Downloading: s3://natera-platform-sandbox/pipeline-outputs/flowcell-runs/20260210_LH00519_0056_A23K2N2LT4/1076-add-custom-fastq-sample-merging_afd6c9_260212144006/bams/3574258777_r8_L15.bam.bai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/cf86bfe97f250f6ab14f5c61e141ef/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/cf86bfe97f250f6ab14f5c61e141ef/.command.sh
Downloading: s3://natera-platform-sandbox/pipeline-outputs/flowcell-runs/20260210_LH00519_0056_A23K2N2LT4/1076-add-custom-fastq-sample-merging_afd6c9_260212144006/bams/3574258777_r8_L15.bam
==> STAGING COMPLETE (4 inputs)
Loading wildtype catalog...
63 wildtype units loaded (0 skipped: [])
Sample: 3574258777_r8_L15
BAM: 3574258777_r8_L15.bam
[W::hts_idx_load3] The index file is older than the data file: 3574258777_r8_L15.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 3574258777_r8_L15.bam.bai
Units: 4591 | Length-change anomalies: 20 | K-mer frac: 0.0015 | Call: NEGATIVE
Length-variant units:
Len Count Frac ED Match Description
---------------------------------------------------------------------------
59 5 0.0011 1 C -1bp del at pos 20-20 (T), clinical: 60-60del
59 2 0.0004 18 bJ -1bp deletion (complex alignment)
42 2 0.0004 18 B -18bp del at pos 37-54 (CCGGGGCCGGCCTGCTCT),
59 1 0.0002 19 D -1bp deletion (complex alignment)
18 1 0.0002 42 A -42bp del at pos 16-57 (GGGCTGCGGGCGCGGTGGAGC
36 1 0.0002 26 aB* -24bp deletion (complex alignment)
61 1 0.0002 19 aE +1bp insertion (complex alignment)
36 1 0.0002 26 aB* -24bp deletion (complex alignment)
59 1 0.0002 9 D -1bp deletion (complex alignment)
59 1 0.0002 18 D -1bp deletion (complex alignment)
59 1 0.0002 14 D -1bp deletion (complex alignment)
58 1 0.0002 22 Y -2bp deletion (complex alignment)
61 1 0.0002 17 aE +1bp insertion (complex alignment)
59 1 0.0002 17 bJ -1bp deletion (complex alignment)
61 1 0.0002 18 aE +1bp insertion (complex alignment)
Final call: NEGATIVE
[]
K-mer evidence: kmer_frac=0.0015
Variant(s) detected: