.command.sh - Workdir - ClusterPanelRegions (FC13_cnv_mosaic_cluster_panel_regions)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/318b6d99d402f285c0eaa2b51bc27b/.command.sh
Size: 273 bytes
Task: ClusterPanelRegions (FC13_cnv_mosaic_cluster_panel_regions)
Attempt

Content

#!/bin/bash -Ceuo pipefail
cnv_pipe cluster-panel-regions \
        Renasight_CNV.mosatic.tm.bed \
        MANE.GRCh38.v1.5.ensembl_genomic.gff \
        GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz.fai \
        clustered_panel.csv \
        renasight_gene_list.txt