.command.log - Workdir - CNV_PIPE:CalcPanelCoverage (FC13_cnv_mosaic_calc_panel_coverage_3574103386_r13)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/1595d073864aadf0a405d440108790/.command.log
Size: 1.3 KB
Task: CNV_PIPE:CalcPanelCoverage (FC13_cnv_mosaic_calc_panel_coverage_3574103386_r13)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/1595d073864aadf0a405d440108790/.command.sh
  Downloading: s3://natera-platform-sandbox/platform_projects/renasight_cnv/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz.gzi
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/flowcell-runs/20260429_LH00527_0078_A23TNVJLT4/fix-s5cmd-runners_260506112613/bams/3574103386_r13.bam
  Downloading: s3://natera-platform-sandbox/platform-users/bding/CNV/REF/Renasight_CNV.mosatic.tm.bed
  Downloading: s3://natera-platform-sandbox/platform_projects/renasight_cnv/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/1595d073864aadf0a405d440108790/.command.run
  Downloading: s3://natera-platform-sandbox/platform_projects/renasight_cnv/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz
==> STAGING COMPLETE (7 inputs)

/tmp/nxf.z9Nj0TO7Q3
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-9e6wddoa because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.