Tasks
Actions
AI-generated troubleshooting analysis is available in the AI Analysis tab.
Resume
To resume this run, resubmit with same or fixed code. You can also change other parameters but that will affect caching behavior.
-resume bding-cnv-pipe-2026-05-18t20-19-47z
Error Report
Error executing process > 'CNV_PIPE:CalcPanelCoverage (FC12_cnv_calc_panel_coverage_3599856719_r12)'
Caused by:
Process `CNV_PIPE:CalcPanelCoverage (FC12_cnv_calc_panel_coverage_3599856719_r12)` terminated with an error exit status (143)
Command executed:
echo "$(pwd)"
mkdir -p 3599856719_r12/
cnv_pipe calc-panel-coverage \
3599856719_r12.bam \
Renasight_CNV.tm.bed \
$(pwd)/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz \
$(pwd)/counts.tsv \
1 \
20 \
$(pwd)/3599856719_r12/ \
Command exit status:
143
Command output:
/tmp/nxf.TZBFU7iQBV
Work dir:
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/71f3771fedc2b9810ccd9ad2c1af1d
Container:
292967571998.dkr.ecr.us-west-2.amazonaws.com/bding/cnv_pipe:bding_1.0.6
Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh`
Workflow
- Language / Cluster
- Nextflow / pltf-dev
- Session ID
- ac3b259b-fb1e-4997-bf59-92a6db7a2d54
- Source
- /code/cnv_pipe.nf
- Work Dir
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work
- Submitted By
- bding
- Resumed
- No
Cost and Runtime
- Status
- failed
- Cost
- $18.69
- Outputs
- 8 MB
- Started
- May 18, 2026 1:20 PM
- Completed
- May 18, 2026 1:27 PM
- Duration
- 7m 0s
- Post-workflow Transfer
- 3s
- Exit Status
- 143
- Peak Tasks / CPU / Mem
- 362 / 724 / 70.7 TB