Downloading: s3://natera-platform-sandbox/platform_projects/renasight_cnv/beta_constrain.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/112b8e5e8f3a61fbf890708d7c7cfc/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/112b8e5e8f3a61fbf890708d7c7cfc/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/112b8e5e8f3a61fbf890708d7c7cfc/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/318b6d99d402f285c0eaa2b51bc27b/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/adc3e6d622156701b04f72f229ccf0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/adc3e6d622156701b04f72f229ccf0/.command.run
==> STAGING COMPLETE (7 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-r0kwv4yp because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 23:14:28,233 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 23:14:29,031 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 23:14:29,054 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 23:14:29,993 - cnv_pipe.batch.run_model - INFO - Loaded data with 93 samples
2026-06-08 23:14:29,993 - cnv_pipe.batch.run_model - INFO - Loading per-probe beta priors from beta_constrain.tsv
2026-06-08 23:14:30,004 - cnv_pipe.batch.run_model - INFO - Matched beta priors for 50 / 22880 probes from beta_constrain.tsv
2026-06-08 23:14:30,396 - cnv_pipe.batch.run_model.cluster106 - INFO - Child process started for cluster 106 with 172 probes
2026-06-08 23:17:29,297 - cnv_pipe.batch.run_model.cluster106 - INFO - Child process finished cluster 106. Wrote clusters_1/cluster_106_samples.csv and clusters_1/cluster_106_params.csv
2026-06-08 23:17:29,300 - cnv_pipe.batch.run_model - INFO - Cluster 106 processed successfully with status SUCCESS
2026-06-08 23:17:29,300 - cnv_pipe.batch.run_model - INFO - All done. Processed the cluster 106 in 179.28 seconds