Error executing process > 'CNV_PIPE:AggregateBatchData (FC12_cnv_cnv_pipe_1_agg_batch)'

Caused by:
  Process `CNV_PIPE:AggregateBatchData (FC12_cnv_cnv_pipe_1_agg_batch)` terminated with an error exit status (1)


Command executed:

  mkdir -p clusters_1
  copy_path.py folder s3://natera-platform-sandbox/platform-users/bding/CNV/FC12/CNV_working_fullplate_11/clusters_1/ clusters_1/clusters/
  copy_path.py file s3://natera-platform-sandbox/platform-users/bding/CNV/FC12/CNV_working_fullplate_11/counts_1.parquet clusters_1/counts.parquet 
  copy_path.py file s3://natera-platform-sandbox/platform-users/bding/CNV/FC12/CNV_working_fullplate_11/sample_metrics_1.parquet clusters_1/sample_metrics.parquet 
  copy_path.py file s3://natera-platform-sandbox/platform-users/bding/CNV/FC12/CNV_working_fullplate_11/ploidy_1.parquet clusters_1/ploidy.parquet 
  cnv_pipe aggregate-batch-data \
           ./clusters_1/ \
           Renasight_CNV.tm.bed \
           renasight_blacklist_probes.bed \
           ./ \
           FC12_cnv_1

Command exit status:
  1

Command output:
  (empty)

Command error:
  mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
  Matplotlib created a temporary cache directory at /tmp/matplotlib-mfzu2ble because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
  Traceback (most recent call last):
    File "/opt/venv/bin/cnv_pipe", line 10, in <module>
      sys.exit(main())
               ^^^^^^
    File "/opt/venv/lib/python3.12/site-packages/cnv_pipe/cli.py", line 31, in main
      arguably.run()
    File "/opt/venv/lib/python3.12/site-packages/arguably/_context.py", line 732, in run
      result = cmd.call(parsed_args)
               ^^^^^^^^^^^^^^^^^^^^^
    File "/opt/venv/lib/python3.12/site-packages/arguably/_commands.py", line 409, in call
      return self.function(*args, **kwargs)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
    File "/opt/venv/lib/python3.12/site-packages/cnv_pipe/batch/agg.py", line 356, in aggregate_batch_data
      df_params, df_samples = concat_models(cluster_dir, bed_clusters)
                              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
    File "/opt/venv/lib/python3.12/site-packages/cnv_pipe/batch/agg.py", line 46, in concat_models
      df_samples = pd.concat([pd.read_csv(x) for x in sample_files])
                              ^^^^^^^^^^^^^^
    File "/opt/venv/lib/python3.12/site-packages/pandas/io/parsers/readers.py", line 873, in read_csv
      return _read(filepath_or_buffer, kwds)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
    File "/opt/venv/lib/python3.12/site-packages/pandas/io/parsers/readers.py", line 300, in _read
      parser = TextFileReader(filepath_or_buffer, **kwds)
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
    File "/opt/venv/lib/python3.12/site-packages/pandas/io/parsers/readers.py", line 1645, in __init__
      self._engine = self._make_engine(f, self.engine)
                     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
    File "/opt/venv/lib/python3.12/site-packages/pandas/io/parsers/readers.py", line 1904, in _make_engine
      self.handles = get_handle(
                     ^^^^^^^^^^^
    File "/opt/venv/lib/python3.12/site-packages/pandas/io/common.py", line 930, in get_handle
      handle = open(
               ^^^^^
  FileNotFoundError: [Errno 2] No such file or directory: 'clusters_1/clusters/cluster_89_samples.csv'

Work dir:
  s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/82cf800362bf3f53fac6e091fced3f

Container:
  292967571998.dkr.ecr.us-west-2.amazonaws.com/bding/cnv_pipe:bding_1.0.6

Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh`