Downloading: s3://natera-platform-sandbox/platform_projects/renasight_cnv/beta_constrain.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/112b8e5e8f3a61fbf890708d7c7cfc/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/112b8e5e8f3a61fbf890708d7c7cfc/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/112b8e5e8f3a61fbf890708d7c7cfc/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/895ef6c1834924beffe504661e7c67/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/318b6d99d402f285c0eaa2b51bc27b/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/895ef6c1834924beffe504661e7c67/.command.run
==> STAGING COMPLETE (7 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-i_caxken because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 23:12:13,943 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 23:12:14,772 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 23:12:14,794 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 23:12:15,746 - cnv_pipe.batch.run_model - INFO - Loaded data with 93 samples
2026-06-08 23:12:15,747 - cnv_pipe.batch.run_model - INFO - Loading per-probe beta priors from beta_constrain.tsv
2026-06-08 23:12:15,757 - cnv_pipe.batch.run_model - INFO - Matched beta priors for 50 / 22880 probes from beta_constrain.tsv
2026-06-08 23:12:16,140 - cnv_pipe.batch.run_model.cluster10 - INFO - Child process started for cluster 10 with 136 probes
2026-06-08 23:14:47,973 - cnv_pipe.batch.run_model.cluster10 - INFO - Child process finished cluster 10. Wrote clusters_1/cluster_10_samples.csv and clusters_1/cluster_10_params.csv
2026-06-08 23:14:47,975 - cnv_pipe.batch.run_model - INFO - Cluster 10 processed successfully with status SUCCESS
2026-06-08 23:14:47,975 - cnv_pipe.batch.run_model - INFO - All done. Processed the cluster 10 in 152.20 seconds