.command.sh - Workdir - CNV_PIPE:ModelSingle (FC13_cnv_mosaic_1_cnv_pipe_10_model_single)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/895ef6c1834924beffe504661e7c67/.command.sh
Size: 289 bytes
Task: CNV_PIPE:ModelSingle (FC13_cnv_mosaic_1_cnv_pipe_10_model_single)
Attempt

Content

#!/bin/bash -Ceuo pipefail
cnv_pipe model-single-cluster \
10 \
clustered_panel.csv \
counts_1.parquet \
sample_metrics_1.parquet \
ploidy_1.parquet \
clusters_1/ \
--num-steps-svi 7500 \
--num-steps-full-svi 15000 \
--num-posterior-samples 5000 --probe-beta-prior-file beta_constrain.tsv