 hg19 10 71843191.0 6 32549343.0 0 0 UNEVALUABLE UNEVALUABLE
659_exw FLI1 EWSR1 chr11 128788483 chr22 29287527 TRANSLOCATION TRUTH_659_exw_2 TRUTH truth 195.0 0 0 18 4895 hg19 11 128658378.0 22 29683516.0 0 18 UNEVALUABLE UNEVALUABLE
659_eyD FIGN TRAF3 chr2 163652447 chr14 102906030 BND CALL_659_eyD_0 FP call 0.0 0 0 2 2078 hg19 2 164508957.0 14 103372367.0 0 2 UNEVALUABLE UNEVALUABLE
659_eyD MADD ENSG00000288534 chr11 47282900 chr11 57801449 DUP CALL_659_eyD_1 TP call 0.0218 0 0 1513 792 hg19 11 47304451.0 11 57568921.0 0 792 EVALUABLE BAM_REFUTED
659_eyD ERG TMPRSS2 chr21 38435343 chr21 41505539 DEL CALL_659_eyD_2 TP call 0.9975 0 0 0 9537 hg19 21 39807266.0 21 42877466.0 0 0 UNEVALUABLE UNEVALUABLE
659_eyD intergenic(IGSF1,STK26) MAGEC1 chrX 131723585 chrX 141907745 DUP CALL_659_eyD_3 FP call 0.0136 0 0 2 1455 hg19 X 130857613.0 X 140995531.0 0 2 UNEVALUABLE UNEVALUABLE
659_eyD MADD ENSG00000254732 chr11 47282915 chr11 57801438 DUPLICATION TRUTH_659_eyD_4 TRUTH truth 22.0 0 0 1509 776 hg19 11 47304466.0 11 57568910.0 0 776 EVALUABLE BAM_REFUTED
659_eyD ERG TMPRSS2 chr21 38435342 chr21 41505538 DELETION TRUTH_659_eyD_5 TRUTH truth 98.0 0 0 0 9539 hg19 21 39807265.0 21 42877465.0 0 0 UNEVALUABLE UNEVALUABLE
659_rd PPP2R2C MLLT3 chr4 6563063 chr9 20345975 BND CALL_659_rd_0 FP call 0.0 0 0 0 264 hg19 4 6564790.0 9 20345973.0 0 0 UNEVALUABLE UNEVALUABLE
659_rd STAT6 NAB2 chr12 57100594 chr12 57094249 BND CALL_659_rd_1 TP_DUP call 0.9998 0 0 258 1391 hg19 12 57494377.0 12 57488032.0 0 258 EVALUABLE BAM_REFUTED
659_rd NAB2 STAT6 chr12 57093322 chr12 57099366 INVERSION TRUTH_659_rd_2 TRUTH truth 451.0 0 0 5969 8256 hg19 12 57487105.0 12 57493149.0 0 5969 EVALUABLE BAM_REFUTED
659_wQ intergenic(FAM90A1,CLEC6A) H2AJ chr12 8439813 chr12 14774548 INVERSION TRUTH_659_wQ_0 TRUTH truth 27.0 0 0 0 1177 hg19 12 8592409.0 12 14927482.0 0 0 UNEVALUABLE UNEVALUABLE
659_wS HLA-C HLA-B chr6 31269272 chr6 31354533 DUP CALL_659_wS_0 FP call 0.0 110 0 8963 8008 hg19 6 31237049.0 6 31322310.0 110 8008 EVALUABLE BAM_CONFIRMED
659_wS intergenic(PRSS33,PRSS41) DPYD chr16 2788446 chr1 97719885 BND CALL_659_wS_1 FP call 0.0 0 0 2 2181 hg19 16 2838447.0 1 98185441.0 0 2 UNEVALUABLE UNEVALUABLE
659_wS BRCA1 NBR1 chr17 43124063 chr17 43176629 DEL CALL_659_wS_2 TP call 0.147 0 0 6565 2 hg19 17 41276080.0 17 41328646.0 0 2 UNEVALUABLE UNEVALUABLE
659_wS TFE3 NONO chrX 49038158 chrX 71299227 BND CALL_659_wS_3 TP call 0.5221 0 0 3774 168 hg19 X 48895683.0 X 70519077.0 0 168 EVALUABLE BAM_REFUTED
659_wS TFE3 intergenic(EFNB1,PJA1) chrX 49038214 chrX 69010196 DUP CALL_659_wS_4 TP call 0.7522 0 0 3982 0 hg19 X 48895739.0 X 68230039.0 0 0 UNEVALUABLE UNEVALUABLE
659_wS BRCA1 NBR1 chr17 43124062 chr17 43176628 DELETION TRUTH_659_wS_5 TRUTH truth 133.0 0 0 6559 2 hg19 17 41276079.0 17 41328645.0 0 2 UNEVALUABLE UNEVALUABLE
659_wS TFE3 intergenic(EFNB1,PJA1) chrX 49038281 chrX 69010212 INVERSION TRUTH_659_wS_6 TRUTH truth 116.0 0 0 4095 0 hg19 X 48895806.0 X 68230055.0 0 0 UNEVALUABLE UNEVALUABLE
659_wS TFE3 NONO chrX 49038156 chrX 71299227 INVERSION TRUTH_659_wS_7 TRUTH truth 39.0 0 0 3768 168 hg19 X 48895681.0 X 70519077.0 0 168 EVALUABLE BAM_REFUTED
659_wS ZBTB21 SIK1 chr21 41991401 chr21 43421929 DELETION TRUTH_659_wS_8 TRUTH truth 51.0 0 0 4339 1405 hg19 21 43411510.0 21 44841809.0 0 1405 EVALUABLE BAM_REFUTED
1173_CRL intergenic(KIF13B,DUSP4) NTRK2 chr8 29290199 chr9 84737722 BND CALL_1173_CRL_0 FP call 0.0 0 0 2 0 hg19 8 29147716.0 9 87352637.0 0 0 UNEVALUABLE UNEVALUABLE
1173_CRL ANKRD52 CS chr12 56252054 chr12 56274851 DUP CALL_1173_CRL_1 TP call 0.9888 0 0 1941 1287 hg19 12 56645838.0 12 56668635.0 0 1287 EVALUABLE BAM_REFUTED
1173_CRL ANKRD52 CS chr12 56252053 chr12 56274850 DUPLICATION TRUTH_1173_CRL_2 TRUTH truth 61.0 0 0 1940 1287 hg19 12 56645837.0 12 56668634.0 0 1287 EVALUABLE BAM_REFUTED
659_Jq OSBPL11 intergenic(SLITRK1,SLITRK6) chr3 125563799 chr13 85190837 BND CALL_659_Jq_0 FP call 0.0618 0 0 625 4 hg19 3 125282643.0 13 85764972.0 0 4 UNEVALUABLE UNEVALUABLE
659_Jq KCNIP4 GRIN2A chr4 21329195 chr16 9757446 BND CALL_659_Jq_1 FP call 0.0 0 0 2 2 hg19 4 21330818.0 16 9851303.0 0 2 UNEVALUABLE UNEVALUABLE
659_Jq ENSG00000282278 KIF6 chr4 54269570 chr6 39334706 BND CALL_659_Jq_2 FP call 0.0 0 0 11609 3 hg19 4 55135737.0 6 39302482.0 0 3 UNEVALUABLE UNEVALUABLE
659_Jq intergenic(HCN1,EMB) IL2RB chr5 50050346 chr22 37136345 BND CALL_659_Jq_3 FP call 0.0016 0 0 7 1086 hg19 5 49437142.0 22 37532385.0 0 7 UNEVALUABLE UNEVALUABLE
659_Jq PRKN PTK6 chr6 162259769 chr20 63532618 BND CALL_659_Jq_4 FP call 0.0013 0 0 3 1479 hg19 6 162680801.0 20 62163971.0 0 3 UNEVALUABLE UNEVALUABLE
659_Jq intergenic(FOXK1,AP5Z1) EWSR1 chr7 4773190 chr22 29290512 BND CALL_659_Jq_5 FP call 0.0 0 0 2 8642 hg19 7 4812821.0 22 29686501.0 0 2 UNEVALUABLE UNEVALUABLE
659_Jq ETV1 intergenic(TENM4,FAM181B) chr7 13932065 chr11 80336832 BND CALL_659_Jq_6 FP call 0.0 0 0 2994 10 hg19 7 13971690.0 11 80047876.0 0 10 UNEVALUABLE UNEVALUABLE
659_Jq BMPER CDC6 chr7 33912906 chr17 40289196 BND CALL_659_Jq_7 FP call 0.0 0 0 0 797 hg19 7 33952518.0 17 38445448.0 0 0 UNEVALUABLE UNEVALUABLE
659_Jq TPST1 LCK chr7 66223168 chr1 32285768 BND CALL_659_Jq_8 FP call 0.0 0 0 3 1029 hg19 7 65688155.0 1 32751369.0 0 3 UNEVALUABLE UNEVALUABLE
659_Jq intergenic(PCLO,SEMA3E) HLA-B chr7 83327245 chr6 31356799 BND CALL_659_Jq_9 FP call 0.0 0 0 0 9078 hg19 7 82956561.0 6 31324576.0 0 0 UNEVALUABLE UNEVALUABLE
659_Jq IMMP2L LCK chr7 111290736 chr1 32285936 BND CALL_659_Jq_10 FP call 0.0 0 0 1 1002 hg19 7 110930792.0 1 32751537.0 0 1 UNEVALUABLE UNEVALUABLE
659_Jq intergenic(CDK5RAP2,MEGF9) CMYA5 chr9 120592377 chr5 79745245 BND CALL_659_Jq_11 FP call 0.0018 0 0 0 768 hg19 9 123354655.0 5 79041068.0 0 0 UNEVALUABLE UNEVALUABLE
659_Jq ART1 STIM1 chr11 3661514 chr11 4023913 DUP CALL_659_Jq_12 FP call 0.6594 0 0 481 500 hg19 11 3682744.0 11 4045143.0 0 481 EVALUABLE BAM_REFUTED
659_Jq FIBP PACS1 chr11 65884411 chr11 66169815 DUP CALL_659_Jq_13 TP call 0.9469 0 0 1407 29 hg19 11 65651882.0 11 65937286.0 0 29 EVALUABLE BAM_REFUTED
659_Jq ANKRD13D ENSG00000256514 chr11 67299539 chr11 67357092 DUP CALL_659_Jq_14 TP call 0.9974 0 0 2350 2 hg19 11 67067010.0 11 67124563.0 0 2 UNEVALUABLE UNEVALUABLE
659_Jq VWA8 ENSG00000282278 chr13 41879488 chr4 54269564 BND CALL_659_Jq_15 FP call 0.0 0 0 6 11625 hg19 13 42453624.0 4 55135731.0 0 6 UNEVALUABLE UNEVALUABLE
659_Jq intergenic(SCAMP2,MPI) CHD2 chr15 74877000 chr15 92941857 DEL CALL_659_Jq_16 FP call 0.0 0 0 6 1754 hg19 15 75169341.0 15 93485087.0 0 6 UNEVALUABLE UNEVALUABLE
659_Jq IKZF3 ERBB2 chr17 39855718 chr17 39687921 BND CALL_659_Jq_17 FP call 0.0006 0 0 4 1061 hg19 17 38011971.0 17 37844174.0 0 4 UNEVALUABLE UNEVALUABLE
659_Jq TEKTIP1 ATCAY chr19 3539214 chr19 3908607 DEL CALL_659_Jq_18 FP call 0.0003 0 0 292 504 hg19 19 3539212.0 19 3908605.0 0 292 EVALUABLE BAM_REFUTED
659_Jq KCNN1 LTBP4 chr19 17989547 chr19 40608564 BND CALL_659_Jq_19 TP call 0.9986 0 0 965 1714 hg19 19 18100356.0 19 41114470.0 0 965 EVALUABLE BAM_REFUTED
659_Jq ARRDC2 MICALL1 chr19 18013794 chr22 37922382 BND CALL_659_Jq_20 TP call 0.8354 0 0 2 2257 hg19 19 18124603.0 22 38318389.0 0 2 UNEVALUABLE UNEVALUABLE
659_Jq ZNF675 CDC42EP1 chr19 23605415 chr22 37568600 BND CALL_659_Jq_21 TP call 0.8899 0 0 16 2096 hg19 19 23788217.0 22 37964607.0 0 16 UNEVALUABLE UNEVALUABLE
659_Jq PLEKHF1 intergenic(ZNF473,IZUMO2) chr19 29674306 chr19 50141567 BND CALL_659_Jq_22 TP call 0.7454 0 0 4962 4 hg19 19 30165213.0 19 50644824.0 0 4 UNEVALUABLE UNEVALUABLE
659_Jq intergenic(PEPD,CHST8) CARD10 chr19 33564435 chr22 37491290 BND CALL_659_Jq_23 TP call 0.9842 0 0 25 1081 hg19 19 34055341.0 22 37887328.0 0 25 EVALUABLE BAM_REFUTED
659_Jq intergenic(KCTD15,LSM14A) NUMBL chr19 34076838 chr19 40680949 DEL CALL_659_Jq_24 TP call 0.9935 0 0 0 769 hg19 19 34567743.0 19 41186854.0 0 0 UNEVALUABLE UNEVALUABLE
659_Jq ZNF599 SLC25A1 chr19 34766173 chr22 19178635 BND CALL_659_Jq_25 TP call 0.931 0 0 0 1979 hg19 19 35257078.0 22 19166148.0 0 0 UNEVALUABLE UNEVALUABLE
659_Jq LTBP4 intergenic(CSF2RB,TEX33) chr19 40606260 chr22 36947800 BND CALL_659_Jq_26 TP call 0.2726 0 0 2101 2 hg19 19 41112166.0 22 37343842.0 0 2 UNEVALUABLE UNEVALUABLE
659_Jq LTBP4 MFNG chr19 40611378 chr22 37476655 BND CALL_659_Jq_27 TP call 0.9943 0 0 2120 488 hg19 19 41117284.0 22 37872693.0 0 488 EVALUABLE BAM_REFUTED
659_Jq COQ8B ELFN2 chr19 40714304 chr22 37413713 BND CALL_659_Jq_28 TP call 0.9773 0 0 2608 0 hg19 19 41220209.0 22 37809752.0 0 0 UNEVALUABLE UNEVALUABLE
659_Jq NECTIN2 LENG8 chr19 44872031 chr19 54451476 BND CALL_659_Jq_29 TP call 0.9978 0 0 1473 534 hg19 19 45375288.0 19 54962653.0 0 534 EVALUABLE BAM_REFUTED
659_Jq PLEKHA4 TRPM4 chr19 48859545 chr19 49175469 DEL CALL_659_Jq_30 TP call 0.0406 0 0 1518 19 hg19 19 49362802.0 19 49678726.0 0 19 UNEVALUABLE UNEVALUABLE
659_Jq PLEKHA4 IL4I1 chr19 48859570 chr19 49893503 BND CALL_659_Jq_31 TP call 0.999 0 0 1423 9 hg19 19 49362827.0 19 50396760.0 0 9 UNEVALUABLE UNEVALUABLE
659_Jq NCOA3 PDE4D chr20 47654849 chr5 59609378 BND CALL_659_Jq_32 FP call 0.0 0 0 0 1 hg19 20 46283593.0 5 58905204.0 0 0 UNEVALUABLE UNEVALUABLE
659_Jq RIPOR3 PPARG chr20 50655739 chr3 12298461 BND CALL_659_Jq_33 FP call 0.0 0 0 16 13 hg19 20 49272276.0 3 12339960.0 0 13 UNEVALUABLE UNEVALUABLE
659_Jq CCT8L2 BCL2L13 chr22 16591696 chr22 17708985 DUP CALL_659_Jq_34 TP call 0.9995 0 0 4413 14 hg19 22 17072586.0 22 18191751.0 0 14 UNEVALUABLE UNEVALUABLE
659_Jq BCL2L13 POLR2F chr22 17694272 chr22 37973005 DUP CALL_659_Jq_35 FP call 0.8871 0 0 5 1025 hg19 22 18177038.0 22 38369012.0 0 5 UNEVALUABLE UNEVALUABLE
659_Jq SMARCB1 RBM42 chr22 23822381 chr19 35629552 BND CALL_659_Jq_36 FP call 0.409 0 0 4 1835 hg19 22 24164568.0 19 36120454.0 0 4 UNEVALUABLE UNEVALUABLE
659_Jq TST PLEKHF1 chr22 37018646 chr19 29666267 BND CALL_659_Jq_37 TP_DUP call 0.9994 0 0 2863 537 hg19 22 37414687.0 19 30157174.0 0 537 EVALUABLE BAM_REFUTED
659_Jq ELFN2 SBSN chr22 37368591 chr19 35527029 BND CALL_659_Jq_38 TP_DUP call 0.4139 0 0 2 6774 hg19 22 37764631.0 19 36017931.0 0 2 UNEVALUABLE UNEVALUABLE
659_Jq intergenic(ELFN2,MFNG) RBM42 chr22 37461283 chr19 35633094 BND CALL_659_Jq_39 TP_DUP call 0.9953 0 0 10 1281 hg19 22 37857321.0 19 36123996.0 0 10 UNEVALUABLE UNEVALUABLE
659_Jq PLEKHA4 IL4I1 chr19 48859569 chr19 49893502 INVERSION TRUTH_659_Jq_40 TRUTH truth 825.0 0 0 1425 9 hg19 19 49362826.0 19 50396759.0 0 9 UNEVALUABLE UNEVALUABLE
659_Jq ANKRD13D RAD9A chr11 67299538 chr11 67357091 DUPLICATION TRUTH_659_Jq_41 TRUTH truth 114.0 0 0 2342 2 hg19 11 67067009.0 11 67124562.0 0 2 UNEVALUABLE UNEVALUABLE
659_Jq ARRDC2 MICALL1 chr19 18013793 chr22 37922381 TRANSLOCATION TRUTH_659_Jq_42 TRUTH truth 110.0 0 0 2 2257 hg19 19 18124602.0 22 38318388.0 0 2 UNEVALUABLE UNEVALUABLE
659_Jq KCNN1 LTBP4 chr19 17989545 chr19 40608562 INVERSION TRUTH_659_Jq_43 TRUTH truth 901.0 0 0 965 1714 hg19 19 18100354.0 19 41114468.0 0 965 EVALUABLE BAM_REFUTED
659_Jq COQ8B ELFN2 chr19 40714303 chr22 37413712 TRANSLOCATION TRUTH_659_Jq_44 TRUTH truth 222.0 0 0 2606 0 hg19 19 41220208.0 22 37809751.0 0 0 UNEVALUABLE UNEVALUABLE
659_Jq LTBP4 MFNG chr19 40611377 chr22 37476654 TRANSLOCATION TRUTH_659_Jq_45 TRUTH truth 129.0 0 0 2115 488 hg19 19 41117283.0 22 37872692.0 0 488 EVALUABLE BAM_REFUTED
659_Jq PLEKHF1 TST chr19 29666266 chr22 37018645 TRANSLOCATION TRUTH_659_Jq_46 TRUTH truth 233.0 0 0 543 2863 hg19 19 30157173.0 22 37414686.0 0 543 EVALUABLE BAM_REFUTED
659_Jq PLEKHA4 TRPM4 chr19 48859575 chr19 49175470 DELETION TRUTH_659_Jq_47 TRUTH truth 95.0 0 0 1419 19 hg19 19 49362832.0 19 49678727.0 0 19 UNEVALUABLE UNEVALUABLE
659_Jq ZNF675 CDC42EP1 chr19 23605414 chr22 37568599 TRANSLOCATION TRUTH_659_Jq_48 TRUTH truth 304.0 0 0 16 2096 hg19 19 23788216.0 22 37964606.0 0 16 UNEVALUABLE UNEVALUABLE
659_Jq SBSN ELFN2 chr19 35527028 chr22 37368590 TRANSLOCATION TRUTH_659_Jq_49 TRUTH truth 83.0 0 0 6769 2 hg19 19 36017930.0 22 37764630.0 0 2 UNEVALUABLE UNEVALUABLE
659_Jq intergenic(KCTD15,LSM14A) NUMBL chr19 34076837 chr19 40680948 DELETION TRUTH_659_Jq_50 TRUTH truth 260.0 0 0 0 769 hg19 19 34567742.0 19 41186853.0 0 0 UNEVALUABLE UNEVALUABLE
659_Jq CCT8L2 BCL2L13 chr22 16591695 chr22 17708984 DUPLICATION TRUTH_659_Jq_51 TRUTH truth 268.0 0 0 4410 14 hg19 22 17072585.0 22 18191750.0 0 14 UNEVALUABLE UNEVALUABLE
659_Jq FIBP PACS1 chr11 65884410 chr11 66169814 DUPLICATION TRUTH_659_Jq_52 TRUTH truth 178.0 0 0 1403 29 hg19 11 65651881.0 11 65937285.0 0 29 EVALUABLE BAM_REFUTED
659_Jq RBM42 intergenic(ELFN2,MFNG) chr19 35633088 chr22 37461282 TRANSLOCATION TRUTH_659_Jq_53 TRUTH truth 359.0 0 0 1277 10 hg19 19 36123990.0 22 37857320.0 0 10 UNEVALUABLE UNEVALUABLE
659_Jq intergenic(POP4,PLEKHF1) CDC42EP1 chr19 29622625 chr22 37568550 TRANSLOCATION TRUTH_659_Jq_54 TRUTH truth 38.0 0 0 3 2119 hg19 19 30113532.0 22 37964557.0 0 3 UNEVALUABLE UNEVALUABLE
659_Jq PLEKHF1 intergenic(ZNF473,IZUMO2) chr19 29674305 chr19 50141566 INVERSION TRUTH_659_Jq_55 TRUTH truth 71.0 0 0 4962 4 hg19 19 30165212.0 19 50644823.0 0 4 UNEVALUABLE UNEVALUABLE
659_Jq ZNF599 SLC25A1 chr19 34766172 chr22 19178634 TRANSLOCATION TRUTH_659_Jq_56 TRUTH truth 86.0 0 0 0 1979 hg19 19 35257077.0 22 19166147.0 0 0 UNEVALUABLE UNEVALUABLE
659_Jq intergenic(PEPD,CHST8) CARD10 chr19 33564434 chr22 37491287 TRANSLOCATION TRUTH_659_Jq_57 TRUTH truth 50.0 0 0 25 1070 hg19 19 34055340.0 22 37887325.0 0 25 EVALUABLE BAM_REFUTED
659_Jq LTBP4 intergenic(CSF2RB,TEX33) chr19 40606259 chr22 36947798 TRANSLOCATION TRUTH_659_Jq_58 TRUTH truth 44.0 0 0 2105 2 hg19 19 41112165.0 22 37343840.0 0 2 UNEVALUABLE UNEVALUABLE
659_Jq NECTIN2 LENG8 chr19 44872029 chr19 54451474 INVERSION TRUTH_659_Jq_59 TRUTH truth 235.0 0 0 1473 533 hg19 19 45375286.0 19 54962651.0 0 533 EVALUABLE BAM_REFUTED
659_SP TSBP1 intergenic(CPO,KLF7) chr6 32302628 chr2 207022762 BND CALL_659_SP_0 FP call 0.0001 0 0 234 0 hg19 6 32270405.0 2 207887486.0 0 0 UNEVALUABLE UNEVALUABLE
659_SP intergenic(RFPL4B,MARCKS) PPARG chr6 113578608 chr3 12298493 BND CALL_659_SP_1 FP call 0.0 0 0 13 13 hg19 6 113899810.0 3 12339992.0 0 13 UNEVALUABLE UNEVALUABLE
659_SP ETV1 HDAC9 chr7 13968404 chr7 18208268 DEL CALL_659_SP_2 FP call 0.0 0 0 7874 10 hg19 7 14008029.0 7 18247891.0 0 10 UNEVALUABLE UNEVALUABLE
659_SP intergenic(JRKL,CNTN5) ETV1 chr11 96811711 chr7 13932003 BND CALL_659_SP_3 FP call 0.0001 0 0 9 3931 hg19 11 96682711.0 7 13971628.0 0 9 UNEVALUABLE UNEVALUABLE
659_SP ETV6 NTRK3 chr12 11866856 chr15 88036395 BND CALL_659_SP_4 TP_DUP call 0.4102 0 0 10842 1 hg19 12 12019790.0 15 88579626.0 0 1 UNEVALUABLE UNEVALUABLE
659_SP ALOX12B intergenic(ALOX12B,ALOXE3) chr17 8087352 chr17 8087978 DEL CALL_659_SP_5 FP call 0.0001 371 0 1906 501 hg19 17 7990670.0 17 7991296.0 371 501 EVALUABLE BAM_CONFIRMED
659_SP RPN2 CHEK2 chr20 37209731 chr22 28730484 BND CALL_659_SP_6 FP call 0.0 0 0 252 3716 hg19 20 35838134.0 22 29126472.0 0 252 EVALUABLE BAM_REFUTED
659_SP intergenic(KRTAP19-6,KRTAP19-7) ETV1 chr21 30552821 chr7 13919622 BND CALL_659_SP_7 FP call 0.0 0 0 10 3 hg19 21 31925140.0 7 13959247.0 0 3 UNEVALUABLE UNEVALUABLE
659_SP ETV6 NTRK3 chr12 11866854 chr15 88036423 TRANSLOCATION TRUTH_659_SP_8 TRUTH truth 169.0 0 0 10856 1 hg19 12 12019788.0 15 88579654.0 0 1 UNEVALUABLE UNEVALUABLE
659_b6q KALRN MEI4 chr3 124680391 chr6 77690745 BND CALL_659_b6q_0 TP call 0.9466 0 0 5 698 hg19 3 124399238.0 6 78400462.0 0 5 UNEVALUABLE UNEVALUABLE
659_b6q intergenic(DIPK2A,PLOD2) NADSYN1 chr3 145281302 chr11 71473603 BND CALL_659_b6q_1 TP call 0.9883 0 0 0 919 hg19 3 144999089.0 11 71184649.0 0 0 UNEVALUABLE UNEVALUABLE
659_b6q intergenic(HMGN3,LCA5) NAALAD2 chr6 79242988 chr11 90147453 BND CALL_659_b6q_2 TP call 0.973 0 0 6 669 hg19 6 79952705.0 11 89880621.0 0 6 UNEVALUABLE UNEVALUABLE
659_b6q MYB intergenic(MYB,AHI1) chr6 135204749 chr6 135255792 DUP CALL_659_b6q_3 TP call 0.6412 0 0 6086 14 hg19 6 135525887.0 6 135576930.0 0 14 UNEVALUABLE UNEVALUABLE
659_b6q CSMD1 NFATC2 chr8 3302652 chr20 51435230 BND CALL_659_b6q_4 TP call 0.007 0 0 3 1358 hg19 8 3160174.0 20 50051767.0 0 3 UNEVALUABLE UNEVALUABLE
659_b6q UBAP2 EIF2B5 chr9 33922065 chr3 184138064 BND CALL_659_b6q_5 FP call 0.6538 0 0 441 2000 hg19 9 33922063.0 3 183855852.0 0 441 EVALUABLE BAM_REFUTED
659_b6q LRRK2 ACTN4 chr12 40234275 chr19 38717270 BND CALL_659_b6q_6 TP call 0.988 0 0 0 1743 hg19 12 40628077.0 19 39207910.0 0 0 UNEVALUABLE UNEVALUABLE
659_b6q CNTN1 intergenic(SNX16,RALYL) chr12 41029124 chr8 83271825 BND CALL_659_b6q_7 FP call 0.0005 0 0 661 4 hg19 12 41422926.0 8 84184060.0 0 4 UNEVALUABLE UNEVALUABLE
659_b6q TBK1 TMCC3 chr12 64490065 chr12 94576748 DUP CALL_659_b6q_8 TP call 0.9992 0 0 388 11 hg19 12 64883845.0 12 94970524.0 0 11 UNEVALUABLE UNEVALUABLE
659_b6q TBC1D30 COL19A1 chr12 64828485 chr6 70083916 BND CALL_659_b6q_9 FP call 0.001 0 0 378 4 hg19 12 65222265.0 6 70793808.0 0 4 UNEVALUABLE UNEVALUABLE
659_b6q GRIP1 LEMD3 chr12 67057803 chr12 65245926 BND CALL_659_b6q_10 FP call 0.0307 0 0 3 1184 hg19 12 67451583.0 12 65639706.0 0 3 UNEVALUABLE UNEVALUABLE
659_b6q PARP4 intergenic(TUBA3C,TPTE2) chr13 24442629 chr13 19387031 BND CALL_659_b6q_11 FP call 0.0002 1 0 218 107 hg19 13 25016767.0 13 19961171.0 1 107 EVALUABLE BAM_AMBIGUOUS
659_b6q GPC5 HLA-DQB1 chr13 91804373 chr6 32659672 BND CALL_659_b6q_12 FP call 0.0 0 0 1 3935 hg19 13 92456627.0 6 32627449.0 0 1 UNEVALUABLE UNEVALUABLE
659_b6q intergenic(BAHCC1,ACTG1) HGS chr17 81492519 chr17 81690696 DEL CALL_659_b6q_13 FP call 0.008 0 0 2 785 hg19 17 79459545.0 17 79657726.0 0 2 UNEVALUABLE UNEVALUABLE
659_b6q TUBB8B intergenic(FRG1,FRG2) chr18 49540 chr4 189984644 BND CALL_659_b6q_14 FP call 0.0005 1 0 306 929 hg19 18 49540.0 4 190905799.0 1 306 EVALUABLE BAM_AMBIGUOUS
659_b6q MIB1 intergenic(CDH2,DSC3) chr18 21849248 chr18 28750722 DUP CALL_659_b6q_15 FP call 0.0449 0 0 506 2 hg19 18 19429209.0 18 26330686.0 0 2 UNEVALUABLE UNEVALUABLE
659_b6q SMAD2 ANP32B chr18 47834601 chr9 97984758 BND CALL_659_b6q_16 FP call 0.0011 0 0 0 1 hg19 18 45360972.0 9 100747040.0 0 0 UNEVALUABLE UNEVALUABLE
659_b6q SMAD2 intergenic(ANKRD18A,FAM240B) chr18 47834622 chr9 38666056 BND CALL_659_b6q_17 FP call 0.0004 0 0 0 11 hg19 18 45360993.0 9 38666053.0 0 0 UNEVALUABLE UNEVALUABLE
659_b6q ZNF850 ZNF546 chr19 36719687 chr19 40019084 DUP CALL_659_b6q_18 TP call 0.1331 0 0 3025 0 hg19 19 37210589.0 19 40524991.0 0 0 UNEVALUABLE UNEVALUABLE
659_b6q GCNT7 FAM209B chr20 56525050 chr20 56533695 DEL CALL_659_b6q_19 FP call 0.0002 5 0 2276 1760 hg19 20 55100106.0 20 55108751.0 5 1760 EVALUABLE BAM_CONFIRMED
659_b6q intergenic(EDN3,PHACTR3) FGFR1 chr20 59373831 chr8 38414602 BND CALL_659_b6q_20 TP_DUP call 0.9978 0 0 0 7476 hg19 20 57948886.0 8 38272120.0 0 0 UNEVALUABLE UNEVALUABLE
659_b6q ZNF850 ZNF546 chr19 36719686 chr19 40019083 DUPLICATION TRUTH_659_b6q_21 TRUTH truth 23.0 0 0 3025 0 hg19 19 37210588.0 19 40524990.0 0 0 UNEVALUABLE UNEVALUABLE
659_b6q MYB intergenic(MYB,AHI1) chr6 135204748 chr6 135255791 DUPLICATION TRUTH_659_b6q_22 TRUTH truth 28.0 0 0 6079 14 hg19 6 135525886.0 6 135576929.0 0 14 UNEVALUABLE UNEVALUABLE
659_b6q TBK1 TMCC3 chr12 64490064 chr12 94576747 DUPLICATION TRUTH_659_b6q_23 TRUTH truth 434.0 0 0 388 11 hg19 12 64883844.0 12 94970523.0 0 11 UNEVALUABLE UNEVALUABLE
659_b6q intergenic(DIPK2A,PLOD2) NADSYN1 chr3 145281301 chr11 71473602 TRANSLOCATION TRUTH_659_b6q_24 TRUTH truth 128.0 0 0 0 920 hg19 3 144999088.0 11 71184648.0 0 0 UNEVALUABLE UNEVALUABLE
659_b6q LRRK2 ACTN4 chr12 40234274 chr19 38717266 TRANSLOCATION TRUTH_659_b6q_25 TRUTH truth 123.0 0 0 0 1739 hg19 12 40628076.0 19 39207906.0 0 0 UNEVALUABLE UNEVALUABLE
659_b6q KALRN MEI4 chr3 124680390 chr6 77690743 TRANSLOCATION TRUTH_659_b6q_26 TRUTH truth 59.0 0 0 5 698 hg19 3 124399237.0 6 78400460.0 0 5 UNEVALUABLE UNEVALUABLE
659_b6q CSMD1 NFATC2 chr8 3302651 chr20 51435229 TRANSLOCATION TRUTH_659_b6q_27 TRUTH truth 26.0 0 0 3 1357 hg19 8 3160173.0 20 50051766.0 0 3 UNEVALUABLE UNEVALUABLE
659_b6q FGFR1 intergenic(EDN3,PHACTR3) chr8 38414601 chr20 59373830 TRANSLOCATION TRUTH_659_b6q_28 TRUTH truth 528.0 0 0 7477 0 hg19 8 38272119.0 20 57948885.0 0 0 UNEVALUABLE UNEVALUABLE
659_b6q intergenic(HMGN3,LCA5) NAALAD2 chr6 79242987 chr11 90147452 TRANSLOCATION TRUTH_659_b6q_29 TRUTH truth 81.0 0 0 6 669 hg19 6 79952704.0 11 89880620.0 0 6 UNEVALUABLE UNEVALUABLE
659_bNj HLA-C intergenic(MICA,MICB) chr6 31270780 chr6 31462481 DUP CALL_659_bNj_0 FP call 0.0001 0 0 9252 940 hg19 6.0 31238557.0 6.0 31430258.0 0 940 EVALUABLE BAM_REFUTED
659_bNj HLA-DQB1 intergenic(HLA-DQB2,HLA-DOB) chr6 32668286 chr6 32764921 DEL CALL_659_bNj_1 FP call 0.0032 0 0 0 1 hg19 6.0 32636063.0 6.0 32732698.0 0 0 UNEVALUABLE UNEVALUABLE
659_bNj FOXO1 PAX3 chr13 40591283 chr2 222216182 BND CALL_659_bNj_2 TP_DUP call 0.9979 0 0 0 12075 hg19 13.0 41165420.0 2.0 223080901.0 0 0 UNEVALUABLE UNEVALUABLE
659_bNj intergenic(CEP192,LDLRAD4) WDR89 chr18 13152449 chr14 63599469 BND CALL_659_bNj_3 FP call 0.0003 11 0 441 3481 hg19 18.0 13152448.0 14.0 64066187.0 11 441 EVALUABLE BAM_CONFIRMED
659_bNj intergenic(.,.) MUC3A chrUn_JTFH01000054v1_decoy 3956 chr7 100956107 BND CALL_659_bNj_4 FP call 0.0001 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_bNj PAX3 FOXO1 chr2 222216181 chr13 40591282 TRANSLOCATION TRUTH_659_bNj_5 TRUTH truth 386.0 0 0 12061 0 hg19 2.0 223080900.0 13.0 41165419.0 0 0 UNEVALUABLE UNEVALUABLE
659_bQZ CYP4A11 CYP4A22 chr1 46930202 chr1 47148690 BND CALL_659_bQZ_0 FP call 0.0 0 0 1670 1728 hg19 1 47395874.0 1 47614362.0 0 1670 EVALUABLE BAM_REFUTED
659_bQZ ENSG00000289697 CFHR1 chr1 196743388 chr1 196828212 DUP CALL_659_bQZ_1 FP call 0.0001 1 0 2163 231 hg19 1 196712518.0 1 196797342.0 1 231 EVALUABLE BAM_AMBIGUOUS
659_bQZ intergenic(SGK1,ALDH8A1) DCUN1D1 chr6 134785253 chr3 182944173 BND CALL_659_bQZ_2 FP call 0.0 0 0 9 0 hg19 6 135106391.0 3 182661961.0 0 0 UNEVALUABLE UNEVALUABLE
659_bQZ intergenic(SAMD5,SASH1) BRD3 chr6 147790939 chr9 134035892 BND CALL_659_bQZ_3 FP call 0.0 0 0 6 2077 hg19 6 148112075.0 9 136901014.0 0 6 UNEVALUABLE UNEVALUABLE
659_bQZ intergenic(ZNF716,ZNF722) WT1 chr7 63102356 chr11 32430711 BND CALL_659_bQZ_4 FP call 0.0 0 0 14 4669 hg19 7 62562734.0 11 32452257.0 0 14 UNEVALUABLE UNEVALUABLE
659_bQZ AGAP3 BRAF chr7 151132851 chr7 140790198 BND CALL_659_bQZ_5 TP_DUP call 0.3383 0 0 0 6837 hg19 7 150829938.0 7 140489998.0 0 0 UNEVALUABLE UNEVALUABLE
659_bQZ PLGRKT CD274 chr9 5436204 chr9 5468411 DUP CALL_659_bQZ_6 FP call 0.3687 0 0 0 409 hg19 9 5436204.0 9 5468411.0 0 0 UNEVALUABLE UNEVALUABLE
659_bQZ FAM13C HLA-C chr10 59300766 chr6 31268856 BND CALL_659_bQZ_7 FP call 0.0 0 0 0 5531 hg19 10 61060526.0 6 31236633.0 0 0 UNEVALUABLE UNEVALUABLE
659_bQZ intergenic(FLRT2,GALC) YWHAE chr14 85800660 chr17 1351772 BND CALL_659_bQZ_8 FP call 0.0 0 0 11 6 hg19 14 86267004.0 17 1255066.0 0 6 UNEVALUABLE UNEVALUABLE
659_bQZ BRAF AGAP3 chr7 140790196 chr7 151132851 INVERSION TRUTH_659_bQZ_9 TRUTH truth 31.0 0 0 6837 0 hg19 7 140489996.0 7 150829938.0 0 0 UNEVALUABLE UNEVALUABLE
659_boM intergenic(HIVEP3,GUCA2B) XRCC1 chr1 42124215 chr19 43543378 BND CALL_659_boM_0 FP call 0.0 0 0 4 1042 hg19 1 42589886.0 19 44047530.0 0 4 UNEVALUABLE UNEVALUABLE
659_boM OSBPL6 TTN chr2 178356780 chr2 178622761 DUP CALL_659_boM_1 FP call 0.6383 0 0 7 435 hg19 2 179221507.0 2 179487488.0 0 7 UNEVALUABLE UNEVALUABLE
659_boM SENP7 NFKBIZ chr3 101456005 chr3 101859420 DUP CALL_659_boM_2 FP call 0.7342 0 0 1 332 hg19 3 101174849.0 3 101578264.0 0 1 UNEVALUABLE UNEVALUABLE
659_boM DSPP XRCC1 chr4 87611031 chr19 43543379 BND CALL_659_boM_3 FP call 0.0 0 0 348 1042 hg19 4 88532183.0 19 44047531.0 0 348 EVALUABLE BAM_REFUTED
659_boM SIL1 P2RY8 chr5 138957342 chrX 1462696 BND CALL_659_boM_4 FP call 0.0 0 0 1 0 hg19 5 138293031.0 X 1581589.0 0 0 UNEVALUABLE UNEVALUABLE
659_boM intergenic(TRIM27,ZNF311) ZNF311 chr6 28981765 chr6 28995925 DUP CALL_659_boM_5 TP call 0.0261 0 0 0 4722 hg19 6 28949542.0 6 28963702.0 0 0 UNEVALUABLE UNEVALUABLE
659_boM intergenic(HLA-G,HLA-A) HLA-A chr6 29893480 chr6 29948195 DEL CALL_659_boM_6 FP call 0.0 0 0 2 0 hg19 6 29861257.0 6 29915972.0 0 0 UNEVALUABLE UNEVALUABLE
659_boM HLA-A HLA-B chr6 29943021 chr6 31356739 BND CALL_659_boM_7 FP call 0.0002 3 0 10476 10364 hg19 6 29910798.0 6 31324516.0 3 10364 EVALUABLE BAM_CONFIRMED
659_boM HLA-A HLA-C chr6 29943399 chr6 31271181 BND CALL_659_boM_8 FP call 0.0 1 0 10097 10414 hg19 6 29911176.0 6 31238958.0 1 10097 EVALUABLE BAM_AMBIGUOUS
659_boM intergenic(HLA-A,POLR1H) HLA-C chr6 29957544 chr6 31270399 BND CALL_659_boM_9 FP call 0.0 0 0 451 8569 hg19 6 29925321.0 6 31238176.0 0 451 EVALUABLE BAM_REFUTED
659_boM EGFR intergenic(VOPP1,SEPTIN14) chr7 55205934 chr7 55728295 DUP CALL_659_boM_10 FP call 0.0013 0 0 12146 0 hg19 7 55273627.0 7 55795988.0 0 0 UNEVALUABLE UNEVALUABLE
659_boM VOPP1 EGFR chr7 55439471 chr7 55142411 BND CALL_659_boM_11 FP call 0.0 0 0 1 2032 hg19 7 55507164.0 7 55210104.0 0 1 UNEVALUABLE UNEVALUABLE
659_boM SEPTIN14 EGFR chr7 55800352 chr7 55200628 BND CALL_659_boM_12 TP_DUP call 0.9947 0 0 9 10442 hg19 7 55868045.0 7 55268321.0 0 9 UNEVALUABLE UNEVALUABLE
659_boM DPP3 SPTBN2 chr11 66504693 chr11 66698500 DUP CALL_659_boM_13 TP call 0.8027 0 0 1200 1536 hg19 11 66272164.0 11 66465971.0 0 1200 EVALUABLE BAM_REFUTED
659_boM intergenic(RBM26,NDFIP2) GPC5 chr13 79435575 chr13 91448847 BND CALL_659_boM_14 TP call 0.2714 0 0 0 775 hg19 13 80009710.0 13 92101101.0 0 0 UNEVALUABLE UNEVALUABLE
659_boM OTUB2 DDX24 chr14 94036739 chr14 94055148 BND CALL_659_boM_15 TP call 0.9808 0 0 8 1061 hg19 14 94503085.0 14 94521494.0 0 8 UNEVALUABLE UNEVALUABLE
659_boM intergenic(SELENOS,SNRPA1) SNRPA1 chr15 101281424 chr15 101281727 DEL CALL_659_boM_16 FP call 0.0377 187 0 373 378 hg19 15 101821629.0 15 101821932.0 187 373 EVALUABLE BAM_CONFIRMED
659_boM MAST3 IQCN chr19 18130864 chr19 18257411 DUP CALL_659_boM_17 TP call 0.0346 0 0 953 3498 hg19 19 18241674.0 19 18368221.0 0 953 EVALUABLE BAM_REFUTED
659_boM intergenic(TRIM27,ZNF311) ZNF311 chr6 28981764 chr6 28995924 DUPLICATION TRUTH_659_boM_18 TRUTH truth 107.0 0 0 0 4720 hg19 6 28949541.0 6 28963701.0 0 0 UNEVALUABLE UNEVALUABLE
659_boM EGFR SEPTIN14 chr7 55201224 chr7 55802769 DELETION TRUTH_659_boM_19 TRUTH truth 489.0 0 0 12732 8 hg19 7 55268917.0 7 55870462.0 0 8 UNEVALUABLE UNEVALUABLE
659_boM DPP3 SPTBN2 chr11 66504700 chr11 66698514 DUPLICATION TRUTH_659_boM_20 TRUTH truth 46.0 0 0 1200 1574 hg19 11 66272171.0 11 66465985.0 0 1200 EVALUABLE BAM_REFUTED
659_boM intergenic(RBM26,NDFIP2) GPC5 chr13 79435574 chr13 91448846 INVERSION TRUTH_659_boM_21 TRUTH truth 29.0 0 0 0 775 hg19 13 80009709.0 13 92101100.0 0 0 UNEVALUABLE UNEVALUABLE
659_boM OTUB2 DDX24 chr14 94036738 chr14 94055147 INVERSION TRUTH_659_boM_22 TRUTH truth 93.0 0 0 8 1061 hg19 14 94503084.0 14 94521493.0 0 8 UNEVALUABLE UNEVALUABLE
659_boM MAST3 IQCN chr19 18130863 chr19 18257410 DUPLICATION TRUTH_659_boM_23 TRUTH truth 43.0 0 0 953 3493 hg19 19 18241673.0 19 18368220.0 0 953 EVALUABLE BAM_REFUTED
659_btj SEC16B ENSG00000289768 chr1 177956415 chr1 161626228 BND CALL_659_btj_0 FP call 0.0 0 0 0 1542 hg19 1 177925550.0 1 161596018.0 0 0 UNEVALUABLE UNEVALUABLE
659_btj TRIP12 PRKAG3 chr2 229851301 chr2 218830245 BND CALL_659_btj_1 FP call 0.0033 0 0 20 2775 hg19 2 230716017.0 2 219694968.0 0 20 EVALUABLE BAM_REFUTED
659_btj RIOX2 intergenic(RIOX2,GABRR3) chr3 97967313 chr3 97981216 DEL CALL_659_btj_2 FP call 0.0018 0 0 1920 0 hg19 3 97686157.0 3 97700060.0 0 0 UNEVALUABLE UNEVALUABLE
659_btj intergenic(TPRG1,TP63) CEP164 chr3 189515649 chr11 117395621 BND CALL_659_btj_3 FP call 0.1234 0 0 17 2126 hg19 3 189233438.0 11 117266337.0 0 17 UNEVALUABLE UNEVALUABLE
659_btj intergenic(SLC25A4,CFAP97) TRPC7 chr4 185157295 chr5 136216223 BND CALL_659_btj_4 FP call 0.0009 0 0 10 404 hg19 4 186078449.0 5 135551911.0 0 10 UNEVALUABLE UNEVALUABLE
659_btj intergenic(HIVEP1,EDN1) KCNH5 chr6 12287632 chr14 62707646 BND CALL_659_btj_5 FP call 0.0 0 0 4 2273 hg19 6 12287865.0 14 63174364.0 0 4 UNEVALUABLE UNEVALUABLE
659_btj VPS52 intergenic(PTCHD4,MMUT) chr6 33270218 chr6 49298901 DEL CALL_659_btj_6 FP call 0.0084 0 0 1402 0 hg19 6 33237995.0 6 49266545.0 0 0 UNEVALUABLE UNEVALUABLE
659_btj intergenic(NPVF,NFE2L3) TIMM22 chr7 25540703 chr17 998959 BND CALL_659_btj_7 TP call 0.1541 0 0 0 1206 hg19 7 25580323.0 17 902199.0 0 0 UNEVALUABLE UNEVALUABLE
659_btj GCNT1 RUNX1T1 chr9 76499703 chr8 91959639 BND CALL_659_btj_8 FP call 0.0003 0 0 9 318 hg19 9 79114619.0 8 92971867.0 0 9 UNEVALUABLE UNEVALUABLE
659_btj intergenic(JRKL,CNTN5) CHRM2 chr11 97416981 chr7 137015786 BND CALL_659_btj_9 FP call 0.0022 0 0 0 3595 hg19 11 97287981.0 7 136700533.0 0 0 UNEVALUABLE UNEVALUABLE
659_btj KIF21A RFLNA chr12 39340181 chr12 123985348 DEL CALL_659_btj_10 FP call 0.0085 0 0 576 1 hg19 12 39733983.0 12 124469895.0 0 1 UNEVALUABLE UNEVALUABLE
659_btj ENSG00000257921 EVPL chr12 57793374 chr17 76007443 BND CALL_659_btj_11 TP call 0.4235 0 0 500 3891 hg19 12 58187157.0 17 74003524.0 0 500 EVALUABLE BAM_REFUTED
659_btj intergenic(MSRB3,HMGA2) PAXBP1 chr12 65543267 chr21 32771525 BND CALL_659_btj_12 FP call 0.9616 0 0 6 1251 hg19 12 65937047.0 21 34143836.0 0 6 UNEVALUABLE UNEVALUABLE
659_btj intergenic(MSRB3,HMGA2) ATP2B1 chr12 65623458 chr12 89621743 BND CALL_659_btj_13 FP call 0.0002 0 0 1 934 hg19 12 66017238.0 12 90015520.0 0 1 UNEVALUABLE UNEVALUABLE
659_btj intergenic(CSRP2,E2F7) BRWD1 chr12 77002386 chr21 39200283 BND CALL_659_btj_14 TP call 0.7622 0 0 7 904 hg19 12 77396166.0 21 40572209.0 0 7 UNEVALUABLE UNEVALUABLE
659_btj E2F7 ABCA9 chr12 77022735 chr17 68989092 BND CALL_659_btj_15 FP call 0.0065 0 0 0 337 hg19 12 77416515.0 17 66985233.0 0 0 UNEVALUABLE UNEVALUABLE
659_btj intergenic(TMTC2,SLC6A15) CEP290 chr12 83578000 chr12 88114464 DUP CALL_659_btj_16 FP call 0.016 0 0 0 485 hg19 12 83971779.0 12 88508241.0 0 0 UNEVALUABLE UNEVALUABLE
659_btj intergenic(ATP2B1,CCER1) KRTAP10-6 chr12 89714715 chr21 44591771 BND CALL_659_btj_17 FP call 0.0886 0 0 0 13325 hg19 12 90108492.0 21 46011652.0 0 0 UNEVALUABLE UNEVALUABLE
659_btj CDK17 RASSF9 chr12 96366841 chr12 85805727 BND CALL_659_btj_18 TP_DUP call 0.0466 0 0 4 2913 hg19 12 96760619.0 12 86199505.0 0 4 UNEVALUABLE UNEVALUABLE
659_btj CFAP54 SVOP chr12 96733756 chr12 108960928 BND CALL_659_btj_19 TP call 0.9304 0 0 1 1079 hg19 12 97127534.0 12 109354704.0 0 1 UNEVALUABLE UNEVALUABLE
659_btj CFAP54 SCYL2 chr12 96763070 chr12 100337439 BND CALL_659_btj_20 TP call 0.6619 0 0 1 680 hg19 12 97156848.0 12 100731217.0 0 1 UNEVALUABLE UNEVALUABLE
659_btj ANO4 ABCA6 chr12 100746699 chr17 69140659 BND CALL_659_btj_21 FP call 0.0307 0 0 5 360 hg19 12 101140477.0 17 67136800.0 0 5 UNEVALUABLE UNEVALUABLE
659_btj RFX4 KIF3B chr12 106687001 chr20 32319074 BND CALL_659_btj_22 FP call 0.0 0 0 1149 7 hg19 12 107080779.0 20 30906877.0 0 7 UNEVALUABLE UNEVALUABLE
659_btj ACAD10 intergenic(B3GALT5,IGSF5) chr12 111753888 chr21 39737861 BND CALL_659_btj_23 TP call 0.0905 0 0 1242 0 hg19 12 112191692.0 21 41109788.0 0 0 UNEVALUABLE UNEVALUABLE
659_btj TMEM116 SLC6A15 chr12 112012846 chr12 84861725 BND CALL_659_btj_24 FP call 0.0144 0 0 66 1557 hg19 12 112450650.0 12 85255504.0 0 66 EVALUABLE BAM_REFUTED
659_btj intergenic(LHX5,RBM19) SIRT7 chr12 113533082 chr17 81912505 BND CALL_659_btj_25 TP call 0.406 0 0 0 1035 hg19 12 113970887.0 17 79870381.0 0 0 UNEVALUABLE UNEVALUABLE
659_btj COPS2 IZUMO4 chr15 49119739 chr19 2096975 BND CALL_659_btj_26 FP call 0.9353 0 0 13 1374 hg19 15 49411936.0 19 2096974.0 0 13 UNEVALUABLE UNEVALUABLE
659_btj intergenic(TNFAIP8L3,CYP19A1) DMXL2 chr15 51196675 chr15 51542414 BND CALL_659_btj_27 FP call 0.0043 0 0 0 702 hg19 15 51488872.0 15 51834611.0 0 0 UNEVALUABLE UNEVALUABLE
659_btj intergenic(CBFA2T3,ACSF3) TINCR chr16 89073017 chr19 5567701 BND CALL_659_btj_28 FP call 0.1198 0 0 3 0 hg19 16 89139425.0 19 5567712.0 0 0 UNEVALUABLE UNEVALUABLE
659_btj TUBB3 COL22A1 chr16 89935972 chr8 138871821 BND CALL_659_btj_29 FP call 0.0 0 0 6687 0 hg19 16 90002380.0 8 139884064.0 0 0 UNEVALUABLE UNEVALUABLE
659_btj NF1 PRRG3 chr17 31373104 chrX 151700841 BND CALL_659_btj_30 TP call 0.5685 0 0 0 1086 hg19 17 29700122.0 X 150869313.0 0 0 UNEVALUABLE UNEVALUABLE
659_btj intergenic(KRTAP17-1,KRT33A) ENSG00000264058 chr17 41316992 chr17 40636436 BND CALL_659_btj_31 FP call 0.0001 0 0 0 1184 hg19 17 39473244.0 17 38792688.0 0 0 UNEVALUABLE UNEVALUABLE
659_btj PLEKHH3 intergenic(MYL4,ITGB3) chr17 42673776 chr17 47244527 DEL CALL_659_btj_32 FP call 0.0015 0 0 3470 0 hg19 17 40825794.0 17 45321893.0 0 0 UNEVALUABLE UNEVALUABLE
659_btj KPNB1 TRIOBP chr17 47681646 chr22 37724595 BND CALL_659_btj_33 TP call 0.1248 0 0 17 18771 hg19 17 45759012.0 22 38120602.0 0 17 UNEVALUABLE UNEVALUABLE
659_btj intergenic(TMEM92,XYLT2) KIF24 chr17 50298157 chr9 34257922 BND CALL_659_btj_34 FP call 0.0114 0 0 7 1949 hg19 17 48375518.0 9 34257920.0 0 7 UNEVALUABLE UNEVALUABLE
659_btj SLC39A11 ATOSB chr17 72792424 chr9 35106542 BND CALL_659_btj_35 FP call 0.0068 0 0 2 2085 hg19 17 70788563.0 9 35106539.0 0 2 UNEVALUABLE UNEVALUABLE
659_btj intergenic(FADS6,USH1G) EVPL chr17 74908341 chr17 76008770 DUP CALL_659_btj_36 FP call 0.8058 0 0 12 4847 hg19 17 72904434.0 17 74004851.0 0 12 UNEVALUABLE UNEVALUABLE
659_btj TMPRSS2 CNOT2 chr21 41493301 chr12 70315959 BND CALL_659_btj_37 TP_DUP call 0.9995 0 0 11546 0 hg19 21 42865228.0 12 70709739.0 0 0 UNEVALUABLE UNEVALUABLE
659_btj KRTAP10-4 CEP290 chr21 44574017 chr12 88123895 BND CALL_659_btj_38 FP call 0.0 0 0 11906 2 hg19 21 45993894.0 12 88517672.0 0 2 UNEVALUABLE UNEVALUABLE
659_btj COL18A1 intergenic(MDM1,RAP1B) chr21 45491310 chr12 68406875 BND CALL_659_btj_39 TP_DUP call 0.9505 0 0 863 2 hg19 21 46911224.0 12 68800655.0 0 2 UNEVALUABLE UNEVALUABLE
659_btj S100B KITLG chr21 46599445 chr12 88525777 BND CALL_659_btj_40 TP_DUP call 0.481 0 0 593 0 hg19 21 48019358.0 12 88919554.0 0 0 UNEVALUABLE UNEVALUABLE
659_btj KIAA1671 TRIOBP chr22 25110739 chr22 37724051 DUP CALL_659_btj_41 TP call 0.0002 0 0 1 17454 hg19 22 25506706.0 22 38120058.0 0 1 UNEVALUABLE UNEVALUABLE
659_btj PASD1 FUT9 chrX 151676042 chr6 96070493 BND CALL_659_btj_42 FP call 0.8928 0 0 515 2 hg19 X 150844514.0 6 96518369.0 0 2 UNEVALUABLE UNEVALUABLE
659_btj PLXNA3 KRT15 chrX 154465678 chr17 41519680 BND CALL_659_btj_43 FP call 0.0096 0 0 1322 1 hg19 X 153694021.0 17 39675932.0 0 1 UNEVALUABLE UNEVALUABLE
659_btj intergenic(NPVF,NFE2L3) TIMM22 chr7 25540702 chr17 998958 TRANSLOCATION TRUTH_659_btj_44 TRUTH truth 26.0 0 0 0 1204 hg19 7 25580322.0 17 902198.0 0 0 UNEVALUABLE UNEVALUABLE
659_btj intergenic(DBX2,ANO6) CNOT2 chr12 45165714 chr12 70337502 DELETION TRUTH_659_btj_45 TRUTH truth 29.0 0 0 0 423 hg19 12 45559497.0 12 70731282.0 0 0 UNEVALUABLE UNEVALUABLE
659_btj ENSG00000257921 EVPL chr12 57793373 chr17 76007442 TRANSLOCATION TRUTH_659_btj_46 TRUTH truth 56.0 0 0 500 3892 hg19 12 58187156.0 17 74003523.0 0 500 EVALUABLE BAM_REFUTED
659_btj intergenic(MDM1,RAP1B) COL18A1 chr12 68406873 chr21 45491309 TRANSLOCATION TRUTH_659_btj_47 TRUTH truth 24.0 0 0 2 863 hg19 12 68800653.0 21 46911223.0 0 2 UNEVALUABLE UNEVALUABLE
659_btj CNOT2 TMPRSS2 chr12 70315958 chr21 41493300 TRANSLOCATION TRUTH_659_btj_48 TRUTH truth 453.0 0 0 0 11542 hg19 12 70709738.0 21 42865227.0 0 0 UNEVALUABLE UNEVALUABLE
659_btj intergenic(CSRP2,E2F7) BRWD1 chr12 77002385 chr21 39200280 TRANSLOCATION TRUTH_659_btj_49 TRUTH truth 30.0 0 0 7 904 hg19 12 77396165.0 21 40572206.0 0 7 UNEVALUABLE UNEVALUABLE
659_btj RASSF9 CDK17 chr12 85805724 chr12 96366842 INVERSION TRUTH_659_btj_50 TRUTH truth 55.0 0 0 2927 4 hg19 12 86199502.0 12 96760620.0 0 4 UNEVALUABLE UNEVALUABLE
659_btj KITLG S100B chr12 88525776 chr21 46599444 TRANSLOCATION TRUTH_659_btj_51 TRUTH truth 34.0 0 0 0 593 hg19 12 88919553.0 21 48019357.0 0 0 UNEVALUABLE UNEVALUABLE
659_btj CFAP54 SVOP chr12 96733754 chr12 108960926 INVERSION TRUTH_659_btj_52 TRUTH truth 178.0 0 0 1 1079 hg19 12 97127532.0 12 109354702.0 0 1 UNEVALUABLE UNEVALUABLE
659_btj CFAP54 SCYL2 chr12 96763069 chr12 100337438 INVERSION TRUTH_659_btj_53 TRUTH truth 29.0 0 0 1 680 hg19 12 97156847.0 12 100731216.0 0 1 UNEVALUABLE UNEVALUABLE
659_btj ACAD10 intergenic(B3GALT5,IGSF5) chr12 111753887 chr21 39737860 TRANSLOCATION TRUTH_659_btj_54 TRUTH truth 28.0 0 0 1244 0 hg19 12 112191691.0 21 41109787.0 0 0 UNEVALUABLE UNEVALUABLE
659_btj intergenic(LHX5,RBM19) SIRT7 chr12 113533081 chr17 81912504 TRANSLOCATION TRUTH_659_btj_55 TRUTH truth 30.0 0 0 0 1035 hg19 12 113970886.0 17 79870380.0 0 0 UNEVALUABLE UNEVALUABLE
659_btj NF1 PRRG3 chr17 31373103 chrX 151700840 TRANSLOCATION TRUTH_659_btj_56 TRUTH truth 28.0 0 0 0 1087 hg19 17 29700121.0 X 150869312.0 0 0 UNEVALUABLE UNEVALUABLE
659_btj KPNB1 TRIOBP chr17 47681645 chr22 37724594 TRANSLOCATION TRUTH_659_btj_57 TRUTH truth 47.0 0 0 17 18774 hg19 17 45759011.0 22 38120601.0 0 17 UNEVALUABLE UNEVALUABLE
659_btj KIAA1671 TRIOBP chr22 25110738 chr22 37724197 DUPLICATION TRUTH_659_btj_58 TRUTH truth 57.0 0 0 1 18402 hg19 22 25506705.0 22 38120204.0 0 1 UNEVALUABLE UNEVALUABLE
659_cCD LRP1B IGF2 chr2 140818571 chr11 2130772 BND CALL_659_cCD_0 FP call 0.0 0 0 5 2 hg19 2 141576140.0 11 2152002.0 0 2 UNEVALUABLE UNEVALUABLE
659_cCD intergenic(EDEM1,GRM7) NELFCD chr3 6449810 chr20 58990925 BND CALL_659_cCD_1 TP call 0.8819 0 0 0 1607 hg19 3 6491497.0 20 57565980.0 0 0 UNEVALUABLE UNEVALUABLE
659_cCD intergenic(EPHB3,MAGEF1) MAGEF1 chr3 184709079 chr3 184711101 BND CALL_659_cCD_2 TP call 0.9601 0 0 9 4153 hg19 3 184426867.0 3 184428889.0 0 9 UNEVALUABLE UNEVALUABLE
659_cCD TACC3 FGFR3 chr4 1738993 chr4 1806992 DUP CALL_659_cCD_3 TP call 0.9987 0 0 17 17555 hg19 4 1740720.0 4 1808719.0 0 17 UNEVALUABLE UNEVALUABLE
659_cCD intergenic(HLA-G,HLA-A) HLA-A chr6 29891758 chr6 29946413 DUP CALL_659_cCD_4 FP call 0.0 0 0 27 288 hg19 6 29859535.0 6 29914190.0 0 27 EVALUABLE BAM_REFUTED
659_cCD ATP2B3 BCAP31 chrX 153559809 chrX 153711561 DUP CALL_659_cCD_5 TP call 0.7888 0 0 1203 5 hg19 X 152825267.0 X 152977016.0 0 5 UNEVALUABLE UNEVALUABLE
659_cCD intergenic(EDEM1,GRM7) CTSZ chr3 6449809 chr20 58990921 TRANSLOCATION TRUTH_659_cCD_6 TRUTH truth 32.0 0 0 0 1598 hg19 3 6491496.0 20 57565976.0 0 0 UNEVALUABLE UNEVALUABLE
659_cCD intergenic(EPHB3,MAGEF1) MAGEF1 chr3 184709077 chr3 184711099 INVERSION TRUTH_659_cCD_7 TRUTH truth 37.0 0 0 9 4148 hg19 3 184426865.0 3 184428887.0 0 9 UNEVALUABLE UNEVALUABLE
659_cCD TACC3 FGFR3 chr4 1738992 chr4 1806991 DUPLICATION TRUTH_659_cCD_8 TRUTH truth 276.0 0 0 17 17546 hg19 4 1740719.0 4 1808718.0 0 17 UNEVALUABLE UNEVALUABLE
659_cCD ATP2B3 BCAP31 chrX 153559808 chrX 153711560 DUPLICATION TRUTH_659_cCD_9 TRUTH truth 26.0 0 0 1203 5 hg19 X 152825266.0 X 152977015.0 0 5 UNEVALUABLE UNEVALUABLE
659_cvg intergenic(SRGAP2C,H3-7) FANCL chr1 124952265 chr2 58222015 BND CALL_659_cvg_0 FP call 0.0 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_cvg ELK4 TMPRSS2 chr1 205629973 chr21 41497667 BND CALL_659_cvg_1 TP call 0.9879 0 0 4 10651 hg19 1 205599101.0 21.0 42869594.0 0 4 UNEVALUABLE UNEVALUABLE
659_cvg TRAK1 RPS24 chr3 42193844 chr10 78036307 BND CALL_659_cvg_2 TP call 0.5674 0 0 615 66 hg19 3 42235336.0 10.0 79796065.0 0 66 EVALUABLE BAM_REFUTED
659_cvg intergenic(VSTM2A,SEC61G) LANCL2 chr7 54747930 chr7 55431281 DUP CALL_659_cvg_3 FP call 0.0494 0 0 15 426 hg19 7 54815623.0 7.0 55498974.0 0 15 UNEVALUABLE UNEVALUABLE
659_cvg intergenic(ZNF804B,STEAP1) POT1 chr7 90068844 chr7 124898299 BND CALL_659_cvg_4 FP call 0.0 0 0 4 0 hg19 7 89698158.0 7.0 124538353.0 0 0 UNEVALUABLE UNEVALUABLE
659_cvg intergenic(DYRK2,IFNG) IGF1 chr12 68066416 chr12 102399023 DEL CALL_659_cvg_5 FP call 0.0 0 0 2 7 hg19 12 68460196.0 12.0 102792801.0 0 2 UNEVALUABLE UNEVALUABLE
659_cvg MX1 TMPRSS2 chr21 41456136 chr21 41497845 BND CALL_659_cvg_6 TP call 0.9634 0 0 14 11305 hg19 21 42828063.0 21.0 42869772.0 0 14 UNEVALUABLE UNEVALUABLE
659_cvg EWSR1 intergenic(MAN1A1,TBC1D32) chr22 29286830 chr6 120412199 BND CALL_659_cvg_7 FP call 0.0 0 0 2378 4 hg19 22 29682819.0 6.0 120733345.0 0 4 UNEVALUABLE UNEVALUABLE
659_cvg intergenic(ZXDA,SPIN4) INSL6 chrX 63077266 chr9 5128041 BND CALL_659_cvg_8 FP call 0.0 0 0 12 8 hg19 X 62296736.0 9.0 5128041.0 0 8 UNEVALUABLE UNEVALUABLE
659_cvg MX1 TMPRSS2 chr21 41456135 chr21 41497844 INVERSION TRUTH_659_cvg_9 TRUTH truth 198.0 0 0 14 11304 hg19 21 42828062.0 21.0 42869771.0 0 14 UNEVALUABLE UNEVALUABLE
659_cvg ELK4 TMPRSS2 chr1 205629972 chr21 41497664 TRANSLOCATION TRUTH_659_cvg_10 TRUTH truth 382.0 0 0 4 10632 hg19 1 205599100.0 21.0 42869591.0 0 4 UNEVALUABLE UNEVALUABLE
659_cvg TRAK1 RPS24 chr3 42193843 chr10 78036306 TRANSLOCATION TRUTH_659_cvg_11 TRUTH truth 39.0 0 0 616 67 hg19 3 42235335.0 10.0 79796064.0 0 67 EVALUABLE BAM_REFUTED
659_d0M SH3PXD2B intergenic(SH3PXD2B,NEURL1B) chr5 172394614 chr5 172503776 DEL CALL_659_d0M_0 TP call 0.9932 0 0 474 27 hg19 5 171821618.0 5 171930780.0 0 27 EVALUABLE BAM_REFUTED
659_d0M HLA-F HLA-A chr6 29725718 chr6 29944711 DEL CALL_659_d0M_1 FP call 0.0005 0 0 1493 6910 hg19 6 29693495.0 6 29912488.0 0 1493 EVALUABLE BAM_REFUTED
659_d0M AKT1 intergenic(ZBTB42,CEP170B) chr14 104792952 chr14 104808617 DUP CALL_659_d0M_2 FP call 0.0 0 0 1082 8 hg19 14 105259289.0 14 105274954.0 0 8 UNEVALUABLE UNEVALUABLE
659_d0M SH3PXD2B intergenic(SH3PXD2B,NEURL1B) chr5 172394613 chr5 172503775 DELETION TRUTH_659_d0M_3 TRUTH truth 40.0 0 0 474 27 hg19 5 171821617.0 5 171930779.0 0 27 EVALUABLE BAM_REFUTED
659_dB3 IL1R1 MYC chr2 102165069 chr8 127742921 BND CALL_659_dB3_0 FP call 0.8988 0 0 949 0 hg19 2 102781529.0 8 128755167.0 0 0 UNEVALUABLE UNEVALUABLE
659_dB3 NPM1 ALK chr5 171391901 chr2 29224710 BND CALL_659_dB3_1 TP_DUP call 0.9997 1 0 7926 8907 hg19 5 170818905.0 2 29447576.0 1 7926 EVALUABLE BAM_AMBIGUOUS
659_dB3 MYC MAP4K4 chr8 127742947 chr2 101868888 BND CALL_659_dB3_2 FP call 0.1052 0 0 0 2 hg19 8 128755193.0 2 102485350.0 0 0 UNEVALUABLE UNEVALUABLE
659_dB3 ALK NPM1 chr2 29224709 chr5 171391900 TRANSLOCATION TRUTH_659_dB3_3 TRUTH truth 231.0 1 0 8903 7915 hg19 2 29447575.0 5 170818904.0 1 7915 EVALUABLE BAM_AMBIGUOUS
659_drc MTOR SEPTIN4 chr1 11201958 chr17 58525701 BND CALL_659_drc_0 FP call 0.012 0 0 20 1585 hg19 1 11262015.0 17 56603062.0 0 20 EVALUABLE BAM_REFUTED
659_drc PLEKHM2 intergenic(NOP58,BMPR2) chr1 15727579 chr2 202337277 BND CALL_659_drc_1 FP call 0.0001 0 0 2206 27 hg19 1 16054074.0 2 203202000.0 0 27 EVALUABLE BAM_REFUTED
659_drc TCEANC2 ZNF217 chr1 54074081 chr20 53581989 BND CALL_659_drc_2 FP call 0.0 0 0 8 12378 hg19 1 54539754.0 20 52198528.0 0 8 UNEVALUABLE UNEVALUABLE
659_drc intergenic(NFIA,TM2D1) PAX3 chr1 61615344 chr2 222212654 BND CALL_659_drc_3 FP call 0.0 0 0 18 10832 hg19 1 62081016.0 2 223077373.0 0 18 UNEVALUABLE UNEVALUABLE
659_drc NEGR1 SMAD2 chr1 71674587 chr18 47879496 BND CALL_659_drc_4 FP call 0.0012 0 0 0 7 hg19 1 72140270.0 18 45405867.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc PTGFR MSH2 chr1 78428427 chr2 47563345 BND CALL_659_drc_5 FP call 0.0 0 0 1 1 hg19 1 78894112.0 2 47790484.0 0 1 UNEVALUABLE UNEVALUABLE
659_drc PLPPR5 SETD2 chr1 98953395 chr3 47101598 BND CALL_659_drc_6 FP call 0.0 0 0 1217 567 hg19 1 99418951.0 3 47143088.0 0 567 EVALUABLE BAM_REFUTED
659_drc intergenic(SPAG17,TBX15) AR chr1 118287980 chrX 67710040 BND CALL_659_drc_7 FP call 0.0 0 0 1 0 hg19 1 118830603.0 X 66929882.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc VPS45 intergenic(TRPC4AP,EDEM2) chr1 150081393 chr20 35110686 BND CALL_659_drc_8 FP call 0.0002 0 0 769 2 hg19 1 150053475.0 20 33698489.0 0 2 UNEVALUABLE UNEVALUABLE
659_drc POGZ intergenic(PSAP,CHST3) chr1 151408445 chr10 71852338 BND CALL_659_drc_9 FP call 0.0002 0 0 1485 6 hg19 1 151380921.0 10 73612095.0 0 6 UNEVALUABLE UNEVALUABLE
659_drc intergenic(IFI16,AIM2) AIM2 chr1 159055974 chr1 159063609 BND CALL_659_drc_10 FP call 0.0052 0 0 2 825 hg19 1 159025764.0 1 159033399.0 0 2 UNEVALUABLE UNEVALUABLE
659_drc TIPRL AR chr1 168201806 chrX 67720909 BND CALL_659_drc_11 FP call 0.0 0 0 0 5 hg19 1 168171044.0 X 66940751.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc intergenic(PLA2G4A,BRINP3) SMAD2 chr1 187293516 chr18 47879496 BND CALL_659_drc_12 FP call 0.0052 0 0 0 7 hg19 1 187262648.0 18 45405867.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc GALNT2 SMAD2 chr1 230061229 chr18 47879496 BND CALL_659_drc_13 FP call 0.002 0 0 1 7 hg19 1 230196976.0 18 45405867.0 0 1 UNEVALUABLE UNEVALUABLE
659_drc intergenic(ARV1,FAM89A) AR chr1 231004535 chrX 67720909 BND CALL_659_drc_14 FP call 0.0 0 0 6 5 hg19 1 231140281.0 X 66940751.0 0 5 UNEVALUABLE UNEVALUABLE
659_drc SIPA1L2 SMAD2 chr1 232487920 chr18 47879496 BND CALL_659_drc_15 FP call 0.0 0 0 6 7 hg19 1 232623666.0 18 45405867.0 0 6 UNEVALUABLE UNEVALUABLE
659_drc CHRM3 SETD2 chr1 239807819 chr3 47101599 BND CALL_659_drc_16 FP call 0.0 0 0 1 567 hg19 1 239971119.0 3 47143089.0 0 1 UNEVALUABLE UNEVALUABLE
659_drc intergenic(YWHAQ,TAF1B) RRM2 chr2 9777358 chr2 10210520 DEL CALL_659_drc_17 TP call 0.9302 0 0 2 954 hg19 2 9917487.0 2 10350646.0 0 2 UNEVALUABLE UNEVALUABLE
659_drc DRC1 FPGS chr2 26412469 chr9 127813422 BND CALL_659_drc_18 FP call 0.0 0 0 19 3011 hg19 2 26635337.0 9 130575701.0 0 19 UNEVALUABLE UNEVALUABLE
659_drc COMMD1 H2BC7 chr2 61889352 chr6 26199768 BND CALL_659_drc_19 TP call 0.0002 0 0 13 4652 hg19 2 62116487.0 6 26199996.0 0 13 UNEVALUABLE UNEVALUABLE
659_drc intergenic(TACR1,EVA1A) TDRD5 chr2 75287566 chr1 179618622 BND CALL_659_drc_20 FP call 0.0001 0 0 4 439 hg19 2 75514692.0 1 179587757.0 0 4 UNEVALUABLE UNEVALUABLE
659_drc ATOH8 XPO1 chr2 85763857 chr2 61537784 BND CALL_659_drc_21 FP call 0.0 0 0 1257 4 hg19 2 85990980.0 2 61764919.0 0 4 UNEVALUABLE UNEVALUABLE
659_drc intergenic(NCK2,ECRG4) NTRK2 chr2 105930076 chr9 84905276 BND CALL_659_drc_22 FP call 0.0 0 0 3 1 hg19 2 106546532.0 9 87520191.0 0 1 UNEVALUABLE UNEVALUABLE
659_drc intergenic(CNTNAP5,GYPC) ETV6 chr2 125211181 chr12 11895280 BND CALL_659_drc_23 FP call 0.0 0 0 1 0 hg19 2 125968758.0 12 12048214.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc GPR39 FOXP1 chr2 132561578 chr3 70955855 BND CALL_659_drc_24 FP call 0.0001 0 0 6 8 hg19 2 133319151.0 3 71005006.0 0 6 UNEVALUABLE UNEVALUABLE
659_drc intergenic(RBMS1,TANK) AR chr2 160864818 chrX 67695739 BND CALL_659_drc_25 FP call 0.0 0 0 2 9387 hg19 2 161721329.0 X 66915581.0 0 2 UNEVALUABLE UNEVALUABLE
659_drc GPR155 NTRK1 chr2 174441762 chr1 156873019 BND CALL_659_drc_26 FP call 0.0 0 0 110 9224 hg19 2 175306490.0 1 156842811.0 0 110 EVALUABLE BAM_REFUTED
659_drc PDE1A XPO1 chr2 182262992 chr2 61537784 BND CALL_659_drc_27 FP call 0.0 0 0 0 4 hg19 2 183127719.0 2 61764919.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc ERBB4 NTRK1 chr2 211913658 chr1 156873019 BND CALL_659_drc_28 FP call 0.0 0 0 10 9224 hg19 2 212778383.0 1 156842811.0 0 10 UNEVALUABLE UNEVALUABLE
659_drc ABCA12 AR chr2 215064689 chrX 67720909 BND CALL_659_drc_29 FP call 0.0 0 0 329 5 hg19 2 215929412.0 X 66940751.0 0 5 UNEVALUABLE UNEVALUABLE
659_drc CNTN4 NTRK2 chr3 2761473 chr9 84905276 BND CALL_659_drc_30 FP call 0.0 0 0 0 1 hg19 3 2803157.0 9 87520191.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc SRGAP3 AR chr3 9183768 chrX 67720909 BND CALL_659_drc_31 FP call 0.0 0 0 0 5 hg19 3 9225452.0 X 66940751.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc intergenic(TAMM41,SYN2) XPC chr3 11917313 chr3 14156366 BND CALL_659_drc_32 TP call 0.0514 0 0 0 1382 hg19 3 11958787.0 3 14197866.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc intergenic(SYN2,PPARG) DST chr3 12262831 chr6 56618789 BND CALL_659_drc_33 FP call 0.4009 0 0 1 3189 hg19 3 12304330.0 6 56483587.0 0 1 UNEVALUABLE UNEVALUABLE
659_drc XPC NUP210 chr3 14158060 chr3 13356136 BND CALL_659_drc_34 TP_DUP call 0.0001 0 0 3747 12 hg19 3 14199560.0 3 13397636.0 0 12 UNEVALUABLE UNEVALUABLE
659_drc GRIP2 THUMPD3 chr3 14523033 chr3 9371056 BND CALL_659_drc_35 TP_DUP call 0.2022 0 0 451 1329 hg19 3 14564540.0 3 9412740.0 0 451 EVALUABLE BAM_REFUTED
659_drc SETD2 intergenic(PTBP2,DPYD) chr3 47101598 chr1 96935616 BND CALL_659_drc_36 FP call 0.0 0 0 567 1 hg19 3 47143088.0 1 97401172.0 0 1 UNEVALUABLE UNEVALUABLE
659_drc NISCH STAB1 chr3 52473812 chr3 52506413 BND CALL_659_drc_37 FP call 0.0001 0 0 345 1845 hg19 3 52507828.0 3 52540429.0 0 345 EVALUABLE BAM_REFUTED
659_drc GSK3B CDK6 chr3 119824359 chr7 92614697 BND CALL_659_drc_38 FP call 0.0001 0 0 0 1547 hg19 3 119543206.0 7 92244011.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc MYLK MALRD1 chr3 123657419 chr10 19761786 BND CALL_659_drc_39 FP call 0.0001 0 0 1325 32 hg19 3 123376266.0 10 20050715.0 0 32 EVALUABLE BAM_REFUTED
659_drc intergenic(BCHE,ZBBX) XPO1 chr3 166144686 chr2 61537784 BND CALL_659_drc_40 FP call 0.0 0 0 0 4 hg19 3 165862474.0 2 61764919.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc NAALADL2 XPO1 chr3 175360849 chr2 61537784 BND CALL_659_drc_41 FP call 0.0 0 0 0 4 hg19 3 175078638.0 2 61764919.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc intergenic(GPR78,HMX1) PDGFRA chr4 8775366 chr4 54296688 DUP CALL_659_drc_42 FP call 0.0 0 0 4 0 hg19 4 8777092.0 4 55162855.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc intergenic(IGFBP7,ADGRL3) PAX3 chr4 60705196 chr2 222212656 BND CALL_659_drc_43 FP call 0.0 0 0 2 10838 hg19 4 61570914.0 2 223077375.0 0 2 UNEVALUABLE UNEVALUABLE
659_drc UGT2B7 OR2V1 chr4 69082642 chr5 181124991 BND CALL_659_drc_44 FP call 0.1748 0 0 0 3681 hg19 4 69948360.0 5 180551991.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc intergenic(UTP3,RUFY3) TRIM10 chr4 70699496 chr6 30160644 BND CALL_659_drc_45 TP call 0.8135 0 0 12 2145 hg19 4 71565213.0 6 30128421.0 0 12 UNEVALUABLE UNEVALUABLE
659_drc PTPN13 SELENOF chr4 86707195 chr1 86868075 BND CALL_659_drc_46 FP call 0.0015 0 0 0 218 hg19 4 87628348.0 1 87333758.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc intergenic(ADH7,C4orf17) SETD2 chr4 99467180 chr3 47101598 BND CALL_659_drc_47 FP call 0.0 0 0 2 567 hg19 4 100388337.0 3 47143088.0 0 2 UNEVALUABLE UNEVALUABLE
659_drc intergenic(LEF1,RPL34) AR chr4 108477121 chrX 67720909 BND CALL_659_drc_48 FP call 0.0 0 0 0 5 hg19 4 109398277.0 X 66940751.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc OTUD4 intergenic(DOK5,CBLN4) chr4 145150902 chr20 55319709 BND CALL_659_drc_49 FP call 0.0002 0 0 750 11 hg19 4 146072054.0 20 53936248.0 0 11 UNEVALUABLE UNEVALUABLE
659_drc FHDC1 DPYSL3 chr4 152963034 chr5 147403179 BND CALL_659_drc_50 FP call 0.0004 0 0 871 1 hg19 4 153884186.0 5 146782742.0 0 1 UNEVALUABLE UNEVALUABLE
659_drc IRX2 RIPOR3 chr5 2748644 chr20 50629676 BND CALL_659_drc_51 FP call 0.0002 0 0 3173 5 hg19 5 2748758.0 20 49246213.0 0 5 UNEVALUABLE UNEVALUABLE
659_drc SGTB XPO1 chr5 65707396 chr2 61537784 BND CALL_659_drc_52 FP call 0.0 0 0 4 4 hg19 5 65003223.0 2 61764919.0 0 4 UNEVALUABLE UNEVALUABLE
659_drc PIK3R1 WNT7A chr5 68293792 chr3 13863657 BND CALL_659_drc_53 FP call 0.0 0 0 2359 2 hg19 5 67589620.0 3 13905154.0 0 2 UNEVALUABLE UNEVALUABLE
659_drc intergenic(COX7C,RASA1) XPO1 chr5 86950590 chr2 61537784 BND CALL_659_drc_54 FP call 0.0 0 0 0 4 hg19 5 86246407.0 2 61764919.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc FER XPO1 chr5 109165639 chr2 61537784 BND CALL_659_drc_55 FP call 0.0 0 0 1 4 hg19 5 108501340.0 2 61764919.0 0 1 UNEVALUABLE UNEVALUABLE
659_drc ENSG00000258864 MCC chr5 112830051 chr5 113058592 DUP CALL_659_drc_56 FP call 0.0033 0 0 1 0 hg19 5 112165748.0 5 112394289.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc COMMD10 NRG1 chr5 116096836 chr8 32690067 BND CALL_659_drc_57 FP call 0.0 0 0 1 0 hg19 5 115432533.0 8 32547585.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc SLC22A4 LRRC4C chr5 132334860 chr11 41241445 BND CALL_659_drc_58 FP call 0.0004 0 0 543 0 hg19 5 131670553.0 11 41262995.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc C5orf24 intergenic(GOLGA8B,GJD2) chr5 134855051 chr15 34687775 BND CALL_659_drc_59 FP call 0.2887 0 0 2580 3 hg19 5 134190741.0 15 34979976.0 0 3 UNEVALUABLE UNEVALUABLE
659_drc intergenic(HSPA9,CTNNA1) GIGYF2 chr5 138594233 chr2 232844221 BND CALL_659_drc_60 FP call 0.0 0 0 0 1102 hg19 5 137929922.0 2 233708931.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc intergenic(IL12B,ADRA1B) OR52E2 chr5 159381377 chr11 5058980 BND CALL_659_drc_61 FP call 0.0008 0 0 1 2576 hg19 5 158808385.0 11 5080210.0 0 1 UNEVALUABLE UNEVALUABLE
659_drc intergenic(PDLIM7,DOK3) SLC36A2 chr5 177498779 chr5 151339080 BND CALL_659_drc_62 FP call 0.0003 0 0 4 343 hg19 5 176925780.0 5 150718641.0 0 4 UNEVALUABLE UNEVALUABLE
659_drc HIVEP1 SLC16A12 chr6 12120751 chr10 89435660 BND CALL_659_drc_63 FP call 0.0001 0 0 2750 920 hg19 6 12120984.0 10 91195417.0 0 920 EVALUABLE BAM_REFUTED
659_drc CDKAL1 CPNE9 chr6 20625788 chr3 9729519 BND CALL_659_drc_64 FP call 0.8539 0 0 0 1014 hg19 6 20626019.0 3 9771203.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc intergenic(HLA-G,HLA-A) HLA-A chr6 29893388 chr6 29948162 DEL CALL_659_drc_65 FP call 0.0 0 0 0 2 hg19 6 29861165.0 6 29915939.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc GLO1 RBM12 chr6 38699023 chr20 35654964 BND CALL_659_drc_66 FP call 0.0023 0 0 0 3717 hg19 6 38666799.0 20 34242886.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc intergenic(KCNK5,KCNK17) DNAH8 chr6 39293459 chr6 38938012 BND CALL_659_drc_67 TP_DUP call 0.9691 0 0 0 1184 hg19 6 39261235.0 6 38905788.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc SENP6 ERO1B chr6 75608202 chr1 236230248 BND CALL_659_drc_68 FP call 0.0 0 0 0 188 hg19 6 76317918.0 1 236393548.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc CASP8AP2 MAX chr6 89845298 chr14 65102491 BND CALL_659_drc_69 FP call 0.0001 0 0 10 4754 hg19 6 90555017.0 14 65569209.0 0 10 UNEVALUABLE UNEVALUABLE
659_drc BEND3 intergenic(ZNF217,BCAS1) chr6 107070171 chr20 53769248 BND CALL_659_drc_70 FP call 0.9356 0 0 4456 5 hg19 6 107391375.0 20 52385787.0 0 5 UNEVALUABLE UNEVALUABLE
659_drc MICAL1 FHOD3 chr6 109446309 chr18 36744911 BND CALL_659_drc_71 TP call 0.994 0 0 2716 17 hg19 6 109767512.0 18 34324874.0 0 17 UNEVALUABLE UNEVALUABLE
659_drc TSPYL4 CYP39A1 chr6 116253435 chr6 46574904 BND CALL_659_drc_72 FP call 0.0 0 0 4438 0 hg19 6 116574598.0 6 46542641.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc intergenic(TRDN,NKAIN2) NTRK3 chr6 123748369 chr15 87987526 BND CALL_659_drc_73 FP call 0.0 0 0 6 1 hg19 6 124069514.0 15 88530757.0 0 1 UNEVALUABLE UNEVALUABLE
659_drc QKI UHRF1 chr6 163563775 chr19 4913359 BND CALL_659_drc_74 FP call 0.0 0 0 7189 9 hg19 6 163984807.0 19 4913371.0 0 9 UNEVALUABLE UNEVALUABLE
659_drc USP42 GRID2IP chr7 6154645 chr7 6501898 DUP CALL_659_drc_75 FP call 0.0022 0 0 5098 903 hg19 7 6194276.0 7 6541529.0 0 903 EVALUABLE BAM_REFUTED
659_drc intergenic(JAZF1,CREB5) NTRK1 chr7 28226898 chr1 156873019 BND CALL_659_drc_76 FP call 0.0 0 0 8 9224 hg19 7 28266517.0 1 156842811.0 0 8 UNEVALUABLE UNEVALUABLE
659_drc AOAH intergenic(RESF1,BICD1) chr7 36514528 chr12 32085324 BND CALL_659_drc_77 FP call 0.0001 0 0 476 5 hg19 7 36554134.0 12 32238258.0 0 5 UNEVALUABLE UNEVALUABLE
659_drc intergenic(INHBA,GLI3) NRG1 chr7 41866637 chr8 32644882 BND CALL_659_drc_78 FP call 0.0 0 0 0 0 hg19 7 41906235.0 8 32502401.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc HECW1 intergenic(C21orf62,OLIG2) chr7 43445300 chr21 33018264 BND CALL_659_drc_79 FP call 0.0011 0 0 3361 12 hg19 7 43484899.0 21 34390572.0 0 12 UNEVALUABLE UNEVALUABLE
659_drc MAGI2 ANKRD17 chr7 78236275 chr4 73102497 BND CALL_659_drc_80 FP call 0.0267 0 0 0 645 hg19 7 77865592.0 4 73968214.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc intergenic(BET1,COL1A2) NTRK3 chr7 94195312 chr15 87987526 BND CALL_659_drc_81 FP call 0.0 0 0 1 1 hg19 7 93824624.0 15 88530757.0 0 1 UNEVALUABLE UNEVALUABLE
659_drc SPDYE2 XPO1 chr7 102557381 chr2 61537784 BND CALL_659_drc_82 FP call 0.0 0 0 239 4 hg19 7 102197828.0 2 61764919.0 0 4 UNEVALUABLE UNEVALUABLE
659_drc intergenic(PTN,DGKI) SETD2 chr7 137376024 chr3 47101598 BND CALL_659_drc_83 FP call 0.0003 0 0 4 567 hg19 7 137060770.0 3 47143088.0 0 4 UNEVALUABLE UNEVALUABLE
659_drc DGKI FGFR1 chr7 137620013 chr8 38442363 BND CALL_659_drc_84 FP call 0.0 0 0 439 0 hg19 7 137304759.0 8 38299881.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc RAB19 BRAF chr7 140407005 chr7 140899223 DUP CALL_659_drc_85 FP call 0.0016 0 0 18 1 hg19 7 140106805.0 7 140599023.0 0 1 UNEVALUABLE UNEVALUABLE
659_drc intergenic(NOBOX,TPK1) AR chr7 144416271 chrX 67695739 BND CALL_659_drc_86 FP call 0.0 0 0 3 9387 hg19 7 144113364.0 X 66915581.0 0 3 UNEVALUABLE UNEVALUABLE
659_drc CNTNAP2 AR chr7 148340010 chrX 67720909 BND CALL_659_drc_87 FP call 0.0 0 0 2 5 hg19 7 148037102.0 X 66940751.0 0 2 UNEVALUABLE UNEVALUABLE
659_drc FGFR1 ANK1 chr8 38407424 chr8 41686354 DEL CALL_659_drc_88 TP call 0.9964 0 0 642 975 hg19 8 38264942.0 8 41543872.0 0 642 EVALUABLE BAM_REFUTED
659_drc intergenic(CSMD3,TRPS1) FOXP1 chr8 115112758 chr3 70955856 BND CALL_659_drc_89 FP call 0.0 0 0 0 8 hg19 8 116124987.0 3 71005007.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc intergenic(PCSK5,RFK) NTRK3 chr9 76371694 chr15 88059050 BND CALL_659_drc_90 FP call 0.0 0 0 18 1 hg19 9 78986610.0 15 88602281.0 0 1 UNEVALUABLE UNEVALUABLE
659_drc CENPP BARD1 chr9 92338494 chr2 214728409 BND CALL_659_drc_91 FP call 0.0 0 0 0 2414 hg19 9 95100776.0 2 215593133.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc intergenic(SEC61B,NR4A3) NUP210L chr9 99483735 chr1 154029945 BND CALL_659_drc_92 FP call 0.0003 0 0 0 516 hg19 9 102246017.0 1 154002421.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc intergenic(KLF4,ACTL7B) MKRN3 chr9 107690290 chr15 23566161 BND CALL_659_drc_93 FP call 0.0006 0 0 0 3671 hg19 9 110452571.0 15 23811308.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc PFKFB3 RUNX1 chr10 6156130 chr21 34789585 BND CALL_659_drc_94 FP call 0.0 0 0 13 0 hg19 10 6198093.0 21 36161882.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc NEBL intergenic(SMR3B,OPRPN) chr10 20840820 chr4 70394040 BND CALL_659_drc_95 FP call 0.0004 0 0 409 0 hg19 10 21129749.0 4 71259757.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc intergenic(ZWINT,IPMK) TENT5C chr10 56571864 chr1 117627845 BND CALL_659_drc_96 FP call 0.0 0 0 2 1 hg19 10 58331624.0 1 118170467.0 0 1 UNEVALUABLE UNEVALUABLE
659_drc NRG3 PAX3 chr10 82109578 chr2 222212656 BND CALL_659_drc_97 FP call 0.0 0 0 4 10838 hg19 10 83869334.0 2 223077375.0 0 4 UNEVALUABLE UNEVALUABLE
659_drc LIPM intergenic(FMO2,FMO1) chr10 88813223 chr1 171215037 BND CALL_659_drc_98 FP call 0.0001 0 0 801 0 hg19 10 90572980.0 1 171184176.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc CC2D2B GSK3B chr10 95993943 chr3 119824359 BND CALL_659_drc_99 FP call 0.0 0 0 3 0 hg19 10 97753700.0 3 119543206.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc HPSE2 AR chr10 99232215 chrX 67720909 BND CALL_659_drc_100 FP call 0.0 0 0 799 5 hg19 10 100991972.0 X 66940751.0 0 5 UNEVALUABLE UNEVALUABLE
659_drc intergenic(MRPL23,IGF2) SMAD2 chr11 1991551 chr18 47879497 BND CALL_659_drc_101 FP call 0.0011 0 0 6 7 hg19 11 2012781.0 18 45405868.0 0 6 UNEVALUABLE UNEVALUABLE
659_drc OR51B5 ATRX chr11 5332570 chrX 77633916 BND CALL_659_drc_102 FP call 0.0 0 0 16 1514 hg19 11 5353800.0 X 76889404.0 0 16 UNEVALUABLE UNEVALUABLE
659_drc NAV2 NTRK2 chr11 20100592 chr9 84905276 BND CALL_659_drc_103 FP call 0.0 0 0 624 1 hg19 11 20122138.0 9 87520191.0 0 1 UNEVALUABLE UNEVALUABLE
659_drc intergenic(METTL15,KCNA4) ETV1 chr11 29107863 chr7 13932070 BND CALL_659_drc_104 FP call 0.0 0 0 4 2585 hg19 11 29129410.0 7 13971695.0 0 4 UNEVALUABLE UNEVALUABLE
659_drc NRXN2 MEOX2 chr11 64671222 chr7 15686265 BND CALL_659_drc_105 FP call 0.0 0 0 1 3037 hg19 11 64438694.0 7 15725890.0 0 1 UNEVALUABLE UNEVALUABLE
659_drc AMOTL1 SETD2 chr11 94873777 chr3 47101598 BND CALL_659_drc_106 FP call 0.0 0 0 1 567 hg19 11 94606942.0 3 47143088.0 0 1 UNEVALUABLE UNEVALUABLE
659_drc intergenic(MMP20,MMP27) XPO1 chr11 102659834 chr2 61537784 BND CALL_659_drc_107 FP call 0.0 0 0 0 4 hg19 11 102530565.0 2 61764919.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc intergenic(B3GAT1,.) NKX2-1 chr11 134434851 chr14 36520279 BND CALL_659_drc_108 FP call 0.0 0 0 11 5368 hg19 11 134304745.0 14 36989484.0 0 11 UNEVALUABLE UNEVALUABLE
659_drc PIK3C2G ZBTB41 chr12 18471098 chr1 197199788 BND CALL_659_drc_109 FP call 0.0001 0 0 0 3122 hg19 12 18624032.0 1 197168918.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc intergenic(ATP2B1,CCER1) SETD2 chr12 90367932 chr3 47101598 BND CALL_659_drc_110 FP call 0.0 0 0 1 567 hg19 12 90761709.0 3 47143088.0 0 1 UNEVALUABLE UNEVALUABLE
659_drc MYBPC1 NTRK2 chr12 101606204 chr9 84905276 BND CALL_659_drc_111 FP call 0.0 0 0 6 1 hg19 12 101999982.0 9 87520191.0 0 1 UNEVALUABLE UNEVALUABLE
659_drc intergenic(PPP1CC,CCDC63) NCOA3 chr12 110811440 chr20 47654849 BND CALL_659_drc_112 FP call 0.0003 0 0 10 0 hg19 12 111249244.0 20 46283593.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc TAOK3 PAX3 chr12 118189536 chr2 222212656 BND CALL_659_drc_113 FP call 0.0 0 0 840 10838 hg19 12 118627341.0 2 223077375.0 0 840 EVALUABLE BAM_REFUTED
659_drc TAOK3 CNTLN chr12 118201399 chr9 17387121 BND CALL_659_drc_114 FP call 0.0001 0 0 786 0 hg19 12 118639204.0 9 17387119.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc ATP8A2 SMAD2 chr13 25435972 chr18 47879496 BND CALL_659_drc_115 FP call 0.0005 0 0 1 7 hg19 13 26010110.0 18 45405867.0 0 1 UNEVALUABLE UNEVALUABLE
659_drc MTUS2 NTRK1 chr13 28844624 chr1 156873019 BND CALL_659_drc_116 FP call 0.0 0 0 1 9224 hg19 13 29418761.0 1 156842811.0 0 1 UNEVALUABLE UNEVALUABLE
659_drc intergenic(PCDH9,KLHL1) TENT5C chr13 67711479 chr1 117627845 BND CALL_659_drc_117 FP call 0.0 0 0 0 1 hg19 13 68285611.0 1 118170467.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc LMO7 MYCBP2 chr13 75842876 chr13 77233086 DEL CALL_659_drc_118 FP call 0.0037 0 0 211 445 hg19 13 76417012.0 13 77807221.0 0 211 EVALUABLE BAM_REFUTED
659_drc NALCN AR chr13 101286865 chrX 67720909 BND CALL_659_drc_119 FP call 0.0 0 0 2 5 hg19 13 101939216.0 X 66940751.0 0 2 UNEVALUABLE UNEVALUABLE
659_drc ITGBL1 SMAD2 chr13 101588326 chr18 47879496 BND CALL_659_drc_120 FP call 0.0007 0 0 0 7 hg19 13 102240676.0 18 45405867.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc MAX intergenic(TMED7,CDO1) chr14 65102495 chr5 115640255 BND CALL_659_drc_121 FP call 0.0 0 0 4754 3 hg19 14 65569213.0 5 114975952.0 0 3 UNEVALUABLE UNEVALUABLE
659_drc SERPINA3 intergenic(GSC,DICER1) chr14 94619215 chr14 95066392 DEL CALL_659_drc_122 FP call 0.0 0 0 1160 2 hg19 14 95085552.0 14 95532729.0 0 2 UNEVALUABLE UNEVALUABLE
659_drc intergenic(ENSG00000214265,UBE3A) TOP2A chr15 25206804 chr17 40399055 BND CALL_659_drc_123 FP call 0.0 0 0 2 3805 hg19 15 25451951.0 17 38555307.0 0 2 UNEVALUABLE UNEVALUABLE
659_drc APBA2 AR chr15 29055711 chrX 67701710 BND CALL_659_drc_124 FP call 0.0 0 0 20 2 hg19 15 29347914.0 X 66921552.0 0 2 UNEVALUABLE UNEVALUABLE
659_drc MEIS2 CHEK2 chr15 37078697 chr22 28687820 BND CALL_659_drc_125 FP call 0.0 0 0 3 1443 hg19 15 37370898.0 22 29083808.0 0 3 UNEVALUABLE UNEVALUABLE
659_drc WDR72 SMAD2 chr15 53701560 chr18 47879496 BND CALL_659_drc_126 FP call 0.0056 0 0 48 7 hg19 15 53993757.0 18 45405867.0 0 7 UNEVALUABLE UNEVALUABLE
659_drc MYO1E USP3 chr15 59202336 chr15 63553778 BND CALL_659_drc_127 FP call 0.0176 0 0 383 561 hg19 15 59494535.0 15 63845977.0 0 383 EVALUABLE BAM_REFUTED
659_drc THSD4 TMC7 chr15 71256932 chr16 19059423 BND CALL_659_drc_128 FP call 0.0 0 0 705 1435 hg19 15 71549271.0 16 19070745.0 0 705 EVALUABLE BAM_REFUTED
659_drc PSTPIP1 FBXL7 chr15 77018156 chr5 15601435 BND CALL_659_drc_129 FP call 0.0 0 0 1156 0 hg19 15 77310497.0 5 15601544.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc intergenic(CHRNB4,ADAMTS7) SIN3A chr15 78739851 chr15 75394752 BND CALL_659_drc_130 FP call 0.0138 0 0 204 619 hg19 15 79032193.0 15 75687093.0 0 204 EVALUABLE BAM_REFUTED
659_drc ZNF710 IDH2 chr15 90078864 chr15 90083939 BND CALL_659_drc_131 FP call 0.0001 0 0 0 1240 hg19 15 90622096.0 15 90627171.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc SYNM ENSG00000288645 chr15 99132343 chr15 50650793 BND CALL_659_drc_132 TP_DUP call 0.6037 0 0 5396 8 hg19 15 99672548.0 15 50942990.0 0 8 UNEVALUABLE UNEVALUABLE
659_drc TFAP4 AR chr16 4273003 chrX 67720909 BND CALL_659_drc_133 FP call 0.0 0 0 371 5 hg19 16 4323004.0 X 66940751.0 0 5 UNEVALUABLE UNEVALUABLE
659_drc intergenic(SLC5A11,ARHGAP17) SETD2 chr16 24916819 chr3 47101598 BND CALL_659_drc_134 FP call 0.0 0 0 10 567 hg19 16 24928140.0 3 47143088.0 0 10 UNEVALUABLE UNEVALUABLE
659_drc SNTB2 intergenic(HNRNPA1L3,TOX3) chr16 69245636 chr16 51678226 BND CALL_659_drc_135 FP call 0.0 0 0 858 0 hg19 16 69279539.0 16 51712137.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc METTL16 PTCH1 chr17 2443423 chr9 95444170 BND CALL_659_drc_136 FP call 0.0 0 0 9 0 hg19 17 2346717.0 9 98206452.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc RAP1GAP2 PPARG chr17 2931377 chr3 12298488 BND CALL_659_drc_137 FP call 0.0 0 0 2 12 hg19 17 2834671.0 3 12339987.0 0 2 UNEVALUABLE UNEVALUABLE
659_drc TP53 WRAP53 chr17 7685067 chr17 7696235 DEL CALL_659_drc_138 FP call 0.0 0 0 0 9 hg19 17 7588385.0 17 7599553.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc SHISA6 SETD2 chr17 11481367 chr3 47101598 BND CALL_659_drc_139 FP call 0.0003 0 0 7 567 hg19 17 11384684.0 3 47143088.0 0 7 UNEVALUABLE UNEVALUABLE
659_drc LRRC75A FLCN chr17 16480724 chr17 17217235 DEL CALL_659_drc_140 FP call 0.0 0 0 38 1031 hg19 17 16384038.0 17 17120549.0 0 38 EVALUABLE BAM_REFUTED
659_drc ZNF287 intergenic(MFAP4,RNF112) chr17 16553302 chr17 19401727 DEL CALL_659_drc_141 FP call 0.0006 0 0 1556 6 hg19 17 16456616.0 17 19305040.0 0 6 UNEVALUABLE UNEVALUABLE
659_drc intergenic(GOSR1,CRLF3) UGT2B10 chr17 30689919 chr4 68816584 BND CALL_659_drc_142 FP call 0.083 0 0 2 3040 hg19 17 29016937.0 4 69682302.0 0 2 UNEVALUABLE UNEVALUABLE
659_drc ATAD5 ZFPM2 chr17 30887207 chr8 105403315 BND CALL_659_drc_143 FP call 0.9949 0 0 601 0 hg19 17 29214225.0 8 106415543.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc FBXO47 intergenic(CDK12,NEUROD2) chr17 38962983 chr17 39579494 DEL CALL_659_drc_144 TP call 0.0008 0 0 445 0 hg19 17 37119236.0 17 37735747.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc IKZF3 CDKL2 chr17 39766327 chr4 75626158 BND CALL_659_drc_145 FP call 0.0052 0 0 2463 474 hg19 17 37922580.0 4 76551342.0 0 474 EVALUABLE BAM_REFUTED
659_drc BRCA1 ATR chr17 43090934 chr3 142553434 BND CALL_659_drc_146 FP call 0.0 0 0 8364 3962 hg19 17 41242951.0 3 142272276.0 0 3962 EVALUABLE BAM_REFUTED
659_drc CA10 AR chr17 51759390 chrX 67720909 BND CALL_659_drc_147 FP call 0.0 0 0 0 5 hg19 17 49836750.0 X 66940751.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc intergenic(MED13,EFCAB3) NTRK2 chr17 62133284 chr9 84905276 BND CALL_659_drc_148 FP call 0.0 0 0 22 1 hg19 17 60210645.0 9 87520191.0 0 1 UNEVALUABLE UNEVALUABLE
659_drc TANC2 SMAD2 chr17 63222721 chr18 47879496 BND CALL_659_drc_149 FP call 0.0006 0 0 0 7 hg19 17 61300082.0 18 45405867.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc intergenic(SUMO2,NUP85) TMEM94 chr17 75202634 chr17 75492624 DUP CALL_659_drc_150 FP call 0.3451 0 0 17 2193 hg19 17 73198729.0 17 73488705.0 0 17 UNEVALUABLE UNEVALUABLE
659_drc intergenic(GRB2,TMEM94) ETV6 chr17 75424229 chr12 11773209 BND CALL_659_drc_151 FP call 0.0 0 0 12 10 hg19 17 73420310.0 12 11926143.0 0 10 UNEVALUABLE UNEVALUABLE
659_drc L3MBTL4 EPHB1 chr18 6328512 chr3 134795417 BND CALL_659_drc_152 FP call 0.0 0 0 0 1359 hg19 18 6328511.0 3 134514259.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc intergenic(CDH2,DSC3) RUNX1 chr18 29478915 chr21 35659137 BND CALL_659_drc_153 FP call 0.0 0 0 8 6 hg19 18 27058880.0 21 37031435.0 0 6 UNEVALUABLE UNEVALUABLE
659_drc MAPRE2 CDK12 chr18 35132108 chr17 39547794 BND CALL_659_drc_154 FP call 0.1135 0 0 652 4 hg19 18 32712072.0 17 37704047.0 0 4 UNEVALUABLE UNEVALUABLE
659_drc CNDP2 PTGFR chr18 74510927 chr1 78378604 BND CALL_659_drc_155 FP call 0.0 0 0 708 2 hg19 18 72178162.0 1 78844289.0 0 2 UNEVALUABLE UNEVALUABLE
659_drc ZNF407 AR chr18 75041623 chrX 67710038 BND CALL_659_drc_156 FP call 0.0 0 0 1 0 hg19 18 72753579.0 X 66929880.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc intergenic(GALR1,SALL3) AR chr18 77549920 chrX 67701710 BND CALL_659_drc_157 FP call 0.0 0 0 3 2 hg19 18 75261876.0 X 66921552.0 0 2 UNEVALUABLE UNEVALUABLE
659_drc MIER2 PRKACB chr19 311917 chr1 84193606 BND CALL_659_drc_158 FP call 0.0 0 0 1066 0 hg19 19 311917.0 1 84659289.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc intergenic(DENND1C,TUBB4A) PAX8 chr19 6482634 chr2 113233271 BND CALL_659_drc_159 FP call 0.0 0 0 12 11 hg19 19 6482645.0 2 113990848.0 0 11 UNEVALUABLE UNEVALUABLE
659_drc DNMT1 PDE4A chr19 10163540 chr19 10432552 DUP CALL_659_drc_160 FP call 0.7815 0 0 409 905 hg19 19 10274216.0 19 10543228.0 0 409 EVALUABLE BAM_REFUTED
659_drc CEACAM6 AR chr19 41756454 chrX 67720909 BND CALL_659_drc_161 FP call 0.0 0 0 2728 5 hg19 19 42260362.0 X 66940751.0 0 5 UNEVALUABLE UNEVALUABLE
659_drc RELB NCOA3 chr19 45011798 chr20 47654849 BND CALL_659_drc_162 FP call 0.0 0 0 1135 0 hg19 19 45515056.0 20 46283593.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc intergenic(BMP2,HAO1) PIK3C3 chr20 7371958 chr18 42027489 BND CALL_659_drc_163 FP call 0.0012 0 0 0 327 hg19 20 7352605.0 18 39607453.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc XRN2 intergenic(SV2B,SLCO3A1) chr20 21389321 chr15 91635006 BND CALL_659_drc_164 FP call 0.0467 0 0 485 0 hg19 20 21369959.0 15 92178236.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc intergenic(PAX1,FOXA2) TMPRSS2 chr20 21804008 chr21 41485112 BND CALL_659_drc_165 FP call 0.0 0 0 2 10 hg19 20 21784646.0 21 42857039.0 0 2 UNEVALUABLE UNEVALUABLE
659_drc intergenic(PAX1,FOXA2) YTHDC1 chr20 22398853 chr4 68337183 BND CALL_659_drc_166 FP call 0.5245 0 0 1 2330 hg19 20 22379491.0 4 69202901.0 0 1 UNEVALUABLE UNEVALUABLE
659_drc C20orf173 intergenic(RBL1,MROH8) chr20 35529100 chr20 37100044 DUP CALL_659_drc_167 FP call 0.0022 0 0 2037 12 hg19 20 34116929.0 20 35728447.0 0 12 UNEVALUABLE UNEVALUABLE
659_drc MROH8 intergenic(OR4A5,TRIM48) chr20 37155167 chr11 55256187 BND CALL_659_drc_168 FP call 0.0 0 0 394 2 hg19 20 35783570.0 11 55023663.0 0 2 UNEVALUABLE UNEVALUABLE
659_drc intergenic(DOK5,CBLN4) FRAS1 chr20 54663120 chr4 78448103 BND CALL_659_drc_169 FP call 0.9657 0 0 0 920 hg19 20 53279659.0 4 79369257.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc intergenic(DOK5,CBLN4) MC3R chr20 55022610 chr20 56249215 DUP CALL_659_drc_170 FP call 0.0045 0 0 2 3696 hg19 20 53639149.0 20 54824271.0 0 2 UNEVALUABLE UNEVALUABLE
659_drc RAE1 RBM38 chr20 57374764 chr20 57398115 BND CALL_659_drc_171 FP call 0.058 0 0 909 1 hg19 20 55949820.0 20 55973171.0 0 1 UNEVALUABLE UNEVALUABLE
659_drc TMPRSS15 AR chr21 18372139 chrX 67701710 BND CALL_659_drc_172 FP call 0.0 0 0 731 2 hg19 21 19744456.0 X 66921552.0 0 2 UNEVALUABLE UNEVALUABLE
659_drc ITSN1 DDX3X chr21 33727926 chrX 41349929 BND CALL_659_drc_173 FP call 0.0 0 0 14 0 hg19 21 35100231.0 X 41209182.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc ITSN1 FOXP1 chr21 33878046 chr3 70955856 BND CALL_659_drc_174 FP call 0.0 0 0 2 8 hg19 21 35250350.0 3 71005007.0 0 2 UNEVALUABLE UNEVALUABLE
659_drc CRKL FAF1 chr22 20950329 chr1 50816192 BND CALL_659_drc_175 FP call 0.0 0 0 1302 25 hg19 22 21304617.0 1 51281864.0 0 25 EVALUABLE BAM_REFUTED
659_drc LARGE1 NTRK3 chr22 33574687 chr15 88059051 BND CALL_659_drc_176 FP call 0.0 0 0 2 1 hg19 22 33970673.0 15 88602282.0 0 1 UNEVALUABLE UNEVALUABLE
659_drc intergenic(FAM9C,ATXN3L) TLR8 chrX 13272001 chrX 12919863 BND CALL_659_drc_177 FP call 0.0003 0 0 2 2907 hg19 X 13290120.0 X 12937982.0 0 2 UNEVALUABLE UNEVALUABLE
659_drc GRIPAP1 intergenic(INHBA,GLI3) chrX 48987955 chr7 41710918 BND CALL_659_drc_178 FP call 0.0248 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_drc intergenic(AR,OPHN1) AR chrX 67730650 chrX 67730546 BND CALL_659_drc_179 FP call 0.0 0 0 1 1 hg19 X 66950492.0 X 66950388.0 0 1 UNEVALUABLE UNEVALUABLE
659_drc OPHN1 SMAD2 chrX 68090275 chr18 47879496 BND CALL_659_drc_180 FP call 0.0001 0 0 7 7 hg19 X 67310117.0 18 45405867.0 0 7 UNEVALUABLE UNEVALUABLE
659_drc intergenic(CXCR3,ENSG00000283599) XPO1 chrX 71647750 chr2 61537784 BND CALL_659_drc_181 FP call 0.0 0 0 3 4 hg19 X 70867600.0 2 61764919.0 0 3 UNEVALUABLE UNEVALUABLE
659_drc intergenic(CT83,KLHL13) XPO1 chrX 117435111 chr2 61537784 BND CALL_659_drc_182 FP call 0.0 0 0 0 4 hg19 X 116569074.0 2 61764919.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc ZIC3 FAM149A chrX 137567367 chr4 186171777 BND CALL_659_drc_183 TP_DUP call 0.0037 0 0 5687 390 hg19 X 136649526.0 4 187092931.0 0 390 EVALUABLE BAM_REFUTED
659_drc intergenic(ZMYM1,SFPQ) PRAG1 chr1 35120082 chr8 8328160 TRANSLOCATION TRUTH_659_drc_184 TRUTH truth 26.0 0 0 0 3270 hg19 1 35585683.0 8 8185676.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc ENSG00000287856 TSG101 chr1 231396199 chr11 18481656 TRANSLOCATION TRUTH_659_drc_185 TRUTH truth 27.0 0 0 30 2076 hg19 1 231531945.0 11 18503203.0 0 30 EVALUABLE BAM_REFUTED
659_drc intergenic(YWHAQ,TAF1B) RRM2 chr2 9777357 chr2 10210519 DELETION TRUTH_659_drc_186 TRUTH truth 62.0 0 0 2 954 hg19 2 9917486.0 2 10350645.0 0 2 UNEVALUABLE UNEVALUABLE
659_drc COMMD1 H2BC7 chr2 61889351 chr6 26199767 TRANSLOCATION TRUTH_659_drc_187 TRUTH truth 70.0 0 0 13 4655 hg19 2 62116486.0 6 26199995.0 0 13 UNEVALUABLE UNEVALUABLE
659_drc intergenic(BOK,THAP4) HERC2 chr2 241584083 chr15 28229503 TRANSLOCATION TRUTH_659_drc_188 TRUTH truth 55.0 0 0 278 4261 hg19 2 242523498.0 15 28474649.0 0 278 EVALUABLE BAM_REFUTED
659_drc THUMPD3 GRIP2 chr3 9371053 chr3 14523032 INVERSION TRUTH_659_drc_189 TRUTH truth 36.0 0 0 1328 450 hg19 3 9412737.0 3 14564539.0 0 450 EVALUABLE BAM_REFUTED
659_drc intergenic(TAMM41,SYN2) XPC chr3 11917312 chr3 14156365 INVERSION TRUTH_659_drc_190 TRUTH truth 46.0 0 0 0 1382 hg19 3 11958786.0 3 14197865.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc NUP210 XPC chr3 13356141 chr3 14158058 INVERSION TRUTH_659_drc_191 TRUTH truth 46.0 0 0 13 3734 hg19 3 13397641.0 3 14199558.0 0 13 UNEVALUABLE UNEVALUABLE
659_drc intergenic(UTP3,RUFY3) TRIM10 chr4 70699495 chr6 30160643 TRANSLOCATION TRUTH_659_drc_192 TRUTH truth 104.0 0 0 12 2145 hg19 4 71565212.0 6 30128420.0 0 12 UNEVALUABLE UNEVALUABLE
659_drc ANKRD50 TPK1 chr4 124670863 chr7 144620806 TRANSLOCATION TRUTH_659_drc_193 TRUTH truth 27.0 0 0 4297 0 hg19 4 125592018.0 7 144317899.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc FAM149A ZIC3 chr4 186171776 chrX 137567366 TRANSLOCATION TRUTH_659_drc_194 TRUTH truth 196.0 0 0 390 5702 hg19 4 187092930.0 X 136649525.0 0 390 EVALUABLE BAM_REFUTED
659_drc DNAH8 intergenic(KCNK5,KCNK17) chr6 38938009 chr6 39293460 INVERSION TRUTH_659_drc_195 TRUTH truth 86.0 0 0 1184 0 hg19 6 38905785.0 6 39261236.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc MICAL1 FHOD3 chr6 109446308 chr18 36744910 TRANSLOCATION TRUTH_659_drc_196 TRUTH truth 663.0 0 0 2721 17 hg19 6 109767511.0 18 34324873.0 0 17 UNEVALUABLE UNEVALUABLE
659_drc REV3L intergenic(PHETA1,SH2B3) chr6 111374282 chr12 111390207 TRANSLOCATION TRUTH_659_drc_197 TRUTH truth 31.0 0 0 2568 1 hg19 6 111695485.0 12 111828011.0 0 1 UNEVALUABLE UNEVALUABLE
659_drc intergenic(NPTX2,TMEM130) CAPNS1 chr7 98754991 chr19 36141097 TRANSLOCATION TRUTH_659_drc_198 TRUTH truth 131.0 4 4 99 2584 hg19 7 98384324.0 19 36631999.0 8 99 EVALUABLE BAM_CONFIRMED
659_drc LETM2 ANK1 chr8 38407423 chr8 41686353 DELETION TRUTH_659_drc_199 TRUTH truth 176.0 0 0 642 975 hg19 8 38264941.0 8 41543871.0 0 642 EVALUABLE BAM_REFUTED
659_drc RDH12 intergenic(EXD2,GALNT16) chr14 67727098 chr14 69252451 DUPLICATION TRUTH_659_drc_200 TRUTH truth 40.0 0 0 738 1 hg19 14 68193815.0 14 69719168.0 0 1 UNEVALUABLE UNEVALUABLE
659_drc ENSG00000288645 SYNM chr15 50650792 chr15 99132342 INVERSION TRUTH_659_drc_201 TRUTH truth 297.0 0 0 8 5400 hg19 15 50942989.0 15 99672547.0 0 8 UNEVALUABLE UNEVALUABLE
659_drc SH2D7 AR chr15 78101132 chrX 67695698 TRANSLOCATION TRUTH_659_drc_202 TRUTH truth 37.0 0 0 3102 9644 hg19 15 78393474.0 X 66915540.0 0 3102 EVALUABLE BAM_REFUTED
659_drc FBXO47 intergenic(CDK12,NEUROD2) chr17 38962982 chr17 39579493 DELETION TRUTH_659_drc_203 TRUTH truth 61.0 0 0 445 0 hg19 17 37119235.0 17 37735746.0 0 0 UNEVALUABLE UNEVALUABLE
659_drc SBNO2 C19orf25 chr19 1113046 chr19 1465396 DUPLICATION TRUTH_659_drc_204 TRUTH truth 30.0 0 0 1760 3917 hg19 19 1113045.0 19 1465395.0 0 1760 EVALUABLE BAM_REFUTED
659_drc GCNT7 FAM209B chr20 56524983 chr20 56533464 DELETION TRUTH_659_drc_205 TRUTH truth 610.0 5 0 2218 1950 hg19 20 55100039.0 20 55108520.0 5 1950 EVALUABLE BAM_CONFIRMED
659_e5 DYSF HLA-DRB1 chr2 71603528 chr6 32579025 BND CALL_659_e5_0 FP call 0.0001 0 0 21 3037 hg19 2 71830658.0 6.0 32546802.0 0 21 EVALUABLE BAM_REFUTED
659_e5 MTSS1 MX1 chr8 124572256 chr21 41465858 BND CALL_659_e5_1 FP call 0.0213 0 0 6 859 hg19 8 125584497.0 21.0 42837785.0 0 6 UNEVALUABLE UNEVALUABLE
659_e5 TGFB3 MX1 chr14 75959814 chr21 41465819 BND CALL_659_e5_2 FP call 0.0413 0 0 426 856 hg19 14 76426157.0 21.0 42837746.0 0 426 EVALUABLE BAM_REFUTED
659_e5 FBN1 intergenic(RAD23B,KLF4) chr15 48411348 chr9 107382081 BND CALL_659_e5_3 FP call 0.0342 0 0 1091 23 hg19 15 48703545.0 9.0 110144362.0 0 23 EVALUABLE BAM_REFUTED
659_e5 TNPO2 SLC45A3 chr19 12700206 chr1 205670317 BND CALL_659_e5_4 FP call 0.0 0 0 0 2 hg19 19 12811020.0 1.0 205639445.0 0 0 UNEVALUABLE UNEVALUABLE
659_e5 intergenic(BCAM,NECTIN2) SLC45A3 chr19 44844425 chr1 205670332 BND CALL_659_e5_5 FP call 0.0553 0 0 19 2 hg19 19 45347682.0 1.0 205639460.0 0 2 UNEVALUABLE UNEVALUABLE
659_e5 ERG TMPRSS2 chr21 38537126 chr21 41505308 DEL CALL_659_e5_6 TP call 0.9914 0 0 1 11700 hg19 21 39909050.0 21.0 42877235.0 0 1 UNEVALUABLE UNEVALUABLE
659_e5 DSCAM TMPRSS2 chr21 40818251 chr21 41496394 DUP CALL_659_e5_7 FP call 0.954 0 0 20 8162 hg19 21 42190177.0 21.0 42868321.0 0 20 EVALUABLE BAM_REFUTED
659_e5 intergenic(MED14,USP9X) KMT2C chrX 40945485 chr7 152135815 BND CALL_659_e5_8 FP call 0.0 0 0 0 0 hg19 X 40804738.0 7.0 151832900.0 0 0 UNEVALUABLE UNEVALUABLE
659_e5 intergenic(.,.) MUC3A chrUn_JTFH01000054v1_decoy 4044 chr7 100955942 BND CALL_659_e5_9 FP call 0.0001 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_e5 ERG TMPRSS2 chr21 38559453 chr21 41496391 DELETION TRUTH_659_e5_10 TRUTH truth 45.0 0 0 4 8176 hg19 21 39931377.0 21.0 42868318.0 0 4 UNEVALUABLE UNEVALUABLE
659_eAi DAP3 intergenic(TMEM121,.) chr1 155725973 chr14 106694242 BND CALL_659_eAi_0 FP call 0.0005 0 0 796 6 hg19 1 155695764.0 14 107150259.0 0 6 UNEVALUABLE UNEVALUABLE
659_eAi OR2T27 OR2T7 chr1 248651021 chr1 248441218 BND CALL_659_eAi_1 FP call 0.0011 0 0 906 923 hg19 1 248814322.0 1 248604519.0 0 906 EVALUABLE BAM_REFUTED
659_eAi MYO3B GAREM1 chr2 170498980 chr18 32208164 BND CALL_659_eAi_2 FP call 0.0001 0 0 375 748 hg19 2 171355490.0 18 29788127.0 0 375 EVALUABLE BAM_REFUTED
659_eAi KPNA3 ASXL2 chr13 49723045 chr2 25737829 BND CALL_659_eAi_3 FP call 0.0 0 0 242 3 hg19 13 50297181.0 2 25960698.0 0 3 UNEVALUABLE UNEVALUABLE
659_eAi BTBD7 KIF19 chr14 93324523 chr17 74354447 BND CALL_659_eAi_4 FP call 0.0 0 0 0 3170 hg19 14 93790869.0 17 72350586.0 0 0 UNEVALUABLE UNEVALUABLE
659_eAi EWSR1 ERG chr22 29288369 chr21 38393179 BND CALL_659_eAi_5 TP_DUP call 0.9156 0 0 9268 7 hg19 22 29684358.0 21 39765101.0 0 7 UNEVALUABLE UNEVALUABLE
659_eAi intergenic(ARHGAP36,IGSF1) FGFR2 chrX 131218622 chr10 121577342 BND CALL_659_eAi_6 FP call 0.0 0 0 0 0 hg19 X 130352596.0 10 123336856.0 0 0 UNEVALUABLE UNEVALUABLE
659_eAi ERG EWSR1 chr21 38393177 chr22 29288368 TRANSLOCATION TRUTH_659_eAi_7 TRUTH truth 542.0 0 0 8 9265 hg19 21 39765099.0 22 29684357.0 0 8 UNEVALUABLE UNEVALUABLE
659_eGF NSL1 FGFR2 chr1 212783978 chr10 121483530 BND CALL_659_eGF_0 TP_DUP call 0.9717 0 0 299 6316 hg19 1.0 212957320.0 10.0 123243044.0 0 299 EVALUABLE BAM_REFUTED
659_eGF intergenic(STRIT1,PLCH1) PABPC3 chr3 155309470 chr13 25096701 BND CALL_659_eGF_1 FP call 0.0 5 0 584 4247 hg19 3.0 155027259.0 13.0 25670839.0 5 584 EVALUABLE BAM_CONFIRMED
659_eGF intergenic(.,.) MUC3A chrUn_JTFH01000054v1_decoy 3216 chr7 100952820 BND CALL_659_eGF_2 FP call 0.3822 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_eGF NSL1 FGFR2 chr1 212783977 chr10 121483529 TRANSLOCATION TRUTH_659_eGF_3 TRUTH truth 329.0 0 0 299 6316 hg19 1.0 212957319.0 10.0 123243043.0 0 299 EVALUABLE BAM_REFUTED
659_eGK FLI1 EWSR1 chr11 128804497 chr22 29288026 BND CALL_659_eGK_0 TP_DUP call 0.9997 0 0 3 10419 hg19 11 128674392.0 22 29684015.0 0 3 UNEVALUABLE UNEVALUABLE
659_eGK FLI1 EWSR1 chr11 128804496 chr22 29288025 TRANSLOCATION TRUTH_659_eGK_1 TRUTH truth 171.0 0 0 2 10419 hg19 11 128674391.0 22 29684014.0 0 2 UNEVALUABLE UNEVALUABLE
659_eOZ ZMPSTE24 RLF chr1 40258383 chr1 40240141 BND CALL_659_eOZ_0 TP_DUP call 0.9283 0 0 1436 1832 hg19 1 40724055.0 1 40705813.0 0 1436 EVALUABLE BAM_REFUTED
659_eOZ intergenic(IVNS1ABP,HMCN1) APOA1 chr1 185458106 chr11 116836402 BND CALL_659_eOZ_1 FP call 0.0001 0 0 11 2387 hg19 1 185427238.0 11 116707118.0 0 11 UNEVALUABLE UNEVALUABLE
659_eOZ intergenic(CAPN9,C1orf198) ENSG00000282278 chr1 230830619 chr4 54269535 BND CALL_659_eOZ_2 FP call 0.0 0 0 11 8222 hg19 1 230966365.0 4 55135702.0 0 11 UNEVALUABLE UNEVALUABLE
659_eOZ PUM2 NRG1 chr2 20332287 chr8 32640289 BND CALL_659_eOZ_3 FP call 0.0 0 0 9 5 hg19 2 20532048.0 8 32497808.0 0 5 UNEVALUABLE UNEVALUABLE
659_eOZ PPIG TAF4 chr2 169631864 chr20 62044190 BND CALL_659_eOZ_4 FP call 0.0026 0 0 965 0 hg19 2 170488374.0 20 60619246.0 0 0 UNEVALUABLE UNEVALUABLE
659_eOZ NCKAP1 GABRR2 chr2 182957593 chr6 89270451 BND CALL_659_eOZ_5 FP call 0.0008 0 0 575 0 hg19 2 183822321.0 6 89980170.0 0 0 UNEVALUABLE UNEVALUABLE
659_eOZ ADAMTS9 ATXN7 chr3 64539460 chr3 64003325 BND CALL_659_eOZ_6 FP call 0.0001 0 0 514 2 hg19 3 64525136.0 3 63989001.0 0 2 UNEVALUABLE UNEVALUABLE
659_eOZ intergenic(AADACL2,AADAC) ARSL chr3 151790980 chrX 2960415 BND CALL_659_eOZ_7 FP call 0.0 0 0 2 334 hg19 3 151508768.0 X 2878456.0 0 2 UNEVALUABLE UNEVALUABLE
659_eOZ TRAM1 intergenic(SLCO5A1,PRDM14) chr8 70594568 chr8 69936411 BND CALL_659_eOZ_8 FP call 0.0001 0 0 345 8 hg19 8 71506803.0 8 70848646.0 0 8 UNEVALUABLE UNEVALUABLE
659_eOZ intergenic(OR4B1,OR4X2) MGAT4D chr11 48239718 chr4 140461972 BND CALL_659_eOZ_9 FP call 0.0 0 0 9 8 hg19 11 48261270.0 4 141383126.0 0 8 UNEVALUABLE UNEVALUABLE
659_eOZ intergenic(SLC38A2,SLC38A4) BRCA1 chr12 46698403 chr17 43092667 BND CALL_659_eOZ_10 TP call 0.8053 0 0 4 5600 hg19 12 47092186.0 17 41244684.0 0 4 UNEVALUABLE UNEVALUABLE
659_eOZ intergenic(CCP110,VPS35L) VPS35L chr16 19555079 chr16 19555589 DEL CALL_659_eOZ_11 TP call 0.0003 532 0 881 1770 hg19 16 19566401.0 16 19566911.0 532 881 EVALUABLE BAM_CONFIRMED
659_eOZ SGCA NRG1 chr17 50169441 chr8 32640280 BND CALL_659_eOZ_12 FP call 0.0 0 0 610 5 hg19 17 48246802.0 8 32497799.0 0 5 UNEVALUABLE UNEVALUABLE
659_eOZ DCC BRCA1 chr18 52905072 chr17 43092660 BND CALL_659_eOZ_13 TP_DUP call 0.5227 0 0 2 5597 hg19 18 50431442.0 17 41244677.0 0 2 UNEVALUABLE UNEVALUABLE
659_eOZ ASXL1 RLF chr20 32408309 chr1 40240101 BND CALL_659_eOZ_14 FP call 0.0041 0 0 6 1981 hg19 20 30996112.0 1 40705773.0 0 6 UNEVALUABLE UNEVALUABLE
659_eOZ RLF ZMPSTE24 chr1 40240136 chr1 40258386 INVERSION TRUTH_659_eOZ_15 TRUTH truth 55.0 0 0 1854 1436 hg19 1 40705808.0 1 40724058.0 0 1436 EVALUABLE BAM_REFUTED
659_eOZ ZNF503 LRMDA chr10 75398906 chr10 75478759 DELETION TRUTH_659_eOZ_16 TRUTH truth 38.0 0 0 3566 12 hg19 10 77158664.0 10 77238517.0 0 12 UNEVALUABLE UNEVALUABLE
659_eOZ intergenic(SLC38A2,SLC38A4) BRCA1 chr12 46698402 chr17 43092666 TRANSLOCATION TRUTH_659_eOZ_17 TRUTH truth 337.0 0 0 4 5600 hg19 12 47092185.0 17 41244683.0 0 4 UNEVALUABLE UNEVALUABLE
659_eOZ intergenic(CCP110,VPS35L) VPS35L chr16 19555078 chr16 19555588 DELETION TRUTH_659_eOZ_18 TRUTH truth 65.0 531 0 876 1770 hg19 16 19566400.0 16 19566910.0 531 876 EVALUABLE BAM_CONFIRMED
659_eOZ BRCA1 DCC chr17 43092659 chr18 52905071 TRANSLOCATION TRUTH_659_eOZ_19 TRUTH truth 160.0 0 0 5597 2 hg19 17 41244676.0 18 50431441.0 0 2 UNEVALUABLE UNEVALUABLE
659_eOZ TMC2 IDH3B chr20 2603783 chr20 2660499 DUPLICATION TRUTH_659_eOZ_20 TRUTH truth 35.0 0 0 5 2345 hg19 20 2584429.0 20 2641145.0 0 5 UNEVALUABLE UNEVALUABLE
659_eNS GRIK3 TTC9B chr1 36885885 chr19 40218174 BND CALL_659_eNS_0 FP call 0.0023 0 0 0 2004 hg19 1 37351486.0 19 40724081.0 0 0 UNEVALUABLE UNEVALUABLE
659_eNS TNNI3K NLRC5 chr1 74302110 chr16 57081573 BND CALL_659_eNS_1 TP call 0.9453 0 0 1 795 hg19 1 74767794.0 16 57115485.0 0 1 UNEVALUABLE UNEVALUABLE
659_eNS intergenic(ADAM30,NOTCH2) NOTCH2 chr1 119909958 chr1 119913332 DUP CALL_659_eNS_2 FP call 0.0 0 0 0 1 hg19 1 120452581.0 1 120455955.0 0 0 UNEVALUABLE UNEVALUABLE
659_eNS GOLPH3L UCHL5 chr1 150661873 chr1 193029879 DEL CALL_659_eNS_3 FP call 0.0066 0 0 206 1164 hg19 1 150634349.0 1 192999009.0 0 206 EVALUABLE BAM_REFUTED
659_eNS GOLPH3L MYEOV chr1 150684430 chr11 69296039 BND CALL_659_eNS_4 TP call 0.7943 0 0 16 4333 hg19 1 150656906.0 11 69063506.0 0 16 UNEVALUABLE UNEVALUABLE
659_eNS PIP5K1A intergenic(THEM4,S100A10) chr1 151239130 chr1 151971892 DUP CALL_659_eNS_5 FP call 0.9965 0 0 246 5 hg19 1 151211606.0 1 151944368.0 0 5 UNEVALUABLE UNEVALUABLE
659_eNS DCST2 LINGO1 chr1 155031663 chr15 77723742 BND CALL_659_eNS_6 TP call 0.9268 0 0 1432 3 hg19 1 155004139.0 15 78016084.0 0 3 UNEVALUABLE UNEVALUABLE
659_eNS GON4L TEX35 chr1 155750612 chr1 178514571 DUP CALL_659_eNS_7 FP call 0.1311 0 0 501 761 hg19 1 155720403.0 1 178483706.0 0 501 EVALUABLE BAM_REFUTED
659_eNS PEAR1 intergenic(CXXC4,TET2) chr1 156908018 chr4 104675099 BND CALL_659_eNS_8 FP call 0.0003 0 0 2797 0 hg19 1 156877810.0 4 105596256.0 0 0 UNEVALUABLE UNEVALUABLE
659_eNS intergenic(RGS2,UCHL5) LZTR1 chr1 192928860 chr22 20986868 BND CALL_659_eNS_9 FP call 0.2169 0 0 1 43 hg19 1 192897990.0 22 21341157.0 0 1 UNEVALUABLE UNEVALUABLE
659_eNS PROX1 MCL1 chr1 214011054 chr1 150576284 BND CALL_659_eNS_10 FP call 0.0004 0 0 369 1 hg19 1 214184397.0 1 150548760.0 0 1 UNEVALUABLE UNEVALUABLE
659_eNS NEK4 DCP1A chr3 52760853 chr3 53328378 DUP CALL_659_eNS_11 FP call 0.0005 0 0 389 8 hg19 3 52794869.0 3 53362405.0 0 8 UNEVALUABLE UNEVALUABLE
659_eNS intergenic(ZPLD1,ALCAM) UBA6 chr3 104159727 chr4 67641212 BND CALL_659_eNS_12 FP call 0.0133 0 0 0 275 hg19 3 103878571.0 4 68506930.0 0 0 UNEVALUABLE UNEVALUABLE
659_eNS intergenic(EYS,ADGRB3) NPY5R chr6 66338295 chr4 163351198 BND CALL_659_eNS_13 FP call 0.8414 0 0 0 2081 hg19 6 67048188.0 4 164272350.0 0 0 UNEVALUABLE UNEVALUABLE
659_eNS intergenic(EYS,ADGRB3) EPHA5 chr6 67178502 chr4 65324048 BND CALL_659_eNS_14 FP call 0.0006 0 0 5 858 hg19 6 67888395.0 4 66189766.0 0 5 UNEVALUABLE UNEVALUABLE
659_eNS intergenic(MAP3K7,EPHA7) EPHA7 chr6 93239777 chr6 93240121 DUP CALL_659_eNS_15 FP call 0.0005 0 0 1 1 hg19 6 93949495.0 6 93949839.0 0 1 UNEVALUABLE UNEVALUABLE
659_eNS RXYLT1 intergenic(RXYLT1,SRGAP1) chr12 63802260 chr12 63824054 DEL CALL_659_eNS_16 TP call 0.9995 0 0 1323 275 hg19 12 64196040.0 12 64217834.0 0 275 EVALUABLE BAM_REFUTED
659_eNS COL4A2 intergenic(SLITRK5,GPC5) chr13 110512170 chr13 89678890 BND CALL_659_eNS_17 FP call 0.0012 0 0 1989 0 hg19 13 111164517.0 13 90331144.0 0 0 UNEVALUABLE UNEVALUABLE
659_eNS NETO1 intergenic(PRDM9,CDH10) chr18 72858909 chr5 24013966 BND CALL_659_eNS_18 TP_DUP call 0.5942 0 0 878 0 hg19 18 70526144.0 5 24014075.0 0 0 UNEVALUABLE UNEVALUABLE
659_eNS NETO1 CPNE2 chr18 72859073 chr16 57127954 BND CALL_659_eNS_19 TP_DUP call 0.6501 0 0 877 440 hg19 18 70526308.0 16 57161866.0 0 440 EVALUABLE BAM_REFUTED
659_eNS WDR18 PLK5 chr19 987568 chr19 1535128 DUP CALL_659_eNS_20 TP call 0.9606 0 0 4 889 hg19 19 987568.0 19 1535127.0 0 4 UNEVALUABLE UNEVALUABLE
659_eNS intergenic(PCDH11X,NAP1L3) EPHA5 chrX 92981990 chr4 65323922 BND CALL_659_eNS_21 FP call 0.0 0 0 0 857 hg19 X 92236989.0 4 66189640.0 0 0 UNEVALUABLE UNEVALUABLE
659_eNS DCST2 LINGO1 chr1 155031662 chr15 77723738 TRANSLOCATION TRUTH_659_eNS_22 TRUTH truth 102.0 0 0 1435 3 hg19 1 155004138.0 15 78016080.0 0 3 UNEVALUABLE UNEVALUABLE
659_eNS WDR18 PLK5 chr19 987567 chr19 1535127 DUPLICATION TRUTH_659_eNS_23 TRUTH truth 105.0 0 0 4 889 hg19 19 987567.0 19 1535126.0 0 4 UNEVALUABLE UNEVALUABLE
659_eNS FPGT-TNNI3K NLRC5 chr1 74302109 chr16 57081572 TRANSLOCATION TRUTH_659_eNS_24 TRUTH truth 39.0 0 0 1 795 hg19 1 74767793.0 16 57115484.0 0 1 UNEVALUABLE UNEVALUABLE
659_eNS intergenic(PRDM9,CDH10) NETO1 chr5 24013965 chr18 72858908 TRANSLOCATION TRUTH_659_eNS_25 TRUTH truth 87.0 0 0 0 878 hg19 5 24014074.0 18 70526143.0 0 0 UNEVALUABLE UNEVALUABLE
659_eNS RXYLT1 intergenic(RXYLT1,SRGAP1) chr12 63802259 chr12 63824053 DELETION TRUTH_659_eNS_26 TRUTH truth 132.0 0 0 1323 275 hg19 12 64196039.0 12 64217833.0 0 275 EVALUABLE BAM_REFUTED
659_eNS CPNE2 NETO1 chr16 57127953 chr18 72859072 TRANSLOCATION TRUTH_659_eNS_27 TRUTH truth 21.0 0 0 440 877 hg19 16 57161865.0 18 70526307.0 0 440 EVALUABLE BAM_REFUTED
659_eNS DCST1 MELK chr1 155042794 chr9 36614380 TRANSLOCATION TRUTH_659_eNS_28 TRUTH truth 66.0 0 0 1275 3 hg19 1 155015270.0 9 36614377.0 0 3 UNEVALUABLE UNEVALUABLE
659_eNS GOLPH3L MYEOV chr1 150684429 chr11 69296036 TRANSLOCATION TRUTH_659_eNS_29 TRUTH truth 258.0 0 0 16 4361 hg19 1 150656905.0 11 69063503.0 0 16 UNEVALUABLE UNEVALUABLE
659_eZ3 MRPS21 intergenic(TNFSF4,PRDX6) chr1 150294443 chr1 173272864 BND CALL_659_eZ3_0 FP call 0.0545 0 0 483 1 hg19 1 150266863.0 1 173242003.0 0 1 UNEVALUABLE UNEVALUABLE
659_eZ3 LY9 intergenic(RGS2,UCHL5) chr1 160813664 chr1 192953446 DUP CALL_659_eZ3_1 FP call 0.0963 0 0 1106 0 hg19 1 160783454.0 1 192922576.0 0 0 UNEVALUABLE UNEVALUABLE
659_eZ3 intergenic(PGBD2,.) DMXL2 chr1 248944980 chr15 51499731 BND CALL_659_eZ3_2 TP call 0.9984 0 0 0 3456 hg19 1 249239179.0 15 51791928.0 0 0 UNEVALUABLE UNEVALUABLE
659_eZ3 intergenic(KLF7,CREB1) OBSL1 chr2 207344888 chr2 219557899 DEL CALL_659_eZ3_3 FP call 0.0004 0 0 0 4115 hg19 2 208209612.0 2 220422621.0 0 0 UNEVALUABLE UNEVALUABLE
659_eZ3 intergenic(.,CHL1) KDR chr3 11126 chr4 55089435 BND CALL_659_eZ3_4 FP call 0.0003 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_eZ3 CPNE4 BAIAP2L1 chr3 131898464 chr7 98317252 BND CALL_659_eZ3_5 TP call 0.1455 0 0 3 783 hg19 3 131617308.0 7 97946564.0 0 3 UNEVALUABLE UNEVALUABLE
659_eZ3 STIM2 CSNK2A1 chr4 26995122 chr20 486432 BND CALL_659_eZ3_6 FP call 0.0001 0 0 315 969 hg19 4 26996744.0 20 467076.0 0 315 EVALUABLE BAM_REFUTED
659_eZ3 CAGE1 intergenic(SLC35B3,TFAP2A) chr6 7368689 chr6 9303895 DUP CALL_659_eZ3_7 FP call 0.0884 0 0 251 19 hg19 6 7368922.0 6 9304128.0 0 19 UNEVALUABLE UNEVALUABLE
659_eZ3 TTYH3 SDK1 chr7 2647490 chr7 4093426 BND CALL_659_eZ3_8 TP call 0.9975 0 0 2601 0 hg19 7 2687124.0 7 4133058.0 0 0 UNEVALUABLE UNEVALUABLE
659_eZ3 PHF14 VWDE chr7 10990706 chr7 12359400 DUP CALL_659_eZ3_9 FP call 0.9012 0 0 465 290 hg19 7 11030333.0 7 12399026.0 0 290 EVALUABLE BAM_REFUTED
659_eZ3 intergenic(SMIM30,PPP1R3A) GALNT11 chr7 113310811 chr7 152103142 DEL CALL_659_eZ3_10 FP call 0.1429 0 0 1 783 hg19 7 112950866.0 7 151800227.0 0 1 UNEVALUABLE UNEVALUABLE
659_eZ3 DCAF13 RIMS2 chr8 103432662 chr8 103880068 BND CALL_659_eZ3_11 FP call 0.0224 0 0 218 2 hg19 8 104444890.0 8 104892296.0 0 2 UNEVALUABLE UNEVALUABLE
659_eZ3 OR1K1 DENND1A chr9 122800312 chr9 123578998 DUP CALL_659_eZ3_12 FP call 0.0203 0 0 2420 2 hg19 9 125562591.0 9 126341277.0 0 2 UNEVALUABLE UNEVALUABLE
659_eZ3 RABGAP1 MRRF chr9 123015615 chr9 122275441 BND CALL_659_eZ3_13 FP call 0.038 0 0 391 3 hg19 9 125777894.0 9 125037720.0 0 3 UNEVALUABLE UNEVALUABLE
659_eZ3 intergenic(JRKL,CNTN5) ATM chr11 97162514 chr11 108279498 DUP CALL_659_eZ3_14 FP call 0.8929 0 0 1 935 hg19 11 97033514.0 11 108150225.0 0 1 UNEVALUABLE UNEVALUABLE
659_eZ3 intergenic(NOVA1,FOXG1) FAM90A1 chr14 27278386 chr12 8223519 BND CALL_659_eZ3_15 FP call 0.0432 0 0 0 540 hg19 14 27747592.0 12 8376115.0 0 0 UNEVALUABLE UNEVALUABLE
659_eZ3 intergenic(NOVA1,FOXG1) TRPC4AP chr14 28199336 chr20 35078151 BND CALL_659_eZ3_16 FP call 0.9899 0 0 3 817 hg19 14 28668542.0 20 33665954.0 0 3 UNEVALUABLE UNEVALUABLE
659_eZ3 CCDC88C RIN3 chr14 91283423 chr14 92544674 DUP CALL_659_eZ3_17 TP call 0.8983 0 0 964 11 hg19 14 91749767.0 14 93011019.0 0 11 UNEVALUABLE UNEVALUABLE
659_eZ3 DDX24 RPS6KA5 chr14 94051364 chr14 90989470 BND CALL_659_eZ3_18 TP_DUP call 0.0001 0 0 1788 1 hg19 14 94517710.0 14 91455814.0 0 1 UNEVALUABLE UNEVALUABLE
659_eZ3 DDX24 intergenic(GSC,DICER1) chr14 94053006 chr14 94804670 DUP CALL_659_eZ3_19 FP call 0.3709 0 0 968 1 hg19 14 94519352.0 14 95271007.0 0 1 UNEVALUABLE UNEVALUABLE
659_eZ3 MYH13 MYH8 chr17 10345318 chr17 10395201 DUP CALL_659_eZ3_20 FP call 0.0001 0 0 4792 1344 hg19 17 10248635.0 17 10298518.0 0 1344 EVALUABLE BAM_REFUTED
659_eZ3 intergenic(WTIP,SCGB2B2) ZNF836 chr19 34529717 chr19 52154993 DEL CALL_659_eZ3_21 FP call 0.0029 0 0 0 2346 hg19 19 35020622.0 19 52658246.0 0 0 UNEVALUABLE UNEVALUABLE
659_eZ3 NPHS1 XRCC1 chr19 35842243 chr19 43553849 DUP CALL_659_eZ3_22 FP call 0.0037 0 0 2072 1099 hg19 19 36333145.0 19 44058001.0 0 1099 EVALUABLE BAM_REFUTED
659_eZ3 IFNL4 APLP1 chr19 39247214 chr19 35872100 BND CALL_659_eZ3_23 FP call 0.2099 0 0 1163 2966 hg19 19 39737854.0 19 36363002.0 0 1163 EVALUABLE BAM_REFUTED
659_eZ3 FKRP ARHGAP35 chr19 46756807 chr19 46873584 DEL CALL_659_eZ3_24 FP call 0.2202 0 0 3079 1 hg19 19 47260064.0 19 47376841.0 0 1 UNEVALUABLE UNEVALUABLE
659_eZ3 CSNK1E ATP11A chr22 38302041 chr13 112862525 BND CALL_659_eZ3_25 FP call 0.0001 0 0 4 1012 hg19 22 38698046.0 13 113516839.0 0 4 UNEVALUABLE UNEVALUABLE
659_eZ3 SRPX2 MID2 chrX 100647299 chrX 107854635 BND CALL_659_eZ3_26 FP call 0.9986 0 0 0 328 hg19 X 99902296.0 X 107097865.0 0 0 UNEVALUABLE UNEVALUABLE
659_eZ3 SYTL4 MID2 chrX 100693891 chrX 107854644 BND CALL_659_eZ3_27 TP call 0.999 0 0 2 328 hg19 X 99948888.0 X 107097874.0 0 2 UNEVALUABLE UNEVALUABLE
659_eZ3 intergenic(PGBD2,.) DMXL2 chr1 248944979 chr15 51499730 TRANSLOCATION TRUTH_659_eZ3_28 TRUTH truth 63.0 0 0 0 3458 hg19 1 249239178.0 15 51791927.0 0 0 UNEVALUABLE UNEVALUABLE
659_eZ3 CPNE4 BAIAP2L1 chr3 131898463 chr7 98317251 TRANSLOCATION TRUTH_659_eZ3_29 TRUTH truth 27.0 0 0 3 783 hg19 3 131617307.0 7 97946563.0 0 3 UNEVALUABLE UNEVALUABLE
659_eZ3 TTYH3 SDK1 chr7 2647488 chr7 4093426 INVERSION TRUTH_659_eZ3_30 TRUTH truth 44.0 0 0 2595 0 hg19 7 2687122.0 7 4133058.0 0 0 UNEVALUABLE UNEVALUABLE
659_eZ3 intergenic(SLC4A8,SCN8A) NEMP1 chr12 51528262 chr12 57072792 INVERSION TRUTH_659_eZ3_31 TRUTH truth 53.0 0 0 2 646 hg19 12 51922046.0 12 57466575.0 0 2 UNEVALUABLE UNEVALUABLE
659_eZ3 RPS6KA5 DDX24 chr14 90989469 chr14 94051363 INVERSION TRUTH_659_eZ3_32 TRUTH truth 35.0 0 0 1 1788 hg19 14 91455813.0 14 94517709.0 0 1 UNEVALUABLE UNEVALUABLE
659_eZ3 CCDC88C RIN3 chr14 91283422 chr14 92544673 DUPLICATION TRUTH_659_eZ3_33 TRUTH truth 46.0 0 0 964 11 hg19 14 91749766.0 14 93011018.0 0 11 UNEVALUABLE UNEVALUABLE
659_eZ3 SYTL4 MID2 chrX 100693889 chrX 107854642 INVERSION TRUTH_659_eZ3_34 TRUTH truth 185.0 0 0 2 328 hg19 X 99948886.0 X 107097872.0 0 2 UNEVALUABLE UNEVALUABLE
659_ecd SYF2 RSRP1 chr1 25230321 chr1 25246469 DUP CALL_659_ecd_0 TP call 0.9007 0 0 6 2617 hg19 1 25556812.0 1 25572960.0 0 6 UNEVALUABLE UNEVALUABLE
659_ecd ANKRD35 CRNN chr1 145874170 chr1 152410656 BND CALL_659_ecd_1 TP call 0.5126 0 0 2001 3235 hg19 1 145560909.0 1 152383132.0 0 2001 EVALUABLE BAM_REFUTED
659_ecd intergenic(TXNIP,HJV) TCHH chr1 146003144 chr1 152108709 BND CALL_659_ecd_2 FP call 0.8382 0 0 8 6573 hg19 1 145431899.0 1 152081185.0 0 8 UNEVALUABLE UNEVALUABLE
659_ecd NOTCH2NLC FLG chr1 149408660 chr1 152314302 BND CALL_659_ecd_3 FP call 0.2917 0 0 4016 2690 hg19 1 145226880.0 1 152286778.0 0 2690 EVALUABLE BAM_REFUTED
659_ecd intergenic(PPIAL4C,FCGR1A) ZNF148 chr1 149635813 chr3 125313473 BND CALL_659_ecd_4 FP call 0.0001 0 0 0 1176 hg19 1 149604964.0 3 125032317.0 0 0 UNEVALUABLE UNEVALUABLE
659_ecd TARS2 KIF21B chr1 150488003 chr1 201002607 DUP CALL_659_ecd_5 TP call 0.9765 0 0 1719 593 hg19 1 150460479.0 1 200971735.0 0 593 EVALUABLE BAM_REFUTED
659_ecd ANXA9 intergenic(PTPRC,NR5A2) chr1 150988104 chr1 199818725 DEL CALL_659_ecd_6 TP call 0.8049 0 0 1548 0 hg19 1 150960580.0 1 199787853.0 0 0 UNEVALUABLE UNEVALUABLE
659_ecd SLAMF1 intergenic(DPT,ATP1B1) chr1 160623509 chr1 168732952 DUP CALL_659_ecd_7 FP call 0.374 0 0 30 0 hg19 1 160593299.0 1 168702190.0 0 0 UNEVALUABLE UNEVALUABLE
659_ecd USF1 FCRLB chr1 161040525 chr1 161725884 BND CALL_659_ecd_8 FP call 0.9791 0 0 2305 1576 hg19 1 161010315.0 1 161695674.0 0 1576 EVALUABLE BAM_REFUTED
659_ecd intergenic(HDAC11,FBLN2) RAF1 chr3 13538821 chr3 12596748 BND CALL_659_ecd_9 FP call 0.0 0 0 0 9 hg19 3 13580321.0 3 12638247.0 0 0 UNEVALUABLE UNEVALUABLE
659_ecd GNL3 GLT8D1 chr3 52694140 chr3 52694905 DUP CALL_659_ecd_10 FP call 0.0049 14 0 719 672 hg19 3 52728156.0 3 52728921.0 14 672 EVALUABLE BAM_CONFIRMED
659_ecd ZNF148 ANP32E chr3 125279013 chr1 150230611 BND CALL_659_ecd_11 TP_DUP call 0.4702 0 0 639 620 hg19 3 124997857.0 1 150202946.0 0 620 EVALUABLE BAM_REFUTED
659_ecd TACC3 FGFR3 chr4 1739685 chr4 1807234 DUP CALL_659_ecd_12 FP call 0.4578 0 0 790 16414 hg19 4 1741412.0 4 1808961.0 0 790 EVALUABLE BAM_REFUTED
659_ecd HLA-DRB5 intergenic(ZNF608,GRAMD2B) chr6 32517524 chr5 124992875 BND CALL_659_ecd_13 FP call 0.0 0 0 70 2 hg19 6 32485301.0 5 124328568.0 0 2 UNEVALUABLE UNEVALUABLE
659_ecd MLLT3 AR chr9 20414555 chrX 67545283 BND CALL_659_ecd_14 FP call 0.0 0 0 1670 5553 hg19 9 20414553.0 X 66765125.0 0 1670 EVALUABLE BAM_REFUTED
659_ecd TNKS2 APOBEC3B chr10 91855087 chr22 38986501 BND CALL_659_ecd_15 TP call 0.9987 0 0 373 2397 hg19 10 93614844.0 22 39382506.0 0 373 EVALUABLE BAM_REFUTED
659_ecd intergenic(GPR180,SOX21) OXGR1 chr13 94661432 chr13 96987293 BND CALL_659_ecd_16 FP call 0.0092 0 0 2 2615 hg19 13 95313686.0 13 97639547.0 0 2 UNEVALUABLE UNEVALUABLE
659_ecd FOXA1 TTC6 chr14 37589994 chr14 37641782 DEL CALL_659_ecd_17 FP call 0.0 0 0 0 0 hg19 14 38059199.0 14 38110987.0 0 0 UNEVALUABLE UNEVALUABLE
659_ecd intergenic(MDGA2,RPS29) PCNX1 chr14 48260937 chr14 71057651 DUP CALL_659_ecd_18 FP call 0.0355 0 0 0 486 hg19 14 48730140.0 14 71524368.0 0 0 UNEVALUABLE UNEVALUABLE
659_ecd PCNX1 TMEM40 chr14 71049289 chr3 12743974 BND CALL_659_ecd_19 FP call 0.0067 0 0 280 522 hg19 14 71516006.0 3 12785473.0 0 280 EVALUABLE BAM_REFUTED
659_ecd ZWILCH intergenic(OLFM4,PRR20A) chr15 66548555 chr13 55640483 BND CALL_659_ecd_20 FP call 0.0002 0 0 216 10 hg19 15 66840893.0 13 56214618.0 0 10 UNEVALUABLE UNEVALUABLE
659_ecd TCF4 AR chr18 55586414 chrX 67545409 BND CALL_659_ecd_21 FP call 0.0 0 0 1067 6100 hg19 18 53253645.0 X 66765251.0 0 1067 EVALUABLE BAM_REFUTED
659_ecd EWSR1 GAS2L1 chr22 29295082 chr22 29310459 DEL CALL_659_ecd_22 FP call 0.0015 0 0 3884 889 hg19 22 29691071.0 22 29706449.0 0 889 EVALUABLE BAM_REFUTED
659_ecd SYF2 RSRP1 chr1 25230320 chr1 25246468 DUPLICATION TRUTH_659_ecd_23 TRUTH truth 23.0 0 0 6 2617 hg19 1 25556811.0 1 25572959.0 0 6 UNEVALUABLE UNEVALUABLE
659_ecd ANKRD35 CRNN chr1 145874176 chr1 152410651 DUPLICATION TRUTH_659_ecd_24 TRUTH truth 86.0 0 0 1990 3257 hg19 1 145560903.0 1 152383127.0 0 1990 EVALUABLE BAM_REFUTED
659_ecd ANP32E ZNF148 chr1 150230605 chr3 125279012 TRANSLOCATION TRUTH_659_ecd_25 TRUTH truth 54.0 0 0 620 639 hg19 1 150202940.0 3 124997856.0 0 620 EVALUABLE BAM_REFUTED
659_ecd TARS2 KIF21B chr1 150488002 chr1 201002606 DUPLICATION TRUTH_659_ecd_26 TRUTH truth 112.0 0 0 1720 593 hg19 1 150460478.0 1 200971734.0 0 593 EVALUABLE BAM_REFUTED
659_ecd ANXA9 intergenic(PTPRC,NR5A2) chr1 150988103 chr1 199818724 DELETION TRUTH_659_ecd_27 TRUTH truth 50.0 0 0 1548 0 hg19 1 150960579.0 1 199787852.0 0 0 UNEVALUABLE UNEVALUABLE
659_ecd intergenic(RPIA,AQP7B) SLC12A8 chr2 91572484 chr3 125107526 TRANSLOCATION TRUTH_659_ecd_28 TRUTH truth 25.0 0 0 71 2025 hg19 2 91760543.0 3 124826370.0 0 71 EVALUABLE BAM_REFUTED
659_ecd TNKS2 APOBEC3B chr10 91855086 chr22 38986500 TRANSLOCATION TRUTH_659_ecd_29 TRUTH truth 78.0 0 0 370 2404 hg19 10 93614843.0 22 39382505.0 0 370 EVALUABLE BAM_REFUTED
659_ef5 HLA-C HLA-B chr6 31270072 chr6 31355413 DEL CALL_659_ef5_0 FP call 0.0 4 0 4325 5776 hg19 6 31237849.0 6 31323190.0 4 4325 EVALUABLE BAM_CONFIRMED
659_ef5 R3HDM2 AMFR chr12 57313763 chr16 56408024 BND CALL_659_ef5_1 FP call 0.0075 0 0 11 889 hg19 12 57707546.0 16 56441936.0 0 11 UNEVALUABLE UNEVALUABLE
659_ef5 ATP23 TMEM132D chr12 57941786 chr12 129486484 DEL CALL_659_ef5_2 TP call 0.9958 0 0 857 0 hg19 12 58335569.0 12 129971029.0 0 0 UNEVALUABLE UNEVALUABLE
659_ef5 FOXO1 PAX3 chr13 40587456 chr2 222208360 BND CALL_659_ef5_3 TP_DUP call 0.9463 0 0 1 4346 hg19 13 41161593.0 2 223073079.0 0 1 UNEVALUABLE UNEVALUABLE
659_ef5 intergenic(TUBGCP3,ATP11A) GRTP1 chr13 112662251 chr13 113325816 DEL CALL_659_ef5_4 TP call 0.9397 0 0 9 1940 hg19 13 113316565.0 13 113980131.0 0 9 UNEVALUABLE UNEVALUABLE
659_ef5 PAX3 FOXO1 chr2 222208421 chr13 40587438 TRANSLOCATION TRUTH_659_ef5_5 TRUTH truth 360.0 0 0 4490 1 hg19 2 223073140.0 13 41161575.0 0 1 UNEVALUABLE UNEVALUABLE
659_ef5 ATP23 TMEM132D chr12 57941785 chr12 129486483 DELETION TRUTH_659_ef5_6 TRUTH truth 157.0 0 0 857 0 hg19 12 58335568.0 12 129971028.0 0 0 UNEVALUABLE UNEVALUABLE
659_ef5 intergenic(TUBGCP3,ATP11A) GRTP1 chr13 112662250 chr13 113325815 DELETION TRUTH_659_ef5_7 TRUTH truth 45.0 0 0 9 1942 hg19 13 113316564.0 13 113980130.0 0 9 UNEVALUABLE UNEVALUABLE
659_ein DYSF HLA-DRB1 chr2 71603463 chr6 32578976 BND CALL_659_ein_0 FP call 0.0001 0 0 44 4270 hg19 2 71830593.0 6 32546753.0 0 44 EVALUABLE BAM_REFUTED
659_ein LYN MYH15 chr8 55910796 chr3 108510501 BND CALL_659_ein_1 FP call 0.0 0 0 6 713 hg19 8 56823355.0 3 108229348.0 0 6 UNEVALUABLE UNEVALUABLE
659_ein intergenic(CFAP418,GDF6) CSNK1A1 chr8 95590922 chr5 149495892 BND CALL_659_ein_2 FP call 0.0 0 0 0 1 hg19 8 96603150.0 5 148875455.0 0 0 UNEVALUABLE UNEVALUABLE
659_ein TACC2 FGFR2 chr10 122031451 chr10 121482196 BND CALL_659_ein_3 TP_DUP call 0.902 0 0 25 4892 hg19 10 123790966.0 10 123241710.0 0 25 EVALUABLE BAM_REFUTED
659_ein NLRX1 NOL4 chr11 119179886 chr18 34097338 BND CALL_659_ein_4 TP call 0.9982 0 0 1727 0 hg19 11 119050595.0 18 31677302.0 0 0 UNEVALUABLE UNEVALUABLE
659_ein intergenic(GOT2,CDH8) EGFR chr16 60475688 chr7 55202931 BND CALL_659_ein_5 FP call 0.0 0 0 13 13633 hg19 16 60509592.0 7 55270624.0 0 13 UNEVALUABLE UNEVALUABLE
659_ein MLKL TP53 chr16 74686970 chr17 7677953 BND CALL_659_ein_6 FP call 0.0 0 0 18 715 hg19 16 74720868.0 17 7581271.0 0 18 UNEVALUABLE UNEVALUABLE
659_ein ERVV-1 intergenic(ERVV-1,ERVV-2) chr19 53015385 chr19 53017062 DEL CALL_659_ein_7 FP call 0.989 0 0 844 14 hg19 19 53518638.0 19 53520315.0 0 14 UNEVALUABLE UNEVALUABLE
659_ein intergenic(GNAS,NELFCD) NELFCD chr20 58981161 chr20 58981281 DEL CALL_659_ein_8 TP call 0.0121 157 0 320 317 hg19 20 57556216.0 20 57556336.0 157 317 EVALUABLE BAM_CONFIRMED
659_ein intergenic(DUSP4,SARAF) TMEM72 chr8 29726478 chr10 44935054 TRANSLOCATION TRUTH_659_ein_9 TRUTH truth 108.0 0 0 0 2143 hg19 8 29583994.0 10 45430502.0 0 0 UNEVALUABLE UNEVALUABLE
659_ein FGFR2 TACC2 chr10 121482191 chr10 122031452 INVERSION TRUTH_659_ein_10 TRUTH truth 109.0 0 0 4884 25 hg19 10 123241705.0 10 123790967.0 0 25 EVALUABLE BAM_REFUTED
659_ein NLRX1 NOL4 chr11 119179885 chr18 34097337 TRANSLOCATION TRUTH_659_ein_11 TRUTH truth 147.0 0 0 1727 0 hg19 11 119050594.0 18 31677301.0 0 0 UNEVALUABLE UNEVALUABLE
659_ein intergenic(GNAS,NELFCD) NELFCD chr20 58981160 chr20 58981280 DELETION TRUTH_659_ein_12 TRUTH truth 57.0 157 0 320 317 hg19 20 57556215.0 20 57556335.0 157 317 EVALUABLE BAM_CONFIRMED
659_esc PCARE intergenic(PCARE,CLIP4) chr2 29073918 chr2 29075949 DEL CALL_659_esc_0 FP call 0.0006 0 0 3269 1 hg19 2 29296784.0 2 29298815.0 0 1 UNEVALUABLE UNEVALUABLE
659_esc ARPC4-TTLL3 TPRG1 chr3 9818869 chr3 188968699 DUP CALL_659_esc_1 FP call 0.0039 0 0 1266 5 hg19 3 9860553.0 3 188686488.0 0 5 UNEVALUABLE UNEVALUABLE
659_esc intergenic(ZBBX,SERPINI2) MED24 chr3 167431159 chr17 40022025 BND CALL_659_esc_2 FP call 0.0015 0 0 2 988 hg19 3 167148947.0 17 38178278.0 0 2 UNEVALUABLE UNEVALUABLE
659_esc OTUD4 TTC29 chr4 145155638 chr4 146781203 DEL CALL_659_esc_3 FP call 0.6755 0 0 683 0 hg19 4 146076790.0 4 147702355.0 0 0 UNEVALUABLE UNEVALUABLE
659_esc PCDHB5 PCDHB10 chr5 141137427 chr5 141194506 DEL CALL_659_esc_4 TP call 0.0001 0 0 14859 13210 hg19 5 140517009.0 5 140574079.0 0 13210 EVALUABLE BAM_REFUTED
659_esc intergenic(GAPVD1,MAPKAP1) CIZ1 chr9 125389861 chr9 128178464 DUP CALL_659_esc_5 FP call 0.0144 0 0 7 2236 hg19 9 128152140.0 9 130940743.0 0 7 UNEVALUABLE UNEVALUABLE
659_esc SWI5 PIP5KL1 chr9 128283045 chr9 127927663 BND CALL_659_esc_6 TP_DUP call 0.0054 0 0 19 3732 hg19 9 131045324.0 9 130689942.0 0 19 UNEVALUABLE UNEVALUABLE
659_esc intergenic(GPR158,MYO3A) MAP3K8 chr10 25815704 chr10 30450380 DEL CALL_659_esc_7 TP call 0.9938 0 0 0 804 hg19 10 26104633.0 10 30739309.0 0 0 UNEVALUABLE UNEVALUABLE
659_esc intergenic(SESN3,FAM76B) UNC45B chr11 95445565 chr17 35169883 BND CALL_659_esc_8 FP call 0.0033 0 0 0 1528 hg19 11 95178729.0 17 33496902.0 0 0 UNEVALUABLE UNEVALUABLE
659_esc LIG3 intergenic(SLFN14,PEX12) chr17 34983190 chr17 35561821 DUP CALL_659_esc_9 FP call 0.3654 0 0 1953 16 hg19 17 33310209.0 17 33888840.0 0 16 UNEVALUABLE UNEVALUABLE
659_esc FNDC8 intergenic(TBC1D3B,CCL3L3) chr17 35127158 chr17 36189053 DEL CALL_659_esc_10 FP call 0.9979 0 0 1581 3 hg19 17 33454177.0 17 34516442.0 0 3 UNEVALUABLE UNEVALUABLE
659_esc FNDC8 UNC45B chr17 35127343 chr17 35164143 DUP CALL_659_esc_11 TP call 0.4207 0 0 1565 1057 hg19 17 33454362.0 17 33491162.0 0 1057 EVALUABLE BAM_REFUTED
659_esc NLE1 SLFN5 chr17 35133349 chr17 35269088 BND CALL_659_esc_12 TP call 0.9961 0 0 1140 8 hg19 17 33460368.0 17 33596107.0 0 8 UNEVALUABLE UNEVALUABLE
659_esc SLFN5 SLFN11 chr17 35265869 chr17 35366569 DEL CALL_659_esc_13 TP call 0.9957 0 0 1974 0 hg19 17 33592888.0 17 33693588.0 0 0 UNEVALUABLE UNEVALUABLE
659_esc intergenic(TBC1D3B,CCL3L3) UNC45B chr17 36186054 chr17 35148979 BND CALL_659_esc_14 FP call 0.7144 0 0 0 918 hg19 17 34513430.0 17 33475998.0 0 0 UNEVALUABLE UNEVALUABLE
659_esc intergenic(CDK12,NEUROD2) IKZF3 chr17 39583775 chr17 39761320 BND CALL_659_esc_15 FP call 0.0084 0 0 5 13 hg19 17 37740028.0 17 37917573.0 0 5 UNEVALUABLE UNEVALUABLE
659_esc MED24 intergenic(GOLIM4,MECOM) chr17 40033078 chr3 168758087 BND CALL_659_esc_16 FP call 0.0043 0 0 2094 0 hg19 17 38189331.0 3 168475875.0 0 0 UNEVALUABLE UNEVALUABLE
659_esc MED24 ENSG00000267618 chr17 40047653 chr17 35095036 BND CALL_659_esc_17 FP call 0.0002 0 0 19 9 hg19 17 38203906.0 17 33422055.0 0 9 UNEVALUABLE UNEVALUABLE
659_esc SAMD4B ZNF540 chr19 39367846 chr19 37612164 BND CALL_659_esc_18 TP_DUP call 0.2209 0 0 25 2541 hg19 19 39858486.0 19 38103065.0 0 25 EVALUABLE BAM_REFUTED
659_esc intergenic(NRIP1,USP25) ACACA chr21 15311242 chr17 37111586 BND CALL_659_esc_19 FP call 0.0007 0 0 1 380 hg19 21 16683561.0 17 35468521.0 0 1 UNEVALUABLE UNEVALUABLE
659_esc MUC4 intergenic(FBXO45,NRROS) chr3 195764141 chr3 196620310 DUPLICATION TRUTH_659_esc_20 TRUTH truth 174.0 0 0 1521 0 hg19 3 195491012.0 3 196347181.0 0 0 UNEVALUABLE UNEVALUABLE
659_esc PCDHB5 PCDHB10 chr5 141137296 chr5 141194417 DELETION TRUTH_659_esc_21 TRUTH truth 196.0 0 0 17135 14183 hg19 5 140516878.0 5 140573990.0 0 14183 EVALUABLE BAM_REFUTED
659_esc PIP5KL1 SWI5 chr9 127927662 chr9 128283044 INVERSION TRUTH_659_esc_22 TRUTH truth 36.0 0 0 3728 19 hg19 9 130689941.0 9 131045323.0 0 19 UNEVALUABLE UNEVALUABLE
659_esc intergenic(GPR158,MYO3A) MAP3K8 chr10 25815703 chr10 30450379 DELETION TRUTH_659_esc_23 TRUTH truth 102.0 0 0 0 804 hg19 10 26104632.0 10 30739308.0 0 0 UNEVALUABLE UNEVALUABLE
659_esc FNDC8 UNC45B chr17 35127342 chr17 35164142 DUPLICATION TRUTH_659_esc_24 TRUTH truth 1094.0 0 0 1565 1057 hg19 17 33454361.0 17 33491161.0 0 1057 EVALUABLE BAM_REFUTED
659_esc NLE1 SLFN5 chr17 35133347 chr17 35269086 INVERSION TRUTH_659_esc_25 TRUTH truth 423.0 0 0 1140 8 hg19 17 33460366.0 17 33596105.0 0 8 UNEVALUABLE UNEVALUABLE
659_esc SLFN5 SLFN11 chr17 35265868 chr17 35366568 DELETION TRUTH_659_esc_26 TRUTH truth 392.0 0 0 1977 0 hg19 17 33592887.0 17 33693587.0 0 0 UNEVALUABLE UNEVALUABLE
659_esc ZNF540 SAMD4B chr19 37612158 chr19 39367848 INVERSION TRUTH_659_esc_27 TRUTH truth 35.0 0 0 2528 25 hg19 19 38103059.0 19 39858488.0 0 25 EVALUABLE BAM_REFUTED
659_exZ intergenic(PITX2,FAM241A) E2F3 chr4 111442944 chr6 20493513 BND CALL_659_exZ_0 FP call 0.0 0 0 0 10 hg19 4 112364100.0 6 20493744.0 0 0 UNEVALUABLE UNEVALUABLE
659_exZ HLA-C HLA-B chr6 31269884 chr6 31355210 DUP CALL_659_exZ_1 FP call 0.0121 10 0 6579 7401 hg19 6 31237661.0 6 31322987.0 10 6579 EVALUABLE BAM_CONFIRMED
659_exZ HLA-B HLA-A chr6 31356796 chr6 29943021 BND CALL_659_exZ_2 FP call 0.0 3 0 6978 9056 hg19 6 31324573.0 6 29910798.0 3 6978 EVALUABLE BAM_CONFIRMED
659_exZ OR1L4 OR1L6 chr9 122724819 chr9 122750760 DEL CALL_659_exZ_3 FP call 0.0002 6 0 3038 1581 hg19 9 125487098.0 9 125513039.0 6 1581 EVALUABLE BAM_CONFIRMED
659_exZ LRRC4C TENT5C chr11 40828105 chr1 117626805 BND CALL_659_exZ_4 FP call 0.0 0 0 0 0 hg19 11 40849655.0 1 118169427.0 0 0 UNEVALUABLE UNEVALUABLE
659_exZ intergenic(CASP12,CASP4) FOXRED1 chr11 104900342 chr11 126275357 DEL CALL_659_exZ_5 TP call 0.9824 0 0 22 750 hg19 11 104771069.0 11 126145252.0 0 22 EVALUABLE BAM_REFUTED
659_exZ GRIA4 LAYN chr11 105649183 chr11 111555216 DEL CALL_659_exZ_6 TP call 0.9204 0 0 0 314 hg19 11 105519910.0 11 111425941.0 0 0 UNEVALUABLE UNEVALUABLE
659_exZ DDX10 PKNOX2 chr11 108723165 chr11 125372651 DEL CALL_659_exZ_7 TP call 0.7745 0 0 1909 0 hg19 11 108593892.0 11 125242547.0 0 0 UNEVALUABLE UNEVALUABLE
659_exZ FLI1 EWSR1 chr11 128776011 chr22 29290311 BND CALL_659_exZ_8 TP call 0.9999 0 0 3 6858 hg19 11 128645906.0 22 29686300.0 0 3 UNEVALUABLE UNEVALUABLE
659_exZ intergenic(FLI1,KCNJ1) EWSR1 chr11 128827180 chr22 29291588 BND CALL_659_exZ_9 TP call 0.0147 0 0 2 9176 hg19 11 128697075.0 22 29687577.0 0 2 UNEVALUABLE UNEVALUABLE
659_exZ intergenic(CST5,GGTLC1) CDK9 chr20 23925382 chr9 127789909 BND CALL_659_exZ_10 FP call 0.0 0 0 0 787 hg19 20 23906019.0 9 130552188.0 0 0 UNEVALUABLE UNEVALUABLE
659_exZ intergenic(CASP12,CASP4) FOXRED1 chr11 104900341 chr11 126275356 DELETION TRUTH_659_exZ_11 TRUTH truth 40.0 0 0 22 749 hg19 11 104771068.0 11 126145251.0 0 22 EVALUABLE BAM_REFUTED
659_exZ GRIA4 LAYN chr11 105649182 chr11 111555215 DELETION TRUTH_659_exZ_12 TRUTH truth 62.0 0 0 0 314 hg19 11 105519909.0 11 111425940.0 0 0 UNEVALUABLE UNEVALUABLE
659_exZ DDX10 PKNOX2 chr11 108723164 chr11 125372650 DELETION TRUTH_659_exZ_13 TRUTH truth 48.0 0 0 1908 0 hg19 11 108593891.0 11 125242546.0 0 0 UNEVALUABLE UNEVALUABLE
659_exZ FLI1 EWSR1 chr11 128776010 chr22 29290310 TRANSLOCATION TRUTH_659_exZ_14 TRUTH truth 303.0 0 0 3 6860 hg19 11 128645905.0 22 29686299.0 0 3 UNEVALUABLE UNEVALUABLE
659_exZ intergenic(FLI1,KCNJ1) EWSR1 chr11 128827179 chr22 29291587 TRANSLOCATION TRUTH_659_exZ_15 TRUTH truth 193.0 0 0 2 9167 hg19 11 128697074.0 22 29687576.0 0 2 UNEVALUABLE UNEVALUABLE
659_rr ADD1 MFSD10 chr4 2929702 chr4 2932677 DEL CALL_659_rr_0 FP call 0.0142 0 0 0 2808 hg19 4.0 2931429.0 4.0 2934404.0 0 0 UNEVALUABLE UNEVALUABLE
659_rr HLA-C intergenic(HLA-A,POLR1H) chr6 31270433 chr6 29957476 BND CALL_659_rr_1 FP call 0.0 0 0 6164 527 hg19 6.0 31238210.0 6.0 29925253.0 0 527 EVALUABLE BAM_REFUTED
659_rr intergenic(ETV6,BCL2L14) ETV6 chr12 12015616 chr12 11782804 BND CALL_659_rr_2 FP call 0.2722 0 0 0 0 hg19 12.0 12168550.0 12.0 11935738.0 0 0 UNEVALUABLE UNEVALUABLE
659_rr BORCS5 ETV6 chr12 12450420 chr12 11892217 BND CALL_659_rr_3 FP call 0.3873 0 0 0 0 hg19 12.0 12603354.0 12.0 12045151.0 0 0 UNEVALUABLE UNEVALUABLE
659_rr intergenic(MPHOSPH6,CDH13) EDC4 chr16 82589562 chr16 67876101 BND CALL_659_rr_4 FP call 0.8674 0 0 6 1991 hg19 16.0 82623167.0 16.0 67910004.0 0 6 UNEVALUABLE UNEVALUABLE
659_rr ERG TMPRSS2 chr21 38470129 chr21 41500145 DEL CALL_659_rr_5 TP call 0.9996 0 0 0 10519 hg19 21.0 39842052.0 21.0 42872072.0 0 0 UNEVALUABLE UNEVALUABLE
659_rr intergenic(.,.) MUC3A chrUn_JTFH01000054v1_decoy 3133 chr7 100953040 BND CALL_659_rr_6 FP call 0.0025 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_rr ERG TMPRSS2 chr21 38470128 chr21 41500144 DELETION TRUTH_659_rr_7 TRUTH truth 143.0 0 0 0 10510 hg19 21.0 39842051.0 21.0 42872071.0 0 0 UNEVALUABLE UNEVALUABLE
659_uv intergenic(WARS2,HAO2) RAI14 chr1 119264108 chr5 34824348 BND CALL_659_uv_0 TP call 0.9817 0 0 1 1772 hg19 1 119806731.0 5 34824453.0 0 1 UNEVALUABLE UNEVALUABLE
659_uv intergenic(RC3H1,RABGAP1L) KDM5C chr1 174041735 chrX 53192256 BND CALL_659_uv_1 FP call 0.0556 0 0 5 368 hg19 1 174010873.0 X 53221438.0 0 5 UNEVALUABLE UNEVALUABLE
659_uv intergenic(MYCN,CYRIA) MYCN chr2 15953120 chr2 15946783 BND CALL_659_uv_2 FP call 0.0 0 0 2 49 hg19 2 16093242.0 2 16086905.0 0 2 UNEVALUABLE UNEVALUABLE
659_uv intergenic(PROC,IWS1) IWS1 chr2 127435247 chr2 127505627 DEL CALL_659_uv_3 TP call 0.9783 0 0 0 1594 hg19 2 128192823.0 2 128263203.0 0 0 UNEVALUABLE UNEVALUABLE
659_uv intergenic(CDK15,FZD7) EGFR chr2 201917412 chr7 55202955 BND CALL_659_uv_4 FP call 0.0 0 0 17 13700 hg19 2 202782135.0 7 55270648.0 0 17 UNEVALUABLE UNEVALUABLE
659_uv ATP2B2 PAX5 chr3 10512465 chr9 36834419 BND CALL_659_uv_5 FP call 0.0 0 0 10 6 hg19 3 10554149.0 9 36834416.0 0 6 UNEVALUABLE UNEVALUABLE
659_uv RAF1 intergenic(WDR11,FGFR2) chr3 12608071 chr10 121476119 BND CALL_659_uv_6 FP call 0.0 0 0 4022 0 hg19 3 12649570.0 10 123235633.0 0 0 UNEVALUABLE UNEVALUABLE
659_uv STAB1 NT5DC2 chr3 52521258 chr3 52533736 BND CALL_659_uv_7 TP call 0.7571 0 0 2948 782 hg19 3 52555274.0 3 52567752.0 0 782 EVALUABLE BAM_REFUTED
659_uv UQCC5 NT5DC2 chr3 52541675 chr3 52533708 BND CALL_659_uv_8 FP call 0.9672 0 0 1 775 hg19 3 52575691.0 3 52567724.0 0 1 UNEVALUABLE UNEVALUABLE
659_uv ASB14 PIBF1 chr3 57276678 chr13 72910001 BND CALL_659_uv_9 TP call 0.9878 0 0 656 6 hg19 3 57310706.0 13 73484139.0 0 6 UNEVALUABLE UNEVALUABLE
659_uv NFKBIZ intergenic(EPHA7,MANEA) chr3 101860779 chr6 93474170 BND CALL_659_uv_10 FP call 0.0065 0 0 1 4 hg19 3 101579623.0 6 94183888.0 0 1 UNEVALUABLE UNEVALUABLE
659_uv NCK1 RAD51AP1 chr3 136900056 chr12 4538956 BND CALL_659_uv_11 TP call 0.3836 0 0 197 466 hg19 3 136618898.0 12 4648122.0 0 197 EVALUABLE BAM_REFUTED
659_uv intergenic(UGDH,SMIM14) PLPBP chr4 39528521 chr8 37762648 BND CALL_659_uv_12 TP call 0.5425 0 0 14 1317 hg19 4 39530141.0 8 37620166.0 0 14 UNEVALUABLE UNEVALUABLE
659_uv CENPE intergenic(SMIM21,ZNF516) chr4 103109016 chr18 76048602 BND CALL_659_uv_13 FP call 0.0075 0 0 856 4 hg19 4 104030173.0 18 73760557.0 0 4 UNEVALUABLE UNEVALUABLE
659_uv CLPTM1L intergenic(FGFR2,ATE1) chr5 1318424 chr10 121621141 BND CALL_659_uv_14 FP call 0.0012 0 0 476 6 hg19 5 1318539.0 10 123380655.0 0 6 UNEVALUABLE UNEVALUABLE
659_uv intergenic(IRX1,ADAMTS16) UBE2QL1 chr5 3778524 chr5 6448906 DEL CALL_659_uv_15 TP call 0.9997 0 0 0 2055 hg19 5 3778638.0 5 6449019.0 0 0 UNEVALUABLE UNEVALUABLE
659_uv intergenic(CDH10,CDH9) HSP90AA1 chr5 24672382 chr14 102081406 BND CALL_659_uv_16 FP call 0.0 0 0 13 644 hg19 5 24672491.0 14 102547743.0 0 13 UNEVALUABLE UNEVALUABLE
659_uv intergenic(CDH9,CDH6) SFR1 chr5 29268008 chr10 104123928 BND CALL_659_uv_17 TP call 0.1572 0 0 0 803 hg19 5 29268115.0 10 105883686.0 0 0 UNEVALUABLE UNEVALUABLE
659_uv AFF4 AKIP1 chr5 132896904 chr11 8916928 BND CALL_659_uv_18 TP call 0.9997 0 0 3079 321 hg19 5 132232596.0 11 8938475.0 0 321 EVALUABLE BAM_REFUTED
659_uv HLA-C intergenic(PAX8,ZNG1B) chr6 31271757 chr2 113298717 BND CALL_659_uv_19 FP call 0.0004 0 0 7538 2 hg19 6 31239534.0 2 114056294.0 0 2 UNEVALUABLE UNEVALUABLE
659_uv intergenic(DEFB112,TFAP2D) LGALS4 chr6 50634196 chr19 38801888 BND CALL_659_uv_20 FP call 0.508 0 0 2 1731 hg19 6 50601909.0 19 39292528.0 0 2 UNEVALUABLE UNEVALUABLE
659_uv RAB23 TOE1 chr6 57219820 chr1 45340206 BND CALL_659_uv_21 FP call 0.0 0 0 0 6375 hg19 6 57084618.0 1 45805878.0 0 0 UNEVALUABLE UNEVALUABLE
659_uv intergenic(MMS22L,POU3F2) GEMIN5 chr6 97868734 chr5 154898540 BND CALL_659_uv_22 TP_DUP call 0.9897 0 0 2 536 hg19 6 98316610.0 5 154278100.0 0 2 UNEVALUABLE UNEVALUABLE
659_uv AGR2 PPM1F chr7 16795018 chr22 21941708 BND CALL_659_uv_23 FP call 0.3786 0 0 229 0 hg19 7 16834642.0 22 22296080.0 0 0 UNEVALUABLE UNEVALUABLE
659_uv PPP1R9A NOP56 chr7 95004307 chr20 2658100 BND CALL_659_uv_24 FP call 0.0001 0 0 0 1763 hg19 7 94633619.0 20 2638746.0 0 0 UNEVALUABLE UNEVALUABLE
659_uv DOCK4 MYO1D chr7 111868154 chr17 32675147 BND CALL_659_uv_25 TP call 0.0001 0 0 605 0 hg19 7 111508210.0 17 31002165.0 0 0 UNEVALUABLE UNEVALUABLE
659_uv TPK1 NRG1 chr7 144560087 chr8 32640243 BND CALL_659_uv_26 FP call 0.0 0 0 0 10 hg19 7 144257180.0 8 32497762.0 0 0 UNEVALUABLE UNEVALUABLE
659_uv TPK1 AR chr7 144685743 chrX 67544253 BND CALL_659_uv_27 FP call 0.0003 0 0 3 95 hg19 7 144382836.0 X 66764095.0 0 3 UNEVALUABLE UNEVALUABLE
659_uv LRP12 RIMS2 chr8 104497103 chr8 103997385 BND CALL_659_uv_28 TP_DUP call 0.9968 0 0 1613 1 hg19 8 105509331.0 8 105009613.0 0 1 UNEVALUABLE UNEVALUABLE
659_uv LRP12 NLRC5 chr8 104497584 chr16 57012687 BND CALL_659_uv_29 FP call 0.0001 0 0 2416 0 hg19 8 105509812.0 16 57046599.0 0 0 UNEVALUABLE UNEVALUABLE
659_uv DNAJC1 DIS3 chr10 21965893 chr13 72755525 BND CALL_659_uv_30 FP call 0.0 0 0 1 300 hg19 10 22254822.0 13 73329663.0 0 1 UNEVALUABLE UNEVALUABLE
659_uv OPALIN TACC2 chr10 96349787 chr10 122171414 DUP CALL_659_uv_31 TP call 0.7397 0 0 696 0 hg19 10 98109544.0 10 123930929.0 0 0 UNEVALUABLE UNEVALUABLE
659_uv intergenic(SEC23IP,PLPP4) GAPDH chr10 120344226 chr12 6537817 BND CALL_659_uv_32 TP call 0.9957 0 0 1 2014 hg19 10 122103738.0 12 6646983.0 0 1 UNEVALUABLE UNEVALUABLE
659_uv PLPP4 GAPDH chr10 120559053 chr12 6537318 BND CALL_659_uv_33 FP call 0.5143 0 0 2 1909 hg19 10 122318565.0 12 6646484.0 0 2 UNEVALUABLE UNEVALUABLE
659_uv intergenic(WDR11,FGFR2) FGFR2 chr10 121019364 chr10 121586528 BND CALL_659_uv_34 FP call 0.0 0 0 1 0 hg19 10 122778877.0 10 123346042.0 0 0 UNEVALUABLE UNEVALUABLE
659_uv FGFR2 ANXA11 chr10 121566032 chr10 80157764 BND CALL_659_uv_35 TP_DUP call 0.0023 0 0 1825 2140 hg19 10 123325546.0 10 81917520.0 0 1825 EVALUABLE BAM_REFUTED
659_uv FGFR2 intergenic(IL12B,ADRA1B) chr10 121577172 chr5 159535674 BND CALL_659_uv_36 FP call 0.0 0 0 5 12 hg19 10 123336686.0 5 158962682.0 0 5 UNEVALUABLE UNEVALUABLE
659_uv FGFR2 intergenic(PLPP4,WDR11) chr10 121589962 chr10 120785677 BND CALL_659_uv_37 FP call 0.0002 0 0 1 0 hg19 10 123349476.0 10 122545189.0 0 0 UNEVALUABLE UNEVALUABLE
659_uv FGFR2 ATE1 chr10 121591090 chr10 121859015 DEL CALL_659_uv_38 FP call 0.0001 0 0 2 27 hg19 10 123350604.0 10 123618530.0 0 2 UNEVALUABLE UNEVALUABLE
659_uv intergenic(ZNF195,ART5) CTNNB1 chr11 3512057 chr3 41240091 BND CALL_659_uv_39 FP call 0.1115 0 0 0 10 hg19 11 3533287.0 3 41281582.0 0 0 UNEVALUABLE UNEVALUABLE
659_uv C11orf16 AFF4 chr11 8920172 chr5 132896824 BND CALL_659_uv_40 FP call 0.0344 0 0 28 3257 hg19 11 8941719.0 5 132232516.0 0 28 EVALUABLE BAM_REFUTED
659_uv intergenic(GRM5,TYR) PDIA3 chr11 89139965 chr15 43771105 BND CALL_659_uv_41 FP call 0.9687 0 0 4 429 hg19 11 88873133.0 15 44063303.0 0 4 UNEVALUABLE UNEVALUABLE
659_uv intergenic(JRKL,CNTN5) SLC1A5 chr11 98457899 chr19 46787669 BND CALL_659_uv_42 TP call 0.265 0 0 0 2147 hg19 11 98328628.0 19 47290926.0 0 0 UNEVALUABLE UNEVALUABLE
659_uv ATM intergenic(KLHL4,CPXCR1) chr11 108229277 chrX 88642971 BND CALL_659_uv_43 FP call 0.0 0 0 1093 1 hg19 11 108100004.0 X 87897972.0 0 1 UNEVALUABLE UNEVALUABLE
659_uv intergenic(MDGA2,RPS29) NIN chr14 49196485 chr14 50723524 DEL CALL_659_uv_44 FP call 0.0373 0 0 0 733 hg19 14 49663203.0 14 51190242.0 0 0 UNEVALUABLE UNEVALUABLE
659_uv SOS2 NIN chr14 50155305 chr14 50723629 DUP CALL_659_uv_45 TP call 0.0596 0 0 0 734 hg19 14 50622023.0 14 51190347.0 0 0 UNEVALUABLE UNEVALUABLE
659_uv intergenic(VRK1,BCL11B) RPL3 chr14 98973043 chr22 39313634 BND CALL_659_uv_46 FP call 0.0274 0 0 2227 1493 hg19 14 99439380.0 22 39709639.0 0 1493 EVALUABLE BAM_REFUTED
659_uv B2M intergenic(SEC23IP,PLPP4) chr15 44715540 chr10 120380689 BND CALL_659_uv_47 FP call 0.0 0 0 1703 0 hg19 15 45007738.0 10 122140201.0 0 0 UNEVALUABLE UNEVALUABLE
659_uv intergenic(MCTP2,NR2F2) NOP53 chr15 94856669 chr19 47756723 BND CALL_659_uv_48 FP call 0.0001 0 0 1281 746 hg19 15 95399898.0 19 48259980.0 0 746 EVALUABLE BAM_REFUTED
659_uv C17orf97 intergenic(SATB1,KCNH8) chr17 413993 chr3 18832950 BND CALL_659_uv_49 FP call 0.0001 0 0 6585 0 hg19 17 263784.0 3 18874442.0 0 0 UNEVALUABLE UNEVALUABLE
659_uv intergenic(SKOR2,SMAD2) SMAD2 chr18 47762713 chr18 47825872 DEL CALL_659_uv_50 FP call 0.2924 0 0 1 3 hg19 18 45289084.0 18 45352243.0 0 1 UNEVALUABLE UNEVALUABLE
659_uv SMAD2 ZBTB7C chr18 47823468 chr18 48395853 DUP CALL_659_uv_51 FP call 0.9843 0 0 2 17 hg19 18 45349839.0 18 45922224.0 0 2 UNEVALUABLE UNEVALUABLE
659_uv NLRP11 FGF20 chr19 55785773 chr8 16995661 BND CALL_659_uv_52 FP call 0.92 0 0 597 214 hg19 19 56297139.0 8 16853170.0 0 214 EVALUABLE BAM_REFUTED
659_uv intergenic(DIAPH2,PCDH19) MKI67 chrX 99478430 chr10 128099234 BND CALL_659_uv_53 FP call 0.0043 0 0 0 240 hg19 X 98733428.0 10 129897498.0 0 0 UNEVALUABLE UNEVALUABLE
659_uv intergenic(WARS2,HAO2) RAI14 chr1 119264107 chr5 34824347 TRANSLOCATION TRUTH_659_uv_54 TRUTH truth 22.0 0 0 1 1776 hg19 1 119806730.0 5 34824452.0 0 1 UNEVALUABLE UNEVALUABLE
659_uv S100A10 TPP2 chr1 151983201 chr13 102600206 TRANSLOCATION TRUTH_659_uv_55 TRUTH truth 41.0 0 0 462 0 hg19 1 151955677.0 13 103252556.0 0 0 UNEVALUABLE UNEVALUABLE
659_uv intergenic(PROC,IWS1) IWS1 chr2 127435246 chr2 127505626 DELETION TRUTH_659_uv_56 TRUTH truth 33.0 0 0 0 1600 hg19 2 128192822.0 2 128263202.0 0 0 UNEVALUABLE UNEVALUABLE
659_uv STAB1 NT5DC2 chr3 52521256 chr3 52533734 INVERSION TRUTH_659_uv_57 TRUTH truth 130.0 0 0 2954 781 hg19 3 52555272.0 3 52567750.0 0 781 EVALUABLE BAM_REFUTED
659_uv ASB14 PIBF1 chr3 57276677 chr13 72910000 TRANSLOCATION TRUTH_659_uv_58 TRUTH truth 93.0 0 0 656 6 hg19 3 57310705.0 13 73484138.0 0 6 UNEVALUABLE UNEVALUABLE
659_uv NCK1 RAD51AP1 chr3 136900055 chr12 4538955 TRANSLOCATION TRUTH_659_uv_59 TRUTH truth 33.0 0 0 197 466 hg19 3 136618897.0 12 4648121.0 0 197 EVALUABLE BAM_REFUTED
659_uv TM4SF1 DNM2 chr3 149371724 chr19 10765240 TRANSLOCATION TRUTH_659_uv_60 TRUTH truth 25.0 0 0 668 15 hg19 3 149089511.0 19 10875916.0 0 15 UNEVALUABLE UNEVALUABLE
659_uv intergenic(UGDH,SMIM14) PLPBP chr4 39528520 chr8 37762647 TRANSLOCATION TRUTH_659_uv_61 TRUTH truth 44.0 0 0 14 1317 hg19 4 39530140.0 8 37620165.0 0 14 UNEVALUABLE UNEVALUABLE
659_uv intergenic(IRX1,ADAMTS16) UBE2QL1 chr5 3778523 chr5 6448905 DELETION TRUTH_659_uv_62 TRUTH truth 118.0 0 0 0 2055 hg19 5 3778637.0 5 6449018.0 0 0 UNEVALUABLE UNEVALUABLE
659_uv intergenic(CDH9,CDH6) SFR1 chr5 29268007 chr10 104123927 TRANSLOCATION TRUTH_659_uv_63 TRUTH truth 22.0 0 0 0 803 hg19 5 29268114.0 10 105883685.0 0 0 UNEVALUABLE UNEVALUABLE
659_uv AFF4 AKIP1 chr5 132896903 chr11 8916925 TRANSLOCATION TRUTH_659_uv_64 TRUTH truth 189.0 0 0 3082 321 hg19 5 132232595.0 11 8938472.0 0 321 EVALUABLE BAM_REFUTED
659_uv GEMIN5 intergenic(MMS22L,POU3F2) chr5 154898539 chr6 97868733 TRANSLOCATION TRUTH_659_uv_65 TRUTH truth 114.0 0 0 535 2 hg19 5 154278099.0 6 98316609.0 0 2 UNEVALUABLE UNEVALUABLE
659_uv DOCK4 MYO1D chr7 111868151 chr17 32674968 TRANSLOCATION TRUTH_659_uv_66 TRUTH truth 56.0 0 0 605 0 hg19 7 111508207.0 17 31001986.0 0 0 UNEVALUABLE UNEVALUABLE
659_uv ASPH KRT8 chr8 61579476 chr12 52897567 TRANSLOCATION TRUTH_659_uv_67 TRUTH truth 31.0 0 0 1734 764 hg19 8 62492035.0 12 53291351.0 0 764 EVALUABLE BAM_REFUTED
659_uv RIMS2 LRP12 chr8 103997382 chr8 104497102 INVERSION TRUTH_659_uv_68 TRUTH truth 52.0 0 0 1 1612 hg19 8 105009610.0 8 105509330.0 0 1 UNEVALUABLE UNEVALUABLE
659_uv ANXA11 FGFR2 chr10 80157763 chr10 121566031 INVERSION TRUTH_659_uv_69 TRUTH truth 69.0 0 0 2141 1826 hg19 10 81917519.0 10 123325545.0 0 1826 EVALUABLE BAM_REFUTED
659_uv OPALIN TACC2 chr10 96349821 chr10 122171381 DUPLICATION TRUTH_659_uv_70 TRUTH truth 463.0 0 0 696 0 hg19 10 98109578.0 10 123930896.0 0 0 UNEVALUABLE UNEVALUABLE
659_uv intergenic(SEC23IP,PLPP4) GAPDH chr10 120344224 chr12 6537816 TRANSLOCATION TRUTH_659_uv_71 TRUTH truth 105.0 0 0 1 2014 hg19 10 122103736.0 12 6646982.0 0 1 UNEVALUABLE UNEVALUABLE
659_uv intergenic(JRKL,CNTN5) SLC1A5 chr11 98457898 chr19 46787668 TRANSLOCATION TRUTH_659_uv_72 TRUTH truth 72.0 0 0 0 2147 hg19 11 98328627.0 19 47290925.0 0 0 UNEVALUABLE UNEVALUABLE
659_uv SOS2 NIN chr14 50155732 chr14 50723533 DUPLICATION TRUTH_659_uv_73 TRUTH truth 36.0 0 0 0 733 hg19 14 50622450.0 14 51190251.0 0 0 UNEVALUABLE UNEVALUABLE
1173_SK8 SNX2 intergenic(POU5F1B,MYC) chr5 122810265 chr8 127734809 BND CALL_1173_SK8_0 FP call 0.0 0 0 21 37 hg19 5 122145960.0 8.0 128747055.0 0 21 EVALUABLE BAM_REFUTED
1173_SK8 intergenic(SPRY4,FGF1) FGF1 chr5 142563847 chr5 142594028 BND CALL_1173_SK8_1 FP call 0.0 0 0 50 46 hg19 5 141943412.0 5.0 141973593.0 0 46 EVALUABLE BAM_REFUTED
1173_SK8 intergenic(QRSL1,CD24) BEND3 chr6 106695906 chr6 107069981 DUP CALL_1173_SK8_2 FP call 0.0016 0 0 31 3515 hg19 6 107143781.0 6.0 107391185.0 0 31 EVALUABLE BAM_REFUTED
1173_SK8 intergenic(CD24,MTRES1) BEND3 chr6 106993757 chr6 107070422 DEL CALL_1173_SK8_3 FP call 0.7761 0 0 31 3705 hg19 6 107314961.0 6.0 107391626.0 0 31 EVALUABLE BAM_REFUTED
1173_SK8 intergenic(MTRES1,BEND3) BEND3 chr6 107057644 chr6 107070680 BND CALL_1173_SK8_4 FP call 0.0008 0 0 43 2922 hg19 6 107378848.0 6.0 107391884.0 0 43 EVALUABLE BAM_REFUTED
1173_SK8 MUC3A intergenic(.,.) chr7 100958922 chrUn_JTFH01000013v1_decoy 387 BND CALL_1173_SK8_5 FP call 0.0016 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
1173_SK8 intergenic(LRATD2,POU5F1B) SYNM chr8 126903397 chr15 99105560 BND CALL_1173_SK8_6 FP call 0.5014 0 0 28 1596 hg19 8 127915642.0 15.0 99645766.0 0 28 EVALUABLE BAM_REFUTED
1173_SK8 intergenic(POU5F1B,MYC) FES chr8 127696087 chr15 90893958 BND CALL_1173_SK8_7 FP call 0.0009 0 0 22 1721 hg19 8 128708332.0 15.0 91437188.0 0 22 EVALUABLE BAM_REFUTED
1173_SK8 intergenic(POU5F1B,MYC) POU5F1B chr8 127725267 chr8 127416362 BND CALL_1173_SK8_8 FP call 0.9082 0 0 30 4686 hg19 8 128737513.0 8.0 128428607.0 0 30 EVALUABLE BAM_REFUTED
1173_SK8 intergenic(SIK3,PAFAH1B2) PCSK7 chr11 117138542 chr11 117206079 BND CALL_1173_SK8_9 FP call 0.0 1 0 285 1346 hg19 11 117009258.0 11.0 117076795.0 1 285 EVALUABLE BAM_AMBIGUOUS
1173_SK8 OR10G6 intergenic(OR10G6,OR10G4) chr11 123995161 chr11 123996992 DEL CALL_1173_SK8_10 FP call 0.0326 0 0 38 29 hg19 11 123865868.0 11.0 123867699.0 0 29 EVALUABLE BAM_REFUTED
1173_SK8 MIPOL1 intergenic(POU5F1B,MYC) chr14 37491398 chr8 127735060 BND CALL_1173_SK8_11 FP call 0.0 0 0 31 44 hg19 14 37960603.0 8.0 128747306.0 0 31 EVALUABLE BAM_REFUTED
1173_SK8 intergenic(.,GOLGA6L6) NTRK3 chr15 20120386 chr15 88050111 BND CALL_1173_SK8_12 FP call 0.0513 0 0 18 39 hg19 15 20325639.0 15.0 88593342.0 0 18 UNEVALUABLE UNEVALUABLE
1173_SK8 NTRK3 MAN2A2 chr15 88109298 chr15 90913443 DUP CALL_1173_SK8_13 FP call 0.0001 0 0 32 1993 hg19 15 88652529.0 15.0 91456673.0 0 32 EVALUABLE BAM_REFUTED
1173_SK8 NTRK3 SEMA4B chr15 88140415 chr15 90164776 DEL CALL_1173_SK8_14 FP call 0.0001 0 0 47 28 hg19 15 88683646.0 15.0 90708008.0 0 28 EVALUABLE BAM_REFUTED
1173_SK8 NTRK3 intergenic(IDH2,SEMA4B) chr15 88140508 chr15 90135825 DUP CALL_1173_SK8_15 FP call 0.9848 0 0 46 47 hg19 15 88683739.0 15.0 90679057.0 0 46 EVALUABLE BAM_REFUTED
1173_SK8 WDR93 intergenic(ARRDC4,IGF1R) chr15 89715051 chr15 98304177 BND CALL_1173_SK8_16 FP call 0.0022 0 0 395 18 hg19 15 90258282.0 15.0 98847406.0 0 18 UNEVALUABLE UNEVALUABLE
1173_SK8 MESP1 intergenic(LYSMD4,ADAMTS17) chr15 89751004 chr15 99849471 DEL CALL_1173_SK8_17 FP call 0.358 0 0 2257 33 hg19 15 90294235.0 15.0 100389676.0 0 33 EVALUABLE BAM_REFUTED
1173_SK8 IDH2 SEMA4B chr15 90096195 chr15 90228498 BND CALL_1173_SK8_18 FP call 0.0117 0 0 45 2334 hg19 15 90639427.0 15.0 90771730.0 0 45 EVALUABLE BAM_REFUTED
1173_SK8 ZNF774 NTRK3 chr15 90358249 chr15 88141520 BND CALL_1173_SK8_19 FP call 0.0 0 0 54 27 hg19 15 90901481.0 15.0 88684751.0 0 27 EVALUABLE BAM_REFUTED
1173_SK8 intergenic(IQGAP1,CRTC3) IDH2 chr15 90508623 chr15 90090511 BND CALL_1173_SK8_20 FP call 0.0117 0 0 23 1875 hg19 15 91051855.0 15.0 90633743.0 0 23 EVALUABLE BAM_REFUTED
1173_SK8 intergenic(IQGAP1,CRTC3) MYO18B chr15 90515001 chr22 26026754 BND CALL_1173_SK8_21 FP call 0.9545 0 0 24 2345 hg19 15 91058233.0 22.0 26422720.0 0 24 EVALUABLE BAM_REFUTED
1173_SK8 intergenic(IQGAP1,CRTC3) CIB1 chr15 90529010 chr15 90231108 BND CALL_1173_SK8_22 FP call 0.0007 0 0 19 1162 hg19 15 91072242.0 15.0 90774340.0 0 19 UNEVALUABLE UNEVALUABLE
1173_SK8 CRTC3 NTRK3 chr15 90591160 chr15 88057955 BND CALL_1173_SK8_23 FP call 0.0 0 0 37 36 hg19 15 91134392.0 15.0 88601186.0 0 36 EVALUABLE BAM_REFUTED
1173_SK8 CRTC3 SYNM chr15 90625095 chr15 99131012 DUP CALL_1173_SK8_24 FP call 0.0023 0 0 46 3470 hg19 15 91168327.0 15.0 99671217.0 0 46 EVALUABLE BAM_REFUTED
1173_SK8 FURIN IQGAP1 chr15 90879938 chr15 90438872 BND CALL_1173_SK8_25 TP_DUP call 0.9942 0 0 2372 256 hg19 15 91423168.0 15.0 90982104.0 0 256 EVALUABLE BAM_REFUTED
1173_SK8 intergenic(NR2F2,ARRDC4) IGF1R chr15 97867352 chr15 98913251 BND CALL_1173_SK8_26 FP call 0.0 0 0 32 2135 hg19 15 98410582.0 15.0 99456480.0 0 32 EVALUABLE BAM_REFUTED
1173_SK8 IGF1R NTRK3 chr15 98853841 chr15 88140597 BND CALL_1173_SK8_27 FP call 0.0001 0 0 31 49 hg19 15 99397070.0 15.0 88683828.0 0 31 EVALUABLE BAM_REFUTED
1173_SK8 intergenic(PGPEP1L,SYNM) NTRK3 chr15 99091617 chr15 88080124 BND CALL_1173_SK8_28 FP call 0.0 0 0 34 33 hg19 15 99631818.0 15.0 88623355.0 0 33 EVALUABLE BAM_REFUTED
1173_SK8 TTC23 NTRK3 chr15 99191766 chr15 88146213 BND CALL_1173_SK8_29 FP call 0.0059 0 0 42 30 hg19 15 99731971.0 15.0 88689444.0 0 30 EVALUABLE BAM_REFUTED
1173_SK8 LRRK1 NTRK3 chr15 100960430 chr15 88072734 BND CALL_1173_SK8_30 FP call 0.0 0 0 32 39 hg19 15 101500635.0 15.0 88615965.0 0 32 EVALUABLE BAM_REFUTED
1173_SK8 LRRK1 FES chr15 100967171 chr15 90889596 BND CALL_1173_SK8_31 FP call 0.796 0 0 20 2282 hg19 15 101507376.0 15.0 91432826.0 0 20 EVALUABLE BAM_REFUTED
1173_SK8 BAHCC1 FASN chr17 81424416 chr17 82082656 DUP CALL_1173_SK8_32 FP call 0.0312 0 0 25 2266 hg19 17 79398216.0 17.0 80040532.0 0 25 EVALUABLE BAM_REFUTED
1173_SK8 FBXO46 RSPH6A chr19 45717113 chr19 45810840 DUP CALL_1173_SK8_33 FP call 0.0085 0 0 44 677 hg19 19 46220371.0 19.0 46314098.0 0 44 EVALUABLE BAM_REFUTED
1173_SK8 SFI1 ENSG00000285404 chr22 31615271 chr22 31877321 DUP CALL_1173_SK8_34 FP call 0.0033 0 0 1413 47 hg19 22 32011257.0 22.0 32273307.0 0 47 EVALUABLE BAM_REFUTED
1173_SK8 ENSG00000285404 NTRK3 chr22 31789373 chr15 88124382 BND CALL_1173_SK8_35 FP call 0.0 0 0 35 46 hg19 22 32185359.0 15.0 88667613.0 0 35 EVALUABLE BAM_REFUTED
1173_SK8 ENSG00000285404 intergenic(PISD,PRR14L) chr22 31802714 chr22 31666735 BND CALL_1173_SK8_36 FP call 0.2866 0 0 670 42 hg19 22 32198700.0 22.0 32062721.0 0 42 EVALUABLE BAM_REFUTED
1173_SK8 TMSB4X SETBP1 chrX 12977021 chr18 45065866 BND CALL_1173_SK8_37 FP call 0.0 0 0 232 39 hg19 X 12995140.0 18.0 42645831.0 0 39 EVALUABLE BAM_REFUTED
1173_SK8 IQGAP1 FURIN chr15 90438867 chr15 90879939 INVERSION TRUTH_1173_SK8_38 TRUTH truth 79.0 0 0 251 2372 hg19 15 90982099.0 15.0 91423169.0 0 251 EVALUABLE BAM_REFUTED
659_bD1 intergenic(HS3ST1,RAB28) ZNF518B chr4 11469651 chr4 10445478 BND CALL_659_bD1_0 TP_DUP call 0.047 0 0 1 3860 hg19 4 11471275.0 4 10447102.0 0 1 UNEVALUABLE UNEVALUABLE
659_bD1 AHR CNOT2 chr7 16961259 chr12 70310980 BND CALL_659_bD1_1 FP call 0.0025 0 0 0 394 hg19 7 17000883.0 12 70704760.0 0 0 UNEVALUABLE UNEVALUABLE
659_bD1 ARHGAP42 CBLN1 chr11 100831095 chr16 49281258 BND CALL_659_bD1_2 TP call 0.9906 0 0 0 2070 hg19 11 100701826.0 16 49315169.0 0 0 UNEVALUABLE UNEVALUABLE
659_bD1 ERC1 ETV6 chr12 1169818 chr12 11878031 DUP CALL_659_bD1_3 TP call 0.9674 0 0 2 11002 hg19 12 1278984.0 12 12030965.0 0 2 UNEVALUABLE UNEVALUABLE
659_bD1 intergenic(PARP11,CCND2) PLAA chr12 4118736 chr9 26935170 BND CALL_659_bD1_4 TP_DUP call 0.9974 0 0 0 578 hg19 12 4227902.0 9 26935168.0 0 0 UNEVALUABLE UNEVALUABLE
659_bD1 ATN1 intergenic(ATN1,C12orf57) chr12 6941552 chr12 6942587 BND CALL_659_bD1_5 TP call 0.991 12 0 1895 14 hg19 12 7050715.0 12 7051750.0 12 14 UNEVALUABLE UNEVALUABLE
659_bD1 ETV6 LRP6 chr12 11885545 chr12 12156105 DUP CALL_659_bD1_6 TP call 0.9822 0 0 12565 371 hg19 12 12038479.0 12 12309039.0 0 371 EVALUABLE BAM_REFUTED
659_bD1 LRP1 MGAT4C chr12 57177461 chr12 86013459 DUP CALL_659_bD1_7 TP call 0.9982 0 0 1894 385 hg19 12 57571244.0 12 86407237.0 0 385 EVALUABLE BAM_REFUTED
659_bD1 MBD6 intergenic(KITLG,DUSP6) chr12 57528386 chr12 89000780 BND CALL_659_bD1_8 TP call 0.7774 0 0 4359 2 hg19 12 57922169.0 12 89394557.0 0 2 UNEVALUABLE UNEVALUABLE
659_bD1 PPM1H FRS2 chr12 62779084 chr12 69579066 BND CALL_659_bD1_9 FP call 0.0004 0 0 10 1 hg19 12 63172864.0 12 69972846.0 0 1 UNEVALUABLE UNEVALUABLE
659_bD1 AVPR1A PPFIA2 chr12 63150651 chr12 81431429 BND CALL_659_bD1_10 FP call 0.0 0 0 4199 0 hg19 12 63544431.0 12 81825208.0 0 0 UNEVALUABLE UNEVALUABLE
659_bD1 DPY19L2 intergenic(TRHDE,ATXN7L3B) chr12 63668266 chr12 73863519 DEL CALL_659_bD1_11 FP call 0.0009 0 0 2340 0 hg19 12 64062046.0 12 74257299.0 0 0 UNEVALUABLE UNEVALUABLE
659_bD1 intergenic(DPY19L2,RXYLT1) AVPR1A chr12 63768773 chr12 63150346 BND CALL_659_bD1_12 FP call 0.0 0 0 0 5572 hg19 12 64162553.0 12 63544126.0 0 0 UNEVALUABLE UNEVALUABLE
659_bD1 intergenic(MSRB3,HMGA2) MYRFL chr12 65746949 chr12 69879094 DEL CALL_659_bD1_13 TP_DUP call 0.981 0 0 0 0 hg19 12 66140729.0 12 70272874.0 0 0 UNEVALUABLE UNEVALUABLE
659_bD1 CPM ANKS1B chr12 68893771 chr12 99806649 DEL CALL_659_bD1_14 TP call 0.0028 0 0 4 1470 hg19 12 69287551.0 12 100200427.0 0 4 UNEVALUABLE UNEVALUABLE
659_bD1 LYZ intergenic(DCN,BTG1) chr12 69352250 chr12 91825030 DUP CALL_659_bD1_15 TP call 0.7268 0 0 361 2 hg19 12 69746030.0 12 92218806.0 0 2 UNEVALUABLE UNEVALUABLE
659_bD1 FRS2 intergenic(KITLG,DUSP6) chr12 69574028 chr12 89232046 BND CALL_659_bD1_16 FP call 0.0 0 0 4570 0 hg19 12 69967808.0 12 89625823.0 0 0 UNEVALUABLE UNEVALUABLE
659_bD1 PPFIA2 AKT1 chr12 81605657 chr14 104793337 BND CALL_659_bD1_17 FP call 0.0086 0 0 0 60 hg19 12 81999436.0 14 105259674.0 0 0 UNEVALUABLE UNEVALUABLE
659_bD1 POC1B SUCO chr12 89433123 chr1 172608791 BND CALL_659_bD1_18 FP call 0.9971 0 0 0 655 hg19 12 89826900.0 1 172577931.0 0 0 UNEVALUABLE UNEVALUABLE
659_bD1 intergenic(VRK1,BCL11B) AKT1 chr14 97398895 chr14 104793316 BND CALL_659_bD1_19 FP call 0.1829 0 0 0 71 hg19 14 97865232.0 14 105259653.0 0 0 UNEVALUABLE UNEVALUABLE
659_bD1 TMEM121 intergenic(LRIG3,SLC16A7) chr14 105529143 chr12 59524860 BND CALL_659_bD1_20 TP_DUP call 0.9966 0 0 4285 0 hg19 14 105995480.0 12 59918641.0 0 0 UNEVALUABLE UNEVALUABLE
659_bD1 INTS2 intergenic(MED13,EFCAB3) chr17 61919455 chr17 62071046 BND CALL_659_bD1_21 TP call 0.9949 0 0 285 0 hg19 17 59996816.0 17 60148407.0 0 0 UNEVALUABLE UNEVALUABLE
659_bD1 INTS2 intergenic(GBP6,LRRC8B) chr17 61919462 chr1 89432268 BND CALL_659_bD1_22 FP call 0.2898 0 0 285 1 hg19 17 59996823.0 1 89897827.0 0 1 UNEVALUABLE UNEVALUABLE
659_bD1 WDR4 COL18A1 chr21 42849440 chr21 45455942 DUP CALL_659_bD1_23 FP call 0.0556 0 0 96 4935 hg19 21 44269550.0 21 46875856.0 0 96 EVALUABLE BAM_REFUTED
659_bD1 PPARG GSX1 chr3 12310387 chr13 27792789 TRANSLOCATION TRUTH_659_bD1_24 TRUTH truth 21.0 0 0 5 1755 hg19 3 12351886.0 13 28366926.0 0 5 UNEVALUABLE UNEVALUABLE
659_bD1 ZNF518B intergenic(HS3ST1,RAB28) chr4 10445475 chr4 11469652 INVERSION TRUTH_659_bD1_25 TRUTH truth 98.0 0 0 3853 1 hg19 4 10447099.0 4 11471276.0 0 1 UNEVALUABLE UNEVALUABLE
659_bD1 PLAA intergenic(PARP11,CCND2) chr9 26935168 chr12 4118735 TRANSLOCATION TRUTH_659_bD1_26 TRUTH truth 129.0 0 0 578 0 hg19 9 26935166.0 12 4227901.0 0 0 UNEVALUABLE UNEVALUABLE
659_bD1 ARHGAP42 CBLN1 chr11 100831094 chr16 49281257 TRANSLOCATION TRUTH_659_bD1_27 TRUTH truth 145.0 0 0 0 2070 hg19 11 100701825.0 16 49315168.0 0 0 UNEVALUABLE UNEVALUABLE
659_bD1 ERC1 ETV6 chr12 1169817 chr12 11878030 DUPLICATION TRUTH_659_bD1_28 TRUTH truth 529.0 0 0 2 10991 hg19 12 1278983.0 12 12030964.0 0 2 UNEVALUABLE UNEVALUABLE
659_bD1 ATN1 intergenic(ATN1,C12orf57) chr12 6941551 chr12 6942586 INVERSION TRUTH_659_bD1_29 TRUTH truth 226.0 12 0 1897 14 hg19 12 7050714.0 12 7051749.0 12 14 UNEVALUABLE UNEVALUABLE
659_bD1 ETV6 BCL2L14 chr12 11885544 chr12 12156104 DUPLICATION TRUTH_659_bD1_30 TRUTH truth 1104.0 0 0 12577 371 hg19 12 12038478.0 12 12309038.0 0 371 EVALUABLE BAM_REFUTED
659_bD1 MMP19 intergenic(EPYC,KERA) chr12 55837948 chr12 91022629 INVERSION TRUTH_659_bD1_31 TRUTH truth 379.0 0 0 1913 0 hg19 12 56231732.0 12 91416406.0 0 0 UNEVALUABLE UNEVALUABLE
659_bD1 MMP19 SRGAP1 chr12 55838655 chr12 64080181 INVERSION TRUTH_659_bD1_32 TRUTH truth 76.0 0 0 1263 489 hg19 12 56232439.0 12 64473961.0 0 489 EVALUABLE BAM_REFUTED
659_bD1 LRP1 MGAT4C chr12 57177460 chr12 86013458 DUPLICATION TRUTH_659_bD1_33 TRUTH truth 641.0 0 0 1894 385 hg19 12 57571243.0 12 86407236.0 0 385 EVALUABLE BAM_REFUTED
659_bD1 MBD6 intergenic(KITLG,DUSP6) chr12 57528384 chr12 89000778 INVERSION TRUTH_659_bD1_34 TRUTH truth 133.0 0 0 4357 2 hg19 12 57922167.0 12 89394555.0 0 2 UNEVALUABLE UNEVALUABLE
659_bD1 intergenic(LRIG3,SLC16A7) TMEM121 chr12 59524859 chr14 105529142 TRANSLOCATION TRUTH_659_bD1_35 TRUTH truth 158.0 0 0 0 4282 hg19 12 59918640.0 14 105995479.0 0 0 UNEVALUABLE UNEVALUABLE
659_bD1 intergenic(MSRB3,HMGA2) MYRFL chr12 65513265 chr12 69891079 INVERSION TRUTH_659_bD1_36 TRUTH truth 906.0 0 0 0 685 hg19 12 65907045.0 12 70284859.0 0 0 UNEVALUABLE UNEVALUABLE
659_bD1 CPM ANKS1B chr12 68893770 chr12 99806648 DELETION TRUTH_659_bD1_37 TRUTH truth 54.0 0 0 4 1470 hg19 12 69287550.0 12 100200426.0 0 4 UNEVALUABLE UNEVALUABLE
659_bD1 LYZ intergenic(DCN,BTG1) chr12 69352249 chr12 91825029 DUPLICATION TRUTH_659_bD1_38 TRUTH truth 62.0 0 0 361 2 hg19 12 69746029.0 12 92218805.0 0 2 UNEVALUABLE UNEVALUABLE
659_bD1 INTS2 intergenic(MED13,EFCAB3) chr17 61919454 chr17 62071045 INVERSION TRUTH_659_bD1_39 TRUTH truth 35.0 0 0 285 0 hg19 17 59996815.0 17 60148406.0 0 0 UNEVALUABLE UNEVALUABLE
659_bTq intergenic(FZD8,ANKRD30A) NAMPT chr10 36522957 chr7 106250857 BND CALL_659_bTq_0 FP call 0.0 0 0 1901 390 hg19 10 36811885.0 7 105891303.0 0 390 EVALUABLE BAM_REFUTED
659_bTq CAPN15 intergenic(GRIN2A,ATF7IP2) chr16 547647 chr16 10315255 DEL CALL_659_bTq_1 TP call 0.8511 0 0 3750 18 hg19 16 597647.0 16 10409112.0 0 18 UNEVALUABLE UNEVALUABLE
659_bTq CAPN15 intergenic(GRIN2A,ATF7IP2) chr16 547646 chr16 10315254 DELETION TRUTH_659_bTq_2 TRUTH truth 55.0 0 0 3750 18 hg19 16 597646.0 16 10409111.0 0 18 UNEVALUABLE UNEVALUABLE
659_buD PRKCZ SKI chr1 2156345 chr1 2229316 DUP CALL_659_buD_0 TP call 0.9422 0 0 656 4003 hg19 1 2087784.0 1 2160755.0 0 656 EVALUABLE BAM_REFUTED
659_buD AKT3 intergenic(ZBTB18,C1orf100) chr1 243500596 chr1 244118703 DUP CALL_659_buD_1 FP call 0.0005 0 0 8 0 hg19 1 243663898.0 1 244282005.0 0 0 UNEVALUABLE UNEVALUABLE
659_buD HLA-C HLA-F chr6 31271374 chr6 29724049 BND CALL_659_buD_2 FP call 0.0 0 0 11631 4527 hg19 6 31239151.0 6 29691826.0 0 4527 EVALUABLE BAM_REFUTED
659_buD SLC22A17 NSDHL chr14 23348238 chrX 152855618 BND CALL_659_buD_3 TP call 0.8788 0 0 3373 7 hg19 14 23817447.0 X 152024162.0 0 7 UNEVALUABLE UNEVALUABLE
659_buD TMEM179 BRF1 chr14 104559188 chr14 105217744 DUP CALL_659_buD_4 FP call 0.7275 0 0 4 2626 hg19 14 105025525.0 14 105684081.0 0 4 UNEVALUABLE UNEVALUABLE
659_buD intergenic(INO80,EXD1) MGA chr15 41177115 chr15 41696833 DUP CALL_659_buD_5 FP call 0.1414 0 0 45 2670 hg19 15 41469313.0 15 41989031.0 0 45 EVALUABLE BAM_REFUTED
659_buD TMPRSS2 MALRD1 chr21 41506930 chr10 19707871 BND CALL_659_buD_6 FP call 0.0 0 0 15528 0 hg19 21 42878857.0 10 19996800.0 0 0 UNEVALUABLE UNEVALUABLE
659_buD PRKCZ SKI chr1 2156344 chr1 2229315 DUPLICATION TRUTH_659_buD_7 TRUTH truth 53.0 0 0 656 4002 hg19 1 2087783.0 1 2160754.0 0 656 EVALUABLE BAM_REFUTED
659_buD SLC22A17 NSDHL chr14 23348237 chrX 152855617 TRANSLOCATION TRUTH_659_buD_8 TRUTH truth 50.0 0 0 3379 7 hg19 14 23817446.0 X 152024161.0 0 7 UNEVALUABLE UNEVALUABLE
659_bu4 TRIT1 PPARG chr1 39854588 chr3 12330459 BND CALL_659_bu4_0 FP call 0.0 0 0 128 1 hg19 1 40320260.0 3 12371958.0 0 1 UNEVALUABLE UNEVALUABLE
659_bu4 ARHGEF2 NF1 chr1 155957214 chr17 31196094 BND CALL_659_bu4_1 FP call 0.7472 0 0 450 0 hg19 1 155927005.0 17 29523112.0 0 0 UNEVALUABLE UNEVALUABLE
659_bu4 intergenic(AKT3,ZBTB18) BOD1L1 chr1 243900412 chr4 13608625 BND CALL_659_bu4_2 FP call 0.0758 0 0 0 648 hg19 1 244063714.0 4 13610249.0 0 0 UNEVALUABLE UNEVALUABLE
659_bu4 KANSL3 ANO4 chr2 96611135 chr12 101108189 BND CALL_659_bu4_3 TP call 0.9501 0 0 1141 2 hg19 2 97276872.0 12 101501967.0 0 2 UNEVALUABLE UNEVALUABLE
659_bu4 ZRANB3 PDE1A chr2 135162803 chr2 182368658 DUP CALL_659_bu4_4 FP call 0.9693 0 0 1243 0 hg19 2 135920373.0 2 183233385.0 0 0 UNEVALUABLE UNEVALUABLE
659_bu4 ZRANB3 SRRM2 chr2 135213581 chr16 2760453 BND CALL_659_bu4_5 TP call 0.3628 0 0 0 1213 hg19 2 135971151.0 16 2810454.0 0 0 UNEVALUABLE UNEVALUABLE
659_bu4 LRP1B CXCR4 chr2 141190398 chr2 136117960 BND CALL_659_bu4_6 FP call 0.8001 0 0 0 908 hg19 2 141947967.0 2 136875530.0 0 0 UNEVALUABLE UNEVALUABLE
659_bu4 intergenic(TMEFF2,SLC39A10) SPAG9 chr2 192719884 chr17 51006177 BND CALL_659_bu4_7 TP call 0.2612 0 0 2 788 hg19 2 193584610.0 17 49083538.0 0 2 UNEVALUABLE UNEVALUABLE
659_bu4 PARD3B MNDA chr2 205446182 chr1 158843980 BND CALL_659_bu4_8 TP_DUP call 0.9924 0 0 0 1257 hg19 2 206310906.0 1 158813770.0 0 0 UNEVALUABLE UNEVALUABLE
659_bu4 intergenic(PTH2R,MAP2) RASEF chr2 208889023 chr9 83062494 BND CALL_659_bu4_9 TP call 0.9279 0 0 1 2263 hg19 2 209753747.0 9 85677409.0 0 1 UNEVALUABLE UNEVALUABLE
659_bu4 IRS1 intergenic(ASB18,IQCA1) chr2 226796665 chr2 236290155 DEL CALL_659_bu4_10 FP call 0.0 0 0 4512 2 hg19 2 227661381.0 2 237198798.0 0 2 UNEVALUABLE UNEVALUABLE
659_bu4 GAK GHITM chr4 870873 chr10 84154381 BND CALL_659_bu4_11 TP call 0.8862 0 0 824 20 hg19 4 864661.0 10 85914137.0 0 20 EVALUABLE BAM_REFUTED
659_bu4 SMIM14 EDRF1 chr4 39622122 chr10 125740565 BND CALL_659_bu4_12 FP call 0.0 0 0 30 1388 hg19 4 39623742.0 10 127429134.0 0 30 EVALUABLE BAM_REFUTED
659_bu4 intergenic(KBTBD2,FKBP9) MDM2 chr7 32915301 chr12 68844622 BND CALL_659_bu4_13 FP call 0.0002 0 0 0 0 hg19 7 32954913.0 12 69238402.0 0 0 UNEVALUABLE UNEVALUABLE
659_bu4 intergenic(KBTBD2,FKBP9) BBS9 chr7 32955367 chr7 33146276 BND CALL_659_bu4_14 FP call 0.0004 0 0 5 492 hg19 7 32994979.0 7 33185888.0 0 5 UNEVALUABLE UNEVALUABLE
659_bu4 intergenic(GADD45G,DIRAS2) ANKRD33 chr9 89696068 chr12 51890634 BND CALL_659_bu4_15 FP call 0.852 0 0 12 4254 hg19 9 92310983.0 12 52284418.0 0 12 UNEVALUABLE UNEVALUABLE
659_bu4 intergenic(CCDC179,LUZP2) GRIN2A chr11 22971867 chr16 9757097 BND CALL_659_bu4_16 FP call 0.0 0 0 3 0 hg19 11 22993413.0 16 9850954.0 0 0 UNEVALUABLE UNEVALUABLE
659_bu4 OS9 intergenic(TRHDE,ATXN7L3B) chr12 57694830 chr12 73226422 BND CALL_659_bu4_17 FP call 0.0002 0 0 1190 8 hg19 12 58088613.0 12 73620202.0 0 8 UNEVALUABLE UNEVALUABLE
659_bu4 OS9 intergenic(KRR1,PHLDA1) chr12 57717923 chr12 75832252 DEL CALL_659_bu4_18 FP call 0.0011 0 0 1645 0 hg19 12 58111706.0 12 76226032.0 0 0 UNEVALUABLE UNEVALUABLE
659_bu4 ENSG00000257921 PTPRQ chr12 57773073 chr12 80679485 DEL CALL_659_bu4_19 FP call 0.0 0 0 2154 0 hg19 12 58166856.0 12 81073264.0 0 0 UNEVALUABLE UNEVALUABLE
659_bu4 HMGA2 SLC20A1 chr12 65867094 chr2 112660413 BND CALL_659_bu4_20 FP call 0.0135 0 0 0 653 hg19 12 66260874.0 2 113417990.0 0 0 UNEVALUABLE UNEVALUABLE
659_bu4 MDM2 ENSG00000281039 chr12 68819180 chr7 30498921 BND CALL_659_bu4_21 TP_DUP call 0.9697 0 0 20 608 hg19 12 69212960.0 7 30538537.0 0 20 EVALUABLE BAM_REFUTED
659_bu4 TSPAN8 OR51L1 chr12 71160100 chr11 4999195 BND CALL_659_bu4_22 TP_DUP call 0.9939 0 0 0 2363 hg19 12 71553880.0 11 5020425.0 0 0 UNEVALUABLE UNEVALUABLE
659_bu4 TMEM19 KRT8 chr12 71697757 chr12 52899901 BND CALL_659_bu4_23 TP_DUP call 0.9982 0 0 1755 1244 hg19 12 72091537.0 12 53293685.0 0 1244 EVALUABLE BAM_REFUTED
659_bu4 intergenic(RAB21,TBC1D15) GLIPR1L2 chr12 71809175 chr12 75410646 DUP CALL_659_bu4_24 TP call 0.6806 0 0 0 2522 hg19 12 72202955.0 12 75804426.0 0 0 UNEVALUABLE UNEVALUABLE
659_bu4 intergenic(RAB21,TBC1D15) FBXO34 chr12 71809376 chr14 55351832 BND CALL_659_bu4_25 TP call 0.8102 0 0 0 4091 hg19 12 72203156.0 14 55818550.0 0 0 UNEVALUABLE UNEVALUABLE
659_bu4 TBC1D15 NR2C1 chr12 71849767 chr12 95040539 BND CALL_659_bu4_26 TP call 0.999 0 0 287 630 hg19 12 72243547.0 12 95434315.0 0 287 EVALUABLE BAM_REFUTED
659_bu4 KCNC2 intergenic(NEDD1,TMPO) chr12 75050613 chr12 97208906 DUP CALL_659_bu4_27 FP call 0.0007 0 0 1954 2 hg19 12 75444393.0 12 97602684.0 0 2 UNEVALUABLE UNEVALUABLE
659_bu4 KCNC2 intergenic(PPFIA2,CCDC59) chr12 75050978 chr12 81768231 DEL CALL_659_bu4_28 FP call 0.004 0 0 2109 2 hg19 12 75444758.0 12 82162010.0 0 2 UNEVALUABLE UNEVALUABLE
659_bu4 KCNC2 CDK4 chr12 75133996 chr12 57750658 BND CALL_659_bu4_29 FP call 0.0 0 0 0 4436 hg19 12 75527776.0 12 58144441.0 0 0 UNEVALUABLE UNEVALUABLE
659_bu4 KCNC2 TSPAN31 chr12 75160402 chr12 57745186 BND CALL_659_bu4_30 FP call 0.0008 0 0 1 786 hg19 12 75554182.0 12 58138969.0 0 1 UNEVALUABLE UNEVALUABLE
659_bu4 intergenic(GLIPR1L2,GLIPR1) ASXL3 chr12 75444279 chr18 33743393 BND CALL_659_bu4_31 FP call 0.0007 0 0 15 3883 hg19 12 75838059.0 18 31323357.0 0 15 UNEVALUABLE UNEVALUABLE
659_bu4 OTOGL intergenic(ALX1,RASSF9) chr12 80222091 chr12 85439349 BND CALL_659_bu4_32 FP call 0.0 0 0 1056 0 hg19 12 80615871.0 12 85833127.0 0 0 UNEVALUABLE UNEVALUABLE
659_bu4 intergenic(TMTC2,SLC6A15) KRT8 chr12 84713171 chr12 52899904 BND CALL_659_bu4_33 FP call 0.9917 0 0 0 1244 hg19 12 85106950.0 12 53293688.0 0 0 UNEVALUABLE UNEVALUABLE
659_bu4 intergenic(TMPO,SLC25A3) SLC17A8 chr12 98585421 chr12 100418052 DEL CALL_659_bu4_34 FP call 0.375 0 0 25 826 hg19 12 98979199.0 12 100811830.0 0 25 EVALUABLE BAM_REFUTED
659_bu4 BLTP3B NUP107 chr12 100103256 chr12 68732673 BND CALL_659_bu4_35 FP call 0.003 0 0 400 445 hg19 12 100497034.0 12 69126453.0 0 400 EVALUABLE BAM_REFUTED
659_bu4 intergenic(BLTP3B,ACTR6) MYF5 chr12 100182365 chr12 80717109 BND CALL_659_bu4_36 TP_DUP call 0.0029 0 0 1 2674 hg19 12 100576143.0 12 81110888.0 0 1 UNEVALUABLE UNEVALUABLE
659_bu4 intergenic(YPEL2,DHX40) PDK1 chr17 59542628 chr2 172599325 BND CALL_659_bu4_37 FP call 0.8856 0 0 0 1 hg19 17 57619989.0 2 173464053.0 0 0 UNEVALUABLE UNEVALUABLE
659_bu4 PIP5K1C NINJ2 chr19 3657136 chr12 663406 BND CALL_659_bu4_38 TP_DUP call 0.8782 0 0 107 838 hg19 19 3657134.0 12 772572.0 0 107 EVALUABLE BAM_REFUTED
659_bu4 CHAF1A DNAH10 chr19 4414842 chr12 123785851 BND CALL_659_bu4_39 TP_DUP call 0.819 0 0 2 1203 hg19 19 4414839.0 12 124270398.0 0 2 UNEVALUABLE UNEVALUABLE
659_bu4 PTPRS ATAD1 chr19 5274816 chr10 87776330 BND CALL_659_bu4_40 TP_DUP call 0.7002 0 0 522 443 hg19 19 5274827.0 10 89536087.0 0 443 EVALUABLE BAM_REFUTED
659_bu4 LARGE1 ENSG00000285938 chr22 33365524 chr3 187745914 BND CALL_659_bu4_41 FP call 0.0 0 0 5 0 hg19 22 33761510.0 3 187463702.0 0 0 UNEVALUABLE UNEVALUABLE
659_bu4 MNDA PARD3B chr1 158843979 chr2 205446181 TRANSLOCATION TRUTH_659_bu4_42 TRUTH truth 57.0 0 0 1262 0 hg19 1 158813769.0 2 206310905.0 0 0 UNEVALUABLE UNEVALUABLE
659_bu4 KANSL3 ANO4 chr2 96611134 chr12 101108187 TRANSLOCATION TRUTH_659_bu4_43 TRUTH truth 42.0 0 0 1141 2 hg19 2 97276871.0 12 101501965.0 0 2 UNEVALUABLE UNEVALUABLE
659_bu4 ZRANB3 SRRM2 chr2 135213580 chr16 2760452 TRANSLOCATION TRUTH_659_bu4_44 TRUTH truth 88.0 0 0 0 1213 hg19 2 135971150.0 16 2810453.0 0 0 UNEVALUABLE UNEVALUABLE
659_bu4 intergenic(TMEFF2,SLC39A10) SPAG9 chr2 192719883 chr17 51006174 TRANSLOCATION TRUTH_659_bu4_45 TRUTH truth 23.0 0 0 2 788 hg19 2 193584609.0 17 49083535.0 0 2 UNEVALUABLE UNEVALUABLE
659_bu4 intergenic(PTH2R,MAP2) RASEF chr2 208889022 chr9 83062493 TRANSLOCATION TRUTH_659_bu4_46 TRUTH truth 97.0 0 0 1 2263 hg19 2 209753746.0 9 85677408.0 0 1 UNEVALUABLE UNEVALUABLE
659_bu4 GAK GHITM chr4 870872 chr10 84154380 TRANSLOCATION TRUTH_659_bu4_47 TRUTH truth 28.0 0 0 824 20 hg19 4 864660.0 10 85914136.0 0 20 EVALUABLE BAM_REFUTED
659_bu4 ENSG00000281039 MDM2 chr7 30498920 chr12 68819179 TRANSLOCATION TRUTH_659_bu4_48 TRUTH truth 41.0 0 0 608 20 hg19 7 30538536.0 12 69212959.0 0 20 EVALUABLE BAM_REFUTED
659_bu4 ATAD1 PTPRS chr10 87776329 chr19 5274815 TRANSLOCATION TRUTH_659_bu4_49 TRUTH truth 41.0 0 0 443 526 hg19 10 89536086.0 19 5274826.0 0 443 EVALUABLE BAM_REFUTED
659_bu4 OR51L1 TSPAN8 chr11 4999194 chr12 71160099 TRANSLOCATION TRUTH_659_bu4_50 TRUTH truth 30.0 0 0 2361 0 hg19 11 5020424.0 12 71553879.0 0 0 UNEVALUABLE UNEVALUABLE
659_bu4 NINJ2 PIP5K1C chr12 663405 chr19 3657135 TRANSLOCATION TRUTH_659_bu4_51 TRUTH truth 66.0 0 0 838 107 hg19 12 772571.0 19 3657133.0 0 107 EVALUABLE BAM_REFUTED
659_bu4 intergenic(KRT78,KRT8) ENSG00000258064 chr12 52873083 chr12 71697475 DUPLICATION TRUTH_659_bu4_52 TRUTH truth 1173.0 0 0 1 1819 hg19 12 53266867.0 12 72091255.0 0 1 UNEVALUABLE UNEVALUABLE
659_bu4 KRT8 ENSG00000258064 chr12 52899899 chr12 71697755 INVERSION TRUTH_659_bu4_53 TRUTH truth 594.0 0 0 1243 1755 hg19 12 53293683.0 12 72091535.0 0 1243 EVALUABLE BAM_REFUTED
659_bu4 intergenic(RAB21,TBC1D15) GLIPR1L2 chr12 71809174 chr12 75410645 DUPLICATION TRUTH_659_bu4_54 TRUTH truth 35.0 0 0 0 2522 hg19 12 72202954.0 12 75804425.0 0 0 UNEVALUABLE UNEVALUABLE
659_bu4 intergenic(RAB21,TBC1D15) FBXO34 chr12 71809375 chr14 55351831 TRANSLOCATION TRUTH_659_bu4_55 TRUTH truth 39.0 0 0 0 4087 hg19 12 72203155.0 14 55818549.0 0 0 UNEVALUABLE UNEVALUABLE
659_bu4 TBC1D15 NR2C1 chr12 71849766 chr12 95040538 INVERSION TRUTH_659_bu4_56 TRUTH truth 294.0 0 0 287 630 hg19 12 72243546.0 12 95434314.0 0 287 EVALUABLE BAM_REFUTED
659_bu4 MYF5 intergenic(BLTP3B,ACTR6) chr12 80717104 chr12 100182368 INVERSION TRUTH_659_bu4_57 TRUTH truth 36.0 0 0 2668 1 hg19 12 81110883.0 12 100576146.0 0 1 UNEVALUABLE UNEVALUABLE
659_bu4 DNAH10 CHAF1A chr12 123785850 chr19 4414841 TRANSLOCATION TRUTH_659_bu4_58 TRUTH truth 85.0 0 0 1203 2 hg19 12 124270397.0 19 4414838.0 0 2 UNEVALUABLE UNEVALUABLE
659_bwh GABRD intergenic(SKI,MORN1) chr1 2024988 chr1 2317281 BND CALL_659_bwh_0 TP call 0.9998 0 0 1149 2 hg19 1 1956427.0 1 2248720.0 0 2 UNEVALUABLE UNEVALUABLE
659_bwh GABRD NFIA chr1 2025337 chr1 61331080 DEL CALL_659_bwh_1 FP call 0.3772 0 0 1843 1 hg19 1 1956776.0 1 61796752.0 0 1 UNEVALUABLE UNEVALUABLE
659_bwh MTRR CIT chr5 7903118 chr12 119718247 BND CALL_659_bwh_2 TP call 0.3435 0 0 2 1691 hg19 5 7903231.0 12 120156052.0 0 2 UNEVALUABLE UNEVALUABLE
659_bwh CDH18 CIT chr5 20250179 chr12 119718321 BND CALL_659_bwh_3 TP call 0.1429 0 0 8 1903 hg19 5 20250288.0 12 120156126.0 0 8 UNEVALUABLE UNEVALUABLE
659_bwh intergenic(HLA-G,HLA-A) HLA-A chr6 29932107 chr6 29943435 DEL CALL_659_bwh_4 FP call 0.0001 0 0 0 9474 hg19 6 29899884.0 6 29911212.0 0 0 UNEVALUABLE UNEVALUABLE
659_bwh ABCD2 intergenic(KIF21A,ABCD2) chr12 39573780 chr12 39477497 BND CALL_659_bwh_5 FP call 0.1073 0 0 833 1 hg19 12 39967582.0 12 39871299.0 0 1 UNEVALUABLE UNEVALUABLE
659_bwh intergenic(LRIG3,SLC16A7) TBX3 chr12 59381420 chr12 114674291 DUP CALL_659_bwh_6 FP call 0.6121 0 0 4 9136 hg19 12 59775201.0 12 115112096.0 0 4 UNEVALUABLE UNEVALUABLE
659_bwh CSRP2 BICDL1 chr12 76878568 chr12 120061825 DUP CALL_659_bwh_7 TP call 0.8807 0 0 0 383 hg19 12 77272348.0 12 120499629.0 0 0 UNEVALUABLE UNEVALUABLE
659_bwh PAGE2B PAGE2 chrX 55077568 chrX 55091382 DUP CALL_659_bwh_8 FP call 0.0001 0 0 658 606 hg19 X 55104001.0 X 55117815.0 0 606 EVALUABLE BAM_REFUTED
659_bwh GABRD intergenic(SKI,MORN1) chr1 2024985 chr1 2317280 INVERSION TRUTH_659_bwh_9 TRUTH truth 277.0 0 0 1148 2 hg19 1 1956424.0 1 2248719.0 0 2 UNEVALUABLE UNEVALUABLE
659_bwh MTRR CIT chr5 7903117 chr12 119718246 TRANSLOCATION TRUTH_659_bwh_10 TRUTH truth 42.0 0 0 2 1691 hg19 5 7903230.0 12 120156051.0 0 2 UNEVALUABLE UNEVALUABLE
659_bwh CDH18 CIT chr5 20250217 chr12 119718383 TRANSLOCATION TRUTH_659_bwh_11 TRUTH truth 23.0 0 0 9 1964 hg19 5 20250326.0 12 120156188.0 0 9 UNEVALUABLE UNEVALUABLE
659_bwh CSRP2 BICDL1 chr12 76878567 chr12 120061824 DUPLICATION TRUTH_659_bwh_12 TRUTH truth 31.0 0 0 0 383 hg19 12 77272347.0 12 120499628.0 0 0 UNEVALUABLE UNEVALUABLE
659_c95 intergenic(ERMN,CYTIP) ZNF827 chr2 157389446 chr4 145774635 BND CALL_659_c95_0 FP call 0.997 0 0 2 1120 hg19 2 158245958.0 4 146695787.0 0 2 UNEVALUABLE UNEVALUABLE
659_c95 NFKBIZ ZPLD1 chr3 101849680 chr3 102248963 DUP CALL_659_c95_1 FP call 0.0493 0 0 765 0 hg19 3 101568524.0 3 101967807.0 0 0 UNEVALUABLE UNEVALUABLE
659_c95 DNAH10 intergenic(BFSP2,CDV3) chr12 123803762 chr3 133569088 BND CALL_659_c95_2 TP_DUP call 0.0005 0 0 850 0 hg19 12 124288309.0 3 133287932.0 0 0 UNEVALUABLE UNEVALUABLE
659_c95 GLT1D1 TRPC1 chr12 128968958 chr3 142736466 BND CALL_659_c95_3 TP_DUP call 0.7633 0 0 0 763 hg19 12 129453503.0 3 142455308.0 0 0 UNEVALUABLE UNEVALUABLE
659_c95 NME2 SPAG9 chr17 51170257 chr17 50995183 BND CALL_659_c95_4 FP call 0.237 0 0 622 967 hg19 17 49247618.0 17 49072544.0 0 622 EVALUABLE BAM_REFUTED
659_c95 CA10 NGFR chr17 52071020 chr17 49506513 BND CALL_659_c95_5 TP_DUP call 0.9558 0 0 0 2227 hg19 17 50148380.0 17 47583875.0 0 0 UNEVALUABLE UNEVALUABLE
659_c95 intergenic(GAA,EIF4A3) CCDC40 chr17 80134017 chr17 80090252 BND CALL_659_c95_6 FP call 0.0001 0 0 0 4930 hg19 17 78107816.0 17 78064051.0 0 0 UNEVALUABLE UNEVALUABLE
659_c95 intergenic(DUS1L,FASN) FASN chr17 82068041 chr17 82079514 DEL CALL_659_c95_7 FP call 0.4685 0 0 16 2832 hg19 17 80025917.0 17 80037390.0 0 16 UNEVALUABLE UNEVALUABLE
659_c95 DYM ZNF827 chr18 49458574 chr4 145765087 BND CALL_659_c95_8 TP_DUP call 0.9497 0 0 0 1992 hg19 18 46984944.0 4 146686239.0 0 0 UNEVALUABLE UNEVALUABLE
659_c95 intergenic(LILRB4,KIR3DL3) SYT5 chr19 54675006 chr19 55175252 DUP CALL_659_c95_9 TP call 0.6269 0 0 3 2547 hg19 19 55186455.0 19 55686620.0 0 3 UNEVALUABLE UNEVALUABLE
659_c95 SUSD2 UPB1 chr22 24184863 chr22 24511231 DUP CALL_659_c95_10 TP call 0.7601 0 0 1713 679 hg19 22 24580831.0 22 24907199.0 0 679 EVALUABLE BAM_REFUTED
659_c95 MAPK11 PPP6R2 chr22 50265611 chr22 50358869 DUP CALL_659_c95_11 TP call 0.6508 0 0 1779 10 hg19 22 50704040.0 22 50797298.0 0 10 UNEVALUABLE UNEVALUABLE
659_c95 intergenic(BFSP2,CDV3) DNAH10 chr3 133569087 chr12 123803760 TRANSLOCATION TRUTH_659_c95_12 TRUTH truth 70.0 0 0 0 850 hg19 3 133287931.0 12 124288307.0 0 0 UNEVALUABLE UNEVALUABLE
659_c95 TRPC1 GLT1D1 chr3 142736465 chr12 128968957 TRANSLOCATION TRUTH_659_c95_13 TRUTH truth 50.0 0 0 763 0 hg19 3 142455307.0 12 129453502.0 0 0 UNEVALUABLE UNEVALUABLE
659_c95 ZNF827 DYM chr4 145765084 chr18 49458573 TRANSLOCATION TRUTH_659_c95_14 TRUTH truth 59.0 0 0 1986 0 hg19 4 146686236.0 18 46984943.0 0 0 UNEVALUABLE UNEVALUABLE
659_c95 NGFR CA10 chr17 49506510 chr17 52071021 INVERSION TRUTH_659_c95_15 TRUTH truth 42.0 0 0 2227 0 hg19 17 47583872.0 17 50148381.0 0 0 UNEVALUABLE UNEVALUABLE
659_c95 intergenic(LILRB4,KIR3DL3) SYT5 chr19 54675005 chr19 55175251 DUPLICATION TRUTH_659_c95_16 TRUTH truth 34.0 0 0 3 2541 hg19 19 55186454.0 19 55686619.0 0 3 UNEVALUABLE UNEVALUABLE
659_c95 SUSD2 UPB1 chr22 24184862 chr22 24511230 DUPLICATION TRUTH_659_c95_17 TRUTH truth 47.0 0 0 1717 679 hg19 22 24580830.0 22 24907198.0 0 679 EVALUABLE BAM_REFUTED
659_c95 MAPK11 PPP6R2 chr22 50265610 chr22 50358868 DUPLICATION TRUTH_659_c95_18 TRUTH truth 34.0 0 0 1779 10 hg19 22 50704039.0 22 50797297.0 0 10 UNEVALUABLE UNEVALUABLE
659_cTi RASSF3 RAP1B chr12 64549863 chr12 68652030 DEL CALL_659_cTi_0 FP call 0.4664 0 0 1 241 hg19 12 64943643.0 12 69045810.0 0 1 UNEVALUABLE UNEVALUABLE
659_cTi intergenic(RAP1B,NUP107) NUP107 chr12 68685637 chr12 68719403 DEL CALL_659_cTi_1 FP call 0.1997 0 0 15 517 hg19 12 69079417.0 12 69113183.0 0 15 UNEVALUABLE UNEVALUABLE
659_cTi TSPAN8 ENSG00000289027 chr12 71175994 chr7 92241028 BND CALL_659_cTi_2 TP_DUP call 0.0747 0 0 1 308 hg19 12 71569774.0 7 91870342.0 0 1 UNEVALUABLE UNEVALUABLE
659_cTi FBXL19 ORAI3 chr16 30946909 chr16 30949293 DEL CALL_659_cTi_3 FP call 0.0323 0 0 1835 656 hg19 16 30958230.0 16 30960614.0 0 656 EVALUABLE BAM_REFUTED
659_cTi ENSG00000289027 TSPAN8 chr7 92241027 chr12 71175993 TRANSLOCATION TRUTH_659_cTi_4 TRUTH truth 72.0 0 0 308 1 hg19 7 91870341.0 12 71569773.0 0 1 UNEVALUABLE UNEVALUABLE
659_cYX intergenic(RPL14,ZNF619) RPL14 chr3 40475629 chr3 40457902 BND CALL_659_cYX_0 FP call 0.3517 0 0 40 946 hg19 3 40517120.0 3 40499393.0 0 40 EVALUABLE BAM_REFUTED
659_cYX HLA-C HLA-B chr6 31270933 chr6 31356077 DUP CALL_659_cYX_1 FP call 0.0004 9 0 12569 9628 hg19 6 31238710.0 6 31323854.0 9 9628 EVALUABLE BAM_CONFIRMED
659_cYX NR4A3 EWSR1 chr9 99826260 chr22 29298565 BND CALL_659_cYX_2 TP call 0.9913 0 0 10197 5493 hg19 9 102588542.0 22 29694555.0 0 5493 EVALUABLE BAM_REFUTED
659_cYX NR4A3 EWSR1 chr9 99826259 chr22 29298564 TRANSLOCATION TRUTH_659_cYX_3 TRUTH truth 223.0 0 0 10192 5499 hg19 9 102588541.0 22 29694554.0 0 5499 EVALUABLE BAM_REFUTED
659_dAn intergenic(COL16A1,ADGRB2) ACOX1 chr1 31710929 chr17 75953538 BND CALL_659_dAn_0 TP call 0.9753 0 0 6 892 hg19 1 32176530.0 17 73949619.0 0 6 UNEVALUABLE UNEVALUABLE
659_dAn intergenic(AMY1C,PRMT6) KIF5B chr1 106257019 chr10 32024086 BND CALL_659_dAn_1 FP call 0.0 0 0 18 11 hg19 1 106799641.0 10 32313014.0 0 11 UNEVALUABLE UNEVALUABLE
659_dAn NTRK1 intergenic(COP1,PAPPA2) chr1 156873018 chr1 176371811 DUP CALL_659_dAn_2 FP call 0.0043 0 0 8303 2 hg19 1 156842810.0 1 176340947.0 0 2 UNEVALUABLE UNEVALUABLE
659_dAn NTRK1 intergenic(HLX,DUSP10) chr1 156873018 chr1 221167601 DUP CALL_659_dAn_3 FP call 0.0003 0 0 8303 0 hg19 1 156842810.0 1 221340943.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn NTRK1 intergenic(ARHGAP20,POU2AF2) chr1 156873019 chr11 111163896 BND CALL_659_dAn_4 FP call 0.0 0 0 8309 6 hg19 1 156842811.0 11 111034620.0 0 6 UNEVALUABLE UNEVALUABLE
659_dAn PRG4 TPR chr1 186301632 chr1 186322184 DUP CALL_659_dAn_5 FP call 0.001 0 0 844 990 hg19 1 186270764.0 1 186291316.0 0 844 EVALUABLE BAM_REFUTED
659_dAn intergenic(DUSP10,HHIPL2) TRAF3 chr1 221920782 chr14 102906152 BND CALL_659_dAn_6 FP call 0.0001 0 0 13 1731 hg19 1 222094124.0 14 103372489.0 0 13 UNEVALUABLE UNEVALUABLE
659_dAn RDH14 NT5C1B-RDH14 chr2 18555420 chr2 18569691 DEL CALL_659_dAn_7 FP call 0.0008 0 0 4732 0 hg19 2 18736686.0 2 18750957.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn MAP4K3 intergenic(OR9A2,OR6V1) chr2 39309495 chr7 143044271 BND CALL_659_dAn_8 FP call 0.0 0 0 227 6 hg19 2 39536636.0 7 142741372.0 0 6 UNEVALUABLE UNEVALUABLE
659_dAn LRRTM4 NTRK3 chr2 77476984 chr15 88010768 BND CALL_659_dAn_9 FP call 0.0 0 0 1 1 hg19 2 77704110.0 15 88553999.0 0 1 UNEVALUABLE UNEVALUABLE
659_dAn ANKRD36 ANKRD36B chr2 97113928 chr2 97589542 BND CALL_659_dAn_10 FP call 0.0001 5 0 2593 1377 hg19 2 97779665.0 2 98206005.0 5 1377 EVALUABLE BAM_CONFIRMED
659_dAn intergenic(POU3F3,MRPS9) PRDM1 chr2 104979474 chr6 106105364 BND CALL_659_dAn_11 FP call 0.0 0 0 0 15147 hg19 2 105595932.0 6 106553239.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn intergenic(ARL6IP6,RPRM) TBK1 chr2 152821177 chr12 64460271 BND CALL_659_dAn_12 TP call 0.7538 0 0 9 462 hg19 2 153677691.0 12 64854051.0 0 9 UNEVALUABLE UNEVALUABLE
659_dAn intergenic(KCNJ3,NR4A2) STRC chr2 156078243 chr15 43610951 BND CALL_659_dAn_13 FP call 0.0002 0 0 0 676 hg19 2 156934755.0 15 43903149.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn ABCA12 intergenic(TNP1,TNS1) chr2 215019392 chr2 217147117 DUP CALL_659_dAn_14 FP call 0.9885 0 0 1275 0 hg19 2 215884116.0 2 218011840.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn PPARG intergenic(SLC25A46,TSLP) chr3 12330421 chr5 110792903 BND CALL_659_dAn_15 FP call 0.0001 0 0 0 2 hg19 3 12371920.0 5 110128603.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn PPARG GRIP2 chr3 12370616 chr3 14498627 DUP CALL_659_dAn_16 FP call 0.0 0 0 1 0 hg19 3 12412115.0 3 14540135.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn NUP210 CXCL17 chr3 13397361 chr19 42428411 BND CALL_659_dAn_17 FP call 0.0003 0 0 877 280 hg19 3 13438861.0 19 42932563.0 0 280 EVALUABLE BAM_REFUTED
659_dAn intergenic(PROK2,RYBP) NTRK1 chr3 72365857 chr1 156873019 BND CALL_659_dAn_18 FP call 0.0001 0 0 32 8309 hg19 3 72415008.0 1 156842811.0 0 32 EVALUABLE BAM_REFUTED
659_dAn LSAMP DICER1 chr3 116798041 chr14 95089098 BND CALL_659_dAn_19 FP call 0.0 0 0 0 0 hg19 3 116516888.0 14 95555435.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn ENSG00000282278 FBN2 chr4 54269535 chr5 128333840 BND CALL_659_dAn_20 FP call 0.0 0 0 10373 2 hg19 4 55135702.0 5 127669532.0 0 2 UNEVALUABLE UNEVALUABLE
659_dAn ENSG00000282278 RBBP8 chr4 54269535 chr18 22808180 BND CALL_659_dAn_21 FP call 0.0 0 0 10373 1 hg19 4 55135702.0 18 20388143.0 0 1 UNEVALUABLE UNEVALUABLE
659_dAn KIT PTPN13 chr4 54740450 chr4 86799693 DEL CALL_659_dAn_22 FP call 0.0 0 0 0 242 hg19 4 55606616.0 4 87720846.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn RASGEF1B BCL2 chr4 81626932 chr18 63128464 BND CALL_659_dAn_23 FP call 0.0 0 0 4 9050 hg19 4 82548086.0 18 60795697.0 0 4 UNEVALUABLE UNEVALUABLE
659_dAn MAPK10 NRG1 chr4 86103076 chr8 32738427 BND CALL_659_dAn_24 FP call 0.0 0 0 208 0 hg19 4 87024229.0 8 32595945.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn DKK2 NTRK1 chr4 106961566 chr1 156873020 BND CALL_659_dAn_25 FP call 0.0004 0 0 5 8322 hg19 4 107882723.0 1 156842812.0 0 5 UNEVALUABLE UNEVALUABLE
659_dAn BASP1 IKZF3 chr5 17208429 chr17 39760906 BND CALL_659_dAn_26 FP call 0.0 0 0 49 14 hg19 5 17208538.0 17 37917159.0 0 14 UNEVALUABLE UNEVALUABLE
659_dAn intergenic(SNX18,ESM1) ESM1 chr5 54975294 chr5 54979372 DUP CALL_659_dAn_27 TP call 0.9786 0 0 3 369 hg19 5 54271122.0 5 54275200.0 0 3 UNEVALUABLE UNEVALUABLE
659_dAn DEPDC1B intergenic(PLPP1,SLC38A9) chr5 60597829 chr5 55605477 BND CALL_659_dAn_28 TP_DUP call 0.96 0 0 804 35 hg19 5 59893656.0 5 54901305.0 0 35 EVALUABLE BAM_REFUTED
659_dAn MAN2A1 S1PR2 chr5 109712047 chr19 10221918 BND CALL_659_dAn_29 FP call 0.0 0 0 0 13 hg19 5 109047748.0 19 10332594.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn CDKL3 NRG1 chr5 134297946 chr8 32738446 BND CALL_659_dAn_30 FP call 0.0 0 0 755 0 hg19 5 133633637.0 8 32595964.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn BLOC1S5-TXNDC5 NTRK3 chr6 7961855 chr15 87987526 BND CALL_659_dAn_31 FP call 0.0 0 0 25 0 hg19 6 7962088.0 15 88530757.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn SLC17A1 intergenic(ZNF184,H2BC13) chr6 25819149 chr6 27641639 DEL CALL_659_dAn_32 FP call 0.0001 0 0 841 5 hg19 6 25819377.0 6 27609418.0 0 5 UNEVALUABLE UNEVALUABLE
659_dAn SMAP1 intergenic(B3GAT2,OGFRL1) chr6 70861977 chr6 71136438 BND CALL_659_dAn_33 FP call 0.0001 0 0 1230 1 hg19 6 71571680.0 6 71846141.0 0 1 UNEVALUABLE UNEVALUABLE
659_dAn MDN1 intergenic(DUSP4,SARAF) chr6 89662883 chr8 29682293 BND CALL_659_dAn_34 FP call 0.0365 0 0 952 2 hg19 6 90372602.0 8 29539809.0 0 2 UNEVALUABLE UNEVALUABLE
659_dAn ENSG00000282218 NELL2 chr6 117331917 chr12 44685503 BND CALL_659_dAn_35 FP call 0.0 0 0 2365 2 hg19 6 117653080.0 12 45079286.0 0 2 UNEVALUABLE UNEVALUABLE
659_dAn THEMIS intergenic(PTPRM,RAB12) chr6 127900878 chr18 8605381 BND CALL_659_dAn_36 FP call 0.0052 0 0 453 3 hg19 6 128222023.0 18 8605379.0 0 3 UNEVALUABLE UNEVALUABLE
659_dAn HIVEP2 CTPS2 chr6 142944924 chrX 16668816 BND CALL_659_dAn_37 FP call 0.0 0 0 2 13 hg19 6 143266061.0 X 16686939.0 0 2 UNEVALUABLE UNEVALUABLE
659_dAn intergenic(MRPL32,HECW1) UBR5 chr7 43101343 chr8 102360690 BND CALL_659_dAn_38 FP call 0.0 0 0 1 1412 hg19 7 43140942.0 8 103372918.0 0 1 UNEVALUABLE UNEVALUABLE
659_dAn intergenic(MDH2,SRRM3) HMGXB3 chr7 76199733 chr5 150024380 BND CALL_659_dAn_39 FP call 0.0001 0 0 6 1530 hg19 7 75829051.0 5 149403943.0 0 6 UNEVALUABLE UNEVALUABLE
659_dAn XRCC2 intergenic(VAT1L,CLEC3A) chr7 152646277 chr16 78002299 BND CALL_659_dAn_40 FP call 0.0 0 0 7 3 hg19 7 152343362.0 16 78036196.0 0 3 UNEVALUABLE UNEVALUABLE
659_dAn intergenic(DUSP26,UNC5D) SYNC chr8 33930518 chr1 32695794 BND CALL_659_dAn_41 FP call 0.0 0 0 2 3095 hg19 8 33788036.0 1 33161395.0 0 2 UNEVALUABLE UNEVALUABLE
659_dAn intergenic(PPDPFL,SNTG1) NTRK3 chr8 49602016 chr15 87987528 BND CALL_659_dAn_42 FP call 0.0 0 0 2 0 hg19 8 50514575.0 15 88530759.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn RRM2B PBRM1 chr8 102218832 chr3 52588519 BND CALL_659_dAn_43 FP call 0.0002 0 0 527 375 hg19 8 103231060.0 3 52622535.0 0 375 EVALUABLE BAM_REFUTED
659_dAn TEK TSHZ2 chr9 27212746 chr20 53297400 BND CALL_659_dAn_44 FP call 0.2478 0 0 1073 1 hg19 9 27212744.0 20 51913939.0 0 1 UNEVALUABLE UNEVALUABLE
659_dAn intergenic(ADARB2,PFKP) DPYSL2 chr10 2326170 chr8 26626629 BND CALL_659_dAn_45 FP call 0.0 0 0 0 560 hg19 10 2368364.0 8 26484145.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn intergenic(GATA3,CELF2) PIK3C2A chr10 9761691 chr11 17117662 BND CALL_659_dAn_46 FP call 0.0 0 0 3 487 hg19 10 9803654.0 11 17139209.0 0 3 UNEVALUABLE UNEVALUABLE
659_dAn SORCS3 intergenic(CHD1L,BCL9) chr10 105256891 chr1 147434672 BND CALL_659_dAn_47 FP call 0.0006 0 0 387 0 hg19 10 107016649.0 1 146906402.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn TCF7L2 intergenic(INHBA,GLI3) chr10 113144137 chr7 41710930 BND CALL_659_dAn_48 FP call 0.0001 0 0 1431 1 hg19 10 114903896.0 7 41750528.0 0 1 UNEVALUABLE UNEVALUABLE
659_dAn CCND1 intergenic(ANKRD12,TWSG1) chr11 69653159 chr18 9330438 BND CALL_659_dAn_49 FP call 0.0 0 0 1 0 hg19 11 69467927.0 18 9330436.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn intergenic(TENM4,FAM181B) ETV6 chr11 81557696 chr12 11778704 BND CALL_659_dAn_50 FP call 0.0041 0 0 0 0 hg19 11 81268738.0 12 11931638.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn ATM intergenic(CYRIA,RAD51AP2) chr11 108368358 chr2 17443873 BND CALL_659_dAn_51 FP call 0.0 0 0 0 0 hg19 11 108239085.0 2 17625140.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn ETV6 SLC7A14 chr12 11773238 chr3 170563380 BND CALL_659_dAn_52 FP call 0.0 0 0 15 18 hg19 12 11926172.0 3 170281169.0 0 15 UNEVALUABLE UNEVALUABLE
659_dAn ETV6 ENSG00000248993 chr12 11773242 chr6 32943761 BND CALL_659_dAn_53 FP call 0.0 0 0 15 22 hg19 12 11926176.0 6 32911538.0 0 15 UNEVALUABLE UNEVALUABLE
659_dAn ETV6 SP140 chr12 11835167 chr2 230250663 BND CALL_659_dAn_54 FP call 0.0719 0 0 0 755 hg19 12 11988101.0 2 231115378.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn ETV6 intergenic(ETV6,BCL2L14) chr12 11856338 chr12 11916363 DUP CALL_659_dAn_55 TP call 0.7982 0 0 10819 20 hg19 12 12009272.0 12 12069297.0 0 20 EVALUABLE BAM_REFUTED
659_dAn intergenic(SLCO1C1,SLCO1B3) FAT3 chr12 20799483 chr11 92890596 BND CALL_659_dAn_56 TP_DUP call 0.9073 0 0 2 3052 hg19 12 20952417.0 11 92623762.0 0 2 UNEVALUABLE UNEVALUABLE
659_dAn TAFA2 BPTF chr12 61907292 chr17 67924554 BND CALL_659_dAn_57 TP call 0.9742 0 0 1 539 hg19 12 62301073.0 17 65920670.0 0 1 UNEVALUABLE UNEVALUABLE
659_dAn intergenic(GJB6,CRYL1) PLCB2 chr13 20392631 chr15 40290061 BND CALL_659_dAn_58 FP call 0.0001 0 0 1 436 hg19 13 20966770.0 15 40582262.0 0 1 UNEVALUABLE UNEVALUABLE
659_dAn intergenic(SPRY2,SLITRK1) NTRK3 chr13 83432541 chr15 87987526 BND CALL_659_dAn_59 FP call 0.0001 0 0 12 0 hg19 13 84006676.0 15 88530757.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn OCA2 ENSG00000282278 chr15 27775103 chr4 54269535 BND CALL_659_dAn_60 FP call 0.0 0 0 15 10373 hg19 15 28020249.0 4 55135702.0 0 15 UNEVALUABLE UNEVALUABLE
659_dAn VPS13C ENSG00000282278 chr15 62012222 chr4 54269535 BND CALL_659_dAn_61 FP call 0.0 0 0 199 10373 hg19 15 62304421.0 4 55135702.0 0 199 EVALUABLE BAM_REFUTED
659_dAn intergenic(HCN4,REC114) PAX7 chr15 73374138 chr1 18631464 BND CALL_659_dAn_62 FP call 0.0 0 0 14 415 hg19 15 73666479.0 1 18957958.0 0 14 UNEVALUABLE UNEVALUABLE
659_dAn NTRK3 CHD4 chr15 87987526 chr12 6607673 BND CALL_659_dAn_63 FP call 0.0001 0 0 0 10 hg19 15 88530757.0 12 6716839.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn NTRK3 intergenic(RORA,VPS13C) chr15 87987526 chr15 61571753 BND CALL_659_dAn_64 FP call 0.0003 0 0 0 3 hg19 15 88530757.0 15 61863952.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn NTRK3 IQCJ chr15 87987526 chr3 159144643 BND CALL_659_dAn_65 FP call 0.0 0 0 0 1 hg19 15 88530757.0 3 158862432.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn NTRK3 SUSD5 chr15 87987526 chr3 33172181 BND CALL_659_dAn_66 FP call 0.0 0 0 0 2 hg19 15 88530757.0 3 33213673.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn NTRK3 MAGI1 chr15 87987526 chr3 65448692 BND CALL_659_dAn_67 FP call 0.0 0 0 0 28 hg19 15 88530757.0 3 65434367.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn NTRK3 DPP6 chr15 87987526 chr7 154510925 BND CALL_659_dAn_68 FP call 0.0001 0 0 0 21 hg19 15 88530757.0 7 154208010.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn NTRK3 intergenic(PCDH9,KLHL1) chr15 87987526 chr13 67756326 BND CALL_659_dAn_69 FP call 0.0 0 0 0 3 hg19 15 88530757.0 13 68330458.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn NTRK3 intergenic(SPDYE21,AUTS2) chr15 87987526 chr7 69586561 BND CALL_659_dAn_70 FP call 0.0 0 0 0 6 hg19 15 88530757.0 7 69051547.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn NTRK3 intergenic(MAGEE2,PBDC1) chr15 87987526 chrX 75938448 BND CALL_659_dAn_71 FP call 0.0 0 0 0 1 hg19 15 88530757.0 X 75158283.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn AEN EIF3A chr15 88627572 chr10 119073486 BND CALL_659_dAn_72 FP call 0.0011 0 0 4 1364 hg19 15 89170803.0 10 120832998.0 0 4 UNEVALUABLE UNEVALUABLE
659_dAn IDH2 intergenic(PGRMC2,JADE1) chr15 90083071 chr4 128707004 BND CALL_659_dAn_73 FP call 0.0 0 0 15 50 hg19 15 90626303.0 4 129628159.0 0 15 UNEVALUABLE UNEVALUABLE
659_dAn IDH2 intergenic(PPP1R3C,TNKS2) chr15 90083073 chr10 91772928 BND CALL_659_dAn_74 FP call 0.0 0 0 15 0 hg19 15 90626305.0 10 93532685.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn IDH2 intergenic(MEF2C,CETN3) chr15 90083081 chr5 89174802 BND CALL_659_dAn_75 FP call 0.0001 0 0 15 2 hg19 15 90626313.0 5 88470619.0 0 2 UNEVALUABLE UNEVALUABLE
659_dAn intergenic(ASGR2,ASGR1) NEGR1 chr17 7118487 chr1 71404572 BND CALL_659_dAn_76 FP call 0.0 0 0 1 0 hg19 17 7021806.0 1 71870255.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn CDK12 BRCA1 chr17 39533179 chr17 43078080 DUP CALL_659_dAn_77 FP call 0.7889 0 0 1 1932 hg19 17 37689432.0 17 41230097.0 0 1 UNEVALUABLE UNEVALUABLE
659_dAn intergenic(APPBP2,PPM1D) BRIP1 chr17 60551169 chr17 61845505 DUP CALL_659_dAn_78 FP call 0.0167 0 0 128 9 hg19 17 58628530.0 17 59922866.0 0 9 UNEVALUABLE UNEVALUABLE
659_dAn PITPNC1 DCTN4 chr17 67518662 chr5 150756429 BND CALL_659_dAn_79 FP call 0.0001 0 0 1 348 hg19 17 65514778.0 5 150135991.0 0 1 UNEVALUABLE UNEVALUABLE
659_dAn ZNF397 ZSCAN30 chr18 35246282 chr18 35272372 BND CALL_659_dAn_80 FP call 0.0007 0 0 3713 5 hg19 18 32826246.0 18 32852336.0 0 5 UNEVALUABLE UNEVALUABLE
659_dAn SLC14A2 SLC2A2 chr18 45528529 chr3 171009964 BND CALL_659_dAn_81 FP call 0.0 0 0 0 606 hg19 18 43108494.0 3 170727753.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn intergenic(FECH,NARS1) WDR7 chr18 57589066 chr18 56695117 BND CALL_659_dAn_82 TP_DUP call 0.9872 0 0 3 2209 hg19 18 55256298.0 18 54362348.0 0 3 UNEVALUABLE UNEVALUABLE
659_dAn BCL2 RFX4 chr18 63128464 chr12 106687183 BND CALL_659_dAn_83 FP call 0.0 0 0 9050 1003 hg19 18 60795697.0 12 107080961.0 0 1003 EVALUABLE BAM_REFUTED
659_dAn CYP4F12 intergenic(LIFR,OSMR) chr19 15684829 chr5 38804964 BND CALL_659_dAn_84 FP call 0.0 0 0 1849 2 hg19 19 15795639.0 5 38805066.0 0 2 UNEVALUABLE UNEVALUABLE
659_dAn ENSG00000141979 ENSG00000268790 chr19 16577320 chr19 16645821 DUP CALL_659_dAn_85 TP call 0.6774 0 0 3831 7 hg19 19 16688131.0 19 16756632.0 0 7 UNEVALUABLE UNEVALUABLE
659_dAn XRCC1 CSMD3 chr19 43543318 chr8 112372142 BND CALL_659_dAn_86 FP call 0.0 0 0 1020 26 hg19 19 44047470.0 8 113384371.0 0 26 EVALUABLE BAM_REFUTED
659_dAn PLCB1 ENSG00000285901 chr20 8498102 chr12 4304984 BND CALL_659_dAn_87 FP call 0.0 0 0 10 1 hg19 20 8478749.0 12 4414150.0 0 1 UNEVALUABLE UNEVALUABLE
659_dAn ASXL1 intergenic(NOL4L,C20orf203) chr20 32437220 chr20 32610030 DUP CALL_659_dAn_88 TP call 0.5353 0 0 7695 3 hg19 20 31025023.0 20 31197832.0 0 3 UNEVALUABLE UNEVALUABLE
659_dAn TOP1 intergenic(MAFB,TOP1) chr20 41113973 chr20 41019036 BND CALL_659_dAn_89 FP call 0.0 0 0 1685 5 hg19 20 39742613.0 20 39647676.0 0 5 UNEVALUABLE UNEVALUABLE
659_dAn TMPRSS2 NRCAM chr21 41487352 chr7 108412741 BND CALL_659_dAn_90 FP call 0.0 0 0 6 0 hg19 21 42859279.0 7 108053185.0 0 0 UNEVALUABLE UNEVALUABLE
659_dAn RSPH1 SLC2A2 chr21 42484034 chr3 171010017 BND CALL_659_dAn_91 FP call 0.0001 0 0 3 606 hg19 21 43904144.0 3 170727806.0 0 3 UNEVALUABLE UNEVALUABLE
659_dAn intergenic(CCDC188,RTN4R) LZTR1 chr22 20184658 chr22 20997434 DUP CALL_659_dAn_92 FP call 0.0 0 0 2 2094 hg19 22 20172181.0 22 21351723.0 0 2 UNEVALUABLE UNEVALUABLE
659_dAn intergenic(LARGE1,ISX) PTRH1 chr22 34715946 chr9 127723266 BND CALL_659_dAn_93 TP_DUP call 0.5301 0 0 2 1111 hg19 22 35111937.0 9 130485545.0 0 2 UNEVALUABLE UNEVALUABLE
659_dAn intergenic(COL16A1,ADGRB2) ACOX1 chr1 31710928 chr17 75953535 TRANSLOCATION TRUTH_659_dAn_94 TRUTH truth 76.0 0 0 6 891 hg19 1 32176529.0 17 73949616.0 0 6 UNEVALUABLE UNEVALUABLE
659_dAn DNAH11 STK31 chr7 21784803 chr7 23785491 DUPLICATION TRUTH_659_dAn_95 TRUTH truth 22.0 0 0 419 1008 hg19 7 21824421.0 7 23825110.0 0 419 EVALUABLE BAM_REFUTED
659_dAn intergenic(SNX18,ESM1) ESM1 chr5 54975293 chr5 54979371 DUPLICATION TRUTH_659_dAn_96 TRUTH truth 50.0 0 0 3 369 hg19 5 54271121.0 5 54275199.0 0 3 UNEVALUABLE UNEVALUABLE
659_dAn ETV6 intergenic(ETV6,BCL2L14) chr12 11856340 chr12 11916366 DUPLICATION TRUTH_659_dAn_97 TRUTH truth 114.0 0 0 10823 20 hg19 12 12009274.0 12 12069300.0 0 20 EVALUABLE BAM_REFUTED
659_dAn PTRH1 intergenic(LARGE1,ISX) chr9 127723265 chr22 34715945 TRANSLOCATION TRUTH_659_dAn_98 TRUTH truth 216.0 0 0 1111 2 hg19 9 130485544.0 22 35111936.0 0 2 UNEVALUABLE UNEVALUABLE
659_dAn WDR7 intergenic(FECH,NARS1) chr18 56695114 chr18 57589065 INVERSION TRUTH_659_dAn_99 TRUTH truth 50.0 0 0 2212 3 hg19 18 54362345.0 18 55256297.0 0 3 UNEVALUABLE UNEVALUABLE
659_dAn MED26 SMIM7 chr19 16577296 chr19 16645833 DUPLICATION TRUTH_659_dAn_100 TRUTH truth 106.0 0 0 3925 7 hg19 19 16688107.0 19 16756644.0 0 7 UNEVALUABLE UNEVALUABLE
659_dAn intergenic(PLPP1,SLC38A9) DEPDC1B chr5 55605475 chr5 60597829 INVERSION TRUTH_659_dAn_101 TRUTH truth 96.0 0 0 35 804 hg19 5 54901303.0 5 59893656.0 0 35 EVALUABLE BAM_REFUTED
659_dAn intergenic(ARL6IP6,RPRM) TBK1 chr2 152821176 chr12 64460270 TRANSLOCATION TRUTH_659_dAn_102 TRUTH truth 36.0 0 0 9 462 hg19 2 153677690.0 12 64854050.0 0 9 UNEVALUABLE UNEVALUABLE
659_dAn FAT3 intergenic(SLCO1C1,SLCO1B3) chr11 92890595 chr12 20799482 TRANSLOCATION TRUTH_659_dAn_103 TRUTH truth 65.0 0 0 3051 2 hg19 11 92623761.0 12 20952416.0 0 2 UNEVALUABLE UNEVALUABLE
659_dAn TAFA2 BPTF chr12 61907291 chr17 67924553 TRANSLOCATION TRUTH_659_dAn_104 TRUTH truth 66.0 0 0 1 539 hg19 12 62301072.0 17 65920669.0 0 1 UNEVALUABLE UNEVALUABLE
659_dAn ASXL1 intergenic(NOL4L,C20orf203) chr20 32437219 chr20 32610029 DUPLICATION TRUTH_659_dAn_105 TRUTH truth 121.0 0 0 7708 3 hg19 20 31025022.0 20 31197831.0 0 3 UNEVALUABLE UNEVALUABLE
659_dKV ALK TPM3 chr2 29224495 chr1 154165967 BND CALL_659_dKV_0 TP_DUP call 0.1552 0 0 10221 157 hg19 2.0 29447361.0 1.0 154138443.0 0 157 EVALUABLE BAM_REFUTED
659_dKV HLA-F HLA-A chr6 29725605 chr6 29944646 DEL CALL_659_dKV_1 FP call 0.0 1 0 2598 6684 hg19 6.0 29693382.0 6.0 29912423.0 1 2598 EVALUABLE BAM_AMBIGUOUS
659_dKV HLA-A intergenic(MICA,MICB) chr6 29942491 chr6 31463030 DEL CALL_659_dKV_2 FP call 0.0005 0 0 8718 49 hg19 6.0 29910268.0 6.0 31430807.0 0 49 EVALUABLE BAM_REFUTED
659_dKV HLA-A HLA-E chr6 29944830 chr6 30491852 DUP CALL_659_dKV_3 FP call 0.0004 0 0 7538 1648 hg19 6.0 29912607.0 6.0 30459629.0 0 1648 EVALUABLE BAM_REFUTED
659_dKV intergenic(PRSS1,PRSS2) PRSS2 chr7 142760244 chr7 142770994 DUP CALL_659_dKV_4 FP call 0.0021 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_dKV intergenic(SEC23IP,PLPP4) HLA-DQA2 chr10 119973393 chr6 32746266 BND CALL_659_dKV_5 FP call 0.0 0 0 0 3540 hg19 10.0 121732905.0 6.0 32714043.0 0 0 UNEVALUABLE UNEVALUABLE
659_dKV intergenic(.,.) MUC19 chrUn_JTFH01000061v1_decoy 3943 chr12 40513749 BND CALL_659_dKV_6 FP call 0.0011 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_dKV TPM3 ALK chr1 154165966 chr2 29224494 TRANSLOCATION TRUTH_659_dKV_7 TRUTH truth 87.0 0 0 153 10216 hg19 1.0 154138442.0 2.0 29447360.0 0 153 EVALUABLE BAM_REFUTED
659_dXQ RAF1 GOLGA4 chr3 12600505 chr3 37294008 BND CALL_659_dXQ_0 TP call 0.8808 0 0 9628 1 hg19 3 12642004.0 3 37335499.0 0 1 UNEVALUABLE UNEVALUABLE
659_dXQ BCL2L1 PLAGL2 chr20 31722778 chr20 32198761 DEL CALL_659_dXQ_1 FP call 0.4704 0 0 402 0 hg19 20 30310581.0 20 30786564.0 0 0 UNEVALUABLE UNEVALUABLE
659_dXQ RAF1 GOLGA4 chr3 12600504 chr3 37294007 INVERSION TRUTH_659_dXQ_2 TRUTH truth 202.0 0 0 9627 1 hg19 3 12642003.0 3 37335498.0 0 1 UNEVALUABLE UNEVALUABLE
659_dcz intergenic(AMY1C,PRMT6) FBXO11 chr1 104946748 chr2 47806818 BND CALL_659_dcz_0 FP call 0.0 0 0 6 3343 hg19 1 105489370.0 2 48033957.0 0 6 UNEVALUABLE UNEVALUABLE
659_dcz PBX1 intergenic(SCP2D1,SLC24A3) chr1 164563270 chr20 18974036 BND CALL_659_dcz_1 FP call 0.0001 0 0 242 6 hg19 1 164532507.0 20 18954680.0 0 6 UNEVALUABLE UNEVALUABLE
659_dcz PPP1R12B ZNF66 chr1 202434715 chr19 20783395 BND CALL_659_dcz_2 FP call 0.0 0 0 373 0 hg19 1 202403843.0 19 20966201.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz NUCKS1 PPP2R5A chr1 205739923 chr1 212358751 DUP CALL_659_dcz_3 FP call 0.0002 0 0 0 328 hg19 1 205709051.0 1 212532093.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz SLC35F3 IGFBPL1 chr1 234066984 chr9 38414120 BND CALL_659_dcz_4 FP call 0.0 0 0 4 332 hg19 1 234202730.0 9 38414117.0 0 4 UNEVALUABLE UNEVALUABLE
659_dcz SMYD3 IGF1R chr1 245771068 chr15 98959984 BND CALL_659_dcz_5 FP call 0.0001 0 0 2 0 hg19 1 245934370.0 15 99503213.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz CNTNAP5 SETD2 chr2 124709217 chr3 47101633 BND CALL_659_dcz_6 FP call 0.0 0 0 1 535 hg19 2 125466794.0 3 47143123.0 0 1 UNEVALUABLE UNEVALUABLE
659_dcz CACNB4 ETV1 chr2 152018807 chr7 13978416 BND CALL_659_dcz_7 FP call 0.0 0 0 0 0 hg19 2 152875321.0 7 14018041.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz intergenic(ERMN,CYTIP) UBE2A chr2 157365631 chrX 119583113 BND CALL_659_dcz_8 FP call 0.0 0 0 0 623 hg19 2 158222143.0 X 118717076.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz PID1 IL1RN chr2 229175672 chr2 113132657 BND CALL_659_dcz_9 FP call 0.0 0 0 0 733 hg19 2 230040388.0 2 113890234.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz ARMC9 SETD2 chr2 231372700 chr3 47101633 BND CALL_659_dcz_10 FP call 0.0 0 0 7 535 hg19 2 232237411.0 3 47143123.0 0 7 UNEVALUABLE UNEVALUABLE
659_dcz AGAP1 PAPSS1 chr2 235740993 chr4 107649735 BND CALL_659_dcz_11 FP call 0.0002 0 0 607 3 hg19 2 236649637.0 4 108570891.0 0 3 UNEVALUABLE UNEVALUABLE
659_dcz SRGAP3 SETD2 chr3 9286162 chr3 47101634 BND CALL_659_dcz_12 FP call 0.0 0 0 29 535 hg19 3 9327846.0 3 47143124.0 0 29 EVALUABLE BAM_REFUTED
659_dcz PPARG intergenic(JDP2,BATF) chr3 12298403 chr14 75491154 BND CALL_659_dcz_13 FP call 0.0001 0 0 6 0 hg19 3 12339902.0 14 75957497.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz PPARG intergenic(KLF4,ACTL7B) chr3 12298403 chr9 108280471 BND CALL_659_dcz_14 FP call 0.0 0 0 6 3 hg19 3 12339902.0 9 111042751.0 0 3 UNEVALUABLE UNEVALUABLE
659_dcz PPARG intergenic(IL2,IL21) chr3 12317889 chr4 122565395 BND CALL_659_dcz_15 FP call 0.0 0 0 0 1 hg19 3 12359388.0 4 123486550.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz PPARG intergenic(NOX3,ARID1B) chr3 12366543 chr6 156033622 BND CALL_659_dcz_16 FP call 0.0 0 0 0 0 hg19 3 12408042.0 6 156354756.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz intergenic(PROK2,RYBP) ETV1 chr3 71985863 chr7 13978418 BND CALL_659_dcz_17 FP call 0.0 0 0 8 0 hg19 3 72035014.0 7 14018043.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz ETV5 NVL chr3 186066131 chr1 224236853 BND CALL_659_dcz_18 FP call 0.0 0 0 5309 339 hg19 3 185783920.0 1 224424555.0 0 339 EVALUABLE BAM_REFUTED
659_dcz intergenic(UBXN7,RNF168) ARID1B chr3 196441654 chr6 157208894 BND CALL_659_dcz_19 FP call 0.0 0 0 11 0 hg19 3 196168525.0 6 157530028.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz intergenic(DEFB131A,SLC2A9) WDR1 chr4 9756644 chr4 10077804 BND CALL_659_dcz_20 FP call 0.0 0 0 0 2260 hg19 4 9758268.0 4 10079428.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz ENSG00000282278 HDAC9 chr4 54269535 chr7 18422745 BND CALL_659_dcz_21 FP call 0.0 0 0 8899 6 hg19 4 55135702.0 7 18462368.0 0 6 UNEVALUABLE UNEVALUABLE
659_dcz ADAD1 intergenic(ADAD1,IL2) chr4 122429705 chr4 122429829 BND CALL_659_dcz_22 FP call 0.0 170 0 340 340 hg19 4 123350860.0 4 123350984.0 170 340 EVALUABLE BAM_CONFIRMED
659_dcz intergenic(AGA,TENM3) IGF1 chr4 179322284 chr12 102398343 BND CALL_659_dcz_23 FP call 0.0 0 0 0 0 hg19 4 180243438.0 12 102792121.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz intergenic(CDKN2AIPNL,JADE2) ETV6 chr5 134513056 chr12 11895310 BND CALL_659_dcz_24 FP call 0.0 0 0 7 0 hg19 5 133848747.0 12 12048244.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz intergenic(TRPC7,SPOCK1) SETD2 chr5 136466498 chr3 47101634 BND CALL_659_dcz_25 FP call 0.0 0 0 15 535 hg19 5 135802187.0 3 47143124.0 0 15 UNEVALUABLE UNEVALUABLE
659_dcz JARID2 ENSG00000282278 chr6 15300723 chr4 54269535 BND CALL_659_dcz_26 FP call 0.0 0 0 4 8899 hg19 6 15300954.0 4 55135702.0 0 4 UNEVALUABLE UNEVALUABLE
659_dcz intergenic(RFPL4B,MARCKS) SETD2 chr6 113664029 chr3 47101634 BND CALL_659_dcz_27 FP call 0.0001 0 0 3 535 hg19 6 113985231.0 3 47143124.0 0 3 UNEVALUABLE UNEVALUABLE
659_dcz CRPPA PAK5 chr7 16435410 chr20 9711390 BND CALL_659_dcz_28 FP call 0.0 0 0 0 0 hg19 7 16475035.0 20 9692038.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz PALS2 CMC1 chr7 24635817 chr3 28294466 BND CALL_659_dcz_29 FP call 0.0 0 0 10 211 hg19 7 24675436.0 3 28335957.0 0 10 UNEVALUABLE UNEVALUABLE
659_dcz intergenic(BMPER,NPSR1) ETV6 chr7 34157994 chr12 11799740 BND CALL_659_dcz_30 FP call 0.0 0 0 2 0 hg19 7 34197606.0 12 11952674.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz TNKS MSRA chr8 9726716 chr8 10303724 DEL CALL_659_dcz_31 TP call 0.0007 0 0 347 0 hg19 8 9584226.0 8 10161234.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz NRG1 TTLL6 chr8 32732739 chr17 48810974 BND CALL_659_dcz_32 FP call 0.0 0 0 9 0 hg19 8 32590257.0 17 46888336.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz intergenic(HAS2,ZHX2) FBXW7 chr8 122610790 chr4 152535420 BND CALL_659_dcz_33 FP call 0.0 0 0 0 1 hg19 8 123623029.0 4 153456572.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz ZHX2 ENSG00000282278 chr8 122887093 chr4 54269535 BND CALL_659_dcz_34 FP call 0.0 0 0 11 8899 hg19 8 123899332.0 4 55135702.0 0 11 UNEVALUABLE UNEVALUABLE
659_dcz intergenic(C9orf64,HNRNPK) HNRNPK chr9 83968080 chr9 83968200 BND CALL_659_dcz_35 FP call 0.0 0 0 0 0 hg19 9 86582995.0 9 86583115.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz FRMD4A NF2 chr10 13663097 chr22 29666127 BND CALL_659_dcz_36 FP call 0.0 0 0 106 9 hg19 10 13705097.0 22 30062116.0 0 9 UNEVALUABLE UNEVALUABLE
659_dcz TCERG1L ATXN7 chr10 131139711 chr3 64002478 BND CALL_659_dcz_37 FP call 0.0 0 0 0 1 hg19 10 132937974.0 3 63988154.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz intergenic(TENM4,FAM181B) SETD2 chr11 80724400 chr3 47101633 BND CALL_659_dcz_38 FP call 0.0001 0 0 5 535 hg19 11 80435443.0 3 47143123.0 0 5 UNEVALUABLE UNEVALUABLE
659_dcz RYR3 SPRED1 chr15 33516188 chr15 38264269 BND CALL_659_dcz_39 FP call 0.0029 0 0 19 0 hg19 15 33808389.0 15 38556470.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz IDH2 intergenic(PARD3,CUL2) chr15 90083082 chr10 34832585 BND CALL_659_dcz_40 FP call 0.0001 0 0 5 0 hg19 15 90626314.0 10 35121513.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz intergenic(ZNF629,BCL7C) FGFR2 chr16 30801287 chr10 121590480 BND CALL_659_dcz_41 FP call 0.0 0 0 2 1 hg19 16 30812608.0 10 123349994.0 0 1 UNEVALUABLE UNEVALUABLE
659_dcz intergenic(IRX3,IRX5) TP63 chr16 54552652 chr3 189705282 BND CALL_659_dcz_42 FP call 0.0 0 0 1 0 hg19 16 54586564.0 3 189423071.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz intergenic(GOT2,CDH8) IGF1R chr16 59273349 chr15 98959991 BND CALL_659_dcz_43 FP call 0.0 0 0 0 0 hg19 16 59307253.0 15 99503220.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz intergenic(EEF2,PIAS4) FAM161B chr19 3986839 chr14 73950213 BND CALL_659_dcz_44 FP call 0.0002 0 0 0 3609 hg19 19 3986837.0 14 74416916.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz intergenic(ZNF254,UQCRFS1) NPM1 chr19 28287633 chr5 171392865 BND CALL_659_dcz_45 FP call 0.0 0 0 0 5097 hg19 19 28778540.0 5 170819869.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz RHPN2 TCF7L2 chr19 33043158 chr10 112950398 BND CALL_659_dcz_46 FP call 0.0 0 0 2 1967 hg19 19 33534064.0 10 114710157.0 0 2 UNEVALUABLE UNEVALUABLE
659_dcz SYNE4 intergenic(TMTC3,KITLG) chr19 36006517 chr12 88261374 BND CALL_659_dcz_47 FP call 0.0 0 0 3432 0 hg19 19 36497419.0 12 88655151.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz intergenic(FOXA2,SSTR4) PPARG chr20 22937259 chr3 12298404 BND CALL_659_dcz_48 FP call 0.0 0 0 0 6 hg19 20 22917896.0 3 12339903.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz PTPRT AR chr20 42345586 chrX 67695847 BND CALL_659_dcz_49 FP call 0.0 0 0 6 3898 hg19 20 40974226.0 X 66915689.0 0 6 UNEVALUABLE UNEVALUABLE
659_dcz NCOA3 ETV6 chr20 47531928 chr12 11827176 BND CALL_659_dcz_50 FP call 0.0 0 0 12 3 hg19 20 46160672.0 12 11980110.0 0 3 UNEVALUABLE UNEVALUABLE
659_dcz SALL4 ENSG00000282278 chr20 51788358 chr4 54269535 BND CALL_659_dcz_51 FP call 0.0 0 0 441 8899 hg19 20 50404897.0 4 55135702.0 0 441 EVALUABLE BAM_REFUTED
659_dcz intergenic(MID1IP1,BCOR) ENSG00000282278 chrX 39680970 chr4 54269535 BND CALL_659_dcz_52 FP call 0.0 0 0 2 8899 hg19 X 39540224.0 4 55135702.0 0 2 UNEVALUABLE UNEVALUABLE
659_dcz MAOA ETV1 chrX 43657121 chr7 13978418 BND CALL_659_dcz_53 FP call 0.0 0 0 2 0 hg19 X 43516369.0 7 14018043.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz FPGT-TNNI3K intergenic(ENSG00000249209,MRPS6) chr1 74436126 chr21 34011004 TRANSLOCATION TRUTH_659_dcz_54 TRUTH truth 12.0 0 0 1153 9 hg19 1 74901810.0 21 35383305.0 0 9 UNEVALUABLE UNEVALUABLE
659_dcz RIF1 intergenic(LRIG1,KBTBD8) chr2 151446572 chr3 66987507 TRANSLOCATION TRUTH_659_dcz_55 TRUTH truth 7.0 0 0 522 0 hg19 2 152303086.0 3 67037931.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz intergenic(TRIML1,FRG1) ETV1 chr4 188340215 chr7 13952756 TRANSLOCATION TRUTH_659_dcz_56 TRUTH truth 23.0 0 0 12 8309 hg19 4 189261369.0 7 13992381.0 0 12 UNEVALUABLE UNEVALUABLE
659_dcz NUP43 intergenic(KTN1,PELI2) chr6 149726977 chr14 55927611 TRANSLOCATION TRUTH_659_dcz_57 TRUTH truth 6.0 0 0 977 0 hg19 6 150048113.0 14 56394329.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz GCK FNDC3A chr7 44145621 chr13 49208632 TRANSLOCATION TRUTH_659_dcz_58 TRUTH truth 22.0 0 0 2155 0 hg19 7 44185220.0 13 49782768.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz TNKS MSRA chr8 9726715 chr8 10303723 DELETION TRUTH_659_dcz_59 TRUTH truth 11.0 0 0 347 0 hg19 8 9584225.0 8 10161233.0 0 0 UNEVALUABLE UNEVALUABLE
659_dcz SLC28A3 DNAJC25-GNG10 chr9 84292730 chr9 111634938 INVERSION TRUTH_659_dcz_60 TRUTH truth 7.0 0 0 347 0 hg19 9 86907645.0 9 114397218.0 0 0 UNEVALUABLE UNEVALUABLE
659_dyR UBE4B KIF1B chr1 10130715 chr1 10323323 DUP CALL_659_dyR_0 FP call 0.9941 0 0 1088 83 hg19 1.0 10190773.0 1 10383381.0 0 83 EVALUABLE BAM_REFUTED
659_dyR EEF1AKMT4-ECE2 TAF7 chr3 184252213 chr5 141319311 BND CALL_659_dyR_1 FP call 0.002 0 0 2 4170 hg19 3.0 183970001.0 5 140698878.0 0 2 UNEVALUABLE UNEVALUABLE
659_dyR FOXC1 PHACTR1 chr6 1610756 chr6 12917981 DEL CALL_659_dyR_2 TP call 0.0475 0 0 2587 3 hg19 6.0 1610991.0 6 12918213.0 0 3 UNEVALUABLE UNEVALUABLE
659_dyR intergenic(SLC35B3,TFAP2A) ETV6 chr6 9980425 chr12 11885447 BND CALL_659_dyR_3 TP call 0.0562 0 0 1 14077 hg19 6.0 9980658.0 12 12038381.0 0 1 UNEVALUABLE UNEVALUABLE
659_dyR intergenic(SLC35B3,TFAP2A) FOXC1 chr6 10217162 chr6 1610953 BND CALL_659_dyR_4 TP_DUP call 0.0502 0 0 2 2829 hg19 6.0 10217395.0 6 1611188.0 0 2 UNEVALUABLE UNEVALUABLE
659_dyR PHACTR1 ETV6 chr6 12918632 chr12 11883748 BND CALL_659_dyR_5 FP call 0.0765 0 0 2 8990 hg19 6.0 12918864.0 12 12036682.0 0 2 UNEVALUABLE UNEVALUABLE
659_dyR HLA-A intergenic(MICA,MICB) chr6 29943910 chr6 31462529 BND CALL_659_dyR_6 FP call 0.0 0 0 4405 14 hg19 6.0 29911687.0 6 31430306.0 0 14 UNEVALUABLE UNEVALUABLE
659_dyR HLA-C HLA-B chr6 31270567 chr6 31355751 DUP CALL_659_dyR_7 FP call 0.0 41 0 2822 7028 hg19 6.0 31238344.0 6 31323528.0 41 2822 EVALUABLE BAM_CONFIRMED
659_dyR MUC3A intergenic(.,.) chr7 100958807 chrUn_JTFH01000319v1_decoy 1858 BND CALL_659_dyR_8 FP call 0.0003 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_dyR ASAP1 JUN chr8 130292874 chr1 58782795 BND CALL_659_dyR_9 FP call 0.0002 0 0 0 11929 hg19 8.0 131305120.0 1 59248467.0 0 0 UNEVALUABLE UNEVALUABLE
659_dyR intergenic(SYT7,DAGLA) JUN chr11 61589671 chr1 58782924 BND CALL_659_dyR_10 FP call 0.0 0 0 0 10106 hg19 11.0 61357143.0 1 59248596.0 0 0 UNEVALUABLE UNEVALUABLE
659_dyR CDCA5 ZFPL1 chr11 65083660 chr11 65086371 BND CALL_659_dyR_11 TP call 0.9906 0 0 1939 2457 hg19 11.0 64851132.0 11 64853843.0 0 1939 EVALUABLE BAM_REFUTED
659_dyR CORO1B SHANK2 chr11 67440354 chr11 70575201 DUP CALL_659_dyR_12 TP call 0.124 0 0 1890 3 hg19 11.0 67207825.0 11 70421306.0 0 3 UNEVALUABLE UNEVALUABLE
659_dyR intergenic(TENM4,FAM181B) CORO1B chr11 80524065 chr11 67440136 BND CALL_659_dyR_13 FP call 0.8883 0 0 0 2127 hg19 11.0 80235109.0 11 67207607.0 0 0 UNEVALUABLE UNEVALUABLE
659_dyR CDKN1B NELL2 chr12 12722000 chr12 44878959 DUP CALL_659_dyR_14 FP call 0.228 0 0 1 3 hg19 12.0 12874934.0 12 45272742.0 0 1 UNEVALUABLE UNEVALUABLE
659_dyR intergenic(GPRC5A,GPRC5D) FOXC1 chr12 12923773 chr6 1610659 BND CALL_659_dyR_15 FP call 0.3016 0 0 12 2447 hg19 12.0 13076707.0 6 1610894.0 0 12 UNEVALUABLE UNEVALUABLE
659_dyR ETNK1 TMEM117 chr12 22625547 chr12 44174167 DEL CALL_659_dyR_16 TP call 0.9673 0 0 2404 0 hg19 12.0 22778481.0 12 44567970.0 0 0 UNEVALUABLE UNEVALUABLE
659_dyR DNAI7 ETV6 chr12 25152957 chr12 11873604 BND CALL_659_dyR_17 TP_DUP call 0.2303 0 0 0 9870 hg19 12.0 25305891.0 12 12026538.0 0 0 UNEVALUABLE UNEVALUABLE
659_dyR intergenic(PDZRN4,GXYLT1) ETV6 chr12 42075404 chr12 11890909 BND CALL_659_dyR_18 FP call 0.0001 0 0 0 1270 hg19 12.0 42469206.0 12 12043843.0 0 0 UNEVALUABLE UNEVALUABLE
659_dyR KRBOX5 AR chr16 31784916 chrX 67692356 BND CALL_659_dyR_19 FP call 0.082 0 0 0 4 hg19 16.0 31796237.0 X 66912198.0 0 0 UNEVALUABLE UNEVALUABLE
659_dyR FOXC1 PHACTR1 chr6 1610755 chr6 12917980 DELETION TRUTH_659_dyR_20 TRUTH truth 35.0 0 0 2587 3 hg19 6.0 1610990.0 6 12918212.0 0 3 UNEVALUABLE UNEVALUABLE
659_dyR FOXC1 intergenic(SLC35B3,TFAP2A) chr6 1610951 chr6 10217162 INVERSION TRUTH_659_dyR_21 TRUTH truth 47.0 0 0 2828 2 hg19 6.0 1611186.0 6 10217395.0 0 2 UNEVALUABLE UNEVALUABLE
659_dyR intergenic(SLC35B3,TFAP2A) ETV6 chr6 9980424 chr12 11885446 TRANSLOCATION TRUTH_659_dyR_22 TRUTH truth 126.0 0 0 1 14073 hg19 6.0 9980657.0 12 12038380.0 0 1 UNEVALUABLE UNEVALUABLE
659_dyR CDCA5 TMEM262 chr11 65083658 chr11 65086369 INVERSION TRUTH_659_dyR_23 TRUTH truth 723.0 0 0 1939 2449 hg19 11.0 64851130.0 11 64853841.0 0 1939 EVALUABLE BAM_REFUTED
659_dyR CORO1B SHANK2 chr11 67440353 chr11 70575200 DUPLICATION TRUTH_659_dyR_24 TRUTH truth 22.0 0 0 1893 3 hg19 11.0 67207824.0 11 70421305.0 0 3 UNEVALUABLE UNEVALUABLE
659_dyR ETV6 DNAI7 chr12 11873598 chr12 25152959 INVERSION TRUTH_659_dyR_25 TRUTH truth 416.0 0 0 9892 0 hg19 12.0 12026532.0 12 25305893.0 0 0 UNEVALUABLE UNEVALUABLE
659_dyR ETNK1 TMEM117 chr12 22625546 chr12 44174166 DELETION TRUTH_659_dyR_26 TRUTH truth 60.0 0 0 2406 0 hg19 12.0 22778480.0 12 44567969.0 0 0 UNEVALUABLE UNEVALUABLE
659_dyR WDR89 intergenic(CEP192,LDLRAD4) chr14 63599593 chr18 13152397 TRANSLOCATION TRUTH_659_dyR_27 TRUTH truth 26.0 0 0 3688 3 hg19 14.0 64066311.0 18 13152396.0 0 3 UNEVALUABLE UNEVALUABLE
659_dyR TBC1D2B ADAMTS7 chr15 77984623 chr15 78768159 INVERSION TRUTH_659_dyR_28 TRUTH truth 28.0 0 0 9 996 hg19 15.0 78276965.0 15 79060501.0 0 9 UNEVALUABLE UNEVALUABLE
659_dyZ ATG7 TPRA1 chr3 11313363 chr3 127590399 DEL CALL_659_dyZ_0 FP call 0.5104 0 0 363 2 hg19 3.0 11354837.0 3.0 127309242.0 0 2 UNEVALUABLE UNEVALUABLE
659_dyZ intergenic(HLA-G,HLA-A) HLA-C chr6 29897132 chr6 31270002 BND CALL_659_dyZ_1 FP call 0.0 0 0 0 8557 hg19 6.0 29864909.0 6.0 31237779.0 0 0 UNEVALUABLE UNEVALUABLE
659_dyZ HLA-C HLA-B chr6 31269696 chr6 31354713 DUP CALL_659_dyZ_2 FP call 0.0 0 0 10630 8895 hg19 6.0 31237473.0 6.0 31322490.0 0 8895 EVALUABLE BAM_REFUTED
659_dyZ HLA-C intergenic(HLA-F,HLA-G) chr6 31270325 chr6 29801321 BND CALL_659_dyZ_3 FP call 0.0 0 0 8723 8 hg19 6.0 31238102.0 6.0 29769098.0 0 8 UNEVALUABLE UNEVALUABLE
659_dyZ BRAF MBNL1 chr7 140798157 chr3 152282584 BND CALL_659_dyZ_4 TP_DUP call 0.1888 0 0 5107 1 hg19 7.0 140497957.0 3.0 152000373.0 0 1 UNEVALUABLE UNEVALUABLE
659_dyZ intergenic(PRSS1,PRSS2) PRSS2 chr7 142760321 chr7 142771005 DUP CALL_659_dyZ_5 FP call 0.0009 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_dyZ intergenic(.,.) MUC3A chrUn_JTFH01000029v1_decoy 5546 chr7 100949667 BND CALL_659_dyZ_6 FP call 0.1754 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_dyZ MBNL1 BRAF chr3 152282582 chr7 140798156 TRANSLOCATION TRUTH_659_dyZ_7 TRUTH truth 40.0 0 0 1 5109 hg19 3.0 152000371.0 7.0 140497956.0 0 1 UNEVALUABLE UNEVALUABLE
659_e6H CTNNA3 FGFR2 chr10 66231992 chr10 121481175 DEL CALL_659_e6H_0 TP call 0.003 0 0 0 11378 hg19 10 67991750.0 10 123240689.0 0 0 UNEVALUABLE UNEVALUABLE
659_e6H CTRB2 CFDP1 chr16 75204292 chr16 75298363 DEL CALL_659_e6H_1 TP call 0.8448 0 0 1696 0 hg19 16 75238190.0 16 75332261.0 0 0 UNEVALUABLE UNEVALUABLE
659_e6H DMPK MLLT3 chr19 45770264 chr9 20414402 BND CALL_659_e6H_2 FP call 0.0129 0 0 1552 2644 hg19 19 46273522.0 9 20414400.0 0 1552 EVALUABLE BAM_REFUTED
659_e6H CTNNA3 FGFR2 chr10 66232077 chr10 121481050 DELETION TRUTH_659_e6H_3 TRUTH truth 127.0 0 0 0 11402 hg19 10 67991835.0 10 123240564.0 0 0 UNEVALUABLE UNEVALUABLE
659_e6H CTRB2 CFDP1 chr16 75204291 chr16 75298362 DELETION TRUTH_659_e6H_4 TRUTH truth 57.0 0 0 1695 0 hg19 16 75238189.0 16 75332260.0 0 0 UNEVALUABLE UNEVALUABLE
659_eHw OR2L8 OR2L3 chr1 247949591 chr1 248061634 DEL CALL_659_eHw_0 FP call 0.001 1 0 3315 1569 hg19 1 248112893.0 1 248224936.0 1 1569 EVALUABLE BAM_AMBIGUOUS
659_eHw NCKIPSD PTPRG chr3 48681333 chr3 62176297 DEL CALL_659_eHw_1 TP call 0.0187 0 0 3061 0 hg19 3 48718766.0 3 62161971.0 0 0 UNEVALUABLE UNEVALUABLE
659_eHw ASPH MYC chr8 61712323 chr8 127737824 BND CALL_659_eHw_2 TP call 0.0041 0 0 0 14563 hg19 8 62624882.0 8 128750070.0 0 0 UNEVALUABLE UNEVALUABLE
659_eHw intergenic(MAP2K2,CREB3L3) MYC chr19 4143506 chr8 127737476 BND CALL_659_eHw_3 TP_DUP call 0.0412 0 0 7 13415 hg19 19 4143503.0 8 128749722.0 0 7 UNEVALUABLE UNEVALUABLE
659_eHw NCKIPSD PTPRG chr3 48681332 chr3 62176296 DELETION TRUTH_659_eHw_4 TRUTH truth 23.0 0 0 3060 0 hg19 3 48718765.0 3 62161970.0 0 0 UNEVALUABLE UNEVALUABLE
659_eHw ASPH MYC chr8 61712321 chr8 127737822 INVERSION TRUTH_659_eHw_5 TRUTH truth 53.0 0 0 0 14575 hg19 8 62624880.0 8 128750068.0 0 0 UNEVALUABLE UNEVALUABLE
659_eHw MYC intergenic(MAP2K2,CREB3L3) chr8 127737475 chr19 4143505 TRANSLOCATION TRUTH_659_eHw_6 TRUTH truth 79.0 0 0 13410 7 hg19 8 128749721.0 19 4143502.0 0 7 UNEVALUABLE UNEVALUABLE
659_ePR NTRK1 TPM3 chr1 156874209 chr1 154168480 BND CALL_659_ePR_0 TP_DUP call 0.9968 0 0 13959 187 hg19 1 156844001.0 1 154140956.0 0 187 EVALUABLE BAM_REFUTED
659_ePR PPP1R2 IFNGR1 chr3 195536390 chr6 137203674 BND CALL_659_ePR_1 FP call 0.0 0 0 2 415 hg19 3 195263190.0 6 137524811.0 0 2 UNEVALUABLE UNEVALUABLE
659_ePR ZNF354B ENSG00000285978 chr5 178866294 chr5 178727145 BND CALL_659_ePR_2 FP call 0.0001 3 0 1067 1077 hg19 5 178293295.0 5 178154146.0 3 1067 EVALUABLE BAM_CONFIRMED
659_ePR HLA-B intergenic(HLA-B,MICA) chr6 31354273 chr6 31382143 DUP CALL_659_ePR_3 FP call 0.0 0 0 7607 233 hg19 6 31322050.0 6 31349920.0 0 233 EVALUABLE BAM_REFUTED
659_ePR LYZL1 LYZL2 chr10 29289163 chr10 30629730 BND CALL_659_ePR_4 FP call 0.0019 5 0 634 874 hg19 10 29578092.0 10 30918659.0 5 634 EVALUABLE BAM_CONFIRMED
659_ePR TPM3 NTRK1 chr1 154168478 chr1 156874207 INVERSION TRUTH_659_ePR_5 TRUTH truth 390.0 0 0 200 13969 hg19 1 154140954.0 1 156843999.0 0 200 EVALUABLE BAM_REFUTED
659_eRe IQGAP3 intergenic(SDK2,RPL38) chr1 156563308 chr17 74127922 BND CALL_659_eRe_0 TP call 0.8025 0 0 1419 59 hg19 1 156533100.0 17 72124061.0 0 59 EVALUABLE BAM_REFUTED
659_eRe VRK2 IMMT chr2 57960981 chr2 86159588 DEL CALL_659_eRe_1 TP call 0.8631 0 0 1 360 hg19 2 58188116.0 2 86386711.0 0 1 UNEVALUABLE UNEVALUABLE
659_eRe SLC4A5 TLX2 chr2 74329143 chr2 74515047 DUP CALL_659_eRe_2 TP call 0.9892 0 0 17 3952 hg19 2 74556270.0 2 74742174.0 0 17 UNEVALUABLE UNEVALUABLE
659_eRe SNED1 HDLBP chr2 241052343 chr2 241235588 DUP CALL_659_eRe_3 TP call 0.989 0 0 1311 1104 hg19 2 241991760.0 2 242175003.0 0 1104 EVALUABLE BAM_REFUTED
659_eRe BRPF1 ENSG00000288550 chr3 9739310 chr3 9928297 DUP CALL_659_eRe_4 TP call 0.8548 0 0 3848 1609 hg19 3 9780994.0 3 9969981.0 0 1609 EVALUABLE BAM_REFUTED
659_eRe TBC1D1 WDR19 chr4 38049696 chr4 39208710 DEL CALL_659_eRe_5 TP call 0.1865 0 0 1111 17 hg19 4 38051317.0 4 39210330.0 0 17 UNEVALUABLE UNEVALUABLE
659_eRe TRDN intergenic(FANCL,BCL11A) chr6 123503726 chr2 58274034 BND CALL_659_eRe_6 FP call 0.0087 0 0 2168 0 hg19 6 123824871.0 2 58501169.0 0 0 UNEVALUABLE UNEVALUABLE
659_eRe intergenic(NPVF,NFE2L3) HNRNPA2B1 chr7 25827147 chr7 26197849 DUP CALL_659_eRe_7 FP call 0.9636 0 0 1 827 hg19 7 25866767.0 7 26237469.0 0 1 UNEVALUABLE UNEVALUABLE
659_eRe intergenic(ASPH,NKAIN3) MCM4 chr8 62217373 chr8 47966193 BND CALL_659_eRe_8 FP call 0.0134 0 0 0 926 hg19 8 63129932.0 8 48878753.0 0 0 UNEVALUABLE UNEVALUABLE
659_eRe RUNX1T1 intergenic(ZNF804B,STEAP1) chr8 91959535 chr7 89375625 BND CALL_659_eRe_9 FP call 0.0 0 0 56 3 hg19 8 92971763.0 7 89004939.0 0 3 UNEVALUABLE UNEVALUABLE
659_eRe FOXH1 PPP1R16A chr8 144475158 chr8 144496764 DEL CALL_659_eRe_10 FP call 0.9804 0 0 3003 733 hg19 8 145700541.0 8 145722147.0 0 733 EVALUABLE BAM_REFUTED
659_eRe NFKB2 PSD chr10 102401650 chr10 102416812 DUP CALL_659_eRe_11 FP call 0.0142 0 0 3434 2530 hg19 10 104161407.0 10 104176569.0 0 2530 EVALUABLE BAM_REFUTED
659_eRe CHRNA10 RHOG chr11 3667114 chr11 3827855 DEL CALL_659_eRe_12 FP call 0.0063 0 0 2193 2242 hg19 11 3688344.0 11 3849085.0 0 2193 EVALUABLE BAM_REFUTED
659_eRe intergenic(POU2AF3,POU2AF1) HOATZ chr11 111337072 chr11 111534420 BND CALL_659_eRe_13 TP call 0.8644 0 0 1 270 hg19 11 111207797.0 11 111405145.0 0 1 UNEVALUABLE UNEVALUABLE
659_eRe ETV6 BCL2L14 chr12 11794922 chr12 12083996 DUP CALL_659_eRe_14 FP call 0.9679 0 0 0 3 hg19 12 11947856.0 12 12236930.0 0 0 UNEVALUABLE UNEVALUABLE
659_eRe ETV6 GRIN2B chr12 11839202 chr12 13498045 DUP CALL_659_eRe_15 FP call 0.3013 0 0 2231 0 hg19 12 11992136.0 12 13650979.0 0 0 UNEVALUABLE UNEVALUABLE
659_eRe ETV6 LRP6 chr12 11878174 chr12 12244546 DUP CALL_659_eRe_16 TP call 0.7549 0 0 9602 1277 hg19 12 12031108.0 12 12397480.0 0 1277 EVALUABLE BAM_REFUTED
659_eRe FBRSL1 GOLGA3 chr12 132517522 chr12 132777046 DUP CALL_659_eRe_17 FP call 0.9844 0 0 0 1188 hg19 12 133094108.0 12 133353632.0 0 0 UNEVALUABLE UNEVALUABLE
659_eRe ZNF839 RUNX1 chr14 102329706 chr21 34789617 BND CALL_659_eRe_18 FP call 0.0 0 0 25 1 hg19 14 102796043.0 21 36161914.0 0 1 UNEVALUABLE UNEVALUABLE
659_eRe IL34 MTSS2 chr16 70620793 chr16 70664309 DUP CALL_659_eRe_19 TP call 0.7644 0 0 0 4296 hg19 16 70654696.0 16 70698212.0 0 0 UNEVALUABLE UNEVALUABLE
659_eRe BAHCC1 ANAPC11 chr17 81447564 chr17 81891952 DUP CALL_659_eRe_20 FP call 0.4943 0 0 1 428 hg19 17 79414590.0 17 79849828.0 0 1 UNEVALUABLE UNEVALUABLE
659_eRe ARHGEF18 ZNF557 chr19 7399520 chr19 7083589 BND CALL_659_eRe_21 TP_DUP call 0.9584 0 0 9 2794 hg19 19 7464406.0 19 7083600.0 0 9 UNEVALUABLE UNEVALUABLE
659_eRe intergenic(DEFB129,DEFB132) TRIB3 chr20 241063 chr20 396324 DUP CALL_659_eRe_22 TP call 0.998 0 0 1 3016 hg19 20 221704.0 20 376968.0 0 1 UNEVALUABLE UNEVALUABLE
659_eRe IFNAR1 MCM3AP chr21 33349199 chr21 46267818 DEL CALL_659_eRe_23 FP call 0.1578 0 0 824 48 hg19 21 34721505.0 21 47687732.0 0 48 EVALUABLE BAM_REFUTED
659_eRe intergenic(NUDT10,EZHIP) PAGE2 chrX 51403905 chrX 55091423 DEL CALL_659_eRe_24 FP call 0.0198 0 0 0 998 hg19 X 51146757.0 X 55117856.0 0 0 UNEVALUABLE UNEVALUABLE
659_eRe SYTL4 intergenic(FAM133A,DIAPH2) chrX 100676113 chrX 94775401 BND CALL_659_eRe_25 TP_DUP call 0.9941 0 0 819 0 hg19 X 99931110.0 X 94030400.0 0 0 UNEVALUABLE UNEVALUABLE
659_eRe intergenic(.,.) MUC6 chr11_KI270902v1_alt 86624 chr11 1018193 BND CALL_659_eRe_26 FP call 0.0018 2327 0 5158 5351 hg19 11 1018073.0 11 1018193.0 2327 5158 EVALUABLE BAM_CONFIRMED
659_eRe IQGAP3 intergenic(SDK2,RPL38) chr1 156563307 chr17 74127919 TRANSLOCATION TRUTH_659_eRe_27 TRUTH truth 47.0 0 0 1419 59 hg19 1 156533099.0 17 72124058.0 0 59 EVALUABLE BAM_REFUTED
659_eRe VRK2 IMMT chr2 57960980 chr2 86159587 DELETION TRUTH_659_eRe_28 TRUTH truth 25.0 0 0 1 360 hg19 2 58188115.0 2 86386710.0 0 1 UNEVALUABLE UNEVALUABLE
659_eRe SLC4A5 TLX2 chr2 74329142 chr2 74515046 DUPLICATION TRUTH_659_eRe_29 TRUTH truth 161.0 0 0 17 3951 hg19 2 74556269.0 2 74742173.0 0 17 UNEVALUABLE UNEVALUABLE
659_eRe DNAH6 TCF7L1 chr2 84653812 chr2 85230257 DUPLICATION TRUTH_659_eRe_30 TRUTH truth 30.0 0 0 1670 8 hg19 2 84880936.0 2 85457380.0 0 8 UNEVALUABLE UNEVALUABLE
659_eRe SNED1 HDLBP chr2 241052342 chr2 241235587 DUPLICATION TRUTH_659_eRe_31 TRUTH truth 109.0 0 0 1316 1105 hg19 2 241991759.0 2 242175002.0 0 1105 EVALUABLE BAM_REFUTED
659_eRe BRPF1 ENSG00000288550 chr3 9739309 chr3 9928296 DUPLICATION TRUTH_659_eRe_32 TRUTH truth 59.0 0 0 3841 1609 hg19 3 9780993.0 3 9969980.0 0 1609 EVALUABLE BAM_REFUTED
659_eRe TBC1D1 WDR19 chr4 38049695 chr4 39208709 DELETION TRUTH_659_eRe_33 TRUTH truth 186.0 0 0 1111 17 hg19 4 38051316.0 4 39210329.0 0 17 UNEVALUABLE UNEVALUABLE
659_eRe intergenic(POU2AF3,POU2AF1) HOATZ chr11 111337070 chr11 111534418 INVERSION TRUTH_659_eRe_34 TRUTH truth 26.0 0 0 1 270 hg19 11 111207795.0 11 111405143.0 0 1 UNEVALUABLE UNEVALUABLE
659_eRe ETV6 LRP6 chr12 11878173 chr12 12244545 DUPLICATION TRUTH_659_eRe_35 TRUTH truth 115.0 0 0 9603 1277 hg19 12 12031107.0 12 12397479.0 0 1277 EVALUABLE BAM_REFUTED
659_eRe IL34 MTSS2 chr16 70620792 chr16 70664308 DUPLICATION TRUTH_659_eRe_36 TRUTH truth 54.0 0 0 0 4302 hg19 16 70654695.0 16 70698211.0 0 0 UNEVALUABLE UNEVALUABLE
659_eRe ZNF557 ARHGEF18 chr19 7083587 chr19 7399520 INVERSION TRUTH_659_eRe_37 TRUTH truth 35.0 0 0 2802 9 hg19 19 7083598.0 19 7464406.0 0 9 UNEVALUABLE UNEVALUABLE
659_eRe intergenic(DEFB129,DEFB132) TRIB3 chr20 241062 chr20 396323 DUPLICATION TRUTH_659_eRe_38 TRUTH truth 144.0 0 0 1 3016 hg19 20 221703.0 20 376967.0 0 1 UNEVALUABLE UNEVALUABLE
659_eRe intergenic(FAM133A,DIAPH2) SYTL4 chrX 94775398 chrX 100676112 INVERSION TRUTH_659_eRe_39 TRUTH truth 282.0 0 0 0 819 hg19 X 94030397.0 X 99931109.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebV intergenic(CDK11A,NADK) MORN1 chr1 1732467 chr1 2359852 DUP CALL_659_ebV_0 FP call 0.0137 0 0 724 11 hg19 1.0 1663906.0 1.0 2291291.0 0 11 UNEVALUABLE UNEVALUABLE
659_ebV intergenic(WNT4,ZBTB40) EPHA8 chr1 22228519 chr1 22601038 DUP CALL_659_ebV_1 TP call 0.9793 0 0 3 3732 hg19 1.0 22555012.0 1.0 22927531.0 0 3 UNEVALUABLE UNEVALUABLE
659_ebV OTUD7B HORMAD1 chr1 149944337 chr1 150715694 DUP CALL_659_ebV_2 TP call 0.9949 0 0 3676 6 hg19 1.0 149916236.0 1.0 150688170.0 0 6 UNEVALUABLE UNEVALUABLE
659_ebV RPRD2 intergenic(SPRR2G,LELP1) chr1 150457371 chr1 153164750 DUP CALL_659_ebV_3 TP call 0.548 0 0 842 0 hg19 1.0 150429847.0 1.0 153137226.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebV LAMC2 intergenic(IVNS1ABP,HMCN1) chr1 183240079 chr1 185587635 DUP CALL_659_ebV_4 TP call 0.9955 0 0 2250 2 hg19 1.0 183209214.0 1.0 185556767.0 0 2 UNEVALUABLE UNEVALUABLE
659_ebV NFASC SLC45A3 chr1 204878685 chr1 205666628 DUP CALL_659_ebV_5 FP call 0.0002 0 0 2 1 hg19 1.0 204847813.0 1.0 205635756.0 0 1 UNEVALUABLE UNEVALUABLE
659_ebV KIF26B VN1R5 chr1 245446662 chr1 247257105 DUP CALL_659_ebV_6 TP call 0.0319 0 0 1 1880 hg19 1.0 245609964.0 1.0 247420407.0 0 1 UNEVALUABLE UNEVALUABLE
659_ebV WDR43 CLIP4 chr2 28895181 chr2 29133808 DUP CALL_659_ebV_7 TP call 0.755 0 0 1216 680 hg19 2.0 29118047.0 2.0 29356674.0 0 680 EVALUABLE BAM_REFUTED
659_ebV ACYP2 PSME4 chr2 54079329 chr2 53920985 BND CALL_659_ebV_8 TP_DUP call 0.9956 1 0 3 700 hg19 2.0 54306466.0 2.0 54148122.0 1 3 UNEVALUABLE UNEVALUABLE
659_ebV ALMS1 LRRTM4 chr2 73448740 chr2 76934997 DUP CALL_659_ebV_9 TP call 0.8982 0 0 4628 0 hg19 2.0 73675867.0 2.0 77162123.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebV intergenic(AOX1,BZW1) HYCC2 chr2 200696895 chr2 201009079 DUP CALL_659_ebV_10 TP call 0.9902 0 0 3 264 hg19 2.0 201561618.0 2.0 201873802.0 0 3 UNEVALUABLE UNEVALUABLE
659_ebV CYP20A1 RAPH1 chr2 203272701 chr2 203452809 DUP CALL_659_ebV_11 FP call 0.0092 0 0 350 1 hg19 2.0 204137424.0 2.0 204317532.0 0 1 UNEVALUABLE UNEVALUABLE
659_ebV MAP4 P4HTM chr3 48086187 chr3 49006906 DUP CALL_659_ebV_12 TP call 0.0652 0 0 16 1263 hg19 3.0 48127677.0 3.0 49044339.0 0 16 UNEVALUABLE UNEVALUABLE
659_ebV intergenic(PEX5L,TTC14) ENSG00000283765 chr3 180303053 chr3 183833773 DUP CALL_659_ebV_13 FP call 0.3288 0 0 2 569 hg19 3.0 180020841.0 3.0 183551561.0 0 2 UNEVALUABLE UNEVALUABLE
659_ebV ZNF595 NSD2 chr4 88122 chr4 1978897 DUP CALL_659_ebV_14 TP call 0.7761 0 0 70 4758 hg19 4.0 88010.0 4.0 1980624.0 0 70 EVALUABLE BAM_REFUTED
659_ebV intergenic(COX7C,RASA1) RASA1 chr5 87026496 chr5 87268043 DUP CALL_659_ebV_15 FP call 0.0002 0 0 0 1003 hg19 5.0 86322313.0 5.0 86563860.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebV OR2B2 intergenic(OR2B2,OR2B6) chr6 27912214 chr6 27912807 DEL CALL_659_ebV_16 TP call 0.158 165 0 2261 196 hg19 6.0 27879992.0 6.0 27880585.0 165 196 EVALUABLE BAM_CONFIRMED
659_ebV TRERF1 CCND3 chr6 42276894 chr6 41941644 BND CALL_659_ebV_17 FP call 0.0004 0 0 0 6492 hg19 6.0 42244632.0 6.0 41909382.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebV TSPYL4 intergenic(NUS1,SLC35F1) chr6 116253428 chr6 117888100 DUP CALL_659_ebV_18 TP call 0.9265 0 0 5019 0 hg19 6.0 116574591.0 6.0 118209263.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebV NACAD intergenic(UPP1,ABCA13) chr7 45085807 chr7 48118054 DUP CALL_659_ebV_19 FP call 0.2159 0 0 4687 14 hg19 7.0 45125406.0 7.0 48157651.0 0 14 UNEVALUABLE UNEVALUABLE
659_ebV KMT2E NAMPT chr7 105112880 chr7 106276456 DUP CALL_659_ebV_20 TP call 0.9978 0 0 3994 99 hg19 7.0 104753327.0 7.0 105916902.0 0 99 EVALUABLE BAM_REFUTED
659_ebV POP1 SPAG1 chr8 98158068 chr8 100253426 DUP CALL_659_ebV_21 TP call 0.0214 0 0 2663 0 hg19 8.0 99170296.0 8.0 101265654.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebV PDCD1LG2 intergenic(KDM4C,DMAC1) chr9 5570290 chr9 7490151 DUP CALL_659_ebV_22 FP call 0.0001 0 0 1986 0 hg19 9.0 5570290.0 9.0 7490151.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebV DAPK1 CASC3 chr9 87571456 chr17 40140583 BND CALL_659_ebV_23 FP call 0.0007 0 0 53 953 hg19 9.0 90186371.0 17.0 38296836.0 0 53 EVALUABLE BAM_REFUTED
659_ebV intergenic(OR1L6,OR5C1) SCAI chr9 122785291 chr9 124971743 DUP CALL_659_ebV_24 FP call 0.0076 0 0 0 881 hg19 9.0 125547570.0 9.0 127734022.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebV intergenic(ZNF22,OR13A1) ALOX5 chr10 45194439 chr10 45444266 DUP CALL_659_ebV_25 FP call 0.9648 0 0 359 2251 hg19 10.0 45689887.0 10.0 45939714.0 0 359 EVALUABLE BAM_REFUTED
659_ebV PNPLA2 CLCN6 chr11 824326 chr1 11839141 BND CALL_659_ebV_26 TP_DUP call 0.9894 0 0 3676 617 hg19 11.0 824326.0 1.0 11899198.0 0 617 EVALUABLE BAM_REFUTED
659_ebV PRB2 ETV6 chr12 11422215 chr12 11786368 DUP CALL_659_ebV_27 FP call 0.0044 0 0 3 0 hg19 12.0 11575149.0 12.0 11939302.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebV MYBPC1 FZD5 chr12 101677327 chr2 207762959 BND CALL_659_ebV_28 TP_DUP call 0.7864 0 0 828 0 hg19 12.0 102071105.0 2.0 208627683.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebV ADAM10 TMPRSS2 chr15 58660953 chr21 41487688 BND CALL_659_ebV_29 FP call 0.9408 0 0 0 179 hg19 15.0 58953152.0 21.0 42859615.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebV CHD2 intergenic(MCTP2,NR2F2) chr15 92902030 chr15 94775839 DUP CALL_659_ebV_30 FP call 0.5184 0 0 39 0 hg19 15.0 93445260.0 15.0 95319068.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebV intergenic(NR2F2,ARRDC4) IGF1R chr15 97745098 chr15 98957967 DUP CALL_659_ebV_31 FP call 0.9036 0 0 0 1537 hg19 15.0 98288328.0 15.0 99501196.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebV IGFALS SLX4 chr16 1792713 chr16 3590009 DUP CALL_659_ebV_32 FP call 0.0069 0 0 1183 4196 hg19 16.0 1842714.0 16.0 3640010.0 0 1183 EVALUABLE BAM_REFUTED
659_ebV TMC7 KNOP1 chr16 19056557 chr16 19709445 DUP CALL_659_ebV_33 FP call 0.0154 0 0 946 3 hg19 16.0 19067879.0 16.0 19720767.0 0 3 UNEVALUABLE UNEVALUABLE
659_ebV CDK12 TMPRSS2 chr17 39535865 chr21 41502580 BND CALL_659_ebV_34 TP call 0.9896 0 0 0 12580 hg19 17.0 37692118.0 21.0 42874507.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebV ANKFN1 VMP1 chr17 56372774 chr17 59781938 DUP CALL_659_ebV_35 TP call 0.909 0 0 883 10 hg19 17.0 54450135.0 17.0 57859299.0 0 10 UNEVALUABLE UNEVALUABLE
659_ebV TBC1D16 FASN chr17 80032304 chr17 82083342 DEL CALL_659_ebV_36 TP call 0.0158 0 0 0 4185 hg19 17.0 78006103.0 17.0 80041218.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebV intergenic(ZNF30,ZNF792) IFNL4 chr19 34951456 chr19 39248452 DUP CALL_659_ebV_37 FP call 0.2189 1 1 11 1519 hg19 19.0 35442360.0 19.0 39739092.0 2 11 UNEVALUABLE UNEVALUABLE
659_ebV MYH14 PPP2R1A chr19 50193400 chr19 52190254 DUP CALL_659_ebV_38 FP call 0.0001 0 0 7 1326 hg19 19.0 50696657.0 19.0 52693507.0 0 7 UNEVALUABLE UNEVALUABLE
659_ebV KLK9 intergenic(DPRX,NLRP12) chr19 51003221 chr19 53752597 DUP CALL_659_ebV_39 FP call 0.0045 0 0 1074 16 hg19 19.0 51506477.0 19.0 54255851.0 0 16 UNEVALUABLE UNEVALUABLE
659_ebV PTPRH EPN1 chr19 55198677 chr19 55680293 DUP CALL_659_ebV_40 FP call 0.0024 0 0 1410 0 hg19 19.0 55710045.0 19.0 56191659.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebV intergenic(OLIG1,IFNAR2) SON chr21 33201277 chr21 33551659 DUP CALL_659_ebV_41 FP call 0.0005 0 0 5 7352 hg19 21.0 34573582.0 21.0 34923965.0 0 5 UNEVALUABLE UNEVALUABLE
659_ebV intergenic(.,.) HLA-DRB1 chr6_GL000251v2_alt 3924039 chr6 32589806 BND CALL_659_ebV_42 FP call 0.0 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_ebV intergenic(.,.) HLA-DQB1 chr6_GL000256v2_alt 4057284 chr6 32659911 BND CALL_659_ebV_43 FP call 0.0 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_ebV intergenic(.,.) MUC3A chrUn_JTFH01000054v1_decoy 1338 chr7 100955585 BND CALL_659_ebV_44 FP call 0.0025 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_ebV CLCN6 PNPLA2 chr1 11839140 chr11 824325 TRANSLOCATION TRUTH_659_ebV_45 TRUTH truth 77.0 0 0 618 3676 hg19 1.0 11899197.0 11.0 824325.0 0 618 EVALUABLE BAM_REFUTED
659_ebV intergenic(WNT4,ZBTB40) EPHA8 chr1 22228518 chr1 22601037 DUPLICATION TRUTH_659_ebV_46 TRUTH truth 152.0 0 0 3 3732 hg19 1.0 22555011.0 1.0 22927530.0 0 3 UNEVALUABLE UNEVALUABLE
659_ebV OTUD7B HORMAD1 chr1 149944336 chr1 150715693 DUPLICATION TRUTH_659_ebV_47 TRUTH truth 190.0 0 0 3667 6 hg19 1.0 149916235.0 1.0 150688169.0 0 6 UNEVALUABLE UNEVALUABLE
659_ebV RPRD2 intergenic(SPRR2G,LELP1) chr1 150457370 chr1 153164749 DUPLICATION TRUTH_659_ebV_48 TRUTH truth 70.0 0 0 842 0 hg19 1.0 150429846.0 1.0 153137225.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebV LAMC2 intergenic(IVNS1ABP,HMCN1) chr1 183240078 chr1 185587634 DUPLICATION TRUTH_659_ebV_49 TRUTH truth 62.0 0 0 2249 2 hg19 1.0 183209213.0 1.0 185556766.0 0 2 UNEVALUABLE UNEVALUABLE
659_ebV KIF26B VN1R5 chr1 245446661 chr1 247257104 DUPLICATION TRUTH_659_ebV_50 TRUTH truth 23.0 0 0 1 1887 hg19 1.0 245609963.0 1.0 247420406.0 0 1 UNEVALUABLE UNEVALUABLE
659_ebV WDR43 CLIP4 chr2 28895180 chr2 29133807 DUPLICATION TRUTH_659_ebV_51 TRUTH truth 29.0 0 0 1217 680 hg19 2.0 29118046.0 2.0 29356673.0 0 680 EVALUABLE BAM_REFUTED
659_ebV PSME4 ACYP2 chr2 53920983 chr2 54079327 INVERSION TRUTH_659_ebV_52 TRUTH truth 82.0 1 0 702 3 hg19 2.0 54148120.0 2.0 54306464.0 1 3 UNEVALUABLE UNEVALUABLE
659_ebV ALMS1 LRRTM4 chr2 73448739 chr2 76934996 DUPLICATION TRUTH_659_ebV_53 TRUTH truth 201.0 0 0 4626 0 hg19 2.0 73675866.0 2.0 77162122.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebV intergenic(AOX1,BZW1) HYCC2 chr2 200696894 chr2 201009078 DUPLICATION TRUTH_659_ebV_54 TRUTH truth 132.0 0 0 3 264 hg19 2.0 201561617.0 2.0 201873801.0 0 3 UNEVALUABLE UNEVALUABLE
659_ebV FZD5 MYBPC1 chr2 207762958 chr12 101677326 TRANSLOCATION TRUTH_659_ebV_55 TRUTH truth 57.0 0 0 0 828 hg19 2.0 208627682.0 12.0 102071104.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebV MAP4 P4HTM chr3 48086186 chr3 49006905 DUPLICATION TRUTH_659_ebV_56 TRUTH truth 38.0 0 0 16 1256 hg19 3.0 48127676.0 3.0 49044338.0 0 16 UNEVALUABLE UNEVALUABLE
659_ebV ZNF595 NSD2 chr4 88121 chr4 1978896 DUPLICATION TRUTH_659_ebV_57 TRUTH truth 244.0 0 0 71 4758 hg19 4.0 88009.0 4.0 1980623.0 0 71 EVALUABLE BAM_REFUTED
659_ebV OR2B2 intergenic(OR2B2,OR2B6) chr6 27912213 chr6 27912806 DELETION TRUTH_659_ebV_58 TRUTH truth 52.0 165 0 2266 196 hg19 6.0 27879991.0 6.0 27880584.0 165 196 EVALUABLE BAM_CONFIRMED
659_ebV TSPYL4 intergenic(NUS1,SLC35F1) chr6 116253427 chr6 117888099 DUPLICATION TRUTH_659_ebV_59 TRUTH truth 224.0 0 0 5018 0 hg19 6.0 116574590.0 6.0 118209262.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebV SRPK2 NAMPT chr7 105112879 chr7 106276455 DUPLICATION TRUTH_659_ebV_60 TRUTH truth 212.0 0 0 3996 98 hg19 7.0 104753326.0 7.0 105916901.0 0 98 EVALUABLE BAM_REFUTED
659_ebV POP1 SPAG1 chr8 98158067 chr8 100253425 DUPLICATION TRUTH_659_ebV_61 TRUTH truth 68.0 0 0 2663 0 hg19 8.0 99170295.0 8.0 101265653.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebV CDK12 TMPRSS2 chr17 39535864 chr21 41502579 TRANSLOCATION TRUTH_659_ebV_62 TRUTH truth 626.0 0 0 0 12599 hg19 17.0 37692117.0 21.0 42874506.0 0 0 UNEVALUABLE UNEVALUABLE
659_ebV ANKFN1 VMP1 chr17 56372773 chr17 59781937 DUPLICATION TRUTH_659_ebV_63 TRUTH truth 191.0 0 0 883 10 hg19 17.0 54450134.0 17.0 57859298.0 0 10 UNEVALUABLE UNEVALUABLE
659_ebV TBC1D16 FASN chr17 80032303 chr17 82083341 DELETION TRUTH_659_ebV_64 TRUTH truth 25.0 0 0 0 4182 hg19 17.0 78006102.0 17.0 80041217.0 0 0 UNEVALUABLE UNEVALUABLE
659_epG NIPBL WDR70 chr5 36976096 chr5 37725791 DEL CALL_659_epG_0 FP call 0.0854 0 0 1977 14 hg19 5 36976198.0 5 37725893.0 0 14 UNEVALUABLE UNEVALUABLE
659_epG intergenic(HLA-A,POLR1H) HLA-C chr6 29957506 chr6 31270428 BND CALL_659_epG_1 FP call 0.0 0 0 102 6714 hg19 6 29925283.0 6 31238205.0 0 102 EVALUABLE BAM_REFUTED
659_epG HLA-C HLA-A chr6 31268797 chr6 29945692 BND CALL_659_epG_2 FP call 0.0 0 0 5813 6237 hg19 6 31236574.0 6 29913469.0 0 5813 EVALUABLE BAM_REFUTED
659_epG HLA-C HLA-B chr6 31271361 chr6 31356513 DUP CALL_659_epG_3 FP call 0.0 51 0 8641 8934 hg19 6 31239138.0 6 31324290.0 51 8641 EVALUABLE BAM_CONFIRMED
659_epG intergenic(HLA-B,MICA) HLA-A chr6 31382229 chr6 29945097 BND CALL_659_epG_4 FP call 0.0001 0 0 139 8601 hg19 6 31350006.0 6 29912874.0 0 139 EVALUABLE BAM_REFUTED
659_epG SNAP91 intergenic(TPD52,ZBTB10) chr6 83560171 chr8 80448474 BND CALL_659_epG_5 FP call 0.0 0 0 470 8 hg19 6 84269890.0 8 81360709.0 0 8 UNEVALUABLE UNEVALUABLE
659_epG PBX3 MYO15B chr9 125943575 chr17 75619698 BND CALL_659_epG_6 FP call 0.878 0 0 14 6 hg19 9 128705854.0 17 73615778.0 0 6 UNEVALUABLE UNEVALUABLE
659_epG PTEN RBM20 chr10 87897391 chr10 110812475 DEL CALL_659_epG_7 TP call 0.9955 0 0 14 2436 hg19 10 89657148.0 10 112572233.0 0 14 UNEVALUABLE UNEVALUABLE
659_epG intergenic(ZFP36L1,ACTN1) QRICH2 chr14 68873298 chr17 76278123 BND CALL_659_epG_8 TP call 0.9552 0 0 2 1063 hg19 14 69340015.0 17 74274204.0 0 2 UNEVALUABLE UNEVALUABLE
659_epG intergenic(HS3ST3B1,PMP22) MPDU1 chr17 14662419 chr17 7587264 BND CALL_659_epG_9 TP_DUP call 0.9957 0 0 5 2085 hg19 17 14565736.0 17 7490582.0 0 5 UNEVALUABLE UNEVALUABLE
659_epG PRKCA QRICH2 chr17 66744122 chr17 76278138 BND CALL_659_epG_10 TP call 0.9527 0 0 0 1063 hg19 17 64740240.0 17 74274219.0 0 0 UNEVALUABLE UNEVALUABLE
659_epG CHMP4B HNRNPUL1 chr20 33814587 chr19 41294590 BND CALL_659_epG_11 TP_DUP call 0.3637 0 0 8 1439 hg19 20 32402393.0 19 41800495.0 0 8 UNEVALUABLE UNEVALUABLE
659_epG ERG TMPRSS2 chr21 38491965 chr21 41496141 DEL CALL_659_epG_12 TP call 0.9995 0 0 7 9318 hg19 21 39863889.0 21 42868068.0 0 7 UNEVALUABLE UNEVALUABLE
659_epG ERG TMPRSS2 chr21 38491964 chr21 41496140 DELETION TRUTH_659_epG_13 TRUTH truth 490.0 0 0 7 9323 hg19 21 39863888.0 21 42868067.0 0 7 UNEVALUABLE UNEVALUABLE
659_epG PTEN RBM20 chr10 87897390 chr10 110812474 DELETION TRUTH_659_epG_14 TRUTH truth 78.0 0 0 14 2435 hg19 10 89657147.0 10 112572232.0 0 14 UNEVALUABLE UNEVALUABLE
659_epG PALD1 SGPL1 chr10 70587127 chr10 70876581 DUPLICATION TRUTH_659_epG_15 TRUTH truth 46.0 0 0 10 589 hg19 10 72346883.0 10 72636338.0 0 10 UNEVALUABLE UNEVALUABLE
659_epG SUSD6 LLGL2 chr14 69669153 chr17 75563432 TRANSLOCATION TRUTH_659_epG_16 TRUTH truth 61.0 0 0 16 2223 hg19 14 70135870.0 17 73559513.0 0 16 UNEVALUABLE UNEVALUABLE
659_epG MPDU1 intergenic(HS3ST3B1,PMP22) chr17 7587262 chr17 14662419 INVERSION TRUTH_659_epG_17 TRUTH truth 148.0 0 0 2089 5 hg19 17 7490580.0 17 14565736.0 0 5 UNEVALUABLE UNEVALUABLE
659_epG PRKCA QRICH2 chr17 66744120 chr17 76278136 INVERSION TRUTH_659_epG_18 TRUTH truth 95.0 0 0 0 1063 hg19 17 64740238.0 17 74274217.0 0 0 UNEVALUABLE UNEVALUABLE
659_epG HNRNPUL1 CHMP4B chr19 41294587 chr20 33814586 TRANSLOCATION TRUTH_659_epG_19 TRUTH truth 66.0 0 0 1439 8 hg19 19 41800492.0 20 32402392.0 0 8 UNEVALUABLE UNEVALUABLE
659_epG intergenic(ZFP36L1,ACTN1) QRICH2 chr14 68873297 chr17 76278122 TRANSLOCATION TRUTH_659_epG_20 TRUTH truth 53.0 0 0 2 1063 hg19 14 69340014.0 17 74274203.0 0 2 UNEVALUABLE UNEVALUABLE
659_eu1 TENT5C intergenic(SLC25A13,SEM1) chr1 117627941 chr7 96332431 BND CALL_659_eu1_0 FP call 0.0 0 0 0 3 hg19 1 118170563.0 7 95961743.0 0 0 UNEVALUABLE UNEVALUABLE
659_eu1 EXOC6B TMPRSS2 chr2 72301353 chr21 41485911 BND CALL_659_eu1_1 FP call 0.0403 0 0 0 11 hg19 2 72528482.0 21 42857838.0 0 0 UNEVALUABLE UNEVALUABLE
659_eu1 CLASP1 NRG1 chr2 121339170 chr8 32640246 BND CALL_659_eu1_2 FP call 0.0 0 0 5 14 hg19 2 122096746.0 8 32497765.0 0 5 UNEVALUABLE UNEVALUABLE
659_eu1 intergenic(MITF,MDFIC2) NRG1 chr3 69969345 chr8 32640246 BND CALL_659_eu1_3 FP call 0.0 0 0 9 14 hg19 3 70018496.0 8 32497765.0 0 9 UNEVALUABLE UNEVALUABLE
659_eu1 intergenic(STIM2,PCDH7) NRG1 chr4 27922414 chr8 32640246 BND CALL_659_eu1_4 FP call 0.0 0 0 0 14 hg19 4 27924036.0 8 32497765.0 0 0 UNEVALUABLE UNEVALUABLE
659_eu1 CDH18 NRG1 chr5 20010160 chr8 32640246 BND CALL_659_eu1_5 FP call 0.0 0 0 4 14 hg19 5 20010269.0 8 32497765.0 0 4 UNEVALUABLE UNEVALUABLE
659_eu1 intergenic(MIER3,GPBP1) NRG1 chr5 57105410 chr8 32640246 BND CALL_659_eu1_6 FP call 0.0 0 0 0 14 hg19 5 56401237.0 8 32497765.0 0 0 UNEVALUABLE UNEVALUABLE
659_eu1 intergenic(HLA-DQB2,HLA-DOB) PTCH1 chr6 32807061 chr9 95444217 BND CALL_659_eu1_7 FP call 0.0 0 0 2 0 hg19 6 32774838.0 9 98206499.0 0 0 UNEVALUABLE UNEVALUABLE
659_eu1 LRFN2 NRG1 chr6 40396687 chr8 32640246 BND CALL_659_eu1_8 FP call 0.0 0 0 5 14 hg19 6 40364426.0 8 32497765.0 0 5 UNEVALUABLE UNEVALUABLE
659_eu1 PRUNE2 ETV1 chr9 76872684 chr7 13932018 BND CALL_659_eu1_9 FP call 0.0 0 0 7 3323 hg19 9 79487600.0 7 13971643.0 0 7 UNEVALUABLE UNEVALUABLE
659_eu1 intergenic(SEC23IP,PLPP4) NRG1 chr10 120430073 chr8 32640246 BND CALL_659_eu1_10 FP call 0.0 0 0 0 14 hg19 10 122189585.0 8 32497765.0 0 0 UNEVALUABLE UNEVALUABLE
659_eu1 intergenic(TMEM132B,TMEM132C) GREM1 chr12 126342836 chr15 32744578 BND CALL_659_eu1_11 FP call 0.0 0 0 2 22 hg19 12 126827382.0 15 33036779.0 0 2 UNEVALUABLE UNEVALUABLE
659_eu1 HS6ST3 NTRK3 chr13 96274842 chr15 88010748 BND CALL_659_eu1_12 FP call 0.0 0 0 9 0 hg19 13 96927096.0 15 88553979.0 0 0 UNEVALUABLE UNEVALUABLE
659_eu1 intergenic(ARRDC4,IGF1R) NRG1 chr15 98612539 chr8 32691071 BND CALL_659_eu1_13 FP call 0.0 0 0 7 4 hg19 15 99155768.0 8 32548589.0 0 4 UNEVALUABLE UNEVALUABLE
659_eu1 PHF8 HLA-DRB5 chrX 54044557 chr6 32522014 BND CALL_659_eu1_14 FP call 0.0 0 0 840 1388 hg19 X 54070990.0 6 32489791.0 0 840 EVALUABLE BAM_REFUTED
659_eu1 intergenic(.,.) HLA-DPB1 chr6_GL000251v2_alt 4501315 chr6 33089356 BND CALL_659_eu1_15 FP call 0.0003 0 0 0 0 hg19 6 33057318.0 6 33057133.0 0 0 UNEVALUABLE UNEVALUABLE
659_ewn SLC25A34 SPEN chr1 15737219 chr1 15847900 DUP CALL_659_ewn_0 FP call 0.0064 0 0 1194 962 hg19 1.0 16063714.0 1.0 16174395.0 0 962 EVALUABLE BAM_REFUTED
659_ewn RBM5 SEMA3B chr3 50110616 chr3 50273636 DUP CALL_659_ewn_1 TP call 0.7689 0 0 862 3634 hg19 3.0 50148049.0 3.0 50311067.0 0 862 EVALUABLE BAM_REFUTED
659_ewn RBM5 GNAI2 chr3 50114142 chr3 50257049 DUP CALL_659_ewn_2 FP call 0.0001 0 0 1174 1284 hg19 3.0 50151575.0 3.0 50294481.0 0 1174 EVALUABLE BAM_REFUTED
659_ewn intergenic(RBM5,SEMA3F) RBM5 chr3 50121589 chr3 50114244 BND CALL_659_ewn_3 FP call 0.002 0 0 0 1107 hg19 3.0 50159022.0 3.0 50151677.0 0 0 UNEVALUABLE UNEVALUABLE
659_ewn intergenic(RBM5,SEMA3F) GNAI2 chr3 50121792 chr3 50256990 BND CALL_659_ewn_4 FP call 0.015 0 0 0 1191 hg19 3.0 50159225.0 3.0 50294422.0 0 0 UNEVALUABLE UNEVALUABLE
659_ewn NIPBL CPLANE1 chr5 37060934 chr5 37193974 DEL CALL_659_ewn_5 FP call 0.0024 0 0 599 0 hg19 5.0 37061036.0 5.0 37194076.0 0 0 UNEVALUABLE UNEVALUABLE
659_ewn HLA-G HLA-B chr6 29827771 chr6 31357045 BND CALL_659_ewn_6 FP call 0.0 0 0 2591 6900 hg19 6.0 29795548.0 6.0 31324822.0 0 2591 EVALUABLE BAM_REFUTED
659_ewn HLA-C HLA-A chr6 31271518 chr6 29943107 BND CALL_659_ewn_7 FP call 0.0 0 0 10579 11242 hg19 6.0 31239295.0 6.0 29910884.0 0 10579 EVALUABLE BAM_REFUTED
659_ewn intergenic(UST,TAB2) TAB2 chr6 149184858 chr6 149378077 DUP CALL_659_ewn_8 FP call 0.2562 0 0 3 1627 hg19 6.0 149505994.0 6.0 149699213.0 0 3 UNEVALUABLE UNEVALUABLE
659_ewn intergenic(OR4D11,OR4D9) OSBP chr11 59508211 chr11 59615392 DUP CALL_659_ewn_9 FP call 0.0921 0 0 6 1637 hg19 11.0 59275684.0 11.0 59382865.0 0 6 UNEVALUABLE UNEVALUABLE
659_ewn NAB2 STAT6 chr12 57093061 chr12 57111326 BND CALL_659_ewn_10 TP_DUP call 0.9995 0 0 10660 0 hg19 12.0 57486844.0 12.0 57505109.0 0 0 UNEVALUABLE UNEVALUABLE
659_ewn RASSF3 TP53 chr12 64614074 chr17 7680436 BND CALL_659_ewn_11 FP call 0.0 0 0 18 22 hg19 12.0 65007854.0 17.0 7583754.0 0 18 UNEVALUABLE UNEVALUABLE
659_ewn MYH1 intergenic(.,.) chr17 10512154 chr17_KI270729v1_random 4960 BND CALL_659_ewn_12 FP call 0.0113 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_ewn CASC3 DAPK1 chr17 40140586 chr9 87571360 BND CALL_659_ewn_13 FP call 0.0019 1 0 970 41 hg19 17.0 38296839.0 9.0 90186275.0 1 41 EVALUABLE BAM_AMBIGUOUS
659_ewn DNAH17 RPTOR chr17 78552768 chr17 80754892 BND CALL_659_ewn_14 FP call 0.8914 0 0 404 49 hg19 17.0 76548850.0 17.0 78728692.0 0 49 EVALUABLE BAM_REFUTED
659_ewn TCF3 ADGRE1 chr19 1612334 chr19 6934909 BND CALL_659_ewn_15 TP call 0.5469 0 0 4136 484 hg19 19.0 1612333.0 19.0 6934920.0 0 484 EVALUABLE BAM_REFUTED
659_ewn EEF2 ZBTB7A chr19 3980181 chr19 4045579 DEL CALL_659_ewn_16 FP call 0.9467 0 0 2988 0 hg19 19.0 3980179.0 19.0 4045577.0 0 0 UNEVALUABLE UNEVALUABLE
659_ewn intergenic(FEM1A,TICAM1) NRTN chr19 4813731 chr19 5827869 DEL CALL_659_ewn_17 FP call 0.0141 0 0 17 1413 hg19 19.0 4813743.0 19.0 5827880.0 0 17 UNEVALUABLE UNEVALUABLE
659_ewn CATSPERD intergenic(NFILZ,ACTL9) chr19 5778551 chr19 8691001 DEL CALL_659_ewn_18 FP call 0.2083 0 0 1410 1 hg19 19.0 5778562.0 19.0 8801250.0 0 1 UNEVALUABLE UNEVALUABLE
659_ewn GET3 NIBAN3 chr19 12737285 chr19 17551814 DEL CALL_659_ewn_19 FP call 0.3341 0 0 1467 14 hg19 19.0 12848099.0 19.0 17662623.0 0 14 UNEVALUABLE UNEVALUABLE
659_ewn JUNB ZBTB7A chr19 12792350 chr19 4046151 BND CALL_659_ewn_20 FP call 0.0627 0 0 3857 0 hg19 19.0 12903164.0 19.0 4046149.0 0 0 UNEVALUABLE UNEVALUABLE
659_ewn intergenic(.,.) MUC3A chrUn_JTFH01000054v1_decoy 3271 chr7 100952711 BND CALL_659_ewn_21 FP call 0.0464 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_ewn intergenic(.,.) MUC16 chrUn_JTFH01000107v1_decoy 1429 chr19 8897517 BND CALL_659_ewn_22 FP call 0.0001 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_ewn RBM5 SEMA3B chr3 50110615 chr3 50273635 DUPLICATION TRUTH_659_ewn_23 TRUTH truth 27.0 0 0 862 3634 hg19 3.0 50148048.0 3.0 50311066.0 0 862 EVALUABLE BAM_REFUTED
659_ewn NAB2 STAT6 chr12 57093059 chr12 57111324 INVERSION TRUTH_659_ewn_24 TRUTH truth 479.0 0 0 10663 0 hg19 12.0 57486842.0 12.0 57505107.0 0 0 UNEVALUABLE UNEVALUABLE
659_ewn TCF3 ADGRE1 chr19 1612332 chr19 6934907 INVERSION TRUTH_659_ewn_25 TRUTH truth 246.0 0 0 4149 484 hg19 19.0 1612331.0 19.0 6934918.0 0 484 EVALUABLE BAM_REFUTED
659_fap DTNB ETV1 chr2 25662652 chr7 13932069 BND CALL_659_fap_0 FP call 0.0 0 0 5 2552 hg19 2 25885521.0 7.0 13971694.0 0 5 UNEVALUABLE UNEVALUABLE
659_fap ALK intergenic(RPIA,AQP7B) chr2 29223890 chr2 89800291 DUP CALL_659_fap_1 TP call 0.0789 0 0 10517 1 hg19 2 29446756.0 2.0 89839101.0 0 1 UNEVALUABLE UNEVALUABLE
659_fap EML4 ALK chr2 42300957 chr2 29223769 BND CALL_659_fap_2 TP_DUP call 0.9945 0 0 517 11461 hg19 2 42528097.0 2.0 29446635.0 0 517 EVALUABLE BAM_REFUTED
659_fap PID1 ETV1 chr2 229046398 chr7 13932070 BND CALL_659_fap_3 FP call 0.0 0 0 5 2548 hg19 2 229911114.0 7.0 13971695.0 0 5 UNEVALUABLE UNEVALUABLE
659_fap PHLDB2 ETV1 chr3 111751207 chr7 13932070 BND CALL_659_fap_4 FP call 0.0 0 0 9 2548 hg19 3 111470054.0 7.0 13971695.0 0 9 UNEVALUABLE UNEVALUABLE
659_fap intergenic(PDHA2,STPG2) GID4 chr4 96772392 chr17 18066485 BND CALL_659_fap_5 FP call 0.0001 0 0 1 2 hg19 4 97693543.0 17.0 17969799.0 0 1 UNEVALUABLE UNEVALUABLE
659_fap intergenic(PDE5A,MAD2L1) ETV1 chr4 119651182 chr7 13932069 BND CALL_659_fap_6 FP call 0.0 0 0 19 2552 hg19 4 120572337.0 7.0 13971694.0 0 19 UNEVALUABLE UNEVALUABLE
659_fap intergenic(C4orf33,PCDH10) GID4 chr4 129931018 chr17 18066485 BND CALL_659_fap_7 FP call 0.0 0 0 8 2 hg19 4 130852173.0 17.0 17969799.0 0 2 UNEVALUABLE UNEVALUABLE
659_fap ZNF346 BCL2 chr5 177038915 chr18 63128464 BND CALL_659_fap_8 FP call 0.0001 0 0 4 11590 hg19 5 176465916.0 18.0 60795697.0 0 4 UNEVALUABLE UNEVALUABLE
659_fap HLA-A HLA-C chr6 29943089 chr6 31271689 BND CALL_659_fap_9 FP call 0.0 0 0 11111 9520 hg19 6 29910866.0 6.0 31239466.0 0 9520 EVALUABLE BAM_REFUTED
659_fap intergenic(NXPH1,NDUFA4) BCL2 chr7 9307183 chr18 63128464 BND CALL_659_fap_10 FP call 0.0002 0 0 21 11590 hg19 7 9346813.0 18.0 60795697.0 0 21 EVALUABLE BAM_REFUTED
659_fap ETV1 intergenic(MEIS2,TMCO5A) chr7 13932069 chr15 37424808 BND CALL_659_fap_11 FP call 0.0 0 0 2552 2 hg19 7 13971694.0 15.0 37717009.0 0 2 UNEVALUABLE UNEVALUABLE
659_fap RAB11FIP1 STXBP4 chr8 37895843 chr17 55047118 BND CALL_659_fap_12 FP call 0.0 0 0 5 238 hg19 8 37753361.0 17.0 53124479.0 0 5 UNEVALUABLE UNEVALUABLE
659_fap JRK BCL2 chr8 142667433 chr18 63128465 BND CALL_659_fap_13 FP call 0.0002 0 0 3 11586 hg19 8 143748851.0 18.0 60795698.0 0 3 UNEVALUABLE UNEVALUABLE
659_fap PARD3 ETV1 chr10 34579594 chr7 13932070 BND CALL_659_fap_14 FP call 0.0 0 0 14 2548 hg19 10 34868522.0 7.0 13971695.0 0 14 UNEVALUABLE UNEVALUABLE
659_fap LRMDA ETV1 chr10 75823728 chr7 13932070 BND CALL_659_fap_15 FP call 0.0 0 0 2 2548 hg19 10 77583486.0 7.0 13971695.0 0 2 UNEVALUABLE UNEVALUABLE
659_fap HYOU1 NFRKB chr11 119057148 chr11 129882562 DEL CALL_659_fap_16 TP call 0.9672 0 0 2 1257 hg19 11 118927859.0 11.0 129752457.0 0 2 UNEVALUABLE UNEVALUABLE
659_fap intergenic(KIRREL3,ETS1) ATXN7 chr11 127677209 chr3 64003359 BND CALL_659_fap_17 FP call 0.0 0 0 0 0 hg19 11 127547104.0 3.0 63989035.0 0 0 UNEVALUABLE UNEVALUABLE
659_fap intergenic(SLC38A1,SLC38A2) BCL2 chr12 46296243 chr18 63128464 BND CALL_659_fap_18 FP call 0.0001 0 0 9 11590 hg19 12 46690026.0 18.0 60795697.0 0 9 UNEVALUABLE UNEVALUABLE
659_fap DDX23 intergenic(MYCL,MFSD2A) chr12 48843464 chr1 39902932 BND CALL_659_fap_19 FP call 0.0 0 0 466 2259 hg19 12 49237247.0 1.0 40368604.0 0 466 EVALUABLE BAM_REFUTED
659_fap intergenic(FGF9,SGCG) ETV1 chr13 22376908 chr7 13932070 BND CALL_659_fap_20 FP call 0.0 0 0 7 2548 hg19 13 22951047.0 7.0 13971695.0 0 7 UNEVALUABLE UNEVALUABLE
659_fap intergenic(CLEC14A,SEC23A) ETV1 chr14 38431284 chr7 13932070 BND CALL_659_fap_21 FP call 0.0 0 0 1 2548 hg19 14 38900488.0 7.0 13971695.0 0 1 UNEVALUABLE UNEVALUABLE
659_fap UBR1 EPB42 chr15 43049004 chr15 43209317 DUP CALL_659_fap_22 TP call 0.9934 0 0 130 1240 hg19 15 43341202.0 15.0 43501515.0 0 130 EVALUABLE BAM_REFUTED
659_fap intergenic(MCTP2,NR2F2) BCL2 chr15 95919714 chr18 63128464 BND CALL_659_fap_23 FP call 0.0004 0 0 2 11590 hg19 15 96462943.0 18.0 60795697.0 0 2 UNEVALUABLE UNEVALUABLE
659_fap SLC16A5 BCL2 chr17 75092860 chr18 63128464 BND CALL_659_fap_24 FP call 0.0001 0 0 165 11590 hg19 17 73088955.0 18.0 60795697.0 0 165 EVALUABLE BAM_REFUTED
659_fap intergenic(CDH2,DSC3) ETV1 chr18 30730644 chr7 13932070 BND CALL_659_fap_25 FP call 0.0 0 0 0 2548 hg19 18 28310610.0 7.0 13971695.0 0 0 UNEVALUABLE UNEVALUABLE
659_fap BCL2 intergenic(MARVELD2,OCLN) chr18 63128464 chr5 69449364 BND CALL_659_fap_26 FP call 0.0 0 0 11590 16 hg19 18 60795697.0 5.0 68745191.0 0 16 UNEVALUABLE UNEVALUABLE
659_fap intergenic(GGTLC2,IGLL5) BCL2 chr22 22760979 chr18 63128464 BND CALL_659_fap_27 FP call 0.0007 0 0 4 11590 hg19 22 23103472.0 18.0 60795697.0 0 4 UNEVALUABLE UNEVALUABLE
659_fap intergenic(PWWP3B,RADX) BCL2 chrX 106393379 chr18 63128465 BND CALL_659_fap_28 FP call 0.0006 0 0 5 11586 hg19 X 105636609.0 18.0 60795698.0 0 5 UNEVALUABLE UNEVALUABLE
659_fap intergenic(.,.) MUC3A chrUn_JTFH01000054v1_decoy 3201 chr7 100952814 BND CALL_659_fap_29 FP call 0.0004 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_fap intergenic(MCAM,RNF26) MFRP chr11 119323866 chr11 119343002 INVERSION TRUTH_659_fap_30 TRUTH truth 22.0 0 0 0 2112 hg19 11 119194576.0 11.0 119213712.0 0 0 UNEVALUABLE UNEVALUABLE
659_fap ALK EML4 chr2 29223767 chr2 42300957 INVERSION TRUTH_659_fap_31 TRUTH truth 60.0 0 0 11491 517 hg19 2 29446633.0 2.0 42528097.0 0 517 EVALUABLE BAM_REFUTED
659_fap intergenic(PPP2R2B,STK32A) HOXB6 chr5 147186364 chr17 48598111 TRANSLOCATION TRUTH_659_fap_32 TRUTH truth 232.0 0 0 2 1950 hg19 5 146565927.0 17.0 46675473.0 0 2 UNEVALUABLE UNEVALUABLE
659_fap UBR1 EPB42 chr15 43049003 chr15 43209316 DUPLICATION TRUTH_659_fap_33 TRUTH truth 208.0 0 0 132 1247 hg19 15 43341201.0 15.0 43501514.0 0 132 EVALUABLE BAM_REFUTED
659_fap HYOU1 NFRKB chr11 119057147 chr11 129882561 DELETION TRUTH_659_fap_34 TRUTH truth 47.0 0 0 2 1258 hg19 11 118927858.0 11.0 129752456.0 0 2 UNEVALUABLE UNEVALUABLE
659_fap RGS14 CDKN1C chr5 177371117 chr11 2884803 TRANSLOCATION TRUTH_659_fap_35 TRUTH truth 20.0 0 0 2113 1730 hg19 5 176798118.0 11.0 2906033.0 0 1730 EVALUABLE BAM_REFUTED
659_fap ALK intergenic(RPIA,AQP7B) chr2 29223889 chr2 89800290 DUPLICATION TRUTH_659_fap_36 TRUTH truth 505.0 0 0 10519 1 hg19 2 29446755.0 2.0 89839100.0 0 1 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(VPS13D,DHRS3) TP53 chr1 12524914 chr17 7682786 BND CALL_659_bOn_0 FP call 0.0 0 0 13 17 hg19 1 12584956.0 17 7586104.0 0 13 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(USP24,ENSG00000284686) GID4 chr1 55668517 chr17 18066485 BND CALL_659_bOn_1 FP call 0.0001 0 0 26 0 hg19 1 56134190.0 17 17969799.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn NFIA FOXL2NB chr1 61361825 chr3 138949373 BND CALL_659_bOn_2 FP call 0.0008 0 0 9 1141 hg19 1 61827497.0 3 138668215.0 0 9 UNEVALUABLE UNEVALUABLE
659_bOn NEGR1 SV2A chr1 71396062 chr1 149904856 DUP CALL_659_bOn_3 FP call 0.0 0 0 0 1169 hg19 1 71861745.0 1 149876408.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(PLA2G4A,BRINP3) WDFY3 chr1 187992483 chr4 84751659 BND CALL_659_bOn_4 FP call 0.0002 0 0 0 1286 hg19 1 187961614.0 4 85672812.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn TET3 intergenic(TET3,BOLA3) chr2 74107969 chr2 74108654 DUP CALL_659_bOn_5 FP call 0.0 0 0 0 2 hg19 2 74335096.0 2 74335781.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn SCN3A SETD2 chr2 165111531 chr3 47101634 BND CALL_659_bOn_6 FP call 0.0 0 0 34 876 hg19 2 165968041.0 3 47143124.0 0 34 EVALUABLE BAM_REFUTED
659_bOn TTN ZNF385B chr2 178574477 chr2 179858984 DUP CALL_659_bOn_7 FP call 0.0009 0 0 4405 3 hg19 2 179439204.0 2 180723711.0 0 3 UNEVALUABLE UNEVALUABLE
659_bOn DNAH7 NTRK3 chr2 195990776 chr15 88059041 BND CALL_659_bOn_8 FP call 0.0 0 0 3 0 hg19 2 196855500.0 15 88602272.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(ACKR3,COPS8) TSC1 chr2 236861951 chr9 132892107 BND CALL_659_bOn_9 FP call 0.0 0 0 1 0 hg19 2 237770594.0 9 135767494.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(CRBN,SUMF1) BRCA1 chr3 3402214 chr17 43093339 BND CALL_659_bOn_10 FP call 0.0002 0 0 0 8204 hg19 3 3443898.0 17 41245356.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn PPARG intergenic(ZNF706,GRHL2) chr3 12369071 chr8 101213918 BND CALL_659_bOn_11 FP call 0.0 0 0 0 1 hg19 3 12410570.0 8 102226146.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(OXSM,LRRC3B) SETD2 chr3 26407736 chr3 47101634 DUP CALL_659_bOn_12 FP call 0.0008 0 0 20 876 hg19 3 26449227.0 3 47143124.0 0 20 EVALUABLE BAM_REFUTED
659_bOn intergenic(RBMS3,TGFBR2) ENSG00000267618 chr3 30265564 chr17 35093493 BND CALL_659_bOn_13 FP call 0.0 0 0 1 0 hg19 3 30307055.0 17 33420512.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn MLH1 CNGB3 chr3 37025685 chr8 86725943 BND CALL_659_bOn_14 FP call 0.0 0 0 5828 164 hg19 3 37067176.0 8 87738171.0 0 164 EVALUABLE BAM_REFUTED
659_bOn SETD2 intergenic(TSN,CNTNAP5) chr3 47101634 chr2 123510188 BND CALL_659_bOn_15 FP call 0.0 0 0 876 0 hg19 3 47143124.0 2 124267764.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn SETD2 intergenic(IFNE,MTAP) chr3 47101634 chr9 21504236 BND CALL_659_bOn_16 FP call 0.0001 0 0 876 2 hg19 3 47143124.0 9 21504235.0 0 2 UNEVALUABLE UNEVALUABLE
659_bOn SETD2 AFF2 chr3 47101634 chrX 148681537 BND CALL_659_bOn_17 FP call 0.0 0 0 876 1 hg19 3 47143124.0 X 147763058.0 0 1 UNEVALUABLE UNEVALUABLE
659_bOn MST1R SLC45A3 chr3 49894742 chr1 205671319 BND CALL_659_bOn_18 FP call 0.0 0 0 879 10 hg19 3 49932175.0 1 205640447.0 0 10 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(EPHA6,ARL6) PRDM8 chr3 97762436 chr4 80202300 BND CALL_659_bOn_19 FP call 0.0002 0 0 1 5456 hg19 3 97481280.0 4 81123454.0 0 1 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(OTOL1,SI) NTRK3 chr3 162485956 chr15 88059041 BND CALL_659_bOn_20 FP call 0.0 0 0 2 0 hg19 3 162203744.0 15 88602272.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(PCDH7,ARAP2) GID4 chr4 35192522 chr17 18066485 BND CALL_659_bOn_21 FP call 0.0003 0 0 0 0 hg19 4 35194144.0 17 17969799.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(GRSF1,MOB1B) GID4 chr4 70867792 chr17 18066485 BND CALL_659_bOn_22 FP call 0.0 0 0 5 0 hg19 4 71733509.0 17 17969799.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn ALB intergenic(BET1,COL1A2) chr4 73409427 chr7 94348372 BND CALL_659_bOn_23 FP call 0.0001 0 0 984 0 hg19 4 74275144.0 7 93977684.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn ARHGAP24 NTRK2 chr4 85649012 chr9 84905306 BND CALL_659_bOn_24 FP call 0.0 0 0 0 1 hg19 4 86570165.0 9 87520221.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn TET2 GSTCD chr4 105146034 chr4 105761985 BND CALL_659_bOn_25 FP call 0.0 0 0 0 1 hg19 4 106067191.0 4 106683142.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(PABPC4L,PCDH18) CEP104 chr4 135842632 chr1 3831138 BND CALL_659_bOn_26 FP call 0.0002 0 0 1 852 hg19 4 136763787.0 1 3747702.0 0 1 UNEVALUABLE UNEVALUABLE
659_bOn HAND2 intergenic(GAREM1,KLHL14) chr4 173529181 chr18 32618291 BND CALL_659_bOn_27 FP call 0.0004 0 0 2255 0 hg19 4 174450332.0 18 30198254.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(AGA,TENM3) TENM3 chr4 181733836 chr4 182324212 BND CALL_659_bOn_28 FP call 0.0002 0 0 1 987 hg19 4 182654989.0 4 183245365.0 0 1 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(DCTD,WWC2) ARHGAP35 chr4 182923301 chr19 47003951 BND CALL_659_bOn_29 FP call 0.0 0 0 5 2 hg19 4 183844454.0 19 47507208.0 0 2 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(SEMA5A,TAS2R1) LAMA3 chr5 9553416 chr18 23763497 BND CALL_659_bOn_30 FP call 0.0048 0 0 0 336 hg19 5 9553528.0 18 21343461.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn GNPDA1 NTRK2 chr5 141991932 chr9 85021747 BND CALL_659_bOn_31 FP call 0.0 0 0 10 2969 hg19 5 141371497.0 9 87636662.0 0 10 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(GLRA1,NMUR2) NMUR2 chr5 152235328 chr5 152404908 DEL CALL_659_bOn_32 FP call 0.0002 0 0 0 3020 hg19 5 151614889.0 5 151784469.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(RNF182,CD83) GID4 chr6 14011645 chr17 18066485 BND CALL_659_bOn_33 FP call 0.0001 0 0 2 0 hg19 6 14011876.0 17 17969799.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn JARID2 FOXL2NB chr6 15433453 chr3 138949373 BND CALL_659_bOn_34 FP call 0.0004 0 0 12 1141 hg19 6 15433684.0 3 138668215.0 0 12 UNEVALUABLE UNEVALUABLE
659_bOn BTBD9 SETD2 chr6 38556507 chr3 47101633 BND CALL_659_bOn_35 FP call 0.0004 0 0 9 876 hg19 6 38524283.0 3 47143123.0 0 9 UNEVALUABLE UNEVALUABLE
659_bOn CCDC170 ESR1 chr6 151596446 chr6 152079119 DEL CALL_659_bOn_36 FP call 0.0007 0 0 1861 1 hg19 6 151917581.0 6 152400254.0 0 1 UNEVALUABLE UNEVALUABLE
659_bOn QKI intergenic(RAB38,CTSC) chr6 163577330 chr11 88225666 BND CALL_659_bOn_37 FP call 0.0 0 0 1 2 hg19 6 163998362.0 11 87958834.0 0 1 UNEVALUABLE UNEVALUABLE
659_bOn SFRP4 EGFR chr7 37965456 chr7 55207806 BND CALL_659_bOn_38 FP call 0.0 0 0 0 1252 hg19 7 38005058.0 7 55275499.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(CDC14C,VWC2) IKZF1 chr7 49171629 chr7 50403620 DEL CALL_659_bOn_39 FP call 0.0 0 0 0 0 hg19 7 49211225.0 7 50471318.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn CD36 GREM1 chr7 80597590 chr15 32740164 BND CALL_659_bOn_40 FP call 0.0 0 0 2 0 hg19 7 80226906.0 15 33032365.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn SEMA3E intergenic(CST2,CST5) chr7 83394299 chr20 23860093 BND CALL_659_bOn_41 FP call 0.0001 0 0 715 0 hg19 7 83023615.0 20 23840730.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn KCND2 NTRK3 chr7 120523705 chr15 88059050 BND CALL_659_bOn_42 FP call 0.0001 0 0 0 0 hg19 7 120163759.0 15 88602281.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(KMT2C,XRCC2) SETD2 chr7 152612299 chr3 47101633 BND CALL_659_bOn_43 FP call 0.0001 0 0 2 876 hg19 7 152309384.0 3 47143123.0 0 2 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(KCNU1,ZNF703) ETV1 chr8 37604125 chr7 13950370 BND CALL_659_bOn_44 FP call 0.0 0 0 2 12407 hg19 8 37461643.0 7 13989995.0 0 2 UNEVALUABLE UNEVALUABLE
659_bOn NSD3 RERG chr8 38299451 chr12 15113575 BND CALL_659_bOn_45 FP call 0.0001 0 0 2418 0 hg19 8 38156969.0 12 15266509.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn CHRNA6 FGFR3 chr8 42760197 chr4 1807415 BND CALL_659_bOn_46 FP call 0.0 0 0 3 18713 hg19 8 42615340.0 4 1809142.0 0 3 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(YTHDF3,BHLHE22) GID4 chr8 64363263 chr17 18066485 BND CALL_659_bOn_47 FP call 0.0 0 0 1 0 hg19 8 65275820.0 17 17969799.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn ERMP1 GID4 chr9 5861171 chr17 18066485 BND CALL_659_bOn_48 FP call 0.0 0 0 16 0 hg19 9 5861171.0 17 17969799.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn KIAA2026 KDM4C chr9 5921498 chr9 6908342 DUP CALL_659_bOn_49 FP call 0.0001 0 0 3356 0 hg19 9 5921498.0 9 6908342.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn NTRK2 intergenic(ASCL4,WSCD2) chr9 84908042 chr12 107793864 BND CALL_659_bOn_50 FP call 0.0 0 0 1 15 hg19 9 87522957.0 12 108187641.0 0 1 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(PHF2,BARX1) GSK3B chr9 93711937 chr3 119824352 BND CALL_659_bOn_51 FP call 0.0 0 0 2 1 hg19 9 96474219.0 3 119543199.0 0 1 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(TNC,PAPPA) SHQ1 chr9 116133970 chr3 72753121 BND CALL_659_bOn_52 FP call 0.0007 0 0 6 2676 hg19 9 118896249.0 3 72802272.0 0 6 UNEVALUABLE UNEVALUABLE
659_bOn SCAI GID4 chr9 125125950 chr17 18066485 BND CALL_659_bOn_53 FP call 0.0 0 0 7 0 hg19 9 127888229.0 17 17969799.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn PIP4K2A RALYL chr10 22609676 chr8 84917650 BND CALL_659_bOn_54 FP call 0.0011 0 0 296 1 hg19 10 22898605.0 8 85829885.0 0 1 UNEVALUABLE UNEVALUABLE
659_bOn UBTD1 GID4 chr10 97545388 chr17 18066485 BND CALL_659_bOn_55 FP call 0.0 0 0 29 0 hg19 10 99305145.0 17 17969799.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn HIF1AN ASXL2 chr10 100550846 chr2 25768832 BND CALL_659_bOn_56 FP call 0.0 0 0 2 1233 hg19 10 102310603.0 2 25991701.0 0 2 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(PDHX,CD44) GID4 chr11 35127872 chr17 18066485 BND CALL_659_bOn_57 FP call 0.0001 0 0 5 0 hg19 11 35149419.0 17 17969799.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn DUSP16 GABRA3 chr12 12538420 chrX 152255899 BND CALL_659_bOn_58 FP call 0.0001 0 0 1 441 hg19 12 12691354.0 X 151424371.0 0 1 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(MSRB3,HMGA2) SETD2 chr12 65548730 chr3 47101634 BND CALL_659_bOn_59 FP call 0.0002 0 0 3 876 hg19 12 65942510.0 3 47143124.0 0 3 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(TMEM132B,TMEM132C) GID4 chr12 126514152 chr17 18066484 BND CALL_659_bOn_60 FP call 0.0004 0 0 10 0 hg19 12 126998698.0 17 17969798.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(OLFM4,PRR20A) PPARG chr13 53629533 chr3 12330348 BND CALL_659_bOn_61 FP call 0.0 0 0 7 2 hg19 13 54203668.0 3 12371847.0 0 2 UNEVALUABLE UNEVALUABLE
659_bOn PPP2R5E NTRK3 chr14 63407393 chr15 88097129 BND CALL_659_bOn_62 FP call 0.0 0 0 0 0 hg19 14 63874111.0 15 88640360.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn MYEF2 GID4 chr15 48160523 chr17 18066485 BND CALL_659_bOn_63 FP call 0.0 0 0 20 0 hg19 15 48452720.0 17 17969799.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn FBN1 PRKCB chr15 48468099 chr16 23962477 BND CALL_659_bOn_64 FP call 0.0001 0 0 1458 3 hg19 15 48760296.0 16 23973798.0 0 3 UNEVALUABLE UNEVALUABLE
659_bOn AP4E1 CYP19A1 chr15 50959544 chr15 51242986 DEL CALL_659_bOn_65 FP call 0.0 0 0 8 374 hg19 15 51251741.0 15 51535183.0 0 8 UNEVALUABLE UNEVALUABLE
659_bOn ALDH1A2 NTRK3 chr15 58221261 chr15 88059049 DEL CALL_659_bOn_66 FP call 0.0 0 0 2 0 hg19 15 58513460.0 15 88602280.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn NTRK3 intergenic(MCTP2,NR2F2) chr15 88001533 chr15 94606180 DUP CALL_659_bOn_67 FP call 0.0 0 0 0 1 hg19 15 88544764.0 15 95149409.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn NTRK3 XRCC4 chr15 88059041 chr5 83118078 BND CALL_659_bOn_68 FP call 0.0 0 0 0 12 hg19 15 88602272.0 5 82413897.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(ISG20,ACAN) PTPRT chr15 88780447 chr20 42885844 BND CALL_659_bOn_69 FP call 0.0 0 0 1 1094 hg19 15 89323678.0 20 41514484.0 0 1 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(CDH8,CDH11) ENSG00000285827 chr16 63180059 chr11 118482080 BND CALL_659_bOn_70 FP call 0.0 0 0 15 13671 hg19 16 63213963.0 11 118352795.0 0 15 UNEVALUABLE UNEVALUABLE
659_bOn CYB5B ZC3H18 chr16 69424762 chr16 88616811 DEL CALL_659_bOn_71 FP call 0.0005 0 0 1427 0 hg19 16 69458665.0 16 88683219.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(MAF,DYNLRB2) GID4 chr16 79918728 chr17 18066485 BND CALL_659_bOn_72 FP call 0.0 0 0 4 0 hg19 16 79952625.0 17 17969799.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn ZCCHC14 EWSR1 chr16 87426333 chr22 29286774 BND CALL_659_bOn_73 FP call 0.0 0 0 1 2872 hg19 16 87459939.0 22 29682763.0 0 1 UNEVALUABLE UNEVALUABLE
659_bOn FLCN XPA chr17 17212437 chr9 97686726 BND CALL_659_bOn_74 FP call 0.0 0 0 35 786 hg19 17 17115751.0 9 100449008.0 0 35 EVALUABLE BAM_REFUTED
659_bOn GNA13 intergenic(CENPH,MRPS36) chr17 65010504 chr5 69216670 BND CALL_659_bOn_75 FP call 0.0 0 0 2 8 hg19 17 63006622.0 5 68512497.0 0 2 UNEVALUABLE UNEVALUABLE
659_bOn EPB41L3 NTRK2 chr18 5529929 chr9 84905306 BND CALL_659_bOn_76 FP call 0.0 0 0 1 1 hg19 18 5529928.0 9 87520221.0 0 1 UNEVALUABLE UNEVALUABLE
659_bOn DTNA CR1 chr18 34877783 chr1 207498972 BND CALL_659_bOn_77 FP call 0.0001 0 0 563 5 hg19 18 32457747.0 1 207672317.0 0 5 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(PIK3C3,RIT2) RUNX1 chr18 42357976 chr21 34789622 BND CALL_659_bOn_78 FP call 0.0 0 0 0 1 hg19 18 39937941.0 21 36161919.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(PLAUR,IRGC) NBEAL1 chr19 43693225 chr2 203190298 BND CALL_659_bOn_79 FP call 0.0 0 0 23 1247 hg19 19 44197377.0 2 204055021.0 0 23 EVALUABLE BAM_REFUTED
659_bOn intergenic(LRRN4,FERMT1) IGLL5 chr20 6058617 chr22 22893895 BND CALL_659_bOn_80 FP call 0.0 0 0 2 416 hg19 20 6039263.0 22 23236075.0 0 2 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(CRYBB2,GRK3) BCAS3 chr22 25351174 chr17 61037981 BND CALL_659_bOn_81 FP call 0.0001 0 0 374 987 hg19 22 25747141.0 17 59115342.0 0 374 EVALUABLE BAM_REFUTED
659_bOn PITPNB intergenic(DHX35,MAFB) chr22 27911044 chr20 39340755 BND CALL_659_bOn_82 FP call 0.0001 0 0 569 3 hg19 22 28307032.0 20 37969398.0 0 3 UNEVALUABLE UNEVALUABLE
659_bOn NF2 intergenic(PLXNA2,CAMK1G) chr22 29658694 chr1 209478239 BND CALL_659_bOn_83 FP call 0.0002 0 0 1207 2 hg19 22 30054683.0 1 209651584.0 0 2 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(CBX7,PDGFB) SOX2 chr22 39189342 chr3 181713561 BND CALL_659_bOn_84 FP call 0.0 0 0 5 5066 hg19 22 39585347.0 3 181431349.0 0 5 UNEVALUABLE UNEVALUABLE
659_bOn ARHGAP6 GID4 chrX 11450204 chr17 18066485 BND CALL_659_bOn_85 FP call 0.0002 0 0 2 0 hg19 X 11468324.0 17 17969799.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn DDX3X KCNB1 chrX 41338315 chr20 49390425 BND CALL_659_bOn_86 FP call 0.0 0 0 18 0 hg19 X 41197568.0 20 48006962.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(ZXDA,SPIN4) WT1 chrX 57914423 chr11 32388037 BND CALL_659_bOn_87 FP call 0.0 0 0 5 4 hg19 X 57940857.0 11 32409583.0 0 4 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(FAM133A,DIAPH2) NTRK2 chrX 95565371 chr9 84905306 BND CALL_659_bOn_88 FP call 0.0 0 0 2 1 hg19 X 94820370.0 9 87520221.0 0 1 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(ENOX2,ARHGAP36) KICS2 chrX 131043085 chr12 64215910 BND CALL_659_bOn_89 FP call 0.0001 0 0 0 1349 hg19 X 130177059.0 12 64609690.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(SPANXN4,SPANXN3) FOXL2NB chrX 143238855 chr3 138949373 BND CALL_659_bOn_90 FP call 0.0112 0 0 0 1141 hg19 X 142326641.0 3 138668215.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(LRP1B,KYNU) NEUROD6 chr2 142160643 chr7 31339148 TRANSLOCATION TRUTH_659_bOn_91 TRUTH truth 25.0 0 0 1 2593 hg19 2 142918212.0 7 31378762.0 0 1 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(KCNH7,FIGN) TTBK2 chr2 163448735 chr15 42878556 TRANSLOCATION TRUTH_659_bOn_92 TRUTH truth 26.0 0 0 2 2271 hg19 2 164305245.0 15 43170754.0 0 2 UNEVALUABLE UNEVALUABLE
659_bOn CCNYL1 ST18 chr2 207751039 chr8 52389023 TRANSLOCATION TRUTH_659_bOn_93 TRUTH truth 29.0 0 0 668 0 hg19 2 208615763.0 8 53301583.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn intergenic(DPPA4,NECTIN3) ENSG00000259060 chr3 109768906 chr14 20584409 TRANSLOCATION TRUTH_659_bOn_94 TRUTH truth 25.0 0 0 1 2458 hg19 3 109487753.0 14 21052568.0 0 1 UNEVALUABLE UNEVALUABLE
659_bOn RAD21 MYO16 chr8 116852643 chr13 109065896 TRANSLOCATION TRUTH_659_bOn_95 TRUTH truth 38.0 0 0 3551 0 hg19 8 117864882.0 13 109718244.0 0 0 UNEVALUABLE UNEVALUABLE
659_bOn KDM4C OTOGL chr9 7102336 chr12 80219866 TRANSLOCATION TRUTH_659_bOn_96 TRUTH truth 25.0 0 0 1 474 hg19 9 7102336.0 12 80613646.0 0 1 UNEVALUABLE UNEVALUABLE
659_bOn NPAP1 PIGS chr15 24680075 chr17 28554354 TRANSLOCATION TRUTH_659_bOn_97 TRUTH truth 34.0 0 0 24 2387 hg19 15 24925222.0 17 26881372.0 0 24 EVALUABLE BAM_REFUTED
659_bOn ARHGAP28 EWSR1 chr18 6900299 chr22 29292672 TRANSLOCATION TRUTH_659_bOn_98 TRUTH truth 45.0 0 0 2 9412 hg19 18 6900298.0 22 29688661.0 0 2 UNEVALUABLE UNEVALUABLE
659_bnZ DNMT3A BIRC6 chr2 25229291 chr2 32599664 DUP CALL_659_bnZ_0 FP call 0.1929 0 0 0 766 hg19 2.0 25452160.0 2.0 32824731.0 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ intergenic(KCNMB3,ZNF639) PLD2 chr3 179311223 chr17 4809204 BND CALL_659_bnZ_1 FP call 0.9011 0 0 0 1398 hg19 3.0 179029011.0 17.0 4712499.0 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ intergenic(HS3ST1,RAB28) FRAS1 chr4 12719960 chr4 78539360 DUP CALL_659_bnZ_2 TP call 0.6853 0 0 0 630 hg19 4.0 12721584.0 4.0 79460514.0 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ ARHGAP24 CXCL5 chr4 85975754 chr4 73998544 BND CALL_659_bnZ_3 TP_DUP call 0.844 0 0 2 1999 hg19 4.0 86896907.0 4.0 74864261.0 0 2 UNEVALUABLE UNEVALUABLE
659_bnZ SLC39A8 CENPE chr4 102402928 chr4 103158833 BND CALL_659_bnZ_4 TP call 0.0928 0 0 5 2320 hg19 4.0 103324085.0 4.0 104079990.0 0 5 UNEVALUABLE UNEVALUABLE
659_bnZ intergenic(CXXC4,TET2) CLCN3 chr4 105082177 chr4 169707260 BND CALL_659_bnZ_5 FP call 0.8333 0 0 1 1099 hg19 4.0 106003334.0 4.0 170628411.0 0 1 UNEVALUABLE UNEVALUABLE
659_bnZ intergenic(PITX2,FAM241A) TIFA chr4 111087139 chr4 112278357 BND CALL_659_bnZ_6 TP call 0.9548 0 0 0 2276 hg19 4.0 112008295.0 4.0 113199513.0 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ MAD2L1 intergenic(NDST4,TRAM1L1) chr4 120062016 chr4 116522803 BND CALL_659_bnZ_7 TP_DUP call 0.1103 0 0 491 0 hg19 4.0 120983171.0 4.0 117443959.0 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ HLA-A intergenic(MICA,MICB) chr6 29943852 chr6 31462499 BND CALL_659_bnZ_8 FP call 0.0001 0 0 6982 781 hg19 6.0 29911629.0 6.0 31430276.0 0 781 EVALUABLE BAM_REFUTED
659_bnZ KLHL32 EMX2 chr6 96951575 chr10 117543621 BND CALL_659_bnZ_9 TP call 0.9076 0 0 0 2956 hg19 6.0 97399451.0 10.0 119303132.0 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ intergenic(CENPW,RSPO3) PTPRK chr6 126612855 chr6 127983299 BND CALL_659_bnZ_10 TP call 0.1498 0 0 5 1523 hg19 6.0 126934001.0 6.0 128304444.0 0 5 UNEVALUABLE UNEVALUABLE
659_bnZ EZR PDE10A chr6 158785460 chr6 165507807 DEL CALL_659_bnZ_11 TP call 0.9819 0 0 1340 0 hg19 6.0 159206492.0 6.0 165921295.0 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ intergenic(QKI,C6orf118) HACE1 chr6 164780061 chr6 104849148 BND CALL_659_bnZ_12 FP call 0.0375 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_bnZ intergenic(DACT2,SMOC2) ERMARD chr6 168390124 chr6 169769695 BND CALL_659_bnZ_13 TP call 0.9996 0 0 0 868 hg19 6.0 168790804.0 6.0 170169791.0 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ ERMARD intergenic(ENSG00000284209,SHCBP1) chr6 169759013 chr16 35661147 BND CALL_659_bnZ_14 TP call 0.9947 0 0 543 2 hg19 6.0 170159109.0 16.0 34895518.0 0 2 UNEVALUABLE UNEVALUABLE
659_bnZ intergenic(CNTNAP3B,SPATA31A6) REL chr9 42171886 chr2 60894477 BND CALL_659_bnZ_15 FP call 0.1177 0 0 0 1676 hg19 9.0 40688520.0 2.0 61121612.0 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ intergenic(TNFSF13B,MYO16) BPIFA1 chr13 108507801 chr20 33240348 BND CALL_659_bnZ_16 TP call 0.7443 0 0 0 1761 hg19 13.0 109160149.0 20.0 31828154.0 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ DHRS4 DHRS4L2 chr14 23959961 chr14 23994993 DUP CALL_659_bnZ_17 FP call 0.0001 0 0 619 1062 hg19 14.0 24429170.0 14.0 24464202.0 0 619 EVALUABLE BAM_REFUTED
659_bnZ intergenic(OR1P1,OR1A2) FAM13A chr17 3172223 chr4 88938118 BND CALL_659_bnZ_18 FP call 0.5766 0 0 0 581 hg19 17.0 3075517.0 4.0 89859269.0 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ LRRC37A3 IKZF3 chr17 64901568 chr17 39758515 BND CALL_659_bnZ_19 FP call 0.0611 0 0 0 3 hg19 17.0 62897686.0 17.0 37914768.0 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ PTGR3 intergenic(ZNF516,ZNF236) chr18 75201482 chr18 76633692 BND CALL_659_bnZ_20 TP call 0.0748 0 0 2197 4 hg19 18.0 72913437.0 18.0 74345649.0 0 4 UNEVALUABLE UNEVALUABLE
659_bnZ CDK5RAP1 TOX2 chr20 33401510 chr20 43918875 DEL CALL_659_bnZ_21 TP call 0.9652 0 0 823 0 hg19 20.0 31989316.0 20.0 42547515.0 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ intergenic(DHX35,MAFB) PTPRT chr20 39904965 chr20 42678060 DUP CALL_659_bnZ_22 FP call 0.0 0 0 0 1866 hg19 20.0 38533607.0 20.0 41306700.0 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ PTPRT LAMA5 chr20 42677896 chr20 62364345 DEL CALL_659_bnZ_23 TP call 0.9948 0 0 1863 2 hg19 20.0 41306536.0 20.0 60939401.0 0 2 UNEVALUABLE UNEVALUABLE
659_bnZ PTPRT SGK2 chr20 42677900 chr20 43582767 DEL CALL_659_bnZ_24 TP call 0.9761 0 0 1863 637 hg19 20.0 41306540.0 20.0 42211407.0 0 637 EVALUABLE BAM_REFUTED
659_bnZ PTPRT ZNFX1 chr20 42678034 chr20 49275309 DEL CALL_659_bnZ_25 FP call 0.0 0 0 1867 465 hg19 20.0 41306674.0 20.0 47891846.0 0 465 EVALUABLE BAM_REFUTED
659_bnZ PTPRT PTPN1 chr20 42680036 chr20 50583123 DEL CALL_659_bnZ_26 FP call 0.7888 0 0 0 460 hg19 20.0 41308676.0 20.0 49199660.0 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ PTPN1 intergenic(ZFP64,TSHZ2) chr20 50583151 chr20 52466267 DUP CALL_659_bnZ_27 FP call 0.0118 0 0 454 0 hg19 20.0 49199688.0 20.0 51082806.0 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ intergenic(KCNG1,NFATC2) SALL4 chr20 51072746 chr20 51790355 DUP CALL_659_bnZ_28 FP call 0.0238 0 0 0 3768 hg19 20.0 49689283.0 20.0 50406894.0 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ intergenic(KCNG1,NFATC2) LAMA5 chr20 51072891 chr20 62353227 BND CALL_659_bnZ_29 FP call 0.9789 0 0 0 474 hg19 20.0 49689428.0 20.0 60928283.0 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ LAMA5 SALL4 chr20 62353383 chr20 51790306 BND CALL_659_bnZ_30 TP_DUP call 0.997 0 0 472 3607 hg19 20.0 60928439.0 20.0 50406845.0 0 472 EVALUABLE BAM_REFUTED
659_bnZ intergenic(.,.) PTPRT chr9_KI270720v1_random 21931 chr20 42677888 BND CALL_659_bnZ_31 FP call 0.0003 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_bnZ KLHL32 EMX2 chr6 96951574 chr10 117543620 TRANSLOCATION TRUTH_659_bnZ_32 TRUTH truth 93.0 0 0 0 2956 hg19 6.0 97399450.0 10.0 119303131.0 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ SALL4 LAMA5 chr20 51790304 chr20 62353383 INVERSION TRUTH_659_bnZ_33 TRUTH truth 128.0 0 0 3598 472 hg19 20.0 50406843.0 20.0 60928439.0 0 472 EVALUABLE BAM_REFUTED
659_bnZ CXCL5 ARHGAP24 chr4 73998541 chr4 85975755 INVERSION TRUTH_659_bnZ_34 TRUTH truth 93.0 0 0 2003 2 hg19 4.0 74864258.0 4.0 86896908.0 0 2 UNEVALUABLE UNEVALUABLE
659_bnZ intergenic(NDST4,TRAM1L1) MAD2L1 chr4 116522801 chr4 120062016 INVERSION TRUTH_659_bnZ_35 TRUTH truth 47.0 0 0 0 491 hg19 4.0 117443957.0 4.0 120983171.0 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ CDK5RAP1 TOX2 chr20 33401509 chr20 43918874 DELETION TRUTH_659_bnZ_36 TRUTH truth 30.0 0 0 823 0 hg19 20.0 31989315.0 20.0 42547514.0 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ intergenic(PITX2,FAM241A) TIFA chr4 111087137 chr4 112278355 INVERSION TRUTH_659_bnZ_37 TRUTH truth 35.0 0 0 0 2278 hg19 4.0 112008293.0 4.0 113199511.0 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ intergenic(CENPW,RSPO3) PTPRK chr6 126612854 chr6 127983298 INVERSION TRUTH_659_bnZ_38 TRUTH truth 52.0 0 0 5 1524 hg19 6.0 126934000.0 6.0 128304443.0 0 5 UNEVALUABLE UNEVALUABLE
659_bnZ PTPRT SGK2 chr20 42678089 chr20 43583551 DUPLICATION TRUTH_659_bnZ_39 TRUTH truth 93.0 0 0 1866 1563 hg19 20.0 41306729.0 20.0 42212191.0 0 1563 EVALUABLE BAM_REFUTED
659_bnZ REL intergenic(SPATA31A5,SPATA31A7) chr2 60894474 chr9 61178270 TRANSLOCATION TRUTH_659_bnZ_40 TRUTH truth 44.0 0 0 1676 6 hg19 2.0 61121609.0 9.0 43642498.0 0 6 UNEVALUABLE UNEVALUABLE
659_bnZ intergenic(DACT2,SMOC2) ERMARD chr6 168390123 chr6 169769694 INVERSION TRUTH_659_bnZ_41 TRUTH truth 150.0 0 0 0 868 hg19 6.0 168790803.0 6.0 170169790.0 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ intergenic(HS3ST1,RAB28) FRAS1 chr4 12719959 chr4 78539359 DUPLICATION TRUTH_659_bnZ_42 TRUTH truth 31.0 0 0 0 630 hg19 4.0 12721583.0 4.0 79460513.0 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ SLC39A8 CENPE chr4 102402927 chr4 103158832 INVERSION TRUTH_659_bnZ_43 TRUTH truth 21.0 0 0 5 2319 hg19 4.0 103324084.0 4.0 104079989.0 0 5 UNEVALUABLE UNEVALUABLE
659_bnZ intergenic(TNFSF13B,MYO16) BPIFA1 chr13 108507800 chr20 33240347 TRANSLOCATION TRUTH_659_bnZ_44 TRUTH truth 48.0 0 0 0 1762 hg19 13.0 109160148.0 20.0 31828153.0 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ PTGR3 intergenic(ZNF516,ZNF236) chr18 75201481 chr18 76633691 INVERSION TRUTH_659_bnZ_45 TRUTH truth 134.0 0 0 2194 4 hg19 18.0 72913436.0 18.0 74345648.0 0 4 UNEVALUABLE UNEVALUABLE
659_bnZ EZR PDE10A chr6 158785459 chr6 165507806 DELETION TRUTH_659_bnZ_46 TRUTH truth 97.0 0 0 1340 0 hg19 6.0 159206491.0 6.0 165921294.0 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ PTPRT LAMA5 chr20 42677895 chr20 62364344 DELETION TRUTH_659_bnZ_47 TRUTH truth 46.0 0 0 1863 2 hg19 20.0 41306535.0 20.0 60939400.0 0 2 UNEVALUABLE UNEVALUABLE
659_bnZ intergenic(IL15RA,IL2RA) SFMBT2 chr10 5988494 chr10 7205903 DELETION TRUTH_659_bnZ_48 TRUTH truth 79.0 0 0 4 3514 hg19 10.0 6030457.0 10.0 7247865.0 0 4 UNEVALUABLE UNEVALUABLE
659_bnZ ERMARD intergenic(ENSG00000284209,SHCBP1) chr6 169759012 chr16 35661144 TRANSLOCATION TRUTH_659_bnZ_49 TRUTH truth 80.0 0 0 543 2 hg19 6.0 170159108.0 16.0 34895515.0 0 2 UNEVALUABLE UNEVALUABLE
659_c6S FHAD1 ENSG00000271741 chr1 15399293 chr1 34992281 DUP CALL_659_c6S_0 TP call 0.2867 0 0 11 1252 hg19 1 15725789.0 1 35457882.0 0 11 UNEVALUABLE UNEVALUABLE
659_c6S LUZP1 KIAA2013 chr1 23111552 chr1 11922743 BND CALL_659_c6S_1 FP call 0.422 0 0 3 3998 hg19 1 23438045.0 1 11982800.0 0 3 UNEVALUABLE UNEVALUABLE
659_c6S intergenic(PTPRU,ENSG00000289710) CLPB chr1 29866661 chr11 72380326 BND CALL_659_c6S_2 TP call 0.9969 0 0 0 517 hg19 1 30339508.0 11 72091370.0 0 0 UNEVALUABLE UNEVALUABLE
659_c6S PUM1 ALG8 chr1 30941554 chr11 78113916 BND CALL_659_c6S_3 FP call 0.0 0 0 1513 1622 hg19 1 31414401.0 11 77824962.0 0 1513 EVALUABLE BAM_REFUTED
659_c6S SMIM12 TENM4 chr1 34792929 chr11 78812144 BND CALL_659_c6S_4 FP call 0.0636 0 0 0 2014 hg19 1 35258530.0 11 78523189.0 0 0 UNEVALUABLE UNEVALUABLE
659_c6S RAP1A CSF1 chr1 111632335 chr1 109930110 BND CALL_659_c6S_5 FP call 0.057 0 0 3 1 hg19 1 112174957.0 1 110472732.0 0 1 UNEVALUABLE UNEVALUABLE
659_c6S intergenic(NBPF11,PPIAL4G) TAS2R20 chr1 148309265 chr12 10996974 BND CALL_659_c6S_6 TP call 0.6197 0 0 1 3118 hg19 1 147781373.0 12 11149573.0 0 1 UNEVALUABLE UNEVALUABLE
659_c6S GOLPH3L JRKL chr1 150662920 chr11 96391217 BND CALL_659_c6S_7 FP call 0.0001 0 0 17 2237 hg19 1 150635396.0 11 96124381.0 0 17 UNEVALUABLE UNEVALUABLE
659_c6S NUP210L NTRK1 chr1 154114984 chr1 156875596 DEL CALL_659_c6S_8 TP call 0.5833 0 0 0 15702 hg19 1 154087460.0 1 156845388.0 0 0 UNEVALUABLE UNEVALUABLE
659_c6S intergenic(OR10J3,OR10J4) OR10J4 chr1 159362650 chr1 159432518 BND CALL_659_c6S_9 FP call 0.9875 0 0 1 2 hg19 1 159332440.0 1 159402308.0 0 1 UNEVALUABLE UNEVALUABLE
659_c6S intergenic(C1orf115,MTARC2) ETV6 chr1 220739801 chr12 11808097 BND CALL_659_c6S_10 FP call 0.0 0 0 2 2 hg19 1 220913143.0 12 11961031.0 0 2 UNEVALUABLE UNEVALUABLE
659_c6S intergenic(PTPRD,TYRP1) MLLT3 chr9 11916404 chr9 20413814 DEL CALL_659_c6S_11 FP call 0.0254 0 0 1 2585 hg19 9 11916404.0 9 20413812.0 0 1 UNEVALUABLE UNEVALUABLE
659_c6S FRMD3 HNRNPK chr9 83372886 chr9 83978241 DEL CALL_659_c6S_12 FP call 0.0 0 0 403 904 hg19 9 85987801.0 9 86593156.0 0 403 EVALUABLE BAM_REFUTED
659_c6S NTRK2 TBC1D32 chr9 84910241 chr6 121106594 BND CALL_659_c6S_13 FP call 0.5812 0 0 0 479 hg19 9 87525156.0 6 121427740.0 0 0 UNEVALUABLE UNEVALUABLE
659_c6S intergenic(CYLC2,SMC2) CAMSAP1 chr9 103885162 chr9 135818454 BND CALL_659_c6S_14 TP call 0.135 0 0 1 2659 hg19 9 106647443.0 9 138710300.0 0 1 UNEVALUABLE UNEVALUABLE
659_c6S intergenic(TMEM38B,ZNF462) CAMSAP1 chr9 105930338 chr9 135822614 DEL CALL_659_c6S_15 TP call 0.9577 0 0 1 5388 hg19 9 108692619.0 9 138714460.0 0 1 UNEVALUABLE UNEVALUABLE
659_c6S KCNT1 CAMSAP1 chr9 135775979 chr9 135822224 DUP CALL_659_c6S_16 TP call 0.9794 0 0 149 5534 hg19 9 138667825.0 9 138714070.0 0 149 EVALUABLE BAM_REFUTED
659_c6S PC NARS2 chr11 66926984 chr11 78493100 BND CALL_659_c6S_17 FP call 0.0005 0 0 10 726 hg19 11 66694455.0 11 78204146.0 0 10 UNEVALUABLE UNEVALUABLE
659_c6S PPP1CA intergenic(PGM2L1,KCNE3) chr11 67419787 chr11 74398780 DUP CALL_659_c6S_18 FP call 0.0241 0 0 2439 34 hg19 11 67187258.0 11 74109825.0 0 34 EVALUABLE BAM_REFUTED
659_c6S ACY3 ARRB1 chr11 67642840 chr11 75299986 DEL CALL_659_c6S_19 FP call 0.0066 0 0 1292 24 hg19 11 67410311.0 11 75011030.0 0 24 EVALUABLE BAM_REFUTED
659_c6S intergenic(KMT5B,C11orf24) AGO1 chr11 68253955 chr1 35893806 BND CALL_659_c6S_20 TP_DUP call 0.9652 0 0 6 2895 hg19 11 68021423.0 1 36359407.0 0 6 UNEVALUABLE UNEVALUABLE
659_c6S MYO7A CSMD2 chr11 77145988 chr1 33524890 BND CALL_659_c6S_21 FP call 0.0006 0 0 1 1088 hg19 11 76857034.0 1 33990490.0 0 1 UNEVALUABLE UNEVALUABLE
659_c6S intergenic(JRKL,CNTN5) MYO7A chr11 96530207 chr11 77208446 BND CALL_659_c6S_22 FP call 0.9983 0 0 4 1006 hg19 11 96263371.0 11 76919491.0 0 4 UNEVALUABLE UNEVALUABLE
659_c6S intergenic(JRKL,CNTN5) YAP1 chr11 97746073 chr11 102231575 BND CALL_659_c6S_23 FP call 0.0059 0 0 3 3 hg19 11 97617073.0 11 102102306.0 0 3 UNEVALUABLE UNEVALUABLE
659_c6S CNTN5 PGR chr11 99701010 chr11 101038972 BND CALL_659_c6S_24 FP call 0.0 0 0 1 623 hg19 11 99571741.0 11 100909703.0 0 1 UNEVALUABLE UNEVALUABLE
659_c6S CNTN5 SYK chr11 100148053 chr9 90898052 BND CALL_659_c6S_25 FP call 0.8726 0 0 0 5 hg19 11 100018785.0 9 93660334.0 0 0 UNEVALUABLE UNEVALUABLE
659_c6S intergenic(CNTN5,ARHGAP42) MAP6 chr11 100562502 chr11 75605876 BND CALL_659_c6S_26 FP call 0.0002 0 0 0 2981 hg19 11 100433233.0 11 75316921.0 0 0 UNEVALUABLE UNEVALUABLE
659_c6S intergenic(MMP20,MMP27) NTRK2 chr11 102654382 chr9 84890712 BND CALL_659_c6S_27 FP call 0.5437 0 0 0 3 hg19 11 102525113.0 9 87505627.0 0 0 UNEVALUABLE UNEVALUABLE
659_c6S DYNC2H1 SDK1 chr11 103153380 chr7 3981911 BND CALL_659_c6S_28 FP call 0.04 0 0 1124 2 hg19 11 103024109.0 7 4021543.0 0 2 UNEVALUABLE UNEVALUABLE
659_c6S intergenic(CASP12,CASP4) CCPG1 chr11 104940293 chr15 55359764 BND CALL_659_c6S_29 FP call 0.0002 0 0 0 2890 hg19 11 104811020.0 15 55651962.0 0 0 UNEVALUABLE UNEVALUABLE
659_c6S TMTC2 MYRFL chr12 82838834 chr12 69910844 BND CALL_659_c6S_30 TP_DUP call 0.9354 0 0 1 486 hg19 12 83232613.0 12 70304624.0 0 1 UNEVALUABLE UNEVALUABLE
659_c6S MGAT4C RCN2 chr12 86331073 chr15 76932428 BND CALL_659_c6S_31 TP call 0.9912 0 0 0 1251 hg19 12 86724851.0 15 77224769.0 0 0 UNEVALUABLE UNEVALUABLE
659_c6S TLN2 RIIAD1 chr15 62499545 chr1 151727602 BND CALL_659_c6S_32 FP call 0.0023 0 0 3 326 hg19 15 62791744.0 1 151700078.0 0 3 UNEVALUABLE UNEVALUABLE
659_c6S SCAMP5 MINAR1 chr15 75012712 chr15 79466331 BND CALL_659_c6S_33 FP call 0.0003 0 0 717 0 hg19 15 75305053.0 15 79758673.0 0 0 UNEVALUABLE UNEVALUABLE
659_c6S intergenic(MCTP2,NR2F2) PAK1 chr15 94538571 chr11 77336156 BND CALL_659_c6S_34 FP call 0.0 0 0 0 612 hg19 15 95081800.0 11 77047201.0 0 0 UNEVALUABLE UNEVALUABLE
659_c6S intergenic(MCTP2,NR2F2) XRRA1 chr15 95172079 chr11 74843258 BND CALL_659_c6S_35 FP call 0.0 0 0 16 2287 hg19 15 95715308.0 11 74554303.0 0 16 UNEVALUABLE UNEVALUABLE
659_c6S intergenic(.,.) TAS2R20 chr1_KI270706v1_random 60084 chr12 10997700 BND CALL_659_c6S_36 FP call 0.0 0 0 0 3409 hg19 1 143177845.0 12 11150299.0 0 0 UNEVALUABLE UNEVALUABLE
659_c6S intergenic(CYLC2,SMC2) CAMSAP1 chr9 103885160 chr9 135818452 INVERSION TRUTH_659_c6S_37 TRUTH truth 79.0 0 0 1 2651 hg19 9 106647441.0 9 138710298.0 0 1 UNEVALUABLE UNEVALUABLE
659_c6S KCNT1 CAMSAP1 chr9 135775978 chr9 135822223 DUPLICATION TRUTH_659_c6S_38 TRUTH truth 158.0 0 0 151 5533 hg19 9 138667824.0 9 138714069.0 0 151 EVALUABLE BAM_REFUTED
659_c6S MYRFL TMTC2 chr12 69910839 chr12 82838835 INVERSION TRUTH_659_c6S_39 TRUTH truth 79.0 0 0 486 1 hg19 12 70304619.0 12 83232614.0 0 1 UNEVALUABLE UNEVALUABLE
659_c6S FHAD1 ENSG00000271741 chr1 15399292 chr1 34992280 DUPLICATION TRUTH_659_c6S_40 TRUTH truth 98.0 0 0 11 1252 hg19 1 15725788.0 1 35457881.0 0 11 UNEVALUABLE UNEVALUABLE
659_c6S MGAT4C RCN2 chr12 86331072 chr15 76932424 TRANSLOCATION TRUTH_659_c6S_41 TRUTH truth 30.0 0 0 0 1263 hg19 12 86724850.0 15 77224765.0 0 0 UNEVALUABLE UNEVALUABLE
659_c6S intergenic(NBPF11,PPIAL4G) ENSG00000275778 chr1 148309264 chr12 10996973 TRANSLOCATION TRUTH_659_c6S_42 TRUTH truth 46.0 0 0 1 3116 hg19 1 147781372.0 12 11149572.0 0 1 UNEVALUABLE UNEVALUABLE
659_c6S intergenic(PTPRU,ENSG00000289710) CLPB chr1 29866660 chr11 72380325 TRANSLOCATION TRUTH_659_c6S_43 TRUTH truth 59.0 0 0 0 517 hg19 1 30339507.0 11 72091369.0 0 0 UNEVALUABLE UNEVALUABLE
659_c6S intergenic(TMEM38B,ZNF462) CAMSAP1 chr9 105930337 chr9 135822613 DELETION TRUTH_659_c6S_44 TRUTH truth 138.0 0 0 1 5391 hg19 9 108692618.0 9 138714459.0 0 1 UNEVALUABLE UNEVALUABLE
659_c6S AGO1 intergenic(KMT5B,C11orf24) chr1 35893805 chr11 68253954 TRANSLOCATION TRUTH_659_c6S_45 TRUTH truth 42.0 0 0 2895 6 hg19 1 36359406.0 11 68021422.0 0 6 UNEVALUABLE UNEVALUABLE
659_c6S NUP210L NTRK1 chr1 154114983 chr1 156875595 DELETION TRUTH_659_c6S_46 TRUTH truth 1127.0 0 0 0 15711 hg19 1 154087459.0 1 156845387.0 0 0 UNEVALUABLE UNEVALUABLE
659_cAd COMMD1 RAD51B chr2 61996382 chr14 68209310 BND CALL_659_cAd_0 FP call 0.0 0 0 6 0 hg19 2 62223517.0 14 68676027.0 0 0 UNEVALUABLE UNEVALUABLE
659_cAd CERS6 TECTA chr2 168581142 chr11 121166714 BND CALL_659_cAd_1 FP call 0.0008 0 0 11 1118 hg19 2 169437652.0 11 121037423.0 0 11 UNEVALUABLE UNEVALUABLE
659_cAd HLA-B HLA-G chr6 31356216 chr6 29828906 BND CALL_659_cAd_2 FP call 0.0 0 0 7998 2182 hg19 6 31323993.0 6 29796683.0 0 2182 EVALUABLE BAM_REFUTED
659_cAd PTPRK RSPO3 chr6 128415191 chr6 127146521 BND CALL_659_cAd_3 FP call 0.9998 0 0 0 0 hg19 6 128736336.0 6 127467666.0 0 0 UNEVALUABLE UNEVALUABLE
659_cAd KCND2 RELN chr7 120642811 chr7 103553756 BND CALL_659_cAd_4 FP call 0.9492 0 0 9 782 hg19 7 120282865.0 7 103194203.0 0 9 UNEVALUABLE UNEVALUABLE
659_cAd TBC1D2 intergenic(BRINP1,CDK5RAP2) chr9 98244108 chr9 120379478 BND CALL_659_cAd_5 FP call 0.0009 0 0 1005 0 hg19 9 101006390.0 9 123141756.0 0 0 UNEVALUABLE UNEVALUABLE
659_cAd intergenic(ZNF32,CXCL12) PTEN chr10 44213318 chr10 87864533 DEL CALL_659_cAd_6 FP call 0.0 0 0 1 1189 hg19 10 44708766.0 10 89624290.0 0 1 UNEVALUABLE UNEVALUABLE
659_cAd ATAD1 ETV6 chr10 87830902 chr12 11893029 BND CALL_659_cAd_7 FP call 0.0001 0 0 0 0 hg19 10 89590659.0 12 12045963.0 0 0 UNEVALUABLE UNEVALUABLE
659_cAd SLK intergenic(ATP10A,GABRB3) chr10 103967812 chr15 25894422 BND CALL_659_cAd_8 FP call 0.0023 0 0 590 0 hg19 10 105727570.0 15 26139569.0 0 0 UNEVALUABLE UNEVALUABLE
659_cAd TCHP CEP170 chr12 109961375 chr1 243249078 BND CALL_659_cAd_9 FP call 0.001 0 0 424 0 hg19 12 110399180.0 1 243412380.0 0 0 UNEVALUABLE UNEVALUABLE
659_cAd RNMT ZNF74 chr18 13757905 chr22 20405983 BND CALL_659_cAd_10 TP call 0.9961 0 0 1 4927 hg19 18 13757904.0 22 20760273.0 0 1 UNEVALUABLE UNEVALUABLE
659_cAd ZNF540 RSRC2 chr19 37613125 chr12 122514197 BND CALL_659_cAd_11 TP_DUP call 0.9952 0 0 1880 689 hg19 19 38104026.0 12 122998744.0 0 689 EVALUABLE BAM_REFUTED
659_cAd intergenic(CLDN5,SEPTIN5) CLDN5 chr22 19571705 chr22 19523807 BND CALL_659_cAd_12 TP_DUP call 0.9776 0 0 2 2942 hg19 22 19559228.0 22 19511330.0 0 2 UNEVALUABLE UNEVALUABLE
659_cAd TFIP11 MORC1 chr22 26506857 chr3 109109770 BND CALL_659_cAd_13 TP_DUP call 0.9506 0 0 1368 0 hg19 22 26902823.0 3 108828617.0 0 0 UNEVALUABLE UNEVALUABLE
659_cAd CLDN5 intergenic(CLDN5,SEPTIN5) chr22 19523803 chr22 19571705 INVERSION TRUTH_659_cAd_14 TRUTH truth 104.0 0 0 2927 2 hg19 22 19511326.0 22 19559228.0 0 2 UNEVALUABLE UNEVALUABLE
659_cAd RSRC2 ZNF540 chr12 122514196 chr19 37613124 TRANSLOCATION TRUTH_659_cAd_15 TRUTH truth 114.0 0 0 689 1882 hg19 12 122998743.0 19 38104025.0 0 689 EVALUABLE BAM_REFUTED
659_cAd RNMT ZNF74 chr18 13757904 chr22 20405982 TRANSLOCATION TRUTH_659_cAd_16 TRUTH truth 72.0 0 0 1 4924 hg19 18 13757903.0 22 20760272.0 0 1 UNEVALUABLE UNEVALUABLE
659_cAd MORC1 TFIP11 chr3 109109767 chr22 26506856 TRANSLOCATION TRUTH_659_cAd_17 TRUTH truth 32.0 0 0 0 1369 hg19 3 108828614.0 22 26902822.0 0 0 UNEVALUABLE UNEVALUABLE
659_ciZ CAMTA1 FANCA chr1 7171563 chr16 89798543 BND CALL_659_ciZ_0 FP call 0.0 0 0 2 9347 hg19 1 7231623.0 16 89864951.0 0 2 UNEVALUABLE UNEVALUABLE
659_ciZ intergenic(PABPC4,HEYL) NRG1 chr1 39602215 chr8 32653132 BND CALL_659_ciZ_1 FP call 0.0 0 0 6 0 hg19 1 40067887.0 8 32510651.0 0 0 UNEVALUABLE UNEVALUABLE
659_ciZ TMEM269 GATAD2B chr1 42794604 chr1 153815377 DEL CALL_659_ciZ_2 FP call 0.039 0 0 745 10 hg19 1 43260275.0 1 153787853.0 0 10 UNEVALUABLE UNEVALUABLE
659_ciZ DAB1 INSR chr1 58241266 chr19 7114183 BND CALL_659_ciZ_3 FP call 0.0 0 0 0 1 hg19 1 58706938.0 19 7114194.0 0 0 UNEVALUABLE UNEVALUABLE
659_ciZ intergenic(LMO4,PKN2) MYBPHL chr1 88300088 chr1 109296356 BND CALL_659_ciZ_4 FP call 0.0 0 0 0 1686 hg19 1 88765771.0 1 109838978.0 0 0 UNEVALUABLE UNEVALUABLE
659_ciZ ASH1L XIAP chr1 155346040 chrX 123912446 BND CALL_659_ciZ_5 FP call 0.0 0 0 748 0 hg19 1 155315831.0 X 123046296.0 0 0 UNEVALUABLE UNEVALUABLE
659_ciZ intergenic(CMKLR2,ZDBF2) PDPK1 chr2 206250269 chr16 2598825 BND CALL_659_ciZ_6 FP call 0.0 0 0 2 0 hg19 2 207114993.0 16 2648826.0 0 0 UNEVALUABLE UNEVALUABLE
659_ciZ PPARG SLC7A14 chr3 12368169 chr3 170526438 BND CALL_659_ciZ_7 FP call 0.0 0 0 3 1857 hg19 3 12409668.0 3 170244227.0 0 3 UNEVALUABLE UNEVALUABLE
659_ciZ TOP2B PECR chr3 25609685 chr2 216030413 BND CALL_659_ciZ_8 FP call 0.0 0 0 1638 4 hg19 3 25651176.0 2 216895136.0 0 4 UNEVALUABLE UNEVALUABLE
659_ciZ intergenic(OXSM,LRRC3B) ACAD11 chr3 26058440 chr3 132576967 DEL CALL_659_ciZ_9 FP call 0.0342 0 0 1 431 hg19 3 26099931.0 3 132295811.0 0 1 UNEVALUABLE UNEVALUABLE
659_ciZ RNF4 CCT6A chr4 2476636 chr7 56051889 BND CALL_659_ciZ_10 FP call 0.0 0 0 15 632 hg19 4 2478363.0 7 56119582.0 0 15 UNEVALUABLE UNEVALUABLE
659_ciZ SCLT1 CHD2 chr4 129016418 chr15 93004723 BND CALL_659_ciZ_11 FP call 0.0 0 0 1 2167 hg19 4 129937573.0 15 93547953.0 0 1 UNEVALUABLE UNEVALUABLE
659_ciZ intergenic(RAPGEF2,FSTL5) ARID1B chr4 161193747 chr6 156940180 BND CALL_659_ciZ_12 FP call 0.0 0 0 0 1 hg19 4 162114899.0 6 157261314.0 0 0 UNEVALUABLE UNEVALUABLE
659_ciZ RGMB intergenic(TSN,CNTNAP5) chr5 98793413 chr2 122925598 BND CALL_659_ciZ_13 FP call 0.0 0 0 2855 3 hg19 5 98129117.0 2 123683174.0 0 3 UNEVALUABLE UNEVALUABLE
659_ciZ intergenic(SLCO6A1,PAM) USP24 chr5 102560159 chr1 55089660 BND CALL_659_ciZ_14 FP call 0.0001 0 0 0 393 hg19 5 101895863.0 1 55555333.0 0 0 UNEVALUABLE UNEVALUABLE
659_ciZ intergenic(ARHGAP26,NR3C1) NTRK2 chr5 143275903 chr9 84730857 BND CALL_659_ciZ_15 FP call 0.0 0 0 0 2 hg19 5 142655468.0 9 87345772.0 0 0 UNEVALUABLE UNEVALUABLE
659_ciZ CSMD1 HLA-A chr8 4337044 chr6 29944473 BND CALL_659_ciZ_16 FP call 0.0 0 0 0 7309 hg19 8 4194566.0 6 29912250.0 0 0 UNEVALUABLE UNEVALUABLE
659_ciZ NRG1 AFF2 chr8 32684612 chrX 148700353 BND CALL_659_ciZ_17 FP call 0.0 0 0 0 0 hg19 8 32542130.0 X 147781877.0 0 0 UNEVALUABLE UNEVALUABLE
659_ciZ SLC24A2 MMP17 chr9 19615871 chr12 131840716 BND CALL_659_ciZ_18 FP call 0.0015 0 0 8 2080 hg19 9 19615869.0 12 132325261.0 0 8 UNEVALUABLE UNEVALUABLE
659_ciZ ENTPD2 intergenic(CYP1B1,ATL2) chr9 137052275 chr2 38289750 BND CALL_659_ciZ_19 FP call 0.0 0 0 1046 2 hg19 9 139946727.0 2 38516892.0 0 2 UNEVALUABLE UNEVALUABLE
659_ciZ NCOA4 RET chr10 46007683 chr10 43115042 BND CALL_659_ciZ_20 TP_DUP call 0.9999 0 0 0 15842 hg19 10 51588137.0 10 43610490.0 0 0 UNEVALUABLE UNEVALUABLE
659_ciZ PRKG1 ARSA chr10 52111280 chr22 50625617 BND CALL_659_ciZ_21 FP call 0.0 0 0 0 4727 hg19 10 53871040.0 22 51064045.0 0 0 UNEVALUABLE UNEVALUABLE
659_ciZ PTEN intergenic(PLPP4,WDR11) chr10 87971576 chr10 120743917 BND CALL_659_ciZ_22 FP call 0.0 0 0 0 3 hg19 10 89731333.0 10 122503429.0 0 0 UNEVALUABLE UNEVALUABLE
659_ciZ intergenic(SMIM38,MYEOV) ETV6 chr11 69220138 chr12 11859080 BND CALL_659_ciZ_23 FP call 0.0 0 0 6 8920 hg19 11 68987605.0 12 12012014.0 0 6 UNEVALUABLE UNEVALUABLE
659_ciZ ARAP1 intergenic(PTPRU,ENSG00000289710) chr11 72704178 chr1 30134087 BND CALL_659_ciZ_24 FP call 0.0 0 0 1379 1 hg19 11 72415223.0 1 30606934.0 0 1 UNEVALUABLE UNEVALUABLE
659_ciZ SP1 SF3B1 chr12 53401580 chr2 197391693 BND CALL_659_ciZ_25 FP call 0.0 0 0 15 48 hg19 12 53795364.0 2 198256417.0 0 15 UNEVALUABLE UNEVALUABLE
659_ciZ FBXO21 NTRK1 chr12 117173926 chr1 156873114 BND CALL_659_ciZ_26 FP call 0.0 0 0 452 11067 hg19 12 117611731.0 1 156842906.0 0 452 EVALUABLE BAM_REFUTED
659_ciZ ENOX1 FRYL chr13 43385466 chr4 48623179 BND CALL_659_ciZ_27 FP call 0.0001 0 0 4 386 hg19 13 43959602.0 4 48625196.0 0 4 UNEVALUABLE UNEVALUABLE
659_ciZ DAAM1 PKIB chr14 59325964 chr6 122517694 BND CALL_659_ciZ_28 FP call 0.0003 0 0 1263 0 hg19 14 59792682.0 6 122838839.0 0 0 UNEVALUABLE UNEVALUABLE
659_ciZ AP4E1 intergenic(PITRM1,KLF6) chr15 50929090 chr10 3714018 BND CALL_659_ciZ_29 FP call 0.0006 0 0 805 13 hg19 15 51221287.0 10 3756210.0 0 13 UNEVALUABLE UNEVALUABLE
659_ciZ GGA2 GATA3 chr16 23466651 chr10 8054662 BND CALL_659_ciZ_30 FP call 0.0 0 0 5 0 hg19 16 23477972.0 10 8096625.0 0 0 UNEVALUABLE UNEVALUABLE
659_ciZ CSNK2A2 AR chr16 58161526 chrX 67695743 BND CALL_659_ciZ_31 FP call 0.0 0 0 2 5484 hg19 16 58195430.0 X 66915585.0 0 2 UNEVALUABLE UNEVALUABLE
659_ciZ intergenic(CA10,KIF2B) NTRK3 chr17 53745722 chr15 88059080 BND CALL_659_ciZ_32 FP call 0.0 0 0 0 2 hg19 17 51823083.0 15 88602311.0 0 0 UNEVALUABLE UNEVALUABLE
659_ciZ SMCHD1 PDGFRB chr18 2689952 chr5 150155722 BND CALL_659_ciZ_33 FP call 0.0 0 0 0 3 hg19 18 2689950.0 5 149535285.0 0 0 UNEVALUABLE UNEVALUABLE
659_ciZ DTNA PAX5 chr18 34518705 chr9 36834453 BND CALL_659_ciZ_34 FP call 0.0 0 0 12 14 hg19 18 32098669.0 9 36834450.0 0 12 UNEVALUABLE UNEVALUABLE
659_ciZ LOXHD1 TPD52 chr18 46546966 chr8 80119513 BND CALL_659_ciZ_35 FP call 0.0 0 0 1274 1 hg19 18 44126929.0 8 81031748.0 0 1 UNEVALUABLE UNEVALUABLE
659_ciZ NIBAN3 DUSP10 chr19 17530779 chr1 221712463 BND CALL_659_ciZ_36 FP call 0.0007 0 0 900 2 hg19 19 17641588.0 1 221885805.0 0 2 UNEVALUABLE UNEVALUABLE
659_ciZ intergenic(WFDC12,PI3) FAM83H chr20 45174107 chr8 143727238 BND CALL_659_ciZ_37 FP call 0.0003 0 0 2 4299 hg19 20 43802748.0 8 144809408.0 0 2 UNEVALUABLE UNEVALUABLE
659_ciZ BCR MAST4 chr22 23316844 chr5 67020192 BND CALL_659_ciZ_38 FP call 0.0003 0 0 0 1 hg19 22 23659031.0 5 66316020.0 0 0 UNEVALUABLE UNEVALUABLE
659_ciZ RET NCOA4 chr10 43115037 chr10 46007689 DELETION TRUTH_659_ciZ_39 TRUTH truth 653.0 0 0 15914 0 hg19 10 43610485.0 10 51588131.0 0 0 UNEVALUABLE UNEVALUABLE
659_cl5 intergenic(COX18,ANKRD17) TMPRSS2 chr4 73070959 chr21 41487565 BND CALL_659_cl5_0 FP call 0.0161 0 0 2 44 hg19 4.0 73936676.0 21.0 42859492.0 0 2 UNEVALUABLE UNEVALUABLE
659_cl5 intergenic(TCIM,ZMAT4) PDLIM5 chr8 40514963 chr4 94585636 BND CALL_659_cl5_1 FP call 0.0003 0 0 0 738 hg19 8.0 40372482.0 4.0 95506787.0 0 0 UNEVALUABLE UNEVALUABLE
659_cl5 intergenic(SLC24A2,MLLT3) IFNA21 chr9 20330621 chr9 21166154 BND CALL_659_cl5_2 TP call 0.9367 0 0 2 6113 hg19 9.0 20330619.0 9.0 21166153.0 0 2 UNEVALUABLE UNEVALUABLE
659_cl5 DAPK1 CASC3 chr9 87571411 chr17 40140583 BND CALL_659_cl5_3 FP call 0.0 3 0 61 1207 hg19 9.0 90186326.0 17.0 38296836.0 3 61 EVALUABLE BAM_CONFIRMED
659_cl5 SHLD2 PDCD11 chr10 87176439 chr10 103419634 DEL CALL_659_cl5_4 FP call 0.757 0 0 493 914 hg19 10.0 88936196.0 10.0 105179391.0 0 493 EVALUABLE BAM_REFUTED
659_cl5 intergenic(PTEN,RNLS) ARID1B chr10 87977755 chr6 156938303 BND CALL_659_cl5_5 FP call 0.0 0 0 0 1 hg19 10.0 89737512.0 6.0 157259437.0 0 0 UNEVALUABLE UNEVALUABLE
659_cl5 intergenic(SEC23IP,PLPP4) HLA-DQA2 chr10 119973389 chr6 32746272 BND CALL_659_cl5_6 FP call 0.0 0 0 0 3926 hg19 10.0 121732901.0 6.0 32714049.0 0 0 UNEVALUABLE UNEVALUABLE
659_cl5 TMEM117 IKBKB chr12 44099842 chr8 42325999 BND CALL_659_cl5_7 FP call 0.0 0 0 1 1847 hg19 12.0 44493645.0 8.0 42183517.0 0 1 UNEVALUABLE UNEVALUABLE
659_cl5 TP53 intergenic(PLEKHM1,LINC02210-CRHR1) chr17 7687282 chr17 45574133 DUP CALL_659_cl5_8 FP call 0.0169 0 0 1 5 hg19 17.0 7590600.0 17.0 43651499.0 0 1 UNEVALUABLE UNEVALUABLE
659_cl5 SMAD2 PTP4A2 chr18 47820287 chr1 31924706 BND CALL_659_cl5_9 FP call 0.0001 0 0 5 0 hg19 18.0 45346658.0 1.0 32390307.0 0 0 UNEVALUABLE UNEVALUABLE
659_cl5 EIF2S2 SMAD2 chr20 34111316 chr18 47820141 BND CALL_659_cl5_10 FP call 0.0003 0 0 13 7 hg19 20.0 32699122.0 18.0 45346512.0 0 7 UNEVALUABLE UNEVALUABLE
659_cl5 ERG TMPRSS2 chr21 38501084 chr21 41500153 DEL CALL_659_cl5_11 TP call 0.9979 0 0 10 13609 hg19 21.0 39873008.0 21.0 42872080.0 0 10 UNEVALUABLE UNEVALUABLE
659_cl5 BCR FLCN chr22 23296625 chr17 17213289 BND CALL_659_cl5_12 FP call 0.0 0 0 23 2531 hg19 22.0 23638812.0 17.0 17116603.0 0 23 EVALUABLE BAM_REFUTED
659_cl5 intergenic(TTLL1,BIK) TP53 chr22 43108159 chr17 7687333 BND CALL_659_cl5_13 FP call 0.2217 0 0 35 1 hg19 22.0 43504165.0 17.0 7590651.0 0 1 UNEVALUABLE UNEVALUABLE
659_cl5 intergenic(.,.) HLA-DQB1 chr6_GL000256v2_alt 4057241 chr6 32660059 BND CALL_659_cl5_14 FP call 0.0008 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_cl5 intergenic(SLC24A2,MLLT3) IFNA21 chr9 20330620 chr9 21166153 INVERSION TRUTH_659_cl5_15 TRUTH truth 153.0 0 0 2 6113 hg19 9.0 20330618.0 9.0 21166152.0 0 2 UNEVALUABLE UNEVALUABLE
659_cl5 ERG TMPRSS2 chr21 38501079 chr21 41500152 DELETION TRUTH_659_cl5_16 TRUTH truth 68.0 0 0 10 13613 hg19 21.0 39873003.0 21.0 42872079.0 0 10 UNEVALUABLE UNEVALUABLE
659_cwR intergenic(SLC4A3,EPHA4) COBLL1 chr2 220711889 chr2 164841210 BND CALL_659_cwR_0 TP_DUP call 0.3377 0 0 0 1532 hg19 2 221576609.0 2 165697720.0 0 0 UNEVALUABLE UNEVALUABLE
659_cwR ATOX1 CAMLG chr5 151752187 chr5 134741205 BND CALL_659_cwR_1 TP_DUP call 0.9373 0 0 464 973 hg19 5 151131748.0 5 134076895.0 0 464 EVALUABLE BAM_REFUTED
659_cwR UBAP1 intergenic(KDM4C,DMAC1) chr9 34234340 chr9 7709367 BND CALL_659_cwR_2 FP call 0.4202 0 0 466 0 hg19 9 34234338.0 9 7709367.0 0 0 UNEVALUABLE UNEVALUABLE
659_cwR MRC1 intergenic(AGAP4,TIMM23) chr10 17901994 chr10 45875820 BND CALL_659_cwR_3 FP call 0.5487 0 0 0 0 hg19 10 18190923.0 10 46371268.0 0 0 UNEVALUABLE UNEVALUABLE
659_cwR BCAS4 CABLES2 chr20 50839894 chr20 62391314 DUP CALL_659_cwR_4 TP call 0.1405 0 0 35 1952 hg19 20 49456431.0 20 60966370.0 0 35 EVALUABLE BAM_REFUTED
659_cwR intergenic(KCNG1,NFATC2) SYCP2 chr20 51150173 chr20 59869855 BND CALL_659_cwR_5 FP call 0.0026 0 0 10 342 hg19 20 49766710.0 20 58444910.0 0 10 UNEVALUABLE UNEVALUABLE
659_cwR intergenic(TSHZ2,ZNF217) SOX18 chr20 53500438 chr20 64049291 DEL CALL_659_cwR_6 TP call 0.976 0 0 1 2030 hg19 20 52116977.0 20 62680644.0 0 1 UNEVALUABLE UNEVALUABLE
659_cwR intergenic(.,TPTE) SLC17A9 chr21 9841200 chr20 62956806 BND CALL_659_cwR_7 FP call 0.0159 -1 -1 0 0 hg19 chr4_gl000193_random 108514.0 20 61588158.0 -2 0 UNEVALUABLE UNEVALUABLE
659_cwR COBLL1 intergenic(SLC4A3,EPHA4) chr2 164841208 chr2 220711887 INVERSION TRUTH_659_cwR_8 TRUTH truth 102.0 0 0 1532 0 hg19 2 165697718.0 2 221576607.0 0 0 UNEVALUABLE UNEVALUABLE
659_cwR CAMLG ATOX1 chr5 134741203 chr5 151752185 INVERSION TRUTH_659_cwR_9 TRUTH truth 49.0 0 0 973 466 hg19 5 134076893.0 5 151131746.0 0 466 EVALUABLE BAM_REFUTED
659_cwR BCAS4 CABLES2 chr20 50839893 chr20 62391313 DUPLICATION TRUTH_659_cwR_10 TRUTH truth 26.0 0 0 33 1952 hg19 20 49456430.0 20 60966369.0 0 33 EVALUABLE BAM_REFUTED
659_cwR intergenic(KCNG1,NFATC2) PRPF6 chr20 51253505 chr20 64031996 DELETION TRUTH_659_cwR_11 TRUTH truth 60.0 0 0 0 1081 hg19 20 49870042.0 20 62663349.0 0 0 UNEVALUABLE UNEVALUABLE
659_cwR intergenic(TSHZ2,ZNF217) SOX18 chr20 53500437 chr20 64049290 DELETION TRUTH_659_cwR_12 TRUTH truth 35.0 0 0 1 2033 hg19 20 52116976.0 20 62680643.0 0 1 UNEVALUABLE UNEVALUABLE
659_dts MELK EXOSC3 chr9 36607628 chr9 37826388 DEL CALL_659_dts_0 FP call 0.3939 0 0 407 9 hg19 9 36607625.0 9 37826385.0 0 9 UNEVALUABLE UNEVALUABLE
659_dts KIF5B RET chr10 32026935 chr10 43116576 BND CALL_659_dts_1 TP call 0.8468 0 0 2 12369 hg19 10 32315863.0 10 43612024.0 0 2 UNEVALUABLE UNEVALUABLE
659_dts MED19 DBF4 chr11 57708724 chr7 87907191 BND CALL_659_dts_2 TP_DUP call 0.9926 0 0 4 1975 hg19 11 57476196.0 7 87536506.0 0 4 UNEVALUABLE UNEVALUABLE
659_dts DBF4 MED19 chr7 87907190 chr11 57708723 TRANSLOCATION TRUTH_659_dts_3 TRUTH truth 24.0 0 0 1972 4 hg19 7 87536505.0 11 57476195.0 0 4 UNEVALUABLE UNEVALUABLE
659_dts KIF5B RET chr10 32026934 chr10 43116575 INVERSION TRUTH_659_dts_4 TRUTH truth 172.0 0 0 2 12360 hg19 10 32315862.0 10 43612023.0 0 2 UNEVALUABLE UNEVALUABLE
659_eZ4 intergenic(FZD8,ANKRD30A) NAMPT chr10 36522963 chr7 106250839 BND CALL_659_eZ4_0 FP call 0.0 0 0 1809 305 hg19 10 36811891.0 7 105891285.0 0 305 EVALUABLE BAM_REFUTED
659_eZ4 intergenic(SNX29,CPPED1) STAG2 chr16 12606904 chrX 123960603 BND CALL_659_eZ4_1 FP call 0.0 0 0 0 0 hg19 16 12700761.0 X 123094453.0 0 0 UNEVALUABLE UNEVALUABLE
659_eZ4 LTN1 PCM1 chr21 28946046 chr8 17966163 BND CALL_659_eZ4_2 TP_DUP call 0.9929 0 0 930 1028 hg19 21 30318368.0 8 17823672.0 0 930 EVALUABLE BAM_REFUTED
659_eZ4 ERG TMPRSS2 chr21 38469544 chr21 41499095 DEL CALL_659_eZ4_3 TP call 0.9999 0 0 1 12047 hg19 21 39841467.0 21 42871022.0 0 1 UNEVALUABLE UNEVALUABLE
659_eZ4 intergenic(NLGN4Y,CDY2B) STAG2 chrY 15883033 chrX 123960603 BND CALL_659_eZ4_4 FP call 0.0 0 0 139 0 hg19 Y 17994913.0 X 123094453.0 0 0 UNEVALUABLE UNEVALUABLE
659_eZ4 ERG TMPRSS2 chr21 38469543 chr21 41499094 DELETION TRUTH_659_eZ4_5 TRUTH truth 389.0 0 0 1 12049 hg19 21 39841466.0 21 42871021.0 0 1 UNEVALUABLE UNEVALUABLE
659_eZ4 PCM1 LTN1 chr8 17966161 chr21 28946045 TRANSLOCATION TRUTH_659_eZ4_6 TRUTH truth 83.0 0 0 1028 930 hg19 8 17823670.0 21 30318367.0 0 930 EVALUABLE BAM_REFUTED
659_ekC HLA-F HLA-C chr6 29724491 chr6 31271223 BND CALL_659_ekC_0 FP call 0.0 0 0 2717 12532 hg19 6.0 29692268.0 6.0 31239000.0 0 2717 EVALUABLE BAM_REFUTED
659_ekC intergenic(OR10P1,METTL7B) EWSR1 chr12 55680369 chr22 29288138 BND CALL_659_ekC_1 TP call 0.9396 0 0 2 8987 hg19 12.0 56074153.0 22.0 29684127.0 0 2 UNEVALUABLE UNEVALUABLE
659_ekC DDIT3 EWSR1 chr12 57518281 chr22 29288185 BND CALL_659_ekC_2 TP call 0.9988 0 0 6051 8820 hg19 12.0 57912064.0 22.0 29684174.0 0 6051 EVALUABLE BAM_REFUTED
659_ekC MORF4L1 ENPP1 chr15 78849610 chr6 131847823 BND CALL_659_ekC_3 FP call 0.0 0 0 9 381 hg19 15.0 79141952.0 6.0 132168963.0 0 9 UNEVALUABLE UNEVALUABLE
659_ekC RBFOX1 PGR chr16 6065273 chr11 101128396 BND CALL_659_ekC_4 FP call 0.0 0 0 1 3637 hg19 16.0 6115274.0 11.0 100999127.0 0 1 UNEVALUABLE UNEVALUABLE
659_ekC intergenic(.,.) MUC3A chrUn_JTFH01000054v1_decoy 4038 chr7 100956116 BND CALL_659_ekC_5 FP call 0.0002 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_ekC intergenic(OR10P1,METTL7B) EWSR1 chr12 55680368 chr22 29288137 TRANSLOCATION TRUTH_659_ekC_6 TRUTH truth 118.0 0 0 2 8996 hg19 12.0 56074152.0 22.0 29684126.0 0 2 UNEVALUABLE UNEVALUABLE
659_ekC ENSG00000285133 EWSR1 chr12 57518280 chr22 29288184 TRANSLOCATION TRUTH_659_ekC_7 TRUTH truth 444.0 0 0 6056 8821 hg19 12.0 57912063.0 22.0 29684173.0 0 6056 EVALUABLE BAM_REFUTED
659_hv CCDC17 intergenic(CAVIN4,PLPPR1) chr1 45620345 chr9 100733750 BND CALL_659_hv_0 TP call 0.9761 0 0 2467 5 hg19 1.0 46086017.0 9.0 103496032.0 0 5 UNEVALUABLE UNEVALUABLE
659_hv BAZ2B SHISA9 chr2 159375639 chr16 13235079 BND CALL_659_hv_1 FP call 0.0004 0 0 0 2251 hg19 2.0 160232150.0 16.0 13328936.0 0 0 UNEVALUABLE UNEVALUABLE
659_hv NSD2 intergenic(BEND4,SHISA3) chr4 1941915 chr4 42324621 DUP CALL_659_hv_2 TP call 0.4501 0 0 7190 3 hg19 4.0 1943642.0 4.0 42326638.0 0 3 UNEVALUABLE UNEVALUABLE
659_hv MYLIP LRRK2 chr6 16131135 chr12 40249922 BND CALL_659_hv_3 TP call 0.9151 0 0 727 679 hg19 6.0 16131366.0 12.0 40643724.0 0 679 EVALUABLE BAM_REFUTED
659_hv IDO1 intergenic(DOK5,CBLN4) chr8 39923522 chr20 54769043 BND CALL_659_hv_4 FP call 0.9941 0 0 348 0 hg19 8.0 39781041.0 20.0 53385582.0 0 0 UNEVALUABLE UNEVALUABLE
659_hv intergenic(ENSG00000285082,BRINP1) CDK5RAP2 chr9 118893547 chr9 120407141 DEL CALL_659_hv_5 TP call 0.9322 0 0 0 788 hg19 9.0 121655825.0 9.0 123169419.0 0 0 UNEVALUABLE UNEVALUABLE
659_hv MAPKAP1 ABCA2 chr9 125556982 chr9 137022844 DEL CALL_659_hv_6 TP call 0.9342 0 0 1 3037 hg19 9.0 128319261.0 9.0 139917296.0 0 1 UNEVALUABLE UNEVALUABLE
659_hv SH2D3C STKLD1 chr9 127738918 chr9 133397503 DEL CALL_659_hv_7 TP call 0.9609 0 0 1064 1483 hg19 9.0 130501197.0 9.0 136262630.0 0 1064 EVALUABLE BAM_REFUTED
659_hv PTPA SARDH chr9 129136252 chr9 133733951 DUP CALL_659_hv_8 TP call 0.9725 0 0 1162 2063 hg19 9.0 131898531.0 9.0 136599073.0 0 1162 EVALUABLE BAM_REFUTED
659_hv EXOSC2 ABCA2 chr9 130700878 chr9 137024615 DUP CALL_659_hv_9 TP call 0.9574 0 0 515 771 hg19 9.0 133576265.0 9.0 139919067.0 0 515 EVALUABLE BAM_REFUTED
659_hv SARDH RBFA chr9 133734012 chr18 80047229 BND CALL_659_hv_10 FP call 0.0261 0 0 2063 0 hg19 9.0 136599134.0 18.0 77807229.0 0 0 UNEVALUABLE UNEVALUABLE
659_hv MBNL2 ZBTB45 chr13 97292429 chr19 58516999 BND CALL_659_hv_11 FP call 0.0008 0 0 13 6699 hg19 13.0 97944683.0 19.0 59028366.0 0 13 UNEVALUABLE UNEVALUABLE
659_hv RAD51B ZNF583 chr14 68650101 chr19 56414072 BND CALL_659_hv_12 TP call 0.9377 0 0 0 1392 hg19 14.0 69116818.0 19.0 56925441.0 0 0 UNEVALUABLE UNEVALUABLE
659_hv ZNF236 intergenic(SALL3,ATP9B) chr18 76937321 chr18 79011589 DEL CALL_659_hv_13 TP call 0.8816 0 0 1074 0 hg19 18.0 74649277.0 18.0 76771589.0 0 0 UNEVALUABLE UNEVALUABLE
659_hv CASS4 intergenic(CDH26,CDH4) chr20 56437451 chr20 60782472 DUP CALL_659_hv_14 TP call 0.9653 0 0 1791 0 hg19 20.0 55012507.0 20.0 59357528.0 0 0 UNEVALUABLE UNEVALUABLE
659_hv intergenic(.,.) MUC3A chrUn_JTFH01000054v1_decoy 1199 chr7 100955298 BND CALL_659_hv_15 FP call 0.0007 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_hv NSD2 intergenic(BEND4,SHISA3) chr4 1941914 chr4 42324620 DUPLICATION TRUTH_659_hv_16 TRUTH truth 65.0 0 0 7192 3 hg19 4.0 1943641.0 4.0 42326637.0 0 3 UNEVALUABLE UNEVALUABLE
659_hv intergenic(ENSG00000285082,BRINP1) CDK5RAP2 chr9 118893546 chr9 120407140 DELETION TRUTH_659_hv_17 TRUTH truth 49.0 0 0 0 788 hg19 9.0 121655824.0 9.0 123169418.0 0 0 UNEVALUABLE UNEVALUABLE
659_hv EXOSC2 ABCA2 chr9 130700877 chr9 137024614 DUPLICATION TRUTH_659_hv_18 TRUTH truth 68.0 0 0 515 779 hg19 9.0 133576264.0 9.0 139919066.0 0 515 EVALUABLE BAM_REFUTED
659_hv SH2D3C STKLD1 chr9 127738917 chr9 133397502 DELETION TRUTH_659_hv_19 TRUTH truth 59.0 0 0 1064 1481 hg19 9.0 130501196.0 9.0 136262629.0 0 1064 EVALUABLE BAM_REFUTED
659_hv ZNF236 intergenic(SALL3,ATP9B) chr18 76937320 chr18 79011588 DELETION TRUTH_659_hv_20 TRUTH truth 74.0 0 0 1074 0 hg19 18.0 74649276.0 18.0 76771588.0 0 0 UNEVALUABLE UNEVALUABLE
659_hv MYLIP LRRK2 chr6 16131134 chr12 40249921 TRANSLOCATION TRUTH_659_hv_21 TRUTH truth 59.0 0 0 732 679 hg19 6.0 16131365.0 12.0 40643723.0 0 679 EVALUABLE BAM_REFUTED
659_hv RAD51B ZNF583 chr14 68650100 chr19 56414071 TRANSLOCATION TRUTH_659_hv_22 TRUTH truth 27.0 0 0 0 1392 hg19 14.0 69116817.0 19.0 56925440.0 0 0 UNEVALUABLE UNEVALUABLE
659_hv CASS4 intergenic(CDH26,CDH4) chr20 56437450 chr20 60782471 DUPLICATION TRUTH_659_hv_23 TRUTH truth 25.0 0 0 1791 0 hg19 20.0 55012506.0 20.0 59357527.0 0 0 UNEVALUABLE UNEVALUABLE
659_hv CORO1B intergenic(KLK14,CTU1) chr11 67438386 chr19 51086216 TRANSLOCATION TRUTH_659_hv_24 TRUTH truth 92.0 0 0 2942 8 hg19 11.0 67205857.0 19.0 51589473.0 0 8 UNEVALUABLE UNEVALUABLE
659_hv CCDC17 intergenic(CAVIN4,PLPPR1) chr1 45620344 chr9 100733749 TRANSLOCATION TRUTH_659_hv_25 TRUTH truth 131.0 0 0 2464 5 hg19 1.0 46086016.0 9.0 103496031.0 0 5 UNEVALUABLE UNEVALUABLE
659_hv MAPKAP1 ABCA2 chr9 125556981 chr9 137022843 DELETION TRUTH_659_hv_26 TRUTH truth 73.0 0 0 1 3040 hg19 9.0 128319260.0 9.0 139917295.0 0 1 UNEVALUABLE UNEVALUABLE
659_hv PTPA SARDH chr9 129136193 chr9 133733980 DUPLICATION TRUTH_659_hv_27 TRUTH truth 38.0 0 0 1142 2063 hg19 9.0 131898472.0 9.0 136599102.0 0 1142 EVALUABLE BAM_REFUTED
659_jS intergenic(BARHL2,ZNF644) NRG1 chr1 90782859 chr8 32640810 BND CALL_659_jS_0 FP call 0.0 0 0 22 10 hg19 1 91248416.0 8 32498329.0 0 10 UNEVALUABLE UNEVALUABLE
659_jS TFE3 NONO chrX 49037801 chrX 71298870 BND CALL_659_jS_1 TP_DUP call 0.995 0 0 6597 691 hg19 X 48895326.0 X 70518720.0 0 691 EVALUABLE BAM_REFUTED
659_jS TFE3 NONO chrX 49037798 chrX 71298868 INVERSION TRUTH_659_jS_2 TRUTH truth 291.0 0 0 6595 691 hg19 X 48895323.0 X 70518718.0 0 691 EVALUABLE BAM_REFUTED
659_zO intergenic(TNFAIP8,HSD17B4) AP3B1 chr5 119400716 chr5 78165653 BND CALL_659_zO_0 FP call 0.9426 0 0 0 265 hg19 5 118736411.0 5 77461477.0 0 0 UNEVALUABLE UNEVALUABLE
659_zO intergenic(SEC61G,EGFR) EGFR chr7 54992401 chr7 55211181 DEL CALL_659_zO_1 FP call 0.7807 0 0 17 0 hg19 7 55060094.0 7 55278874.0 0 0 UNEVALUABLE UNEVALUABLE
659_zO KCNV1 intergenic(CHTF18,LMF1) chr8 109964540 chr16 805734 BND CALL_659_zO_2 TP call 0.881 0 0 1 1970 hg19 8 110976769.0 16 855734.0 0 1 UNEVALUABLE UNEVALUABLE
659_zO intergenic(FZD8,ANKRD30A) NAMPT chr10 36522743 chr7 106250877 BND CALL_659_zO_3 FP call 0.0 0 0 1027 280 hg19 10 36811671.0 7 105891323.0 0 280 EVALUABLE BAM_REFUTED
659_zO GUCY1A2 intergenic(CDH2,DSC3) chr11 106810222 chr18 28484623 BND CALL_659_zO_4 FP call 0.0 0 0 913 2 hg19 11 106680948.0 18 26064587.0 0 2 UNEVALUABLE UNEVALUABLE
659_zO RORA TPM1 chr15 60686999 chr15 63061199 DEL CALL_659_zO_5 TP call 0.9875 0 0 5 1181 hg19 15 60979198.0 15 63353398.0 0 5 UNEVALUABLE UNEVALUABLE
659_zO ERG SLC45A3 chr21 38491192 chr1 205679771 BND CALL_659_zO_6 FP call 0.0236 0 0 0 8 hg19 21 39863115.0 1 205648899.0 0 0 UNEVALUABLE UNEVALUABLE
659_zO KCNV1 intergenic(CHTF18,LMF1) chr8 109964539 chr16 805733 TRANSLOCATION TRUTH_659_zO_7 TRUTH truth 25.0 0 0 1 1970 hg19 8 110976768.0 16 855733.0 0 1 UNEVALUABLE UNEVALUABLE
659_zO RORA TPM1 chr15 60686998 chr15 63061198 DELETION TRUTH_659_zO_8 TRUTH truth 90.0 0 0 5 1180 hg19 15 60979197.0 15 63353397.0 0 5 UNEVALUABLE UNEVALUABLE
659_d1e HLA-C HLA-B chr6 31270662 chr6 31355922 DEL CALL_659_d1e_0 FP call 0.0 137 0 11227 9664 hg19 6.0 31238439.0 6.0 31323699.0 137 9664 EVALUABLE BAM_CONFIRMED
659_d1e HLA-C HLA-G chr6 31271503 chr6 29828368 BND CALL_659_d1e_1 FP call 0.0 0 0 12943 5087 hg19 6.0 31239280.0 6.0 29796145.0 0 5087 EVALUABLE BAM_REFUTED
659_d1e CCDC6 FGFR2 chr10 59900332 chr10 121481224 DEL CALL_659_d1e_2 TP call 0.9024 0 0 0 11385 hg19 10.0 61660090.0 10.0 123240738.0 0 0 UNEVALUABLE UNEVALUABLE
659_d1e intergenic(.,.) MUC3A chrUn_JTFH01000054v1_decoy 420 chr7 100954606 BND CALL_659_d1e_3 FP call 0.0 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_d1e CCDC6 FGFR2 chr10 59900331 chr10 121481223 DELETION TRUTH_659_d1e_4 TRUTH truth 883.0 0 0 0 11393 hg19 10.0 61660089.0 10.0 123240737.0 0 0 UNEVALUABLE UNEVALUABLE
659_dNh intergenic(JRKL,CNTN5) KAT6A chr11 97145736 chr8 41931033 BND CALL_659_dNh_0 FP call 0.0 0 0 1 0 hg19 11 97016736.0 8 41788551.0 0 0 UNEVALUABLE UNEVALUABLE
659_dNh TFE3 ASPSCR1 chrX 49034443 chr17 82005042 BND CALL_659_dNh_1 TP_DUP call 0.9986 0 0 7479 1 hg19 X 48891957.0 17 79962918.0 0 1 UNEVALUABLE UNEVALUABLE
659_dNh SHROOM4 NRG1 chrX 50696041 chr8 32747741 BND CALL_659_dNh_2 FP call 0.0 0 0 889 0 hg19 X 50439041.0 8 32605259.0 0 0 UNEVALUABLE UNEVALUABLE
659_dNh intergenic(MAGED4B,MAGED4) NRG1 chrX 52156816 chr8 32723361 BND CALL_659_dNh_3 FP call 0.0 0 0 0 10 hg19 X 51899912.0 8 32580879.0 0 0 UNEVALUABLE UNEVALUABLE
659_dNh AR DIP2B chrX 67546515 chr12 50505024 BND CALL_659_dNh_4 FP call 0.0 0 2 9957 571 hg19 X 66766357.0 12 50898807.0 2 571 EVALUABLE BAM_AMBIGUOUS
659_dNh intergenic(.,.) HLA-DPB1 chr6_GL000251v2_alt 4496877 chr6 33085154 BND CALL_659_dNh_5 FP call 0.0 0 0 314 1047 hg19 6 33095735.0 6 33052931.0 0 314 EVALUABLE BAM_REFUTED
659_dNh ASPSCR1 TFE3 chr17 82005040 chrX 49034442 TRANSLOCATION TRUTH_659_dNh_6 TRUTH truth 129.0 0 0 1 7471 hg19 17 79962916.0 X 48891956.0 0 1 UNEVALUABLE UNEVALUABLE
659_dPb NR4A3 EWSR1 chr9 99824105 chr22 29296446 BND CALL_659_dPb_0 TP call 0.9993 0 0 5 11919 hg19 9 102586387.0 22 29692436.0 0 5 UNEVALUABLE UNEVALUABLE
659_dPb TRPC6 PIK3C3 chr11 101831502 chr18 42050011 BND CALL_659_dPb_1 FP call 0.0 0 0 0 336 hg19 11 101702233.0 18 39629975.0 0 0 UNEVALUABLE UNEVALUABLE
659_dPb intergenic(SDK2,RPL38) EWSR1 chr17 73723195 chr22 29296494 BND CALL_659_dPb_2 TP call 0.6201 0 0 2 11918 hg19 17 71719334.0 22 29692484.0 0 2 UNEVALUABLE UNEVALUABLE
659_dPb NR4A3 EWSR1 chr9 99824104 chr22 29296445 TRANSLOCATION TRUTH_659_dPb_3 TRUTH truth 655.0 0 0 5 11923 hg19 9 102586386.0 22 29692435.0 0 5 UNEVALUABLE UNEVALUABLE
659_dPb intergenic(SDK2,RPL38) EWSR1 chr17 73723194 chr22 29296493 TRANSLOCATION TRUTH_659_dPb_4 TRUTH truth 432.0 0 0 2 11929 hg19 17 71719333.0 22 29692483.0 0 2 UNEVALUABLE UNEVALUABLE
659_dz DYSF HLA-DRB1 chr2 71603502 chr6 32579005 BND CALL_659_dz_0 FP call 0.0003 0 0 32 3738 hg19 2 71830632.0 6 32546782.0 0 32 EVALUABLE BAM_REFUTED
659_dz CD74 ENSG00000282218 chr5 150403459 chr6 117325917 BND CALL_659_dz_1 TP call 0.0452 0 0 4382 5753 hg19 5 149783022.0 6 117647080.0 0 4382 EVALUABLE BAM_REFUTED
659_dz MUC6 intergenic(.,.) chr11 1017036 chr11_KI270902v1_alt 83824 BND CALL_659_dz_2 FP call 0.0 765 0 7236 5795 hg19 11 1017036.0 11 1017977.0 765 5795 EVALUABLE BAM_CONFIRMED
659_dz RAX2 intergenic(POLRMT,FGF22) chr19 3770946 chr19 634947 BND CALL_659_dz_3 FP call 0.0001 0 0 2048 10 hg19 19 3770944.0 19 634947.0 0 10 UNEVALUABLE UNEVALUABLE
659_dz CD74 ROS1 chr5 150403458 chr6 117325916 TRANSLOCATION TRUTH_659_dz_4 TRUTH truth 75.0 0 0 4379 5757 hg19 5 149783021.0 6 117647079.0 0 4379 EVALUABLE BAM_REFUTED
659_e6r ERRFI1 GULP1 chr1 8026237 chr2 188292295 BND CALL_659_e6r_0 FP call 0.1979 0 0 3 2 hg19 1 8086297.0 2 189157022.0 0 2 UNEVALUABLE UNEVALUABLE
659_e6r intergenic(SLAIN2,SLC10A4) SLC10A4 chr4 48477793 chr4 48483625 DUP CALL_659_e6r_1 TP call 0.8435 0 0 0 2129 hg19 4 48479810.0 4 48485642.0 0 0 UNEVALUABLE UNEVALUABLE
659_e6r NPY5R KLHL2 chr4 163350846 chr4 165239987 DUP CALL_659_e6r_2 FP call 0.2798 0 0 2511 0 hg19 4 164271998.0 4 166161139.0 0 0 UNEVALUABLE UNEVALUABLE
659_e6r intergenic(MAN1A1,TBC1D32) NTRK3 chr6 120195385 chr15 87987691 BND CALL_659_e6r_3 FP call 0.0 0 0 2 1 hg19 6 120516531.0 15 88530922.0 0 1 UNEVALUABLE UNEVALUABLE
659_e6r GRM1 SOX30 chr6 146222234 chr5 157667844 BND CALL_659_e6r_4 FP call 0.0012 0 0 0 1041 hg19 6 146543370.0 5 157094852.0 0 0 UNEVALUABLE UNEVALUABLE
659_e6r TRAF2 intergenic(CSF3R,GRIK3) chr9 136909983 chr1 36725080 BND CALL_659_e6r_5 FP call 0.0 0 0 598 2 hg19 9 139804435.0 1 37190681.0 0 2 UNEVALUABLE UNEVALUABLE
659_e6r intergenic(KIF20B,HTR7) BCL2 chr10 90490336 chr18 63128615 BND CALL_659_e6r_6 FP call 0.0 0 0 17 8318 hg19 10 92250093.0 18 60795848.0 0 17 UNEVALUABLE UNEVALUABLE
659_e6r intergenic(PCGF6,TAF5) TAF5 chr10 103366545 chr10 103373483 DUP CALL_659_e6r_7 TP call 0.9739 0 0 28 840 hg19 10 105126302.0 10 105133240.0 0 28 EVALUABLE BAM_REFUTED
659_e6r KMT2A IPO7 chr11 118484918 chr11 9405183 BND CALL_659_e6r_8 TP_DUP call 0.9727 0 0 9201 32 hg19 11 118355633.0 11 9426730.0 0 32 EVALUABLE BAM_REFUTED
659_e6r SLC2A13 intergenic(SLC2A13,LRRK2) chr12 40105721 chr12 40115570 DUP CALL_659_e6r_9 TP call 0.9083 0 0 4031 0 hg19 12 40499523.0 12 40509372.0 0 0 UNEVALUABLE UNEVALUABLE
659_e6r EPHX3 BRD4 chr19 15227155 chr19 15238777 DUP CALL_659_e6r_10 TP call 0.9203 0 0 931 9418 hg19 19 15337966.0 19 15349588.0 0 931 EVALUABLE BAM_REFUTED
659_e6r intergenic(MAGEB5,PPP4R3C) DMD chrX 27006200 chrX 31147333 DUP CALL_659_e6r_11 FP call 0.8305 0 0 46 1193 hg19 X 27024317.0 X 31165450.0 0 46 EVALUABLE BAM_REFUTED
659_e6r intergenic(SLAIN2,SLC10A4) SLC10A4 chr4 48477792 chr4 48483624 DUPLICATION TRUTH_659_e6r_12 TRUTH truth 31.0 0 0 0 2128 hg19 4 48479809.0 4 48485641.0 0 0 UNEVALUABLE UNEVALUABLE
659_e6r intergenic(PCGF6,TAF5) TAF5 chr10 103366544 chr10 103373482 DUPLICATION TRUTH_659_e6r_13 TRUTH truth 34.0 0 0 28 840 hg19 10 105126301.0 10 105133239.0 0 28 EVALUABLE BAM_REFUTED
659_e6r IPO7 KMT2A chr11 9405182 chr11 118484917 INVERSION TRUTH_659_e6r_14 TRUTH truth 427.0 0 0 32 9190 hg19 11 9426729.0 11 118355632.0 0 32 EVALUABLE BAM_REFUTED
659_e6r SLC2A13 intergenic(SLC2A13,LRRK2) chr12 40105720 chr12 40115569 DUPLICATION TRUTH_659_e6r_15 TRUTH truth 123.0 0 0 4034 0 hg19 12 40499522.0 12 40509371.0 0 0 UNEVALUABLE UNEVALUABLE
659_e6r EPHX3 BRD4 chr19 15227154 chr19 15238776 DUPLICATION TRUTH_659_e6r_16 TRUTH truth 221.0 0 0 929 9413 hg19 19 15337965.0 19 15349587.0 0 929 EVALUABLE BAM_REFUTED
659_yG KHDRBS1 MCF2L2 chr1 32016641 chr3 183341555 BND CALL_659_yG_0 FP call 0.0024 0 0 14 305 hg19 1 32482242.0 3 183059343.0 0 14 UNEVALUABLE UNEVALUABLE
659_yG intergenic(PBX1,LMX1A) TNR chr1 165101773 chr1 175391364 BND CALL_659_yG_1 FP call 0.0002 0 0 0 1102 hg19 1 165071010.0 1 175360500.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG RASAL2 NLRP9 chr1 178298595 chr19 55733043 BND CALL_659_yG_2 FP call 0.0002 0 0 0 2462 hg19 1 178267730.0 19 56244409.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG TSEN15 PAX5 chr1 184065165 chr9 36834368 BND CALL_659_yG_3 FP call 0.0 0 0 0 6 hg19 1 184034299.0 9 36834365.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG intergenic(CDC73,KCNT2) ACVR1 chr1 194785275 chr2 157780557 BND CALL_659_yG_4 FP call 0.0 0 0 25 1584 hg19 1 194754405.0 2 158637069.0 0 25 EVALUABLE BAM_REFUTED
659_yG MFSD4A FRAS1 chr1 205579754 chr4 78138757 BND CALL_659_yG_5 FP call 0.0016 0 0 1106 1 hg19 1 205548882.0 4 79059911.0 0 1 UNEVALUABLE UNEVALUABLE
659_yG DTL PPP2R5A chr1 212085607 chr1 212347372 DEL CALL_659_yG_6 FP call 0.0006 0 0 3 365 hg19 1 212258949.0 1 212520714.0 0 3 UNEVALUABLE UNEVALUABLE
659_yG GALNT2 CNIH3 chr1 230246358 chr1 224684802 BND CALL_659_yG_7 FP call 0.0 0 0 368 358 hg19 1 230382104.0 1 224872504.0 0 358 EVALUABLE BAM_REFUTED
659_yG SLC35F3 CHEK1 chr1 234220345 chr11 125657093 BND CALL_659_yG_8 FP call 0.0 0 0 1 2 hg19 1 234356091.0 11 125526988.0 0 1 UNEVALUABLE UNEVALUABLE
659_yG MBOAT2 CRYBG1 chr2 8865642 chr6 106520349 BND CALL_659_yG_9 FP call 0.0 0 0 14 4941 hg19 2 9005772.0 6 106968224.0 0 14 UNEVALUABLE UNEVALUABLE
659_yG DNMT3A SERPINB8 chr2 25231930 chr18 64003475 BND CALL_659_yG_10 FP call 0.0 0 0 3 4 hg19 2 25454799.0 18 61670709.0 0 3 UNEVALUABLE UNEVALUABLE
659_yG intergenic(NRXN1,ASB3) NPM1 chr2 52426293 chr5 171410448 BND CALL_659_yG_11 FP call 0.0 0 0 1 972 hg19 2 52653431.0 5 170837452.0 0 1 UNEVALUABLE UNEVALUABLE
659_yG FANCL PEX13 chr2 58226742 chr2 61033837 BND CALL_659_yG_12 FP call 0.0 0 0 1113 3 hg19 2 58453877.0 2 61260972.0 0 3 UNEVALUABLE UNEVALUABLE
659_yG REL intergenic(IGFBP7,ADGRL3) chr2 60927378 chr4 60076216 BND CALL_659_yG_13 FP call 0.0 0 0 0 0 hg19 2 61154513.0 4 60941934.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG intergenic(ANTXR1,GFPT1) ATXN7 chr2 69277855 chr3 63996568 BND CALL_659_yG_14 FP call 0.0 0 0 1 2593 hg19 2 69504987.0 3 63982244.0 0 1 UNEVALUABLE UNEVALUABLE
659_yG IL1RL2 SMAD1 chr2 102225733 chr4 145539911 BND CALL_659_yG_15 FP call 0.0001 0 0 785 1156 hg19 2 102842193.0 4 146461063.0 0 785 EVALUABLE BAM_REFUTED
659_yG SCN2A FOXL2NB chr2 165241137 chr3 138949392 BND CALL_659_yG_16 FP call 0.0002 0 0 8 828 hg19 2 166097647.0 3 138668234.0 0 8 UNEVALUABLE UNEVALUABLE
659_yG intergenic(ACKR3,COPS8) SMAD2 chr2 236673448 chr18 47879518 BND CALL_659_yG_17 FP call 0.0001 0 0 0 2 hg19 2 237582091.0 18 45405889.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG SUMF1 AR chr3 4221415 chrX 67710101 BND CALL_659_yG_18 FP call 0.0001 0 0 5 0 hg19 3 4263099.0 X 66929943.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG intergenic(TAMM41,SYN2) CTNNB1 chr3 11881945 chr3 41195647 DEL CALL_659_yG_19 FP call 0.0145 0 0 16 1 hg19 3 11923419.0 3 41237138.0 0 1 UNEVALUABLE UNEVALUABLE
659_yG IP6K2 TRMT11 chr3 48695375 chr6 126070580 BND CALL_659_yG_20 FP call 0.0002 0 0 2613 0 hg19 3 48732808.0 6 126391726.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG PCOLCE2 TMEM41A chr3 142863125 chr3 185483654 BND CALL_659_yG_21 FP call 0.0 0 0 2 14 hg19 3 142581967.0 3 185201442.0 0 2 UNEVALUABLE UNEVALUABLE
659_yG intergenic(TAPT1,LDB2) RUNX1 chr4 16453897 chr21 34789585 BND CALL_659_yG_22 FP call 0.0005 0 0 13 0 hg19 4 16455520.0 21 36161882.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG intergenic(ACTBL2,PLK2) SIN3A chr5 58260867 chr15 75371225 BND CALL_659_yG_23 FP call 0.0 0 0 20 8 hg19 5 57556694.0 15 75663566.0 0 8 UNEVALUABLE UNEVALUABLE
659_yG intergenic(IPO11,HTR1A) NUAK1 chr5 63829249 chr12 106063717 BND CALL_659_yG_24 FP call 0.0 0 0 1 0 hg19 5 63125076.0 12 106457495.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG BDP1 intergenic(UBIAD1,DISP3) chr5 71461823 chr1 11388102 BND CALL_659_yG_25 FP call 0.0 0 0 312 7 hg19 5 70757650.0 1 11448159.0 0 7 UNEVALUABLE UNEVALUABLE
659_yG intergenic(KCNN2,TRIM36) CDKN2B chr5 114513678 chr9 22005113 BND CALL_659_yG_26 FP call 0.0 0 0 0 11 hg19 5 113849375.0 9 22005112.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG intergenic(SNCAIP,SNX2) NRG1 chr5 122574984 chr8 32706580 BND CALL_659_yG_27 FP call 0.0 0 0 5 0 hg19 5 121910679.0 8 32564098.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG intergenic(HLA-DRA,HLA-DRB5) HLA-DRB1 chr6 32473634 chr6 32589645 DEL CALL_659_yG_28 FP call 0.0146 1 0 208 1262 hg19 6 32441411.0 6 32557422.0 1 208 EVALUABLE BAM_AMBIGUOUS
659_yG intergenic(PREP,PRDM1) PRDM1 chr6 105991447 chr6 106096950 DUP CALL_659_yG_29 FP call 0.0038 0 0 0 2 hg19 6 106439322.0 6 106544825.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG intergenic(TRAF3IP2,FYN) RUNX1 chr6 111619429 chr21 34789585 BND CALL_659_yG_30 FP call 0.0001 0 0 28 0 hg19 6 111940632.0 21 36161882.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG FYN NOTCH2 chr6 111699517 chr1 119944623 BND CALL_659_yG_31 FP call 0.0001 0 0 975 5 hg19 6 112020720.0 1 120487246.0 0 5 UNEVALUABLE UNEVALUABLE
659_yG ETV1 intergenic(CDH19,DSEL) chr7 13972777 chr18 67067804 BND CALL_659_yG_32 FP call 0.0 0 0 8671 6 hg19 7 14012402.0 18 64735041.0 0 6 UNEVALUABLE UNEVALUABLE
659_yG intergenic(GLI3,C7orf25) ZBTB7A chr7 42889502 chr19 4046489 BND CALL_659_yG_33 FP call 0.0 0 0 0 1 hg19 7 42929101.0 19 4046487.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG GCK intergenic(WNT3A,ARF1) chr7 44146124 chr1 228068684 BND CALL_659_yG_34 FP call 0.0049 0 0 1830 2 hg19 7 44185723.0 1 228256385.0 0 2 UNEVALUABLE UNEVALUABLE
659_yG ZPBP PAX8 chr7 50023655 chr2 113220750 BND CALL_659_yG_35 FP call 0.0 0 0 4 43 hg19 7 50063251.0 2 113978327.0 0 4 UNEVALUABLE UNEVALUABLE
659_yG DLC1 intergenic(DLC1,SGCZ) chr8 13305279 chr8 14080245 DEL CALL_659_yG_36 FP call 0.0003 0 0 1513 0 hg19 8 13162788.0 8 13937754.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG NRG1 intergenic(NRG1,FUT10) chr8 32618584 chr8 32963956 DEL CALL_659_yG_37 FP call 0.0 0 0 1 1 hg19 8 32476102.0 8 32821474.0 0 1 UNEVALUABLE UNEVALUABLE
659_yG NRG1 CASK chr8 32719750 chrX 41818847 BND CALL_659_yG_38 FP call 0.0 0 0 1 1 hg19 8 32577268.0 X 41678100.0 0 1 UNEVALUABLE UNEVALUABLE
659_yG NRG1 intergenic(TYW3,LHX8) chr8 32748984 chr1 75041065 BND CALL_659_yG_39 FP call 0.0 0 0 70 0 hg19 8 32606502.0 1 75506749.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG intergenic(NRG1,FUT10) ERBB4 chr8 33202056 chr2 211379442 BND CALL_659_yG_40 FP call 0.0 0 0 0 1 hg19 8 33059574.0 2 212244167.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG KAT6A intergenic(SLC25A15,ELF1) chr8 41974795 chr13 40843578 BND CALL_659_yG_41 FP call 0.0 0 0 1049 2 hg19 8 41832313.0 13 41417714.0 0 2 UNEVALUABLE UNEVALUABLE
659_yG intergenic(CYP7B1,ARMC1) PAX3 chr8 64834853 chr2 222200372 BND CALL_659_yG_42 FP call 0.0 0 0 23 6 hg19 8 65747410.0 2 223065091.0 0 6 UNEVALUABLE UNEVALUABLE
659_yG intergenic(GATA3,CELF2) BCR chr10 10555730 chr22 23280962 BND CALL_659_yG_43 FP call 0.0 0 0 1 14827 hg19 10 10597693.0 22 23623149.0 0 1 UNEVALUABLE UNEVALUABLE
659_yG KIF5B PXK chr10 32021602 chr3 58351434 BND CALL_659_yG_44 FP call 0.0 0 0 587 6 hg19 10 32310530.0 3 58337161.0 0 6 UNEVALUABLE UNEVALUABLE
659_yG KIF5B MTREX chr10 32021608 chr5 55402873 BND CALL_659_yG_45 FP call 0.0012 0 0 586 3 hg19 10 32310536.0 5 54698701.0 0 3 UNEVALUABLE UNEVALUABLE
659_yG KIF5B CCDC102A chr10 32021608 chr16 57532699 BND CALL_659_yG_46 FP call 0.0001 0 0 586 0 hg19 10 32310536.0 16 57566611.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG KIF5B intergenic(FAM133A,DIAPH2) chr10 32021608 chrX 95650118 BND CALL_659_yG_47 FP call 0.0002 0 0 586 4 hg19 10 32310536.0 X 94905117.0 0 4 UNEVALUABLE UNEVALUABLE
659_yG PCDH15 KLHL28 chr10 54606717 chr14 44934177 BND CALL_659_yG_48 FP call 0.0002 0 0 0 1359 hg19 10 56366477.0 14 45403380.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG TET1 VPS26A chr10 68693016 chr10 69141267 DEL CALL_659_yG_49 FP call 0.0 0 0 2 0 hg19 10 70452773.0 10 70901023.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG intergenic(RGS10,TIAL1) RUNX1 chr10 119564275 chr21 34789585 BND CALL_659_yG_50 FP call 0.0 0 0 8 0 hg19 10 121323787.0 21 36161882.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG FGFR2 SLC6A20 chr10 121577242 chr3 45785571 BND CALL_659_yG_51 FP call 0.0 0 0 0 4 hg19 10 123336756.0 3 45827063.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG PRR5L XPO1 chr11 36420778 chr2 61537733 BND CALL_659_yG_52 FP call 0.0 0 0 11 10 hg19 11 36442328.0 2 61764868.0 0 10 UNEVALUABLE UNEVALUABLE
659_yG intergenic(RPS6KA4,SLC22A11) TALDO1 chr11 64373757 chr11 763864 BND CALL_659_yG_53 FP call 0.0004 0 0 7 2708 hg19 11 64141229.0 11 763864.0 0 7 UNEVALUABLE UNEVALUABLE
659_yG intergenic(MEN1,CDC42BPG) LIN54 chr11 64813860 chr4 82989458 BND CALL_659_yG_54 FP call 0.0001 0 0 28 9 hg19 11 64581332.0 4 83910611.0 0 9 UNEVALUABLE UNEVALUABLE
659_yG ENSG00000285827 KMT2A chr11 118427321 chr11 118525782 DUP CALL_659_yG_55 FP call 0.0 0 0 10 2 hg19 11 118298036.0 11 118396497.0 0 2 UNEVALUABLE UNEVALUABLE
659_yG RIMKLB FBXW7 chr12 8726871 chr4 152482526 BND CALL_659_yG_56 FP call 0.0 0 0 6 1 hg19 12 8879467.0 4 153403678.0 0 1 UNEVALUABLE UNEVALUABLE
659_yG intergenic(PPFIA2,CCDC59) MAX chr12 81933801 chr14 65102438 BND CALL_659_yG_57 FP call 0.0 0 0 4 4541 hg19 12 82327580.0 14 65569156.0 0 4 UNEVALUABLE UNEVALUABLE
659_yG COQ5 PAX8 chr12 120512063 chr2 113231027 BND CALL_659_yG_58 FP call 0.0 0 0 16 1 hg19 12 120949866.0 2 113988604.0 0 1 UNEVALUABLE UNEVALUABLE
659_yG BRCA2 intergenic(ZFAT,KHDRBS3) chr13 32344180 chr8 135027893 BND CALL_659_yG_59 FP call 0.0001 0 0 7757 2 hg19 13 32918317.0 8 136040136.0 0 2 UNEVALUABLE UNEVALUABLE
659_yG intergenic(TSC22D1,NUFIP1) NFIB chr13 44845567 chr9 14179755 BND CALL_659_yG_60 FP call 0.0001 0 0 9 550 hg19 13 45419703.0 9 14179754.0 0 9 UNEVALUABLE UNEVALUABLE
659_yG GPR135 CCDC175 chr14 59454276 chr14 59540729 DUP CALL_659_yG_61 FP call 0.0011 0 0 1 560 hg19 14 59920994.0 14 60007447.0 0 1 UNEVALUABLE UNEVALUABLE
659_yG MAX intergenic(TAC4,DLX4) chr14 65102438 chr17 49881445 BND CALL_659_yG_62 FP call 0.0001 0 0 4541 4 hg19 14 65569156.0 17 47958808.0 0 4 UNEVALUABLE UNEVALUABLE
659_yG EXD2 NRG1 chr14 69215299 chr8 32706580 BND CALL_659_yG_63 FP call 0.0001 0 0 7 0 hg19 14 69682016.0 8 32564098.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG NTRK3 ETV6 chr15 87974001 chr12 11877163 BND CALL_659_yG_64 TP_DUP call 0.9601 0 0 1 10400 hg19 15 88517232.0 12 12030097.0 0 1 UNEVALUABLE UNEVALUABLE
659_yG NTRK3 intergenic(TP53TG3F,IGHV3OR16-17) chr15 87995998 chr16 33675034 BND CALL_659_yG_65 FP call 0.0001 0 0 9 12 hg19 15 88539229.0 16 33477501.0 0 9 UNEVALUABLE UNEVALUABLE
659_yG LOXHD1 PTEN chr18 46479267 chr10 87971498 BND CALL_659_yG_66 FP call 0.0 0 0 2 0 hg19 18 44059230.0 10 89731255.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG intergenic(SERPINB8,CDH7) PAX5 chr18 65236054 chr9 36834373 BND CALL_659_yG_67 FP call 0.0 0 0 1 6 hg19 18 62903290.0 9 36834370.0 0 1 UNEVALUABLE UNEVALUABLE
659_yG intergenic(SOCS6,CBLN2) PPP6C chr18 71953439 chr9 125147782 BND CALL_659_yG_68 FP call 0.0001 0 0 12 0 hg19 18 69620675.0 9 127910061.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG intergenic(ZNF254,UQCRFS1) NRG1 chr19 28378890 chr8 32690880 BND CALL_659_yG_69 FP call 0.0 0 0 0 20 hg19 19 28869797.0 8 32548398.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG intergenic(JAG1,BTBD3) NTRK3 chr20 10828796 chr15 88072477 BND CALL_659_yG_70 FP call 0.0 0 0 1 4 hg19 20 10809444.0 15 88615708.0 0 1 UNEVALUABLE UNEVALUABLE
659_yG TM9SF4 intergenic(INHBA,GLI3) chr20 32128827 chr7 41710940 BND CALL_659_yG_71 FP call 0.0016 0 0 2 1 hg19 20 30716630.0 7 41750538.0 0 1 UNEVALUABLE UNEVALUABLE
659_yG STK4 STAT4 chr20 45055416 chr2 191146695 BND CALL_659_yG_72 FP call 0.0 0 0 17 1743 hg19 20 43684057.0 2 192011421.0 0 17 UNEVALUABLE UNEVALUABLE
659_yG EYA2 RUNX1 chr20 47156128 chr21 34789585 BND CALL_659_yG_73 FP call 0.0 0 0 4 0 hg19 20 45784767.0 21 36161882.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG RUNX1 intergenic(SLITRK1,SLITRK6) chr21 34789585 chr13 85386307 BND CALL_659_yG_74 FP call 0.0002 0 0 0 2 hg19 21 36161882.0 13 85960442.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG RUNX1 NLGN1 chr21 34789585 chr3 174107018 BND CALL_659_yG_75 FP call 0.0 0 0 0 2 hg19 21 36161882.0 3 173824808.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG intergenic(DCAF8L1,IL1RAPL1) EGFR chrX 28404368 chr7 55202942 BND CALL_659_yG_76 FP call 0.0001 0 0 0 18006 hg19 X 28422485.0 7 55270635.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG intergenic(EDA2R,AR) AR chrX 66869619 chrX 67686754 DEL CALL_659_yG_77 FP call 0.0001 0 0 0 70 hg19 X 66089461.0 X 66906596.0 0 0 UNEVALUABLE UNEVALUABLE
659_yG SEPTIN6 SVEP1 chrX 119690440 chr9 110429315 BND CALL_659_yG_78 FP call 0.0 0 0 5 877 hg19 X 118824403.0 9 113191595.0 0 5 UNEVALUABLE UNEVALUABLE
659_yG STPG2 MAP3K9 chr4 97241161 chr14 70733154 TRANSLOCATION TRUTH_659_yG_79 TRUTH truth 118.0 0 0 3 2233 hg19 4 98162312.0 14 71199871.0 0 3 UNEVALUABLE UNEVALUABLE
659_yG ETV6 NTRK3 chr12 11877162 chr15 87974000 TRANSLOCATION TRUTH_659_yG_80 TRUTH truth 106.0 0 0 10408 1 hg19 12 12030096.0 15 88517231.0 0 1 UNEVALUABLE UNEVALUABLE
659_bua NUP210L NTRK1 chr1 154045452 chr1 156874243 DUP CALL_659_bua_0 TP call 0.9785 0 0 48 22669 hg19 1 154017928.0 1 156844035.0 0 48 EVALUABLE BAM_REFUTED
659_bua TPM3 NTRK1 chr1 154158042 chr1 156874544 BND CALL_659_bua_1 TP call 0.9999 0 0 1 23855 hg19 1 154130518.0 1 156844336.0 0 1 UNEVALUABLE UNEVALUABLE
659_bua WWC1 RARS1 chr5 168454293 chr5 168488669 DUP CALL_659_bua_2 TP call 0.2857 0 0 1951 1004 hg19 5 167881298.0 5 167915674.0 0 1004 EVALUABLE BAM_REFUTED
659_bua WWC1 RARS1 chr5 168454292 chr5 168488668 DUPLICATION TRUTH_659_bua_3 TRUTH truth 91.0 0 0 1951 1004 hg19 5 167881297.0 5 167915673.0 0 1004 EVALUABLE BAM_REFUTED
659_bua TPM3 NTRK1 chr1 154158040 chr1 156874542 INVERSION TRUTH_659_bua_4 TRUTH truth 877.0 0 0 1 23863 hg19 1 154130516.0 1 156844334.0 0 1 UNEVALUABLE UNEVALUABLE
659_bua NUP210L NTRK1 chr1 154045451 chr1 156874242 DUPLICATION TRUTH_659_bua_5 TRUTH truth 619.0 0 0 48 22664 hg19 1 154017927.0 1 156844034.0 0 48 EVALUABLE BAM_REFUTED
659_dhR CAMTA1 SPTA1 chr1 6884291 chr1 158611166 DUP CALL_659_dhR_0 FP call 0.0002 0 0 11 2700 hg19 1 6944351.0 1.0 158580956.0 0 11 UNEVALUABLE UNEVALUABLE
659_dhR intergenic(C1orf127,TARDBP) NRG1 chr1 10986166 chr8 32640764 BND CALL_659_dhR_1 FP call 0.0 0 0 22 8 hg19 1 11046223.0 8.0 32498283.0 0 8 UNEVALUABLE UNEVALUABLE
659_dhR HSPG2 ZNF415 chr1 21847482 chr19 53120751 BND CALL_659_dhR_2 FP call 0.0289 0 0 2581 24 hg19 1 22173975.0 19.0 53624004.0 0 24 EVALUABLE BAM_REFUTED
659_dhR SHISAL2A ETV1 chr1 52646493 chr7 13978418 BND CALL_659_dhR_3 FP call 0.0 0 0 7 0 hg19 1 53112165.0 7.0 14018043.0 0 0 UNEVALUABLE UNEVALUABLE
659_dhR ODF2L intergenic(CLCA4,SH3GLB1) chr1 86352862 chr1 86585670 BND CALL_659_dhR_4 FP call 0.0958 0 0 320 0 hg19 1 86818545.0 1.0 87051353.0 0 0 UNEVALUABLE UNEVALUABLE
659_dhR intergenic(S1PR1,OLFM3) ETV1 chr1 101624850 chr7 13978418 BND CALL_659_dhR_5 FP call 0.0 0 0 2 0 hg19 1 102090406.0 7.0 14018043.0 0 0 UNEVALUABLE UNEVALUABLE
659_dhR intergenic(AMY1C,PRMT6) SPTA1 chr1 105863640 chr1 158611166 BND CALL_659_dhR_6 FP call 0.0 0 0 18 2700 hg19 1 106406262.0 1.0 158580956.0 0 18 UNEVALUABLE UNEVALUABLE
659_dhR SPTA1 AGBL3 chr1 158611166 chr7 135133068 BND CALL_659_dhR_7 FP call 0.0 0 0 2700 0 hg19 1 158580956.0 7.0 134817820.0 0 0 UNEVALUABLE UNEVALUABLE
659_dhR SPTA1 TMCO1 chr1 158611166 chr1 165746453 DEL CALL_659_dhR_8 FP call 0.0 0 0 2700 18 hg19 1 158580956.0 1.0 165715690.0 0 18 UNEVALUABLE UNEVALUABLE
659_dhR intergenic(TRIB2,LRATD1) BCL2 chr2 14272525 chr18 63128464 BND CALL_659_dhR_9 FP call 0.0 0 0 6 10371 hg19 2 14412649.0 18.0 60795697.0 0 6 UNEVALUABLE UNEVALUABLE
659_dhR GTF3C2 EIF2B4 chr2 27341987 chr2 27366638 DUP CALL_659_dhR_10 FP call 0.9442 0 0 1001 1907 hg19 2 27564854.0 2.0 27589505.0 0 1001 EVALUABLE BAM_REFUTED
659_dhR CCDC148 NCOA3 chr2 158207955 chr20 47654849 BND CALL_659_dhR_11 FP call 0.0 0 0 1 0 hg19 2 159064467.0 20.0 46283593.0 0 0 UNEVALUABLE UNEVALUABLE
659_dhR GLB1 SPTA1 chr3 33088369 chr1 158611166 BND CALL_659_dhR_12 FP call 0.0 0 0 3 2700 hg19 3 33129861.0 1.0 158580956.0 0 3 UNEVALUABLE UNEVALUABLE
659_dhR NBEAL2 HEMK1 chr3 47001973 chr3 50590163 BND CALL_659_dhR_13 TP call 0.585 0 0 5248 33 hg19 3 47043463.0 3.0 50627594.0 0 33 EVALUABLE BAM_REFUTED
659_dhR C3orf18 NBEAL2 chr3 50561386 chr3 46995811 BND CALL_659_dhR_14 TP_DUP call 0.0013 0 0 1488 6530 hg19 3 50598817.0 3.0 47037301.0 0 1488 EVALUABLE BAM_REFUTED
659_dhR intergenic(GPR149,MME) BCL2 chr3 154495725 chr18 63128464 BND CALL_659_dhR_15 FP call 0.0 0 0 14 10371 hg19 3 154213514.0 18.0 60795697.0 0 14 UNEVALUABLE UNEVALUABLE
659_dhR WDR49 HLA-A chr3 167504693 chr6 29945583 BND CALL_659_dhR_16 FP call 0.0 0 0 12 10285 hg19 3 167222481.0 6.0 29913360.0 0 12 UNEVALUABLE UNEVALUABLE
659_dhR MECOM SPTA1 chr3 169276998 chr1 158611166 BND CALL_659_dhR_17 FP call 0.0 0 0 2 2700 hg19 3 168994786.0 1.0 158580956.0 0 2 UNEVALUABLE UNEVALUABLE
659_dhR NLGN1 NCOA3 chr3 173765098 chr20 47654849 BND CALL_659_dhR_18 FP call 0.0 0 0 20 0 hg19 3 173482888.0 20.0 46283593.0 0 0 UNEVALUABLE UNEVALUABLE
659_dhR C4orf50 NCOA3 chr4 6169641 chr20 47654849 BND CALL_659_dhR_19 FP call 0.0 0 0 14 0 hg19 4 6171368.0 20.0 46283593.0 0 0 UNEVALUABLE UNEVALUABLE
659_dhR intergenic(FAT4,INTU) SPTA1 chr4 126342472 chr1 158611166 BND CALL_659_dhR_20 FP call 0.0 0 0 2 2700 hg19 4 127263627.0 1.0 158580956.0 0 2 UNEVALUABLE UNEVALUABLE
659_dhR intergenic(NR3C2,IQCM) TGFBR1 chr4 149211187 chr9 99151331 BND CALL_659_dhR_21 FP call 0.0 0 0 0 0 hg19 4 150132339.0 9.0 101913613.0 0 0 UNEVALUABLE UNEVALUABLE
659_dhR intergenic(RAPGEF2,FSTL5) SPTA1 chr4 160390599 chr1 158611166 BND CALL_659_dhR_22 FP call 0.0 0 0 0 2700 hg19 4 161311751.0 1.0 158580956.0 0 0 UNEVALUABLE UNEVALUABLE
659_dhR intergenic(DAP,CTNND2) IKZF3 chr5 10924723 chr17 39762033 BND CALL_659_dhR_23 FP call 0.0 0 0 0 15 hg19 5 10924835.0 17.0 37918286.0 0 0 UNEVALUABLE UNEVALUABLE
659_dhR intergenic(CDH10,CDH9) SPTA1 chr5 26661665 chr1 158611166 BND CALL_659_dhR_24 FP call 0.0 0 0 6 2700 hg19 5 26661774.0 1.0 158580956.0 0 6 UNEVALUABLE UNEVALUABLE
659_dhR intergenic(ANKRD55,MAP3K1) ETV1 chr5 56624720 chr7 13978418 BND CALL_659_dhR_25 FP call 0.0 0 0 23 0 hg19 5 55920547.0 7.0 14018043.0 0 0 UNEVALUABLE UNEVALUABLE
659_dhR intergenic(EDIL3,COX7C) NCOA3 chr5 86556544 chr20 47654849 BND CALL_659_dhR_26 FP call 0.0 0 0 16 0 hg19 5 85852361.0 20.0 46283593.0 0 0 UNEVALUABLE UNEVALUABLE
659_dhR intergenic(RIOK2,RGMB) ETV1 chr5 98037968 chr7 13978418 BND CALL_659_dhR_27 FP call 0.0 0 0 2 0 hg19 5 97373672.0 7.0 14018043.0 0 0 UNEVALUABLE UNEVALUABLE
659_dhR APC PLEC chr5 112826850 chr8 143927525 BND CALL_659_dhR_28 TP call 0.5248 0 0 2101 3206 hg19 5 112162547.0 8.0 145001693.0 0 2101 EVALUABLE BAM_REFUTED
659_dhR intergenic(FLT4,OR2Y1) ETV1 chr5 180663579 chr7 13978418 BND CALL_659_dhR_29 FP call 0.0 0 0 48 0 hg19 5 180090579.0 7.0 14018043.0 0 0 UNEVALUABLE UNEVALUABLE
659_dhR HLA-DRB5 MACROH2A2 chr6 32519402 chr10 70083479 BND CALL_659_dhR_30 FP call 0.0 0 0 362 0 hg19 6 32487179.0 10.0 71843235.0 0 0 UNEVALUABLE UNEVALUABLE
659_dhR SHPRH NCOA3 chr6 145864944 chr20 47654849 BND CALL_659_dhR_31 FP call 0.0 0 0 4 0 hg19 6 146186080.0 20.0 46283593.0 0 0 UNEVALUABLE UNEVALUABLE
659_dhR intergenic(MYL10,CUX1) SPTA1 chr7 101804466 chr1 158611166 BND CALL_659_dhR_32 FP call 0.0 0 0 8 2700 hg19 7 101447746.0 1.0 158580956.0 0 8 UNEVALUABLE UNEVALUABLE
659_dhR intergenic(LINGO2,ACO1) PAX3 chr9 30709796 chr2 222216721 BND CALL_659_dhR_33 FP call 0.0 0 0 4 12578 hg19 9 30709794.0 2.0 223081440.0 0 4 UNEVALUABLE UNEVALUABLE
659_dhR intergenic(TLE4,TLE1) SPTA1 chr9 80897913 chr1 158611166 BND CALL_659_dhR_34 FP call 0.0 0 0 0 2700 hg19 9 83512828.0 1.0 158580956.0 0 0 UNEVALUABLE UNEVALUABLE
659_dhR CDC14B NCOA3 chr9 96603156 chr20 47654850 BND CALL_659_dhR_35 FP call 0.0 0 0 0 0 hg19 9 99365438.0 20.0 46283594.0 0 0 UNEVALUABLE UNEVALUABLE
659_dhR CTSV SPTA1 chr9 97099365 chr1 158611166 BND CALL_659_dhR_36 FP call 0.0 0 0 16 2700 hg19 9 99861647.0 1.0 158580956.0 0 16 UNEVALUABLE UNEVALUABLE
659_dhR intergenic(SLC5A12,FIBIN) ETV1 chr11 26910734 chr7 13978417 BND CALL_659_dhR_37 FP call 0.0 0 0 9 0 hg19 11 26932281.0 7.0 14018042.0 0 0 UNEVALUABLE UNEVALUABLE
659_dhR intergenic(OR4C12,OR4C45) DGKZ chr11 50002220 chr11 46371539 BND CALL_659_dhR_38 TP_DUP call 0.9861 0 0 1 2198 hg19 11 50023759.0 11.0 46393089.0 0 1 UNEVALUABLE UNEVALUABLE
659_dhR intergenic(ENSG00000197991,ENSG00000237378) SPTA1 chr13 62705339 chr1 158611166 BND CALL_659_dhR_39 FP call 0.0 0 0 0 2700 hg19 13 63279472.0 1.0 158580956.0 0 0 UNEVALUABLE UNEVALUABLE
659_dhR intergenic(LMO7,KCTD12) IGF1 chr13 76194763 chr12 102417639 BND CALL_659_dhR_40 FP call 0.0 0 0 24 2113 hg19 13 76768899.0 12.0 102811417.0 0 24 EVALUABLE BAM_REFUTED
659_dhR HEATR5A FGF14 chr14 31359320 chr13 101718247 BND CALL_659_dhR_41 FP call 0.0 0 0 1080 1 hg19 14 31828526.0 13.0 102370597.0 0 1 UNEVALUABLE UNEVALUABLE
659_dhR ABHD2 SPTA1 chr15 89149215 chr1 158611166 BND CALL_659_dhR_42 FP call 0.0 0 0 1 2700 hg19 15 89692446.0 1.0 158580956.0 0 1 UNEVALUABLE UNEVALUABLE
659_dhR intergenic(CDIP1,C16orf96) SPTA1 chr16 4555270 chr1 158611166 BND CALL_659_dhR_43 FP call 0.0 0 0 31 2700 hg19 16 4605271.0 1.0 158580956.0 0 31 EVALUABLE BAM_REFUTED
659_dhR intergenic(GOT2,CDH8) ETV1 chr16 59697193 chr7 13978418 BND CALL_659_dhR_44 FP call 0.0 0 0 6 0 hg19 16 59731097.0 7.0 14018043.0 0 0 UNEVALUABLE UNEVALUABLE
659_dhR intergenic(CCL23,CCL18) ETV1 chr17 36046064 chr7 13978418 BND CALL_659_dhR_45 FP call 0.0 0 0 12 0 hg19 17 34373097.0 7.0 14018043.0 0 0 UNEVALUABLE UNEVALUABLE
659_dhR TUBG1 intergenic(TUBG1,TUBG2) chr17 42610200 chr17 42649830 DEL CALL_659_dhR_46 FP call 0.2916 0 0 2918 44 hg19 17 40762218.0 17.0 40801848.0 0 44 EVALUABLE BAM_REFUTED
659_dhR intergenic(TUBG1,TUBG2) TUBG2 chr17 42649830 chr17 42659926 DUP CALL_659_dhR_47 FP call 0.3574 0 0 44 2212 hg19 17 40801848.0 17.0 40811944.0 0 44 EVALUABLE BAM_REFUTED
659_dhR BRCA1 TMEM106A chr17 43049169 chr17 43215043 DEL CALL_659_dhR_48 TP call 0.7852 0 0 10281 24 hg19 17 41201186.0 17.0 41367062.0 0 24 EVALUABLE BAM_REFUTED
659_dhR CARD14 SLC26A11 chr17 80211700 chr17 80221687 BND CALL_659_dhR_49 TP call 0.9491 0 0 913 1363 hg19 17 78185499.0 17.0 78195486.0 0 913 EVALUABLE BAM_REFUTED
659_dhR BCL2 GABRB3 chr18 63128464 chr15 26802691 BND CALL_659_dhR_50 FP call 0.0 0 0 10371 10 hg19 18 60795697.0 15.0 27047838.0 0 10 UNEVALUABLE UNEVALUABLE
659_dhR intergenic(RTTN,SOCS6) SPTA1 chr18 70229433 chr1 158611166 BND CALL_659_dhR_51 FP call 0.0 0 0 71 2700 hg19 18 67896669.0 1.0 158580956.0 0 71 EVALUABLE BAM_REFUTED
659_dhR intergenic(OR7A17,OR7C2) SPTA1 chr19 14908357 chr1 158611166 BND CALL_659_dhR_52 FP call 0.0 0 0 14 2700 hg19 19 15019169.0 1.0 158580956.0 0 14 UNEVALUABLE UNEVALUABLE
659_dhR CYP4F12 LRRTM4 chr19 15684869 chr2 76814910 BND CALL_659_dhR_53 FP call 0.0 0 0 2118 0 hg19 19 15795679.0 2.0 77042036.0 0 0 UNEVALUABLE UNEVALUABLE
659_dhR KCNN1 RNF157 chr19 17981854 chr17 76193196 BND CALL_659_dhR_54 TP_DUP call 0.9164 0 0 2202 0 hg19 19 18092663.0 17.0 74189277.0 0 0 UNEVALUABLE UNEVALUABLE
659_dhR intergenic(JAG1,BTBD3) SPTA1 chr20 11351406 chr1 158611166 BND CALL_659_dhR_55 FP call 0.0 0 0 7 2700 hg19 20 11332054.0 1.0 158580956.0 0 7 UNEVALUABLE UNEVALUABLE
659_dhR CDH4 FGF14 chr20 61692134 chr13 101718215 BND CALL_659_dhR_56 FP call 0.0 0 0 1 1 hg19 20 60267190.0 13.0 102370565.0 0 1 UNEVALUABLE UNEVALUABLE
659_dhR BEND2 ETV1 chrX 18194973 chr7 13978418 BND CALL_659_dhR_57 FP call 0.0 0 0 1003 0 hg19 X 18213093.0 7.0 14018043.0 0 0 UNEVALUABLE UNEVALUABLE
659_dhR intergenic(NDP,EFHC2) NCOA3 chrX 44135861 chr20 47654849 BND CALL_659_dhR_58 FP call 0.0 0 0 37 0 hg19 X 43995107.0 20.0 46283593.0 0 0 UNEVALUABLE UNEVALUABLE
659_dhR PCDH11X SPTA1 chrX 92613584 chr1 158611166 BND CALL_659_dhR_59 FP call 0.0 0 0 4 2700 hg19 X 91868583.0 1.0 158580956.0 0 4 UNEVALUABLE UNEVALUABLE
659_dhR intergenic(FAM133A,DIAPH2) SPTA1 chrX 96549490 chr1 158611165 BND CALL_659_dhR_60 FP call 0.0 0 0 16 2700 hg19 X 95804489.0 1.0 158580955.0 0 16 UNEVALUABLE UNEVALUABLE
659_dhR intergenic(IGSF1,STK26) SPTA1 chrX 131824805 chr1 158611165 BND CALL_659_dhR_61 FP call 0.0 0 0 10 2700 hg19 X 130958833.0 1.0 158580955.0 0 10 UNEVALUABLE UNEVALUABLE
659_dhR intergenic(.,.) CACNA1B chr9_KI270719v1_random 147897 chr9 137955810 BND CALL_659_dhR_62 FP call 0.9286 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_dhR NBEAL2 C3orf18 chr3 46995808 chr3 50561385 INVERSION TRUTH_659_dhR_63 TRUTH truth 204.0 0 0 6532 1491 hg19 3 47037298.0 3.0 50598816.0 0 1491 EVALUABLE BAM_REFUTED
659_dhR NBEAL2 HEMK1 chr3 47001972 chr3 50590162 INVERSION TRUTH_659_dhR_64 TRUTH truth 32.0 0 0 5246 33 hg19 3 47043462.0 3.0 50627593.0 0 33 EVALUABLE BAM_REFUTED
659_dhR APC PLEC chr5 112826849 chr8 143927523 TRANSLOCATION TRUTH_659_dhR_65 TRUTH truth 30.0 0 0 2100 3206 hg19 5 112162546.0 8.0 145001691.0 0 2100 EVALUABLE BAM_REFUTED
659_dhR DGKZ intergenic(OR4C12,OR4C45) chr11 46371538 chr11 50002219 INVERSION TRUTH_659_dhR_66 TRUTH truth 107.0 0 0 2198 1 hg19 11 46393088.0 11.0 50023758.0 0 1 UNEVALUABLE UNEVALUABLE
659_dhR BRCA1 TMEM106A chr17 43049168 chr17 43215042 DELETION TRUTH_659_dhR_67 TRUTH truth 293.0 0 0 10273 24 hg19 17 41201185.0 17.0 41367061.0 0 24 EVALUABLE BAM_REFUTED
659_dhR RNF157 KCNN1 chr17 76193192 chr19 17981853 TRANSLOCATION TRUTH_659_dhR_68 TRUTH truth 108.0 0 0 0 2202 hg19 17 74189273.0 19.0 18092662.0 0 0 UNEVALUABLE UNEVALUABLE
659_dhR CARD14 SLC26A11 chr17 80211698 chr17 80221685 INVERSION TRUTH_659_dhR_69 TRUTH truth 161.0 0 0 915 1363 hg19 17 78185497.0 17.0 78195484.0 0 915 EVALUABLE BAM_REFUTED
659_dm4 FBXO42 NTRK3 chr1 16270792 chr15 87987474 BND CALL_659_dm4_0 FP call 0.0 0 0 41 0 hg19 1 16597287.0 15 88530705.0 0 0 UNEVALUABLE UNEVALUABLE
659_dm4 DYSF HLA-DRB1 chr2 71603520 chr6 32579044 BND CALL_659_dm4_1 FP call 0.0 0 0 43 6040 hg19 2 71830650.0 6 32546821.0 0 43 EVALUABLE BAM_REFUTED
659_dm4 HECW2 ETV1 chr2 196491370 chr7 13978418 BND CALL_659_dm4_2 FP call 0.0 0 0 0 3 hg19 2 197356094.0 7 14018043.0 0 0 UNEVALUABLE UNEVALUABLE
659_dm4 intergenic(IL1RAP,GMNC) BCL2 chr3 190776128 chr18 63128442 BND CALL_659_dm4_3 FP call 0.0 0 0 4 14780 hg19 3 190493917.0 18 60795675.0 0 4 UNEVALUABLE UNEVALUABLE
659_dm4 intergenic(H3Y1,CDH18) FGF14 chr5 18412824 chr13 101718219 BND CALL_659_dm4_4 FP call 0.0 0 0 4 0 hg19 5 18412933.0 13 102370569.0 0 0 UNEVALUABLE UNEVALUABLE
659_dm4 CHCHD3 ARHGAP35 chr7 132955174 chr19 47003919 BND CALL_659_dm4_5 FP call 0.0 0 0 16 4 hg19 7 132639934.0 19 47507176.0 0 4 UNEVALUABLE UNEVALUABLE
659_dm4 intergenic(OSTF1,PCSK5) ETV1 chr9 75334122 chr7 13978418 BND CALL_659_dm4_6 FP call 0.0 0 0 6 3 hg19 9 77949038.0 7 14018043.0 0 3 UNEVALUABLE UNEVALUABLE
659_dm4 ANK3 SSH2 chr10 60646099 chr17 29636370 BND CALL_659_dm4_7 FP call 0.0001 0 0 10 3129 hg19 10 62405857.0 17 27963388.0 0 10 UNEVALUABLE UNEVALUABLE
659_dm4 intergenic(LUZP2,ANO3) NTRK3 chr11 25905014 chr15 87987474 BND CALL_659_dm4_8 FP call 0.0 0 0 4 0 hg19 11 25926561.0 15 88530705.0 0 0 UNEVALUABLE UNEVALUABLE
659_dm4 ENDOD1 ETV1 chr11 95122590 chr7 13978418 BND CALL_659_dm4_9 FP call 0.0 0 0 26 3 hg19 11 94855754.0 7 14018043.0 0 3 UNEVALUABLE UNEVALUABLE
659_dm4 intergenic(DCN,BTG1) NTRK3 chr12 91277421 chr15 87953936 BND CALL_659_dm4_10 FP call 0.0 0 0 18 23 hg19 12 91671198.0 15 88497167.0 0 18 UNEVALUABLE UNEVALUABLE
659_dm4 POLE2 ETV1 chr14 49655459 chr7 13978418 BND CALL_659_dm4_11 FP call 0.0 0 0 809 3 hg19 14 50122177.0 7 14018043.0 0 3 UNEVALUABLE UNEVALUABLE
659_dm4 NUMB CUL2 chr14 73380464 chr10 35063012 BND CALL_659_dm4_12 FP call 0.0009 0 0 19 380 hg19 14 73847172.0 10 35351940.0 0 19 UNEVALUABLE UNEVALUABLE
659_dm4 STARD9 ETV1 chr15 42664790 chr7 13978418 BND CALL_659_dm4_13 FP call 0.0001 0 0 300 3 hg19 15 42956988.0 7 14018043.0 0 3 UNEVALUABLE UNEVALUABLE
659_dm4 SMAD3 TP53 chr15 67139574 chr17 7673534 BND CALL_659_dm4_14 FP call 0.0001 0 0 12 4818 hg19 15 67431912.0 17 7576852.0 0 12 UNEVALUABLE UNEVALUABLE
659_dm4 TMED3 ETV1 chr15 79387595 chr7 13978417 BND CALL_659_dm4_15 FP call 0.0003 0 0 0 3 hg19 15 79679937.0 7 14018042.0 0 0 UNEVALUABLE UNEVALUABLE
659_dm4 MAP2K4 SMAD3 chr17 12096904 chr15 67139575 BND CALL_659_dm4_16 FP call 0.0233 0 0 2 12 hg19 17 12000221.0 15 67431913.0 0 2 UNEVALUABLE UNEVALUABLE
659_dm4 FBXW10B FLCN chr17 15591988 chr17 17232276 BND CALL_659_dm4_17 FP call 0.0 0 0 9 4 hg19 17 15495302.0 17 17135590.0 0 4 UNEVALUABLE UNEVALUABLE
659_dm4 TRIM37 ETV1 chr17 59007159 chr7 13978418 BND CALL_659_dm4_18 FP call 0.0 0 0 15 3 hg19 17 57084520.0 7 14018043.0 0 3 UNEVALUABLE UNEVALUABLE
659_dm4 DNM2 ETV1 chr19 10794378 chr7 13978418 BND CALL_659_dm4_19 FP call 0.0001 0 0 722 3 hg19 19 10905054.0 7 14018043.0 0 3 UNEVALUABLE UNEVALUABLE
659_dm4 intergenic(ZNF254,UQCRFS1) ETV1 chr19 28613525 chr7 13978417 BND CALL_659_dm4_20 FP call 0.0002 0 0 16 3 hg19 19 29104432.0 7 14018042.0 0 3 UNEVALUABLE UNEVALUABLE
659_dm4 ERG TMPRSS2 chr21 38458443 chr21 41502921 DEL CALL_659_dm4_21 FP call 0.0001 0 0 25 14261 hg19 21 39830366.0 21 42874848.0 0 25 EVALUABLE BAM_REFUTED
659_dm4 intergenic(TMPRSS2,RIPK4) TMPRSS2 chr21 41598648 chr21 41502901 BND CALL_659_dm4_22 FP call 0.0007 0 0 2 14263 hg19 21 43018808.0 21 42874828.0 0 2 UNEVALUABLE UNEVALUABLE
659_dm4 SLC9A6 PRUNE2 chrX 136002168 chr9 76811792 BND CALL_659_dm4_23 FP call 0.0004 0 0 278 0 hg19 X 135084327.0 9 79426708.0 0 0 UNEVALUABLE UNEVALUABLE
659_eHK GORASP2 MLLT3 chr2 170963433 chr9 20414402 BND CALL_659_eHK_0 FP call 0.0 0 0 326 3167 hg19 2.0 171819943.0 9.0 20414400.0 0 326 EVALUABLE BAM_REFUTED
659_eHK ZNF718 PAX8 chr4 156830 chr2 113238800 BND CALL_659_eHK_1 FP call 0.0 0 0 2 9 hg19 4.0 150628.0 2.0 113996377.0 0 2 UNEVALUABLE UNEVALUABLE
659_eHK H2BC4 H3C6 chr6 26117841 chr6 26225234 DUP CALL_659_eHK_2 FP call 0.0024 0 0 1 3099 hg19 6.0 26118069.0 6.0 26225462.0 0 1 UNEVALUABLE UNEVALUABLE
659_eHK RUNX2 TBP chr6 45422681 chr6 170562015 DUP CALL_659_eHK_3 FP call 0.0001 0 0 2286 3422 hg19 6.0 45390418.0 6.0 170871103.0 0 2286 EVALUABLE BAM_REFUTED
659_eHK SMARCA2 TCF4 chr9 2039765 chr18 55586229 BND CALL_659_eHK_4 FP call 0.0 0 0 1753 2163 hg19 9.0 2039765.0 18.0 53253460.0 0 1753 EVALUABLE BAM_REFUTED
659_eHK MLLT3 intergenic(ARGLU1,NALF1) chr9 20414280 chr13 106714801 BND CALL_659_eHK_5 FP call 0.0 0 0 3529 12 hg19 9.0 20414278.0 13.0 107367149.0 0 12 UNEVALUABLE UNEVALUABLE
659_eHK MLLT3 AGBL1 chr9 20414280 chr15 86931616 BND CALL_659_eHK_6 FP call 0.0 0 0 3529 1 hg19 9.0 20414278.0 15.0 87474847.0 0 1 UNEVALUABLE UNEVALUABLE
659_eHK MLLT3 ATXN2 chr9 20414402 chr12 111598950 BND CALL_659_eHK_7 FP call 0.0 0 0 3167 3885 hg19 9.0 20414400.0 12.0 112036754.0 0 3167 EVALUABLE BAM_REFUTED
659_eHK HIF1AN intergenic(TIAL1,BAG3) chr10 100540725 chr10 119625428 DUP CALL_659_eHK_8 FP call 0.0053 0 0 818 15 hg19 10.0 102300482.0 10.0 121384940.0 0 15 UNEVALUABLE UNEVALUABLE
659_eHK intergenic(CACUL1,NANOS1) GHDC chr10 118977043 chr17 42190233 BND CALL_659_eHK_9 TP call 0.9587 0 0 2 2889 hg19 10.0 120736555.0 17.0 40342251.0 0 2 UNEVALUABLE UNEVALUABLE
659_eHK APOA5 FEZ1 chr11 116790452 chr11 125579977 BND CALL_659_eHK_10 TP call 0.9928 0 0 5104 484 hg19 11.0 116661168.0 11.0 125449873.0 0 484 EVALUABLE BAM_REFUTED
659_eHK OR8G2P intergenic(OR8G2P,OR8G1) chr11 124224804 chr11 124238532 DUP CALL_659_eHK_11 FP call 0.0005 0 1 3560 541 hg19 11.0 124095509.0 11.0 124109233.0 1 541 EVALUABLE BAM_AMBIGUOUS
659_eHK ATXN2 TCF4 chr12 111599017 chr18 55586229 BND CALL_659_eHK_12 FP call 0.0 0 0 3730 2163 hg19 12.0 112036821.0 18.0 53253460.0 0 2163 EVALUABLE BAM_REFUTED
659_eHK TP53 APPBP2 chr17 7675261 chr17 60486415 DUP CALL_659_eHK_13 TP call 0.4209 0 0 6965 3 hg19 17.0 7578579.0 17.0 58563776.0 0 3 UNEVALUABLE UNEVALUABLE
659_eHK TP53 intergenic(HPS6,LDB1) chr17 7685801 chr10 102103274 BND CALL_659_eHK_14 FP call 0.9947 0 0 4 16 hg19 17.0 7589119.0 10.0 103863031.0 0 4 UNEVALUABLE UNEVALUABLE
659_eHK WRAP53 TP53 chr17 7687784 chr17 7676061 BND CALL_659_eHK_15 TP_DUP call 0.628 0 0 2 6488 hg19 17.0 7591102.0 17.0 7579379.0 0 2 UNEVALUABLE UNEVALUABLE
659_eHK GREB1L intergenic(KCTD1,AQP4) chr18 21490336 chr18 26772326 DEL CALL_659_eHK_16 FP call 0.0017 0 0 0 2 hg19 18.0 19070297.0 18.0 24352290.0 0 0 UNEVALUABLE UNEVALUABLE
659_eHK intergenic(ONECUT2,FECH) MKLN1 chr18 57538523 chr7 131487924 BND CALL_659_eHK_17 FP call 0.0 0 0 0 959 hg19 18.0 55205755.0 7.0 131172683.0 0 0 UNEVALUABLE UNEVALUABLE
659_eHK intergenic(OTOR,PCSK2) ADRA1D chr20 17096073 chr20 4222079 BND CALL_659_eHK_18 TP_DUP call 0.7743 0 0 0 3763 hg19 20.0 17076718.0 20.0 4202726.0 0 0 UNEVALUABLE UNEVALUABLE
659_eHK CECR2 intergenic(APOL4,APOL2) chr22 17548635 chr22 36207275 DUP CALL_659_eHK_19 TP call 0.5207 0 0 5435 2 hg19 22.0 18028325.0 22.0 36603321.0 0 2 UNEVALUABLE UNEVALUABLE
659_eHK intergenic(.,.) MUC3A chrUn_JTFH01000054v1_decoy 3130 chr7 100952833 BND CALL_659_eHK_20 FP call 0.0325 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_eHK intergenic(CACUL1,NANOS1) GHDC chr10 118977042 chr17 42190232 TRANSLOCATION TRUTH_659_eHK_21 TRUTH truth 73.0 0 0 2 2885 hg19 10.0 120736554.0 17.0 40342250.0 0 2 UNEVALUABLE UNEVALUABLE
659_eHK APOA5 FEZ1 chr11 116790450 chr11 125579975 INVERSION TRUTH_659_eHK_22 TRUTH truth 267.0 0 0 5097 484 hg19 11.0 116661166.0 11.0 125449871.0 0 484 EVALUABLE BAM_REFUTED
659_eHK TP53 APPBP2 chr17 7675260 chr17 60486414 DUPLICATION TRUTH_659_eHK_23 TRUTH truth 216.0 0 0 6965 3 hg19 17.0 7578578.0 17.0 58563775.0 0 3 UNEVALUABLE UNEVALUABLE
659_eHK TP53 WRAP53 chr17 7676135 chr17 7687801 INVERSION TRUTH_659_eHK_24 TRUTH truth 814.0 0 0 6540 2 hg19 17.0 7579453.0 17.0 7591119.0 0 2 UNEVALUABLE UNEVALUABLE
659_eHK ADRA1D intergenic(OTOR,PCSK2) chr20 4222078 chr20 17096072 INVERSION TRUTH_659_eHK_25 TRUTH truth 224.0 0 0 3768 0 hg19 20.0 4202725.0 20.0 17076717.0 0 0 UNEVALUABLE UNEVALUABLE
659_eHK CECR2 intergenic(APOL4,APOL2) chr22 17548634 chr22 36207274 DUPLICATION TRUTH_659_eHK_26 TRUTH truth 165.0 0 0 5430 2 hg19 22.0 18028324.0 22.0 36603320.0 0 2 UNEVALUABLE UNEVALUABLE
659_Cc SLC5A6 AKAP14 chr2 27202909 chrX 119914770 BND CALL_659_Cc_0 FP call 0.0003 0 0 1941 627 hg19 2 27425777.0 X 119048733.0 0 627 EVALUABLE BAM_REFUTED
659_Cc PMS1 intergenic(AVPR1A,DPY19L2) chr2 189823545 chr12 63510898 BND CALL_659_Cc_1 FP call 0.0004 0 0 3 3 hg19 2 190688271.0 12 63904678.0 0 3 UNEVALUABLE UNEVALUABLE
659_Cc intergenic(SLC4A3,EPHA4) GID4 chr2 219781606 chr17 18066485 BND CALL_659_Cc_2 FP call 0.0 0 0 0 2 hg19 2 220646328.0 17 17969799.0 0 0 UNEVALUABLE UNEVALUABLE
659_Cc GRAMD1C NRG1 chr3 113829284 chr8 32653132 BND CALL_659_Cc_3 FP call 0.0 0 0 0 0 hg19 3 113548131.0 8 32510651.0 0 0 UNEVALUABLE UNEVALUABLE
659_Cc POLQ GREB1L chr3 121431624 chr18 21350374 BND CALL_659_Cc_4 FP call 0.0 0 0 152 16 hg19 3 121150471.0 18 18930335.0 0 16 UNEVALUABLE UNEVALUABLE
659_Cc intergenic(PCDH7,ARAP2) CCND1 chr4 33276329 chr11 69652769 BND CALL_659_Cc_5 FP call 0.0013 0 0 1 1 hg19 4 33277951.0 11 69467537.0 0 1 UNEVALUABLE UNEVALUABLE
659_Cc ELOVL6 GID4 chr4 110147818 chr17 18066485 BND CALL_659_Cc_6 FP call 0.0 0 0 40 2 hg19 4 111068974.0 17 17969799.0 0 2 UNEVALUABLE UNEVALUABLE
659_Cc SMAD1 GID4 chr4 145528103 chr17 18066485 BND CALL_659_Cc_7 FP call 0.0 0 0 18 2 hg19 4 146449255.0 17 17969799.0 0 2 UNEVALUABLE UNEVALUABLE
659_Cc intergenic(IRX1,ADAMTS16) BCL2 chr5 4516333 chr18 63128494 BND CALL_659_Cc_8 FP call 0.0 0 0 3 12658 hg19 5 4516446.0 18 60795727.0 0 3 UNEVALUABLE UNEVALUABLE
659_Cc CDH12 CDC73 chr5 22639346 chr1 193251968 BND CALL_659_Cc_9 FP call 0.0 0 0 14 1 hg19 5 22639455.0 1 193221098.0 0 1 UNEVALUABLE UNEVALUABLE
659_Cc intergenic(CD180,PIK3R1) GID4 chr5 67317792 chr17 18066485 BND CALL_659_Cc_10 FP call 0.0 0 0 8 2 hg19 5 66613620.0 17 17969799.0 0 2 UNEVALUABLE UNEVALUABLE
659_Cc ENSG00000282218 PECAM1 chr6 117321697 chr17 64325766 BND CALL_659_Cc_11 FP call 0.0 0 0 10115 18 hg19 6 117642860.0 17 62403126.0 0 18 UNEVALUABLE UNEVALUABLE
659_Cc PNLDC1 ABHD16B chr6 159817712 chr20 63862717 BND CALL_659_Cc_12 FP call 0.0001 0 0 158 5508 hg19 6 160238744.0 20 62494070.0 0 158 EVALUABLE BAM_REFUTED
659_Cc intergenic(ZNF804B,STEAP1) NTRK2 chr7 89695880 chr9 84879168 BND CALL_659_Cc_13 FP call 0.0001 0 0 1 2 hg19 7 89325194.0 9 87494083.0 0 1 UNEVALUABLE UNEVALUABLE
659_Cc intergenic(NSMAF,TOX) NRG1 chr8 58775519 chr8 32738386 BND CALL_659_Cc_14 FP call 0.0 0 0 1 4 hg19 8 59688078.0 8 32595904.0 0 1 UNEVALUABLE UNEVALUABLE
659_Cc intergenic(GRIN3A,CYLC2) ETV6 chr9 102509676 chr12 11893842 BND CALL_659_Cc_15 FP call 0.0005 0 0 3 0 hg19 9 105271958.0 12 12046776.0 0 0 UNEVALUABLE UNEVALUABLE
659_Cc intergenic(TMEM38B,ZNF462) ETV1 chr9 105974104 chr7 13978418 BND CALL_659_Cc_16 FP call 0.0001 0 0 1 4 hg19 9 108736385.0 7 14018043.0 0 1 UNEVALUABLE UNEVALUABLE
659_Cc KIAA1958 CRKL chr9 112521197 chr22 20953455 BND CALL_659_Cc_17 FP call 0.0 0 0 2 0 hg19 9 115283477.0 22 21307743.0 0 0 UNEVALUABLE UNEVALUABLE
659_Cc CCDC7 TTC5 chr10 32518472 chr14 20281467 BND CALL_659_Cc_18 FP call 0.0001 0 0 1718 1 hg19 10 32807400.0 14 20749626.0 0 1 UNEVALUABLE UNEVALUABLE
659_Cc ZNF202 intergenic(TXLNB,CITED2) chr11 123726646 chr6 139345112 BND CALL_659_Cc_19 FP call 0.0 0 0 5971 0 hg19 11 123597354.0 6 139666249.0 0 0 UNEVALUABLE UNEVALUABLE
659_Cc intergenic(CRYL1,IFT88) EIF2D chr13 20545552 chr1 206597161 BND CALL_659_Cc_20 FP call 0.0001 0 0 6 647 hg19 13 21119691.0 1 206770511.0 0 6 UNEVALUABLE UNEVALUABLE
659_Cc TOX4 CHD2 chr14 21479085 chr15 93009249 BND CALL_659_Cc_21 FP call 0.0 0 0 35 3877 hg19 14 21947244.0 15 93552479.0 0 35 EVALUABLE BAM_REFUTED
659_Cc NTRK3 ADGRV1 chr15 87987526 chr5 90788873 BND CALL_659_Cc_22 FP call 0.0 0 0 1 133 hg19 15 88530757.0 5 90084690.0 0 1 UNEVALUABLE UNEVALUABLE
659_Cc NTRK3 ETV1 chr15 88240074 chr7 13932038 BND CALL_659_Cc_23 FP call 0.0 0 0 0 4327 hg19 15 88783305.0 7 13971663.0 0 0 UNEVALUABLE UNEVALUABLE
659_Cc intergenic(CDH8,CDH11) PPARG chr16 63770949 chr3 12351419 BND CALL_659_Cc_24 FP call 0.0 0 0 2 4125 hg19 16 63804853.0 3 12392918.0 0 2 UNEVALUABLE UNEVALUABLE
659_Cc ZFHX3 HNRNPA2B1 chr16 72786153 chr7 26173683 BND CALL_659_Cc_25 FP call 0.0 0 0 1 0 hg19 16 72820052.0 7 26213303.0 0 0 UNEVALUABLE UNEVALUABLE
659_Cc GID4 intergenic(MSRB3,HMGA2) chr17 18066485 chr12 65702340 BND CALL_659_Cc_26 FP call 0.0 0 0 2 45 hg19 17 17969799.0 12 66096120.0 0 2 UNEVALUABLE UNEVALUABLE
659_Cc GID4 intergenic(RGS9,AXIN2) chr17 18066485 chr17 65261967 DEL CALL_659_Cc_27 FP call 0.0 0 0 2 1 hg19 17 17969799.0 17 63258085.0 0 1 UNEVALUABLE UNEVALUABLE
659_Cc intergenic(CDH7,CDH19) MKLN1 chr18 66279546 chr7 131496435 BND CALL_659_Cc_28 FP call 0.0 0 0 0 4 hg19 18 63946783.0 7 131181194.0 0 0 UNEVALUABLE UNEVALUABLE
659_Cc intergenic(APBA3,MRPL54) ABCA2 chr19 3761889 chr9 137015415 BND CALL_659_Cc_29 FP call 0.0 0 0 2 5332 hg19 19 3761887.0 9 139909867.0 0 2 UNEVALUABLE UNEVALUABLE
659_Cc intergenic(CYP2S1,AXL) CCDC97 chr19 41218282 chr19 41322598 BND CALL_659_Cc_30 FP call 0.001 0 0 2 1460 hg19 19 41724187.0 19 41828503.0 0 2 UNEVALUABLE UNEVALUABLE
659_Cc intergenic(CD93,NXT1) GID4 chr20 23148896 chr17 18066485 BND CALL_659_Cc_31 FP call 0.0 0 0 1 2 hg19 20 23129533.0 17 17969799.0 0 1 UNEVALUABLE UNEVALUABLE
659_Cc CRKL intergenic(BBX,CD47) chr22 20950395 chr3 107829218 BND CALL_659_Cc_32 FP call 0.0 0 0 1162 12 hg19 22 21304683.0 3 107548065.0 0 12 UNEVALUABLE UNEVALUABLE
659_Cc APOL6 ADAM9 chr22 35659582 chr8 39063852 BND CALL_659_Cc_33 FP call 0.0 0 0 4497 5 hg19 22 36055629.0 8 38921371.0 0 5 UNEVALUABLE UNEVALUABLE
659_Cc intergenic(TSPY10,USP9Y) NTRK3 chrY 9627560 chr15 87987526 BND CALL_659_Cc_34 FP call 0.0 0 0 0 1 hg19 Y 9465169.0 15 88530757.0 0 0 UNEVALUABLE UNEVALUABLE
659_Cc intergenic(.,.) HLA-DRB5 chr6_GL000256v2_alt 3893170 chr6 32517589 BND CALL_659_Cc_35 FP call 0.0111 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_Cc intergenic(COL11A1,RNPC3) PAPPA chr1 103294428 chr9 116235139 TRANSLOCATION TRUTH_659_Cc_36 TRUTH truth 16.0 0 0 0 2225 hg19 1 103759984.0 9 118997418.0 0 0 UNEVALUABLE UNEVALUABLE
659_Cc intergenic(SPAG17,TBX15) HEATR5B chr1 118251242 chr2 37007266 TRANSLOCATION TRUTH_659_Cc_37 TRUTH truth 15.0 0 0 0 1299 hg19 1 118793865.0 2 37234409.0 0 0 UNEVALUABLE UNEVALUABLE
659_Cc ISG20L2 intergenic(ATP2B1,CCER1) chr1 156727415 chr12 89913099 TRANSLOCATION TRUTH_659_Cc_38 TRUTH truth 18.0 0 0 4701 10 hg19 1 156697207.0 12 90306876.0 0 10 UNEVALUABLE UNEVALUABLE
659_Cc SUCO TRIM5 chr1 172547955 chr11 5665018 TRANSLOCATION TRUTH_659_Cc_39 TRUTH truth 18.0 0 0 1 5780 hg19 1 172517095.0 11 5686248.0 0 1 UNEVALUABLE UNEVALUABLE
659_Cc UQCC5 intergenic(GPC5,GPC6) chr3 52540455 chr13 93010799 TRANSLOCATION TRUTH_659_Cc_40 TRUTH truth 13.0 0 0 501 0 hg19 3 52574471.0 13 93663052.0 0 0 UNEVALUABLE UNEVALUABLE
659_Cc PIK3R4 intergenic(CLRN1,MED12L) chr3 130723580 chr3 151083526 INVERSION TRUTH_659_Cc_41 TRUTH truth 13.0 0 0 1007 2 hg19 3 130442424.0 3 150801313.0 0 2 UNEVALUABLE UNEVALUABLE
659_Cc SMC4 PPM1L chr3 160431145 chr3 160960529 INVERSION TRUTH_659_Cc_42 TRUTH truth 27.0 0 0 1825 2 hg19 3 160148933.0 3 160678317.0 0 2 UNEVALUABLE UNEVALUABLE
659_Cc NLGN1 PRDM11 chr3 173453049 chr11 45224275 TRANSLOCATION TRUTH_659_Cc_43 TRUTH truth 23.0 0 0 0 3929 hg19 3 173170839.0 11 45245826.0 0 0 UNEVALUABLE UNEVALUABLE
659_Cc KLHL5 DNAAF4 chr4 39076012 chr15 55469039 TRANSLOCATION TRUTH_659_Cc_44 TRUTH truth 13.0 0 0 879 13 hg19 4 39077632.0 15 55761237.0 0 13 UNEVALUABLE UNEVALUABLE
659_Cc ANXA13 SERGEF chr8 123735064 chr11 17788176 TRANSLOCATION TRUTH_659_Cc_45 TRUTH truth 19.0 0 0 60 1821 hg19 8 124747304.0 11 17809723.0 0 60 EVALUABLE BAM_REFUTED
659_ddv ACBD3 intergenic(ACBD3,MIXL1) chr1 226165908 chr1 226214922 DUP CALL_659_ddv_0 TP call 0.8968 0 0 1161 6 hg19 1 226353609.0 1 226402623.0 0 6 UNEVALUABLE UNEVALUABLE
659_ddv AGT SKI chr1 230705738 chr1 2306143 BND CALL_659_ddv_1 TP_DUP call 0.9745 0 0 1611 1442 hg19 1 230841484.0 1 2237582.0 0 1442 EVALUABLE BAM_REFUTED
659_ddv XPO1 intergenic(XPO1,FAM161A) chr2 61481214 chr2 61572842 DUP CALL_659_ddv_2 TP call 0.9872 0 0 985 14 hg19 2 61708349.0 2 61799977.0 0 14 UNEVALUABLE UNEVALUABLE
659_ddv EXOC6B RAB11FIP5 chr2 72766592 chr2 73112576 DUP CALL_659_ddv_3 FP call 0.8436 0 0 15 2670 hg19 2 72993721.0 2 73339704.0 0 15 UNEVALUABLE UNEVALUABLE
659_ddv AGTR1 intergenic(AGTR1,CPB1) chr3 148739951 chr3 148752639 DUP CALL_659_ddv_4 FP call 0.0602 0 0 1428 1 hg19 3 148457738.0 3 148470426.0 0 1 UNEVALUABLE UNEVALUABLE
659_ddv ARHGEF26 ADAMTS9 chr3 154201684 chr3 64550956 BND CALL_659_ddv_5 FP call 0.1498 0 0 0 1330 hg19 3 153919473.0 3 64536632.0 0 0 UNEVALUABLE UNEVALUABLE
659_ddv intergenic(POLR2H,THPO) THPO chr3 184368729 chr3 184375908 DUP CALL_659_ddv_6 TP call 0.0005 0 0 483 3412 hg19 3 184086517.0 3 184093696.0 0 483 EVALUABLE BAM_REFUTED
659_ddv intergenic(SPRY1,ANKRD50) CHEK1 chr4 124566704 chr11 125657012 BND CALL_659_ddv_7 FP call 0.0 0 0 17 0 hg19 4 125487859.0 11 125526907.0 0 0 UNEVALUABLE UNEVALUABLE
659_ddv intergenic(CDH12,PRDM9) TBPL2 chr5 22970198 chr14 55440461 BND CALL_659_ddv_8 TP call 0.874 0 0 0 1451 hg19 5 22970307.0 14 55907179.0 0 0 UNEVALUABLE UNEVALUABLE
659_ddv HLA-C HLA-B chr6 31270631 chr6 31355888 DUP CALL_659_ddv_9 FP call 0.0005 100 0 9815 12095 hg19 6 31238408.0 6 31323665.0 100 9815 EVALUABLE BAM_CONFIRMED
659_ddv intergenic(IFNGR1,OLIG3) FAT4 chr6 137235641 chr4 125451799 BND CALL_659_ddv_10 TP_DUP call 0.9986 0 0 3 5403 hg19 6 137556778.0 4 126372954.0 0 3 UNEVALUABLE UNEVALUABLE
659_ddv intergenic(SPDYE21,AUTS2) LUC7L2 chr7 68798752 chr7 139405691 DEL CALL_659_ddv_11 TP call 0.9574 0 0 6 1493 hg19 7 68263739.0 7 139090437.0 0 6 UNEVALUABLE UNEVALUABLE
659_ddv ZFAND1 intergenic(KLF3,TLR10) chr8 81732668 chr4 38741145 BND CALL_659_ddv_12 TP_DUP call 0.8768 0 0 1021 55 hg19 8 82644903.0 4 38742766.0 0 55 EVALUABLE BAM_REFUTED
659_ddv MYC intergenic(MYC,GSDMC) chr8 127736893 chr8 127751667 DUP CALL_659_ddv_13 TP call 0.6078 0 0 12576 1 hg19 8 128749139.0 8 128763913.0 0 1 UNEVALUABLE UNEVALUABLE
659_ddv intergenic(ENSG00000235007,NTMT1) NTRK2 chr9 129472777 chr9 84863335 BND CALL_659_ddv_14 TP_DUP call 0.246 0 0 5 13508 hg19 9 132235056.0 9 87478250.0 0 5 UNEVALUABLE UNEVALUABLE
659_ddv TRIM8 WBP1L chr10 102658246 chr10 102813178 DUP CALL_659_ddv_15 FP call 0.9368 0 0 2 4946 hg19 10 104418003.0 10 104572935.0 0 2 UNEVALUABLE UNEVALUABLE
659_ddv intergenic(FBXO3,LMO2) LMO2 chr11 33834650 chr11 33859297 DUP CALL_659_ddv_16 FP call 0.2753 0 0 0 966 hg19 11 33856196.0 11 33880843.0 0 0 UNEVALUABLE UNEVALUABLE
659_ddv intergenic(FKBP4,ITFG2) ITFG2 chr12 2805919 chr12 2859320 DUP CALL_659_ddv_17 TP call 0.8672 0 0 0 3610 hg19 12 2915085.0 12 2968486.0 0 0 UNEVALUABLE UNEVALUABLE
659_ddv ATN1 CD163L1 chr12 6941477 chr12 7462130 DUP CALL_659_ddv_18 TP call 0.9972 0 0 2492 3 hg19 12 7050640.0 12 7614726.0 0 3 UNEVALUABLE UNEVALUABLE
659_ddv ETV6 intergenic(ETV6,BCL2L14) chr12 11875669 chr12 11935936 DUP CALL_659_ddv_19 FP call 0.0002 0 0 12763 2 hg19 12 12028603.0 12 12088870.0 0 2 UNEVALUABLE UNEVALUABLE
659_ddv intergenic(LMO3,RERGL) IKZF1 chr12 17516092 chr7 50403324 BND CALL_659_ddv_20 FP call 0.1325 0 0 0 0 hg19 12 17669026.0 7 50471022.0 0 0 UNEVALUABLE UNEVALUABLE
659_ddv UTP6 intergenic(UTP6,SUZ12) chr17 31893638 chr17 31932095 DUP CALL_659_ddv_21 FP call 0.9904 0 0 10 3 hg19 17 30220657.0 17 30259114.0 0 3 UNEVALUABLE UNEVALUABLE
659_ddv ENSG00000267318 HEATR6 chr17 59950264 chr17 60064339 DUP CALL_659_ddv_22 FP call 0.0 0 0 4 0 hg19 17 58027625.0 17 58141700.0 0 0 UNEVALUABLE UNEVALUABLE
659_ddv CAMSAP3 EXD3 chr19 7611804 chr9 137392201 BND CALL_659_ddv_23 FP call 0.043 0 0 4210 2 hg19 19 7676690.0 9 140286653.0 0 2 UNEVALUABLE UNEVALUABLE
659_ddv VCX VCX3A chrX 7844051 chrX 6533755 BND CALL_659_ddv_24 FP call 0.0 3 0 10040 4396 hg19 X 7812092.0 X 6451796.0 3 4396 EVALUABLE BAM_CONFIRMED
659_ddv intergenic(FKBP4,ITFG2) ITFG2 chr12 2805918 chr12 2859319 DUPLICATION TRUTH_659_ddv_25 TRUTH truth 38.0 0 0 0 3611 hg19 12 2915084.0 12 2968485.0 0 0 UNEVALUABLE UNEVALUABLE
659_ddv ACBD3 intergenic(ACBD3,MIXL1) chr1 226165907 chr1 226214921 DUPLICATION TRUTH_659_ddv_26 TRUTH truth 30.0 0 0 1161 6 hg19 1 226353608.0 1 226402622.0 0 6 UNEVALUABLE UNEVALUABLE
659_ddv intergenic(CDH12,PRDM9) TBPL2 chr5 22970197 chr14 55440460 TRANSLOCATION TRUTH_659_ddv_27 TRUTH truth 105.0 0 0 0 1451 hg19 5 22970306.0 14 55907178.0 0 0 UNEVALUABLE UNEVALUABLE
659_ddv ATN1 CD163L1 chr12 6941476 chr12 7462129 DUPLICATION TRUTH_659_ddv_28 TRUTH truth 221.0 0 0 2496 3 hg19 12 7050639.0 12 7614725.0 0 3 UNEVALUABLE UNEVALUABLE
659_ddv STARD13 RASA3 chr13 33218831 chr13 114007558 DUPLICATION TRUTH_659_ddv_29 TRUTH truth 125.0 0 0 1 627 hg19 13 33792968.0 13 114773034.0 0 1 UNEVALUABLE UNEVALUABLE
659_ddv intergenic(SPDYE21,AUTS2) LUC7L2 chr7 68798751 chr7 139405690 DELETION TRUTH_659_ddv_30 TRUTH truth 34.0 0 0 6 1493 hg19 7 68263738.0 7 139090436.0 0 6 UNEVALUABLE UNEVALUABLE
659_ddv intergenic(KLF3,TLR10) CHMP4C chr4 38741142 chr8 81732667 TRANSLOCATION TRUTH_659_ddv_31 TRUTH truth 35.0 0 0 55 1021 hg19 4 38742763.0 8 82644902.0 0 55 EVALUABLE BAM_REFUTED
659_ddv NTRK2 intergenic(ENSG00000235007,NTMT1) chr9 84863332 chr9 129472778 INVERSION TRUTH_659_ddv_32 TRUTH truth 117.0 0 0 13546 5 hg19 9 87478247.0 9 132235057.0 0 5 UNEVALUABLE UNEVALUABLE
659_ddv intergenic(POLR2H,THPO) THPO chr3 184368728 chr3 184375907 DUPLICATION TRUTH_659_ddv_33 TRUTH truth 109.0 0 0 484 3411 hg19 3 184086516.0 3 184093695.0 0 484 EVALUABLE BAM_REFUTED
659_ddv FAT4 intergenic(IFNGR1,OLIG3) chr4 125451798 chr6 137235640 TRANSLOCATION TRUTH_659_ddv_34 TRUTH truth 48.0 0 0 5404 2 hg19 4 126372953.0 6 137556777.0 0 2 UNEVALUABLE UNEVALUABLE
659_ddv XPO1 intergenic(XPO1,FAM161A) chr2 61481213 chr2 61572841 DUPLICATION TRUTH_659_ddv_35 TRUTH truth 90.0 0 0 985 14 hg19 2 61708348.0 2 61799976.0 0 14 UNEVALUABLE UNEVALUABLE
659_ddv MYC intergenic(MYC,GSDMC) chr8 127736892 chr8 127751666 DUPLICATION TRUTH_659_ddv_36 TRUTH truth 113.0 0 0 12564 1 hg19 8 128749138.0 8 128763912.0 0 1 UNEVALUABLE UNEVALUABLE
659_ddv SKI AGT chr1 2306139 chr1 230705740 INVERSION TRUTH_659_ddv_37 TRUTH truth 64.0 0 0 1436 1613 hg19 1 2237578.0 1 230841486.0 0 1436 EVALUABLE BAM_REFUTED
659_eaQ MACROH2A2 HLA-DRB1 chr10 70083483 chr6 32581590 BND CALL_659_eaQ_0 FP call 0.0 0 0 17 1908 hg19 10.0 71843239.0 6.0 32549367.0 0 17 UNEVALUABLE UNEVALUABLE
659_eaQ TBC1D2B ADAMTS7 chr15 77984648 chr15 78768242 BND CALL_659_eaQ_1 FP call 0.002 54 0 1025 1181 hg19 15.0 78276990.0 15.0 79060584.0 54 1025 EVALUABLE BAM_CONFIRMED
659_eaQ intergenic(NOMO2,RPS15A) MYB chr16 18761032 chr6 135206919 BND CALL_659_eaQ_2 FP call 0.0003 0 0 22 3985 hg19 16.0 18772354.0 6.0 135528057.0 0 22 EVALUABLE BAM_REFUTED
659_eaQ FNDC8 intergenic(TRPM1,KLF13) chr17 35123746 chr15 31221386 BND CALL_659_eaQ_3 FP call 0.0 0 0 27 32 hg19 17.0 33450765.0 15.0 31513589.0 0 27 EVALUABLE BAM_REFUTED
659_eaQ intergenic(.,.) HLA-DQB1 chr6_GL000252v2_alt 3900702 chr6 32659750 BND CALL_659_eaQ_4 FP call 0.0003 -1 -1 0 0 hg19 -1 0 UNEVALUABLE UNEVALUABLE
659_eaQ MYB NFIB chr6 135206773 chr9 14085332 TRANSLOCATION TRUTH_659_eaQ_5 TRUTH truth 29.0 0 0 3741 13 hg19 6.0 135527911.0 9.0 14085331.0 0 13 UNEVALUABLE UNEVALUABLE
659_eeB intergenic(PLXNA2,CAMK1G) ZC3H11A chr1 208529632 chr1 203797727 BND CALL_659_eeB_0 FP call 0.0009 0 0 0 2738 hg19 1 208702977.0 1 203766855.0 0 0 UNEVALUABLE UNEVALUABLE
659_eeB LRP1B intergenic(ZEB2,ACVR2A) chr2 140492669 chr2 146721834 DEL CALL_659_eeB_1 TP call 0.9958 0 0 1130 0 hg19 2 141250238.0 2 147479402.0 0 0 UNEVALUABLE UNEVALUABLE
659_eeB NEB intergenic(SATB2,FTCDNL1) chr2 151677634 chr2 199600623 DEL CALL_659_eeB_2 FP call 0.0007 0 0 2386 25 hg19 2 152534148.0 2 200465346.0 0 25 EVALUABLE BAM_REFUTED
659_eeB PLCL1 NEB chr2 197963175 chr2 151677632 BND CALL_659_eeB_3 TP_DUP call 0.7984 0 0 0 2383 hg19 2 198827899.0 2 152534146.0 0 0 UNEVALUABLE UNEVALUABLE
659_eeB intergenic(RBMS3,TGFBR2) CYP4F12 chr3 30173584 chr19 15684855 BND CALL_659_eeB_4 FP call 0.0 0 0 0 2208 hg19 3 30215075.0 19 15795665.0 0 0 UNEVALUABLE UNEVALUABLE
659_eeB ZYX intergenic(ATP6V0E2,ACTR3C) chr7 143389859 chr7 150006438 DUP CALL_659_eeB_5 FP call 0.0165 0 0 1231 10 hg19 7 143086952.0 7 149703527.0 0 10 UNEVALUABLE UNEVALUABLE
659_eeB EPHA1 intergenic(ATP6V0E2,ACTR3C) chr7 143396457 chr7 150009333 DUP CALL_659_eeB_6 FP call 0.9877 0 0 1446 0 hg19 7 143093550.0 7 149706422.0 0 0 UNEVALUABLE UNEVALUABLE
659_eeB CDKN1B intergenic(EMP1,GRIN2B) chr12 12720096 chr12 13265977 DUP CALL_659_eeB_7 FP call 0.7499 0 0 1 0 hg19 12 12873030.0 12 13418911.0 0 0 UNEVALUABLE UNEVALUABLE
659_eeB LPAR6 GPC6 chr13 48411784 chr13 93992476 DEL CALL_659_eeB_8 TP call 0.9961 0 0 2263 0 hg19 13 48985920.0 13 94644730.0 0 0 UNEVALUABLE UNEVALUABLE
659_eeB UNC13C ADAD2 chr15 54147633 chr16 84196003 BND CALL_659_eeB_9 TP call 0.9993 0 0 19 6314 hg19 15 54439830.0 16 84229609.0 0 19 UNEVALUABLE UNEVALUABLE
659_eeB intergenic(MUC16,OR1M1) ZNF823 chr19 9062166 chr19 11721970 BND CALL_659_eeB_10 TP call 0.9965 0 0 9 4214 hg19 19 9172842.0 19 11832785.0 0 9 UNEVALUABLE UNEVALUABLE
659_eeB intergenic(ZNF823,ZNF441) IL27RA chr19 11748823 chr19 14049057 BND CALL_659_eeB_11 TP call 0.9849 0 0 13 1758 hg19 19 11859638.0 19 14159869.0 0 13 UNEVALUABLE UNEVALUABLE
659_eeB ZNF208 intergenic(ZNF254,UQCRFS1) chr19 21974243 chr19 24250105 BND CALL_659_eeB_12 FP call 0.5857 0 0 17851 6 hg19 19 22157045.0 19 24432907.0 0 6 UNEVALUABLE UNEVALUABLE
659_eeB LRP1B intergenic(ZEB2,ACVR2A) chr2 140492668 chr2 146721833 DELETION TRUTH_659_eeB_13 TRUTH truth 285.0 0 0 1130 0 hg19 2 141250237.0 2 147479401.0 0 0 UNEVALUABLE UNEVALUABLE
659_eeB NEB PLCL1 chr2 151677624 chr2 197963181 INVERSION TRUTH_659_eeB_14 TRUTH truth 89.0 0 0 2370 0 hg19 2 152534138.0 2 198827905.0 0 0 UNEVALUABLE UNEVALUABLE
659_eeB LPAR6 GPC6 chr13 48411783 chr13 93992475 DELETION TRUTH_659_eeB_15 TRUTH truth 21.0 0 0 2262 0 hg19 13 48985919.0 13 94644729.0 0 0 UNEVALUABLE UNEVALUABLE
659_eeB intergenic(ANKRD10,ARHGEF7) SPACA7 chr13 110952850 chr13 112398052 INVERSION TRUTH_659_eeB_16 TRUTH truth 22.0 0 0 191 431 hg19 13 111605197.0 13 113052366.0 0 191 EVALUABLE BAM_REFUTED
659_eeB UNC13C ADAD2 chr15 54147632 chr16 84196002 TRANSLOCATION TRUTH_659_eeB_17 TRUTH truth 150.0 0 0 19 6320 hg19 15 54439829.0 16 84229608.0 0 19 UNEVALUABLE UNEVALUABLE
659_eeB intergenic(MUC16,OR1M1) ZNF823 chr19 9062164 chr19 11721968 INVERSION TRUTH_659_eeB_18 TRUTH truth 176.0 0 0 9 4207 hg19 19 9172840.0 19 11832783.0 0 9 UNEVALUABLE UNEVALUABLE
659_eeB intergenic(ZNF823,ZNF441) IL27RA chr19 11748822 chr19 14049056 INVERSION TRUTH_659_eeB_19 TRUTH truth 184.0 0 0 13 1758 hg19 19 11859637.0 19 14159868.0 0 13 UNEVALUABLE UNEVALUABLE
659_gK LMNA NTRK1 chr1 156134413 chr1 156874830 DEL CALL_659_gK_0 TP call 0.9759 0 0 1733 19714 hg19 1 156104204.0 1 156844622.0 0 1733 EVALUABLE BAM_REFUTED
659_gK HACE1 ENSG00000282218 chr6 104740934 chr6 117339213 DEL CALL_659_gK_1 FP call 0.0022 0 0 2 10854 hg19 6 105188809.0 6 117660376.0 0 2 UNEVALUABLE UNEVALUABLE
659_gK LMNA NTRK1 chr1 156134412 chr1 156874829 DELETION TRUTH_659_gK_2 TRUTH truth 478.0 0 0 1732 19718 hg19 1 156104203.0 1 156844621.0 0 1732 EVALUABLE BAM_REFUTED
659_6i NRG3 PAX3 chr10 82919154 chr2 222212613 BND CALL_659_6i_0 FP call 0.0 0 0 13 16515 hg19 10 84678910.0 2 223077332.0 0 13 UNEVALUABLE UNEVALUABLE
659_6i ERG TMPRSS2 chr21 38512159 chr21 41497246 DEL CALL_659_6i_1 TP call 0.4211 12 9 15 10116 hg19 21 39884083.0 21 42869173.0 21 15 UNEVALUABLE UNEVALUABLE
659_6i ERG TMPRSS2 chr21 38512158 chr21 41497245 DELETION TRUTH_659_6i_2 TRUTH truth 28.0 12 9 15 10124 hg19 21 39884082.0 21 42869172.0 21 15 UNEVALUABLE UNEVALUABLE
5089 rows