Downloading: s3://natera-platform-sandbox/platform_projects/renasight_cnv/MANE.GRCh38.v1.5.ensembl_genomic.gff
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/318b6d99d402f285c0eaa2b51bc27b/.command.sh
  Downloading: s3://natera-platform-sandbox/platform_projects/renasight_cnv/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/318b6d99d402f285c0eaa2b51bc27b/.command.run
  Downloading: s3://natera-platform-sandbox/platform_projects/renasight_cnv/renasight_gene_list.txt
  Downloading: s3://natera-platform-sandbox/platform-users/bding/CNV/REF/Renasight_CNV.mosatic.tm.bed
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-zif_qjbl because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
   chrom   start     end closest_gene
0  chr12  752552  752672         WNK1
1  chr12  752672  752792         WNK1
2  chr12  752792  752912         WNK1
3  chr12  752912  753032         WNK1
4  chr12  753032  753152         WNK1
  chrom    start      end closest_gene            exon_id
0  chr1  5862748  5862868        NPHP4  ENSE00001476440.2
1  chr1  5862868  5862988        NPHP4  ENSE00001476440.2
2  chr1  5862988  5863108        NPHP4  ENSE00001476440.2
3  chr1  5863108  5863228        NPHP4  ENSE00001476440.2
4  chr1  5863232  5863352        NPHP4  ENSE00001476440.2