#!/bin/bash -Ceuo pipefail
cnv_pipe process-batch \
         input_1.csv \
         Renasight_CNV.mosatic.tm.bed \
         renasight_variable_regions.bed \
         s3://natera-platform-sandbox/platform-users/bding/CNV/FC13/CNV_working_Mosaic_v4_11 \
         counts_1.parquet \
         sample_metrics_1.parquet \
         ploidy_1.parquet \
         FC13_cnv_mosaic_1__sex_calls.parquet \
         FC13_cnv_mosaic_1__sex_calls.png