.command.sh - Workdir - CNV_PIPE:ProcessBatch (FC13_cnv_mosaic_cnv_pipe_1_process_batch)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/112b8e5e8f3a61fbf890708d7c7cfc/.command.sh
Size: 434 bytes
Task: CNV_PIPE:ProcessBatch (FC13_cnv_mosaic_cnv_pipe_1_process_batch)
Attempt

Content

#!/bin/bash -Ceuo pipefail
cnv_pipe process-batch \
         input_1.csv \
         Renasight_CNV.mosatic.tm.bed \
         renasight_variable_regions.bed \
         s3://natera-platform-sandbox/platform-users/bding/CNV/FC13/CNV_working_Mosaic_v4_11 \
         counts_1.parquet \
         sample_metrics_1.parquet \
         ploidy_1.parquet \
         FC13_cnv_mosaic_1__sex_calls.parquet \
         FC13_cnv_mosaic_1__sex_calls.png