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2026/05/29 18:35:04 INFO  : Logs_Intermediates/DnaDragenCaller/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/05/29 18:35:04 INFO  : Logs_Intermediates/DnaDragenCaller/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/05/29 18:35:04 INFO  : Logs_Intermediates/DnaDragenCaller/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
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2026/05/29 18:35:04 INFO  : Logs_Intermediates/DnaDragenCaller/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/05/29 18:35:04 INFO  : Logs_Intermediates/DnaDragenCaller/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna.pileup.txt: Copied (new)
2026/05/29 18:35:04 INFO  : Logs_Intermediates/DnaDragenCaller/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
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2026/05/29 18:35:04 INFO  : Logs_Intermediates/DnaDragenCaller/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/05/29 18:35:04 INFO  : Logs_Intermediates/DnaDragenCaller/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:35:04 INFO  : Logs_Intermediates/DnaDragenCaller/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/05/29 18:35:04 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna.combined.counts.txt.gz: Copied (new)
2026/05/29 18:35:04 INFO  : Logs_Intermediates/DnaDragenCaller/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
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2026/05/29 18:35:04 INFO  : ica_logs/out/TSO500_Nextflow_Logs/analysis_node_002-nextflow.log: Copied (new)
2026/05/29 18:35:04 INFO  : Logs_Intermediates/DnaDragenCaller/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:35:04 INFO  : Logs_Intermediates/DnaDragenCaller/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/05/29 18:35:04 INFO  : Logs_Intermediates/DnaDragenCaller/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/05/29 18:35:04 INFO  : Logs_Intermediates/DnaDragenCaller/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/05/29 18:35:04 INFO  : Logs_Intermediates/DnaDragenCaller/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:35:04 INFO  : Logs_Intermediates/DnaDragenCaller/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions-finder.txt: Copied (new)
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2026/05/29 18:35:04 INFO  : Logs_Intermediates/DnaDragenCaller/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/05/29 18:35:05 INFO  : Logs_Intermediates/DnaDragenCaller/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/05/29 18:35:05 INFO  : Logs_Intermediates/DnaDragenCaller/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
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2026/05/29 18:35:05 INFO  : Results/659_hv-T1-TDNA-1_HLNMCDRX7_1/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.gene_cov_report.tsv: Copied (new)
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2026/05/29 18:35:05 INFO  : Logs_Intermediates/SampleAnalysisResults/1267_E2-T1-TDNA-1_HLNMCDRX7_1_SARJeantLog-20260529033126.log: Copied (new)
2026/05/29 18:35:05 INFO  : Logs_Intermediates/DnaDragenCaller/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions.txt: Copied (new)
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2026/05/29 18:35:05 INFO  : Logs_Intermediates/DnaDragenCaller/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
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2026/05/29 18:35:05 INFO  : Logs_Intermediates/DnaDragenCaller/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780014817641_7192.log: Copied (new)
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2026/05/29 18:35:05 INFO  : Logs_Intermediates/SampleAnalysisResults/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_SARJeantLog-20260529032851.log: Copied (new)
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2026/05/29 18:35:05 INFO  : Results/659_hv-T1-TDNA-1_HLNMCDRX7_1/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna_TMB_Trace.tsv: Copied (new)
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2026/05/29 18:35:06 INFO  : Logs_Intermediates/Contamination/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529025043.log: Copied (new)
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2026/05/29 18:35:06 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/05/29 18:35:06 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
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2026/05/29 18:35:06 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna.bam.md5sum: Copied (new)
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2026/05/29 18:35:06 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
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2026/05/29 18:35:06 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
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2026/05/29 18:35:06 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/05/29 18:35:06 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna.fastq_list.csv: Copied (new)
2026/05/29 18:35:06 INFO  : Results/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_Annotated.json.gz: Copied (new)
2026/05/29 18:35:06 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
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2026/05/29 18:35:06 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna.exon_hist.csv: Copied (new)
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2026/05/29 18:35:06 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna.gc_metrics.csv: Copied (new)
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2026/05/29 18:35:06 INFO  : Results/1029_BR1-T1-TDNA-1_HLNMCDRX7_1/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf: Copied (new)
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2026/05/29 18:35:06 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_diffs.txt: Copied (new)
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2026/05/29 18:35:06 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:35:06 INFO  : Results/1267_E2-T1-TDNA-1_HLNMCDRX7_1/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_Annotated.json.gz: Copied (new)
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2026/05/29 18:35:06 INFO  : Results/1029_BR1-T1-TDNA-1_HLNMCDRX7_1/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_Annotated.json.gz: Copied (new)
2026/05/29 18:35:06 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:35:06 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
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2026/05/29 18:35:06 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
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2026/05/29 18:35:06 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.combined.counts.txt.gz: Copied (new)
2026/05/29 18:35:06 INFO  : Results/1047_CQ-T1-TDNA-1_HLNMCDRX7_1/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna.gis.json: Copied (new)
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2026/05/29 18:35:07 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
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2026/05/29 18:35:09 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/.command.trace: Copied (new)
2026/05/29 18:35:09 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/.command.run: Copied (new)
2026/05/29 18:35:09 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/.command.sh: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/Contamination/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna_contamination.json: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/CombinedVariantOutput/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_CombinedVariantOutput.tsv: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/Contamination/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529030618.log: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:35:09 INFO  : Results/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.bam.md5sum: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780022223189_276038.log: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780022223197_276038.log: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.gff3: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/05/29 18:35:09 INFO  : Results/1029_JAD-T1-TDNA-1_HLNMCDRX7_1/1029_JAD-T1-TDNA-1_HLNMCDRX7_1_dna/1029_JAD-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.exon_hist.csv: Copied (new)
2026/05/29 18:35:09 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.fastq_list.csv: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.bam.bai: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.insert-stats.tab: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_log.txt: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_output.json: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:35:10 INFO  : Results/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.pileup.txt: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:35:10 INFO  : Results/1267_FC-T1-TDNA-1_HLNMCDRX7_1/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:35:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_callability.bed: Copied (new)
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2026/05/29 18:35:15 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.exon_cov_report.bed: Copied (new)
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2026/05/29 18:35:15 INFO  : Results/1267_EO-T1-TDNA-1_HLNMCDRX7_1/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf: Copied (new)
2026/05/29 18:35:15 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/05/29 18:35:15 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/05/29 18:35:15 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/05/29 18:35:15 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/05/29 18:35:15 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/05/29 18:35:15 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.fastq_list.csv: Copied (new)
2026/05/29 18:35:15 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/05/29 18:35:15 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:35:15 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.insert-stats.tab: Copied (new)
2026/05/29 18:35:15 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:35:15 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_output.json: Copied (new)
2026/05/29 18:35:15 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_log.txt: Copied (new)
2026/05/29 18:35:15 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/05/29 18:35:15 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:35:15 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:35:15 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/05/29 18:35:15 INFO  : Results/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf: Copied (new)
2026/05/29 18:35:15 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:35:15 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:35:15 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:35:15 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.pileup.txt: Copied (new)
2026/05/29 18:35:15 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:35:15 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:35:15 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:35:15 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:35:15 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:35:15 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:35:15 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:35:15 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.bam.bai: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.combined.counts.txt.gz: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions.txt: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:35:16 INFO  : Results/1241_RY0-T1-TDNA-1_HLNMCDRX7_1/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780018661178_138766.log: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780018661194_138766.log: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaCoverageReports/1029_JAD-T1-TDNA-1_HLNMCDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
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2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/Tmb/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
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2026/05/29 18:35:16 INFO  : Logs_Intermediates/Tmb/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
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2026/05/29 18:35:16 INFO  : Logs_Intermediates/Tmb/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
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2026/05/29 18:35:16 INFO  : Logs_Intermediates/Tmb/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/Tmb/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.tmb.metrics.csv: Copied (new)
2026/05/29 18:35:16 INFO  : ica_logs/bpe1-433e7c51-e385-4edd-a85e-4fe1e7305621-1pre/17/stderr.mvtpp.log: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/Tmb/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780023030463_304363.log: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780021153176_239019.log: Copied (new)
2026/05/29 18:35:16 INFO  : Logs_Intermediates/Tmb/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529010911.log: Copied (new)
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2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.bam.md5sum: Copied (new)
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2026/05/29 18:35:16 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz: Copied (new)
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2026/05/29 18:35:17 INFO  : Results/659_pO-T1-TDNA-1_HLNMCDRX7_1/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf: Copied (new)
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2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/05/29 18:35:17 INFO  : Results/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.exon_hist.csv: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.gc_metrics.csv: Copied (new)
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2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.fastq_list.csv: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_output.json: Copied (new)
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2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.insert-stats.tab: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_log.txt: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_tumor.dist: Copied (new)
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2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.pileup.txt: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.combined.counts.txt.gz: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/05/29 18:35:17 INFO  : Results/1047_CQ-T1-TDNA-1_HLNMCDRX7_1/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_hist.csv: Copied (new)
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2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
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2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:35:17 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
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2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/Gis/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna_bAllele.tsv: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.gff3: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/Gis/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.abcn_annotated.vcf: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.exon_hist.csv: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/Gis/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna_logRatio.tsv: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/Gis/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna_logRatio.original.tsv: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/SampleAnalysisResults/1267_2-T1-TDNA-1_HLNMCDRX7_1_SARJeantLog-20260529032957.log: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.fastq_list.csv: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.bam.bai: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/Gis/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna_raw.tsv: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.insert-stats.tab: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_log.txt: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:35:19 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_output.json: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_JAD-T1-TDNA-1_HLNMCDRX7_1_dna/1029_JAD-T1-TDNA-1_HLNMCDRX7_1_dna.combined.counts.txt.gz: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:35:20 INFO  : Results/1029_BR1-T1-TDNA-1_HLNMCDRX7_1/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.pileup.txt: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions.txt: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/05/29 18:35:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780016498042_77711.log: Copied (new)
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2026/05/29 18:35:24 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
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2026/05/29 18:35:24 INFO  : ica_logs/out/Logs_Intermediates/DnaFastqValidation/DnaFastqValidation-20260529002856.log: Copied (new)
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2026/05/29 18:35:24 INFO  : Logs_Intermediates/Annotation/1047_MH-T1-TDNA-1_HLNMCDRX7_1_dna/1047_MH-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_Annotated.json.gz.jsi: Copied (new)
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2026/05/29 18:35:24 INFO  : ica_logs/out/Logs_Intermediates/Annotation/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529023432.log: Copied (new)
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2026/05/29 18:35:25 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
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2026/05/29 18:35:26 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:35:26 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.insert-stats.tab: Copied (new)
2026/05/29 18:35:26 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:35:26 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/05/29 18:35:26 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/05/29 18:35:26 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_output.json: Copied (new)
2026/05/29 18:35:26 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_log.txt: Copied (new)
2026/05/29 18:35:26 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/05/29 18:35:26 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:35:26 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:35:26 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:35:26 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.pileup.txt: Copied (new)
2026/05/29 18:35:26 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:35:26 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:35:26 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:35:26 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:35:26 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:35:26 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:35:26 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:35:27 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:35:27 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/05/29 18:35:27 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/05/29 18:35:27 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/05/29 18:35:27 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:35:27 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/05/29 18:35:27 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/05/29 18:35:27 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/05/29 18:35:27 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:35:27 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:35:27 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/05/29 18:35:27 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/05/29 18:35:27 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/05/29 18:35:27 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/05/29 18:35:27 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/05/29 18:35:27 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/05/29 18:35:27 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/05/29 18:35:27 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:35:27 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:35:27 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:35:27 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/05/29 18:35:27 INFO  : Results/659_eRe-T1-TDNA-1_HLNMCDRX7_1/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf: Copied (new)
2026/05/29 18:35:27 INFO  : Logs_Intermediates/Annotation/1047_MH-T1-TDNA-1_HLNMCDRX7_1_dna/1047_MH-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_Annotated.json.gz: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/05/29 18:35:28 INFO  : ica_logs/bpe1-433e7c51-e385-4edd-a85e-4fe1e7305621-1pre/2/stderr.mvtpp.log: Copied (new)
2026/05/29 18:35:28 INFO  : ica_logs/bpe1-433e7c51-e385-4edd-a85e-4fe1e7305621-1pre/2/stdout.mvtpp.log: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780014833248_6951.log: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/LrAnnotation/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna_DNAExonCNV_Annotated.json.gz: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/LrAnnotation/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna_DNAExonCNV_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780014833232_6951.log: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/LrAnnotation/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529025315.log: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/Tmb/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/Tmb/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/Tmb/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/Tmb/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/Tmb/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/Tmb/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.tmb.metrics.csv: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/Tmb/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions.txt: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/Tmb/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529011832.log: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/Tmb/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780023096319_307521.log: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/Tmb/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.tmb.trace.tsv: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/nextflow_work_logs/08/51dc5c3aa323e665159b234271b162/.command.err: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/Tmb/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780023096311_307521.log: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/nextflow_work_logs/08/51dc5c3aa323e665159b234271b162/.command.log: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/nextflow_work_logs/08/51dc5c3aa323e665159b234271b162/.command.out: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/nextflow_work_logs/08/51dc5c3aa323e665159b234271b162/.command.sh: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/nextflow_work_logs/08/51dc5c3aa323e665159b234271b162/.command.run: Copied (new)
2026/05/29 18:35:28 INFO  : Logs_Intermediates/FastqGeneration/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna_S7_L002_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:35:29 INFO  : Logs_Intermediates/MetricsOutput/1029_VYX-T1-TDNA-1_HLNMCDRX7_1/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_MetricsOutput.tsv: Copied (new)
2026/05/29 18:35:29 INFO  : ica_logs/out/Logs_Intermediates/Contamination/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529025043.log: Copied (new)
2026/05/29 18:35:29 INFO  : Logs_Intermediates/CombinedVariantOutput/1029_W0T-T1-TDNA-1_HLNMCDRX7_1/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_CombinedVariantOutput.tsv: Copied (new)
2026/05/29 18:35:29 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:35:29 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:35:29 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:35:29 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:35:29 INFO  : 
Transferred:   	   37.881 GiB / 383.096 GiB, 10%, 1.347 GiB/s, ETA 4m16s
Transferred:         2215 / 12311, 18%
Elapsed time:        30.0s
Transferring:
 * Logs_Intermediates/Fas…6_L001_R1_001.fastq.gz: 81% /1.537Gi, 46.624Mi/s, 6s
 * Logs_Intermediates/Fas…6_L001_R2_001.fastq.gz: 70% /1.500Gi, 37.984Mi/s, 12s
 * Logs_Intermediates/Fas…6_L002_R1_001.fastq.gz: 85% /1.492Gi, 48.553Mi/s, 4s
 * Logs_Intermediates/Fas…6_L002_R2_001.fastq.gz: 85% /1.455Gi, 46.512Mi/s, 4s
 * Logs_Intermediates/Fas…7_L001_R1_001.fastq.gz: 85% /1.311Gi, 41.773Mi/s, 4s
 * Logs_Intermediates/Fas…7_L001_R2_001.fastq.gz: 58% /1.341Gi, 27.379Mi/s, 20s
 * Logs_Intermediates/Fas…7_L002_R1_001.fastq.gz: 61% /1.269Gi, 27.274Mi/s, 18s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 25% /3.623Gi, 37.085Mi/s, 1m14s
 * Results/659_hv-T1-TDNA…dna.hard-filtered.gvcf: 62% /142.687Mi, 3.501Mi/s, 15s
 * Results/1029_P7H-T1-TD…dna.hard-filtered.gvcf: 87% /137.569Mi, 4.900Mi/s, 3s
 * Logs_Intermediates/Fas…8_L001_R1_001.fastq.gz: 73% /1.271Gi, 41.139Mi/s, 8s
 * Logs_Intermediates/Fas…8_L001_R2_001.fastq.gz: 75% /1.319Gi, 44.103Mi/s, 7s
 * Logs_Intermediates/Fas…8_L002_R1_001.fastq.gz: 88% /1.230Gi, 48.733Mi/s, 2s
 * Logs_Intermediates/Fas…8_L002_R2_001.fastq.gz: 83% /1.279Gi, 44.197Mi/s, 5s
 * Results/659_Em-T1-TDNA…dna.hard-filtered.gvcf: 62% /137.144Mi, 3.503Mi/s, 14s
 * Results/1267_DZ-T1-TDN…dna.hard-filtered.gvcf: 64% /137.475Mi, 3.614Mi/s, 13s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 26% /3.657Gi, 41.140Mi/s, 1m6s
 * Results/1029_VYX-T1-TD…dna.hard-filtered.gvcf: 37% /137.649Mi, 2.290Mi/s, 37s
 * Logs_Intermediates/Fas…9_L001_R1_001.fastq.gz: 55% /1.632Gi, 44.748Mi/s, 16s
 * Logs_Intermediates/Fas…9_L001_R2_001.fastq.gz: 36% /1.709Gi, 31.960Mi/s, 34s
 * Logs_Intermediates/Fas…9_L002_R1_001.fastq.gz: 37% /1.598Gi, 29.158Mi/s, 35s
 * Logs_Intermediates/Fas…9_L002_R2_001.fastq.gz: 38% /1.675Gi, 31.655Mi/s, 33s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 19% /3.766Gi, 40.012Mi/s, 1m17s
 * Logs_Intermediates/Fas…0_L001_R1_001.fastq.gz: 50% /1.306Gi, 39.500Mi/s, 16s
 * Logs_Intermediates/Fas…0_L001_R2_001.fastq.gz: 48% /1.340Gi, 37.500Mi/s, 18s
 * Logs_Intermediates/Fas…0_L002_R1_001.fastq.gz: 44% /1.276Gi, 33.945Mi/s, 21s
 * Logs_Intermediates/Fas…0_L002_R2_001.fastq.gz: 45% /1.311Gi, 35.750Mi/s, 20s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 13% /4.486Gi, 38.000Mi/s, 1m44s
 * Logs_Intermediates/Fas…1_L001_R1_001.fastq.gz: 31% /1.578Gi, 34.133Mi/s, 32s
 * Logs_Intermediates/Fas…1_L001_R2_001.fastq.gz: 33% /1.492Gi, 34.133Mi/s, 29s
 * Logs_Intermediates/Fas…1_L002_R1_001.fastq.gz: 39% /1.505Gi, 39.506Mi/s, 23s
 * Logs_Intermediates/Fas…1_L002_R2_001.fastq.gz: 35% /1.421Gi, 34.133Mi/s, 27s
 * Logs_Intermediates/Fas…2_L001_R1_001.fastq.gz: 38% /1.458Gi, 41.143Mi/s, 22s
 * Logs_Intermediates/Fas…2_L001_R2_001.fastq.gz: 35% /1.239Gi, 31.415Mi/s, 26s
 * Logs_Intermediates/Fas…2_L002_R1_001.fastq.gz: 50% /1.366Gi, 50.286Mi/s, 13s
 * Logs_Intermediates/Fas…2_L002_R2_001.fastq.gz: 43% /1.159Gi, 36.571Mi/s, 18s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 16% /3.694Gi, 43.429Mi/s, 1m13s
 * Logs_Intermediates/Fas…3_L001_R1_001.fastq.gz: 23% /1.417Gi, 26.667Mi/s, 41s
 * Logs_Intermediates/Fas…3_L001_R2_001.fastq.gz: 21% /1.459Gi, 26.667Mi/s, 44s
 * Logs_Intermediates/Fas…3_L002_R1_001.fastq.gz: 34% /1.361Gi, 37.333Mi/s, 24s
 * Logs_Intermediates/Fas…3_L002_R2_001.fastq.gz: 24% /1.402Gi, 29.333Mi/s, 36s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam:  9% /4.157Gi, 32.000Mi/s, 2m0s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam:  6% /3.803Gi, 24.889Mi/s, 2m26s
 * Logs_Intermediates/Fas…4_L001_R1_001.fastq.gz: 18% /1.447Gi, 31.312Mi/s, 38s
 * Logs_Intermediates/Fas…4_L001_R2_001.fastq.gz: 20% /1.500Gi, 40.000Mi/s, 30s
 * Logs_Intermediates/Fas…4_L002_R1_001.fastq.gz: 15% /1.407Gi, 28.000Mi/s, 43s
 * Logs_Intermediates/Fas…4_L002_R2_001.fastq.gz: 10% /1.459Gi, 20.000Mi/s, 1m6s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam:  8% /3.751Gi, 39.062Mi/s, 1m30s
 * Logs_Intermediates/Fas…5_L001_R1_001.fastq.gz:  5% /1.583Gi, 19.200Mi/s, 1m19s
 * Logs_Intermediates/Fas…5_L001_R2_001.fastq.gz: 11% /1.645Gi, 32.000Mi/s, 46s
 * Logs_Intermediates/Fas…5_L002_R1_001.fastq.gz:  8% /1.539Gi, 25.600Mi/s, 56s
 * Logs_Intermediates/Fas…5_L002_R2_001.fastq.gz:  9% /1.601Gi, 25.600Mi/s, 57s
 * Logs_Intermediates/Dna…combined.counts.txt.gz: 46% /23.642Mi, 2.199Mi/s, 5s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam:  1% /4.148Gi, 21.333Mi/s, 3m16s
 * Logs_Intermediates/Dna….hard-filtered.gvcf.gz: 49% /18.030Mi, 2.998Mi/s, 3s
 * Logs_Intermediates/Tmb…_TMB_Annotated.json.gz: 51% /5.811Mi, 0/s, -
 * Logs_Intermediates/Fas…6_L001_R1_001.fastq.gz:  0% /1.584Gi, 0/s, -
 * Logs_Intermediates/Fas…6_L001_R2_001.fastq.gz:  0% /1.639Gi, 0/s, -
 * Logs_Intermediates/Fas…6_L002_R1_001.fastq.gz:  0% /1.547Gi, 0/s, -
 * Logs_Intermediates/Fas…6_L002_R2_001.fastq.gz:  0% /1.602Gi, 0/s, -
 * Logs_Intermediates/Dna…combined.counts.txt.gz: transferring
 * Logs_Intermediates/Dna…_dna.improper.pairs.bw:  0% /304.536Ki, 0/s, -
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.seg: transferring
 * Logs_Intermediates/Dna…HLNMCDRX7_1_dna.seg.bw: transferring

2026/05/29 18:35:29 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:35:29 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:35:29 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:35:29 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:35:29 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:35:29 INFO  : Logs_Intermediates/Tmb/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz: Copied (new)
2026/05/29 18:35:29 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:35:29 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/05/29 18:35:29 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:35:30 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:35:30 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:35:30 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/05/29 18:35:30 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:35:30 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780020764929_225888.log: Copied (new)
2026/05/29 18:35:30 INFO  : Logs_Intermediates/nextflow_work_logs/07/c080f9e0034c5f44ec2e3feacecba7/.command.err: Copied (new)
2026/05/29 18:35:30 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780020764922_225888.log: Copied (new)
2026/05/29 18:35:30 INFO  : Logs_Intermediates/nextflow_work_logs/07/c080f9e0034c5f44ec2e3feacecba7/.command.log: Copied (new)
2026/05/29 18:35:30 INFO  : Logs_Intermediates/nextflow_work_logs/07/c080f9e0034c5f44ec2e3feacecba7/.command.out: Copied (new)
2026/05/29 18:35:30 INFO  : ica_logs/work/4c/88cf95af66ba63afc5963ce3c5aac2/output/Logs/Errors.log: Copied (new)
2026/05/29 18:35:30 INFO  : ica_logs/work/4c/88cf95af66ba63afc5963ce3c5aac2/output/Logs/Info.log: Copied (new)
2026/05/29 18:35:30 INFO  : Logs_Intermediates/nextflow_work_logs/07/c080f9e0034c5f44ec2e3feacecba7/.command.run: Copied (new)
2026/05/29 18:35:30 INFO  : Logs_Intermediates/nextflow_work_logs/07/c080f9e0034c5f44ec2e3feacecba7/.command.sh: Copied (new)
2026/05/29 18:35:30 INFO  : ica_logs/work/4c/88cf95af66ba63afc5963ce3c5aac2/output/Logs/Warnings.log: Copied (new)
2026/05/29 18:35:30 INFO  : Logs_Intermediates/DnaCoverageReports/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.gene_cov_report.tsv: Copied (new)
2026/05/29 18:35:30 INFO  : Logs_Intermediates/DnaCoverageReports/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/05/29 18:35:30 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna.combined.counts.txt.gz: Copied (new)
2026/05/29 18:35:30 INFO  : Logs_Intermediates/DnaCoverageReports/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.exon_cov_report.tsv: Copied (new)
2026/05/29 18:35:30 INFO  : Logs_Intermediates/LrCalculator/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
2026/05/29 18:35:30 INFO  : Logs_Intermediates/LrCalculator/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529025720.log: Copied (new)
2026/05/29 18:35:30 INFO  : Logs_Intermediates/Contamination/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna_contamination.json: Copied (new)
2026/05/29 18:35:30 INFO  : Logs_Intermediates/Annotation/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:35:30 INFO  : Logs_Intermediates/Annotation/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529031113.log: Copied (new)
2026/05/29 18:35:30 INFO  : Logs_Intermediates/Contamination/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529030615.log: Copied (new)
2026/05/29 18:35:31 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.bam.md5sum: Copied (new)
2026/05/29 18:35:31 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:35:31 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:35:31 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.gff3: Copied (new)
2026/05/29 18:35:31 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:35:31 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/05/29 18:35:31 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.bam.bai: Copied (new)
2026/05/29 18:35:31 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/05/29 18:35:31 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/05/29 18:35:31 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/05/29 18:35:31 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:35:31 INFO  : Logs_Intermediates/Annotation/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_Annotated.json.gz: Copied (new)
2026/05/29 18:35:31 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
2026/05/29 18:35:31 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/05/29 18:35:32 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.exon_hist.csv: Copied (new)
2026/05/29 18:35:32 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/05/29 18:35:32 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/05/29 18:35:32 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/05/29 18:35:32 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.fastq_list.csv: Copied (new)
2026/05/29 18:35:32 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:35:32 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/05/29 18:35:32 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/05/29 18:35:32 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/05/29 18:35:32 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/05/29 18:35:32 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/05/29 18:35:32 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/05/29 18:35:32 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/05/29 18:35:32 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/05/29 18:35:32 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:35:32 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:35:32 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:35:32 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.insert-stats.tab: Copied (new)
2026/05/29 18:35:32 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:35:32 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/05/29 18:35:32 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/05/29 18:35:32 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_output.json: Copied (new)
2026/05/29 18:35:32 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/05/29 18:35:33 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_log.txt: Copied (new)
2026/05/29 18:35:33 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:35:33 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:35:33 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:35:33 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.pileup.txt: Copied (new)
2026/05/29 18:35:33 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:35:33 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:35:33 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:35:33 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:35:33 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:35:33 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:35:33 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:35:33 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/05/29 18:35:33 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/05/29 18:35:33 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:35:33 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:35:33 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/05/29 18:35:33 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/05/29 18:35:33 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/05/29 18:35:33 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/05/29 18:35:34 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:35:34 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:35:34 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/05/29 18:35:34 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/05/29 18:35:34 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/05/29 18:35:34 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/05/29 18:35:34 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/05/29 18:35:34 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/05/29 18:35:34 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/05/29 18:35:34 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:35:34 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:35:34 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.combined.counts.txt.gz: Copied (new)
2026/05/29 18:35:34 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:35:34 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/05/29 18:35:34 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/05/29 18:35:34 INFO  : Logs_Intermediates/FastqGeneration/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna_S8_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:35:34 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/05/29 18:35:34 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/05/29 18:35:34 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/05/29 18:35:34 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/05/29 18:35:34 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/05/29 18:35:34 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/05/29 18:35:34 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/05/29 18:35:34 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/05/29 18:35:35 INFO  : ica_logs/out/Logs_Intermediates/Annotation/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529025311.log: Copied (new)
2026/05/29 18:35:35 INFO  : ica_logs/bpe1-433e7c51-e385-4edd-a85e-4fe1e7305621-1pre/20/stderr.mvtpp.log: Copied (new)
2026/05/29 18:35:35 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions.txt: Copied (new)
2026/05/29 18:35:35 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:35:35 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780016999220_91756.log: Copied (new)
2026/05/29 18:35:35 INFO  : Logs_Intermediates/LrAnnotation/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna_DNAExonCNV_Annotated.json.gz: Copied (new)
2026/05/29 18:35:35 INFO  : Logs_Intermediates/LrAnnotation/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna_DNAExonCNV_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:35:35 INFO  : ica_logs/bpe1-433e7c51-e385-4edd-a85e-4fe1e7305621-1pre/20/stdout.mvtpp.log: Copied (new)
2026/05/29 18:35:35 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
2026/05/29 18:35:35 INFO  : Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780016999235_91756.log: Copied (new)
2026/05/29 18:35:35 INFO  : Logs_Intermediates/LrAnnotation/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529025313.log: Copied (new)
2026/05/29 18:35:35 INFO  : Logs_Intermediates/Gis/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:35:35 INFO  : Logs_Intermediates/Gis/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna.abcn_genes.tsv: Copied (new)
2026/05/29 18:35:35 INFO  : ica_logs/out/Logs_Intermediates/DnaCoverageReports/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/05/29 18:35:35 INFO  : Logs_Intermediates/Gis/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna.abcn_annotated.vcf: Copied (new)
2026/05/29 18:35:35 INFO  : Logs_Intermediates/CombinedVariantOutput/1047_CQ-T1-TDNA-1_HLNMCDRX7_1/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_CombinedVariantOutput.tsv: Copied (new)
2026/05/29 18:35:35 INFO  : Logs_Intermediates/Gis/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna.baf.bedgraph.gz.gzi: Copied (new)
2026/05/29 18:35:35 INFO  : Logs_Intermediates/Gis/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna.gis.json: Copied (new)
2026/05/29 18:35:35 INFO  : Logs_Intermediates/Gis/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:35:35 INFO  : Logs_Intermediates/Gis/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna.baf.bedgraph.gz: Copied (new)
2026/05/29 18:35:35 INFO  : Logs_Intermediates/Gis/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780023149231_287080.log: Copied (new)
2026/05/29 18:35:35 INFO  : Logs_Intermediates/Gis/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780023149224_287080.log: Copied (new)
2026/05/29 18:35:35 INFO  : Logs_Intermediates/Gis/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna_bAllele.tsv: Copied (new)
2026/05/29 18:35:35 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:35:35 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:35:35 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:35:36 INFO  : Logs_Intermediates/Gis/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna_raw.tsv: Copied (new)
2026/05/29 18:35:36 INFO  : Logs_Intermediates/Gis/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna_logRatio.original.tsv: Copied (new)
2026/05/29 18:35:36 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780014817656_7192.log: Copied (new)
2026/05/29 18:35:36 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780014817641_7192.log: Copied (new)
2026/05/29 18:35:36 INFO  : Logs_Intermediates/Gis/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna_logRatio.tsv: Copied (new)
2026/05/29 18:35:36 INFO  : Logs_Intermediates/Tmb/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:35:36 INFO  : Logs_Intermediates/Tmb/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
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2026/05/29 18:35:37 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
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2026/05/29 18:35:37 INFO  : Logs_Intermediates/FastqGeneration/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna_S8_L002_R2_001.fastq.gz: Multi-thread Copied (new)
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2026/05/29 18:35:38 INFO  : Logs_Intermediates/FastqGeneration/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna_S8_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:35:38 INFO  : Logs_Intermediates/FastqGeneration/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna_S6_L001_R1_001.fastq.gz: Multi-thread Copied (new)
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2026/05/29 18:35:40 INFO  : Logs_Intermediates/FastqGeneration/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna_S6_L002_R2_001.fastq.gz: Multi-thread Copied (new)
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2026/05/29 18:35:40 INFO  : Logs_Intermediates/nextflow_work_logs/07/dd97c3f02ed7db32cb6f251ab0a257/.command.err: Copied (new)
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2026/05/29 18:35:40 INFO  : Logs_Intermediates/LrCalculator/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
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2026/05/29 18:35:41 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.fastqc_metrics.csv: Copied (new)
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2026/05/29 18:35:41 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/05/29 18:35:41 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/05/29 18:35:41 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/05/29 18:35:41 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/05/29 18:35:41 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/05/29 18:35:41 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:35:41 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:35:41 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:35:41 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.insert-stats.tab: Copied (new)
2026/05/29 18:35:41 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/05/29 18:35:41 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:35:41 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/05/29 18:35:41 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_output.json: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_log.txt: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/Annotation/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_Annotated.json.gz: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.pileup.txt: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/05/29 18:35:42 INFO  : Results/659_hv-T1-TDNA-1_HLNMCDRX7_1/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/05/29 18:35:42 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/05/29 18:35:43 INFO  : Logs_Intermediates/Tmb/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:35:43 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780017656281_108700.log: Copied (new)
2026/05/29 18:35:43 INFO  : Logs_Intermediates/Tmb/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:35:43 INFO  : Logs_Intermediates/Tmb/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:35:43 INFO  : Logs_Intermediates/Tmb/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:35:43 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions.txt: Copied (new)
2026/05/29 18:35:43 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780017656265_108700.log: Copied (new)
2026/05/29 18:35:43 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:35:43 INFO  : Logs_Intermediates/Tmb/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529012936.log: Copied (new)
2026/05/29 18:35:43 INFO  : Logs_Intermediates/Tmb/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780023337854_311895.log: Copied (new)
2026/05/29 18:35:43 INFO  : Logs_Intermediates/Tmb/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780023337846_311895.log: Copied (new)
2026/05/29 18:35:43 INFO  : Logs_Intermediates/Tmb/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.tmb.metrics.csv: Copied (new)
2026/05/29 18:35:43 INFO  : Logs_Intermediates/Tmb/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:35:43 INFO  : ica_logs/bpe1-433e7c51-e385-4edd-a85e-4fe1e7305621-1pre/3/stderr.mvtpp.log: Copied (new)
2026/05/29 18:35:43 INFO  : Logs_Intermediates/Tmb/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.tmb.trace.tsv: Copied (new)
2026/05/29 18:35:43 INFO  : Logs_Intermediates/Tmb/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:35:43 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
2026/05/29 18:35:43 INFO  : ica_logs/work/81/da35a2d041cf5bdfce4e751aa08a80/logs/Lane_1/Errors.log: Copied (new)
2026/05/29 18:35:43 INFO  : ica_logs/bpe1-433e7c51-e385-4edd-a85e-4fe1e7305621-1pre/3/stdout.mvtpp.log: Copied (new)
2026/05/29 18:35:43 INFO  : ica_logs/work/81/da35a2d041cf5bdfce4e751aa08a80/logs/Lane_1/Warnings.log: Copied (new)
2026/05/29 18:35:43 INFO  : ica_logs/out/Logs_Intermediates/DnaCoverageReports/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/05/29 18:35:43 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:35:43 INFO  : ica_logs/work/81/da35a2d041cf5bdfce4e751aa08a80/logs/Lane_1/Info.log: Copied (new)
2026/05/29 18:35:43 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:35:43 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:35:43 INFO  : Logs_Intermediates/DnaCoverageReports/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna.gene_cov_report.tsv: Copied (new)
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2026/05/29 18:35:56 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/00/ad6600d256742a6219ede6c87de4ed/.command.run: Copied (new)
2026/05/29 18:35:56 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/00/ad6600d256742a6219ede6c87de4ed/.command.sh: Copied (new)
2026/05/29 18:35:56 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/00/ad6600d256742a6219ede6c87de4ed/.exitcode: Copied (new)
2026/05/29 18:35:56 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/00/ad6600d256742a6219ede6c87de4ed/.command.err: Copied (new)
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2026/05/29 18:35:56 INFO  : ica_logs/out/Logs_Intermediates/Contamination/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529030616.log: Copied (new)
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2026/05/29 18:35:56 INFO  : Logs_Intermediates/Contamination/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna_contamination.json: Copied (new)
2026/05/29 18:35:56 INFO  : Logs_Intermediates/DnaDragenCaller/1047_MH-T1-TDNA-1_HLNMCDRX7_1_dna/1047_MH-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
2026/05/29 18:35:56 INFO  : Logs_Intermediates/Contamination/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529032455.log: Copied (new)
2026/05/29 18:35:56 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:35:56 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:35:56 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:35:56 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:35:56 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:35:56 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:35:56 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
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2026/05/29 18:35:56 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/05/29 18:35:56 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
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2026/05/29 18:35:56 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:35:56 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/05/29 18:35:56 INFO  : Logs_Intermediates/FastqGeneration/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna_S6_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:35:56 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:35:56 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780022792096_272923.log: Copied (new)
2026/05/29 18:35:57 INFO  : ica_logs/out/Logs_Intermediates/Gis/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780019524613_184909.log: Copied (new)
2026/05/29 18:35:57 INFO  : ica_logs/out/Logs_Intermediates/MetricsOutput/MetricsOutput-20260529033239.log: Copied (new)
2026/05/29 18:35:57 INFO  : Logs_Intermediates/LrCalculator/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529031223.log: Copied (new)
2026/05/29 18:35:57 INFO  : ica_logs/out/Logs_Intermediates/Gis/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780019524606_184909.log: Copied (new)
2026/05/29 18:35:57 INFO  : Logs_Intermediates/LrCalculator/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
2026/05/29 18:35:57 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780022792088_272923.log: Copied (new)
2026/05/29 18:35:57 INFO  : Logs_Intermediates/nextflow_work_logs/0f/2cfff0008453e186acab014288ba7d/.command.log: Copied (new)
2026/05/29 18:35:57 INFO  : Logs_Intermediates/nextflow_work_logs/0f/2cfff0008453e186acab014288ba7d/.command.err: Copied (new)
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2026/05/29 18:35:57 INFO  : Logs_Intermediates/Annotation/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:35:57 INFO  : Logs_Intermediates/Annotation/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529025646.log: Copied (new)
2026/05/29 18:35:57 INFO  : Logs_Intermediates/Gis/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:35:57 INFO  : Logs_Intermediates/Gis/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.baf.bedgraph.gz.gzi: Copied (new)
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2026/05/29 18:35:57 INFO  : Logs_Intermediates/Gis/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
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2026/05/29 18:35:57 INFO  : Logs_Intermediates/Gis/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780021115673_220154.log: Copied (new)
2026/05/29 18:35:57 INFO  : Logs_Intermediates/Gis/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780021115665_220154.log: Copied (new)
2026/05/29 18:35:57 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/00/7f94af305bb2fba3246ab7a6779f85/.command.begin: Copied (new)
2026/05/29 18:35:57 INFO  : Logs_Intermediates/Annotation/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_Annotated.json.gz: Copied (new)
2026/05/29 18:35:57 INFO  : ica_logs/out/Logs_Intermediates/Annotation/1029_JAD-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529024925.log: Copied (new)
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2026/05/29 18:35:57 INFO  : Logs_Intermediates/Gis/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna_logRatio.original.tsv: Copied (new)
2026/05/29 18:35:57 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna.combined.counts.txt.gz: Copied (new)
2026/05/29 18:35:57 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/00/7f94af305bb2fba3246ab7a6779f85/.command.log: Copied (new)
2026/05/29 18:35:57 INFO  : Logs_Intermediates/FastqGeneration/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna_S12_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:35:57 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/00/7f94af305bb2fba3246ab7a6779f85/.exitcode: Copied (new)
2026/05/29 18:35:57 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/00/7f94af305bb2fba3246ab7a6779f85/.command.run: Copied (new)
2026/05/29 18:35:57 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/00/7f94af305bb2fba3246ab7a6779f85/.command.sh: Copied (new)
2026/05/29 18:35:57 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/00/7f94af305bb2fba3246ab7a6779f85/.command.out: Copied (new)
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2026/05/29 18:35:58 INFO  : ica_logs/work/28/ec8f3c5200742ab52ef67ef2e63b4d/work/73/2bc7042be6dfc9bba9a576b5427188/.command.begin: Copied (new)
2026/05/29 18:35:58 INFO  : ica_logs/work/28/ec8f3c5200742ab52ef67ef2e63b4d/work/73/2bc7042be6dfc9bba9a576b5427188/.command.err: Copied (new)
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2026/05/29 18:35:58 INFO  : ica_logs/work/28/ec8f3c5200742ab52ef67ef2e63b4d/work/73/2bc7042be6dfc9bba9a576b5427188/.exitcode: Copied (new)
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2026/05/29 18:35:58 INFO  : Logs_Intermediates/nextflow_work_logs/0c/5e73ac72a3345167d7fbfa7fa5bc6a/.command.err: Copied (new)
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2026/05/29 18:35:58 INFO  : ica_logs/work/28/ec8f3c5200742ab52ef67ef2e63b4d/work/73/2bc7042be6dfc9bba9a576b5427188/.command.run: Copied (new)
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2026/05/29 18:35:58 INFO  : Logs_Intermediates/DnaCoverageReports/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.gene_cov_report.tsv: Copied (new)
2026/05/29 18:35:58 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/07/2616c2dde48118a5f9ec0c50783e06/.command.err: Copied (new)
2026/05/29 18:35:58 INFO  : Logs_Intermediates/DnaCoverageReports/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/gen_coverage_reports.log: Copied (new)
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2026/05/29 18:35:58 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/07/2616c2dde48118a5f9ec0c50783e06/.command.log: Copied (new)
2026/05/29 18:35:58 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/07/2616c2dde48118a5f9ec0c50783e06/.command.sh: Copied (new)
2026/05/29 18:35:58 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/07/2616c2dde48118a5f9ec0c50783e06/.exitcode: Copied (new)
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2026/05/29 18:35:58 INFO  : ica_logs/bpe1-433e7c51-e385-4edd-a85e-4fe1e7305621-1pre/6/stderr.mvtpp.log: Copied (new)
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2026/05/29 18:35:58 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/07/2616c2dde48118a5f9ec0c50783e06/.command.trace: Copied (new)
2026/05/29 18:35:58 INFO  : Logs_Intermediates/Gis/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna_raw.tsv: Copied (new)
2026/05/29 18:35:58 INFO  : ica_logs/bpe1-433e7c51-e385-4edd-a85e-4fe1e7305621-1pre/6/stdout.mvtpp.log: Copied (new)
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2026/05/29 18:35:58 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/work/52/aa95fb70a281f8031753f9ca90fdc8/.command.log: Copied (new)
2026/05/29 18:35:58 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/work/52/aa95fb70a281f8031753f9ca90fdc8/.command.run: Copied (new)
2026/05/29 18:35:58 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/work/52/aa95fb70a281f8031753f9ca90fdc8/.command.sh: Copied (new)
2026/05/29 18:35:58 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/work/52/aa95fb70a281f8031753f9ca90fdc8/.exitcode: Copied (new)
2026/05/29 18:35:58 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/work/52/aa95fb70a281f8031753f9ca90fdc8/.command.out: Copied (new)
2026/05/29 18:35:58 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:35:58 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/work/52/aa95fb70a281f8031753f9ca90fdc8/.command.trace: Copied (new)
2026/05/29 18:35:58 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:35:58 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:35:58 INFO  : Logs_Intermediates/Tmb/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:35:58 INFO  : Logs_Intermediates/Tmb/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:35:58 INFO  : Logs_Intermediates/Tmb/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:35:58 INFO  : Logs_Intermediates/Tmb/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:35:58 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780018661178_138766.log: Copied (new)
2026/05/29 18:35:58 INFO  : Logs_Intermediates/Tmb/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:35:58 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780018661194_138766.log: Copied (new)
2026/05/29 18:35:58 INFO  : Logs_Intermediates/Tmb/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna.tmb.metrics.csv: Copied (new)
2026/05/29 18:35:58 INFO  : Logs_Intermediates/Tmb/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:35:59 INFO  : Logs_Intermediates/Tmb/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529013011.log: Copied (new)
2026/05/29 18:35:59 INFO  : Logs_Intermediates/Tmb/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780024271982_322578.log: Copied (new)
2026/05/29 18:35:59 INFO  : Logs_Intermediates/Tmb/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna.tmb.trace.tsv: Copied (new)
2026/05/29 18:35:59 INFO  : Logs_Intermediates/Tmb/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780024271974_322578.log: Copied (new)
2026/05/29 18:35:59 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/01/b09ee4f74ea6720a135a95f8582289/.command.begin: Copied (new)
2026/05/29 18:35:59 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/01/b09ee4f74ea6720a135a95f8582289/.command.err: Copied (new)
2026/05/29 18:35:59 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/01/b09ee4f74ea6720a135a95f8582289/.command.log: Copied (new)
2026/05/29 18:35:59 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/01/b09ee4f74ea6720a135a95f8582289/.command.run: Copied (new)
2026/05/29 18:35:59 INFO  : 
Transferred:   	   84.531 GiB / 383.125 GiB, 22%, 1.523 GiB/s, ETA 3m16s
Transferred:         3113 / 13209, 24%
Elapsed time:       1m0.0s
Transferring:
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 46% /3.623Gi, 29.001Mi/s, 1m7s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 49% /3.657Gi, 31.614Mi/s, 59s
 * Results/1029_VYX-T1-TD…dna.hard-filtered.gvcf: 87% /137.649Mi, 2.326Mi/s, 7s
 * Logs_Intermediates/Fas…9_L001_R2_001.fastq.gz: 91% /1.709Gi, 31.319Mi/s, 4s
 * Logs_Intermediates/Fas…9_L002_R1_001.fastq.gz: 98% /1.598Gi, 30.327Mi/s, 1s
 * Logs_Intermediates/Fas…9_L002_R2_001.fastq.gz: 89% /1.675Gi, 28.668Mi/s, 6s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 42% /3.766Gi, 29.759Mi/s, 1m13s
 * Logs_Intermediates/Fas…0_L001_R1_001.fastq.gz: 97% /1.306Gi, 18.959Mi/s, 1s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 29% /4.486Gi, 26.257Mi/s, 2m2s
 * Logs_Intermediates/Fas…1_L001_R1_001.fastq.gz: 85% /1.578Gi, 29.524Mi/s, 8s
 * Logs_Intermediates/Fas…1_L001_R2_001.fastq.gz: 87% /1.492Gi, 28.995Mi/s, 6s
 * Logs_Intermediates/Fas…1_L002_R1_001.fastq.gz: 97% /1.505Gi, 30.718Mi/s, 1s
 * Logs_Intermediates/Fas…1_L002_R2_001.fastq.gz: 98% /1.421Gi, 28.044Mi/s, 0s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 38% /3.694Gi, 31.933Mi/s, 1m12s
 * Logs_Intermediates/Fas…3_L001_R1_001.fastq.gz: 79% /1.417Gi, 25.572Mi/s, 11s
 * Logs_Intermediates/Fas…3_L001_R2_001.fastq.gz: 66% /1.459Gi, 22.399Mi/s, 22s
 * Logs_Intermediates/Fas…3_L002_R1_001.fastq.gz: 91% /1.361Gi, 28.151Mi/s, 4s
 * Logs_Intermediates/Fas…3_L002_R2_001.fastq.gz: 84% /1.402Gi, 27.008Mi/s, 8s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 30% /4.157Gi, 31.454Mi/s, 1m34s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 32% /3.803Gi, 33.059Mi/s, 1m20s
 * Logs_Intermediates/Fas…4_L001_R1_001.fastq.gz: 82% /1.447Gi, 31.970Mi/s, 8s
 * Logs_Intermediates/Fas…4_L001_R2_001.fastq.gz: 89% /1.500Gi, 36.063Mi/s, 4s
 * Logs_Intermediates/Fas…4_L002_R1_001.fastq.gz: 79% /1.407Gi, 32.274Mi/s, 8s
 * Logs_Intermediates/Fas…4_L002_R2_001.fastq.gz: 74% /1.459Gi, 32.016Mi/s, 11s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 30% /3.751Gi, 27.210Mi/s, 1m37s
 * Logs_Intermediates/Fas…5_L001_R1_001.fastq.gz: 67% /1.583Gi, 30.751Mi/s, 17s
 * Logs_Intermediates/Fas…5_L001_R2_001.fastq.gz: 51% /1.645Gi, 20.636Mi/s, 39s
 * Logs_Intermediates/Fas…5_L002_R1_001.fastq.gz: 62% /1.539Gi, 30.550Mi/s, 19s
 * Logs_Intermediates/Fas…5_L002_R2_001.fastq.gz: 62% /1.601Gi, 29.005Mi/s, 21s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 17% /4.148Gi, 20.446Mi/s, 2m51s
 * Logs_Intermediates/Fas…6_L001_R1_001.fastq.gz: 50% /1.584Gi, 27.432Mi/s, 29s
 * Logs_Intermediates/Fas…6_L001_R2_001.fastq.gz: 53% /1.639Gi, 27.666Mi/s, 28s
 * Logs_Intermediates/Fas…6_L002_R1_001.fastq.gz: 64% /1.547Gi, 32.655Mi/s, 17s
 * Logs_Intermediates/Fas…6_L002_R2_001.fastq.gz: 66% /1.602Gi, 35.548Mi/s, 15s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 18% /4.633Gi, 29.545Mi/s, 2m11s
 * Logs_Intermediates/Fas…7_L001_R1_001.fastq.gz: 46% /1.606Gi, 31.878Mi/s, 27s
 * Logs_Intermediates/Fas…7_L001_R2_001.fastq.gz: 44% /1.682Gi, 33.021Mi/s, 28s
 * Logs_Intermediates/Fas…7_L002_R1_001.fastq.gz: 40% /1.560Gi, 28.546Mi/s, 33s
 * Logs_Intermediates/Fas…7_L002_R2_001.fastq.gz: 45% /1.636Gi, 34.250Mi/s, 26s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 11% /4.466Gi, 24.786Mi/s, 2m43s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 14% /4.678Gi, 35.633Mi/s, 1m55s
 * Logs_Intermediates/Fas…1_L001_R1_001.fastq.gz: 23% /1.591Gi, 25.600Mi/s, 48s
 * Logs_Intermediates/Fas…1_L001_R2_001.fastq.gz: 31% /1.490Gi, 29.867Mi/s, 35s
 * Logs_Intermediates/Fas…1_L002_R1_001.fastq.gz: 31% /1.500Gi, 29.867Mi/s, 35s
 * Logs_Intermediates/Fas…1_L002_R2_001.fastq.gz: 28% /1.405Gi, 27.733Mi/s, 36s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam:  7% /4.499Gi, 24.615Mi/s, 2m52s
 * Logs_Intermediates/Fas…0_L001_R1_001.fastq.gz: 11% /1.628Gi, 19.200Mi/s, 1m16s
 * Logs_Intermediates/Fas…0_L001_R2_001.fastq.gz: 20% /1.664Gi, 35.200Mi/s, 38s
 * Logs_Intermediates/Fas…0_L002_R1_001.fastq.gz: 15% /1.575Gi, 25.600Mi/s, 52s
 * Logs_Intermediates/Fas…0_L002_R2_001.fastq.gz: 19% /1.610Gi, 28.800Mi/s, 46s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam:  4% /4.415Gi, 27.429Mi/s, 2m37s
 * Logs_Intermediates/Fas…2_L001_R1_001.fastq.gz:  4% /1.981Gi, 24.000Mi/s, 1m20s
 * Logs_Intermediates/Fas…2_L001_R2_001.fastq.gz:  6% /2.050Gi, 32.000Mi/s, 1m1s
 * Logs_Intermediates/Fas…2_L002_R1_001.fastq.gz:  4% /1.938Gi, 10.667Mi/s, 2m57s
 * Logs_Intermediates/Fas…2_L002_R2_001.fastq.gz:  4% /2.006Gi, 10.667Mi/s, 3m4s
 * Logs_Intermediates/Tmb…_TMB_Annotated.json.gz: 87% /4.553Mi, 0/s, -
 * Logs_Intermediates/Fas…7_L001_R1_001.fastq.gz:  0% /1.803Gi, 0/s, -
 * Logs_Intermediates/Fas…7_L001_R2_001.fastq.gz:  0% /1.851Gi, 0/s, -
 * Logs_Intermediates/Fas…7_L002_R1_001.fastq.gz:  0% /1.768Gi, 0/s, -
 * Logs_Intermediates/Fas…7_L002_R2_001.fastq.gz:  0% /1.817Gi, 0/s, -
 * ica_logs/work/3b/e421b…5f8582289/.command.out: 81% /78.314Ki, 0/s, -
 * ica_logs/work/3b/e421b…95f8582289/.command.sh:100% /1.759Ki, 0/s, -
 * ica_logs/work/3b/e421b…8582289/.command.trace: transferring
 * ica_logs/work/3b/e421b…5a95f8582289/.exitcode: transferring

2026/05/29 18:35:59 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/01/b09ee4f74ea6720a135a95f8582289/.command.sh: Copied (new)
2026/05/29 18:35:59 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/01/b09ee4f74ea6720a135a95f8582289/.command.out: Copied (new)
2026/05/29 18:35:59 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/01/b09ee4f74ea6720a135a95f8582289/.command.trace: Copied (new)
2026/05/29 18:35:59 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/01/b09ee4f74ea6720a135a95f8582289/.exitcode: Copied (new)
2026/05/29 18:35:59 INFO  : Logs_Intermediates/Tmb/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz: Copied (new)
2026/05/29 18:35:59 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780022223197_276038.log: Copied (new)
2026/05/29 18:35:59 INFO  : Logs_Intermediates/LrAnnotation/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna_DNAExonCNV_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:35:59 INFO  : ica_logs/out/Logs_Intermediates/DnaCoverageReports/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/05/29 18:35:59 INFO  : Logs_Intermediates/LrAnnotation/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna_DNAExonCNV_Annotated.json.gz: Copied (new)
2026/05/29 18:35:59 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/44/206b4b250b2b772022116e6ca66819/.command.begin: Copied (new)
2026/05/29 18:35:59 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/44/206b4b250b2b772022116e6ca66819/.command.env: Copied (new)
2026/05/29 18:35:59 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/44/206b4b250b2b772022116e6ca66819/.command.err: Copied (new)
2026/05/29 18:35:59 INFO  : Logs_Intermediates/LrAnnotation/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529031224.log: Copied (new)
2026/05/29 18:35:59 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/44/206b4b250b2b772022116e6ca66819/.command.out: Copied (new)
2026/05/29 18:35:59 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780022223189_276038.log: Copied (new)
2026/05/29 18:35:59 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/44/206b4b250b2b772022116e6ca66819/.command.log: Copied (new)
2026/05/29 18:35:59 INFO  : Logs_Intermediates/FastqGeneration/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna_S11_L002_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:35:59 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/44/206b4b250b2b772022116e6ca66819/.command.run: Copied (new)
2026/05/29 18:35:59 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/44/206b4b250b2b772022116e6ca66819/.command.sh: Copied (new)
2026/05/29 18:36:00 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/44/206b4b250b2b772022116e6ca66819/.exitcode: Copied (new)
2026/05/29 18:36:00 INFO  : Logs_Intermediates/MetricsOutput/1267_0-T1-TDNA-1_HLNMCDRX7_1/1267_0-T1-TDNA-1_HLNMCDRX7_1_MetricsOutput.tsv: Copied (new)
2026/05/29 18:36:00 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/00/3bcdb1401050dbe17bfc8b013c4814/.command.begin: Copied (new)
2026/05/29 18:36:00 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/00/3bcdb1401050dbe17bfc8b013c4814/.command.err: Copied (new)
2026/05/29 18:36:00 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/00/3bcdb1401050dbe17bfc8b013c4814/.command.log: Copied (new)
2026/05/29 18:36:00 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/44/206b4b250b2b772022116e6ca66819/.command.trace: Copied (new)
2026/05/29 18:36:00 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/00/3bcdb1401050dbe17bfc8b013c4814/.command.sh: Copied (new)
2026/05/29 18:36:00 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/00/3bcdb1401050dbe17bfc8b013c4814/.command.run: Copied (new)
2026/05/29 18:36:00 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/00/3bcdb1401050dbe17bfc8b013c4814/.command.trace: Copied (new)
2026/05/29 18:36:00 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/00/3bcdb1401050dbe17bfc8b013c4814/.exitcode: Copied (new)
2026/05/29 18:36:00 INFO  : Logs_Intermediates/nextflow_work_logs/0a/b64a10cd54e6c2367fb008968bb8ec/.command.err: Copied (new)
2026/05/29 18:36:00 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529023718.log: Copied (new)
2026/05/29 18:36:00 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/00/3bcdb1401050dbe17bfc8b013c4814/.command.out: Copied (new)
2026/05/29 18:36:00 INFO  : Logs_Intermediates/nextflow_work_logs/0a/b64a10cd54e6c2367fb008968bb8ec/.command.log: Copied (new)
2026/05/29 18:36:00 INFO  : Logs_Intermediates/nextflow_work_logs/0a/b64a10cd54e6c2367fb008968bb8ec/.command.out: Copied (new)
2026/05/29 18:36:00 INFO  : Logs_Intermediates/CombinedVariantOutput/1267_2-T1-TDNA-1_HLNMCDRX7_1/1267_2-T1-TDNA-1_HLNMCDRX7_1_CombinedVariantOutput.tsv: Copied (new)
2026/05/29 18:36:00 INFO  : Logs_Intermediates/nextflow_work_logs/0a/b64a10cd54e6c2367fb008968bb8ec/.command.run: Copied (new)
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2026/05/29 18:36:01 INFO  : Logs_Intermediates/FastqGeneration/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna_S9_L002_R1_001.fastq.gz: Multi-thread Copied (new)
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2026/05/29 18:36:01 INFO  : Logs_Intermediates/FastqGeneration/1029_JAD-T1-TDNA-1_HLNMCDRX7_1_dna/1029_JAD-T1-TDNA-1_HLNMCDRX7_1_dna_S13_L002_R1_001.fastq.gz: Multi-thread Copied (new)
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2026/05/29 18:36:03 INFO  : Logs_Intermediates/FastqGeneration/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna_S10_L001_R1_001.fastq.gz: Multi-thread Copied (new)
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2026/05/29 18:36:03 INFO  : Logs_Intermediates/DnaDragenCaller/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780017659884_106814.log: Copied (new)
2026/05/29 18:36:03 INFO  : ica_logs/work/28/ec8f3c5200742ab52ef67ef2e63b4d/work/80/24855e95032276c65cc9456f3683c9/.command.run: Copied (new)
2026/05/29 18:36:03 INFO  : ica_logs/work/28/ec8f3c5200742ab52ef67ef2e63b4d/work/80/24855e95032276c65cc9456f3683c9/.command.sh: Copied (new)
2026/05/29 18:36:03 INFO  : ica_logs/work/28/ec8f3c5200742ab52ef67ef2e63b4d/work/80/24855e95032276c65cc9456f3683c9/.exitcode: Copied (new)
2026/05/29 18:36:03 INFO  : ica_logs/work/28/ec8f3c5200742ab52ef67ef2e63b4d/work/80/24855e95032276c65cc9456f3683c9/.command.trace: Copied (new)
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2026/05/29 18:36:03 INFO  : Logs_Intermediates/Contamination/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna_contamination.json: Copied (new)
2026/05/29 18:36:03 INFO  : ica_logs/out/Logs_Intermediates/Contamination/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529030614.log: Copied (new)
2026/05/29 18:36:03 INFO  : Logs_Intermediates/Contamination/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529032453.log: Copied (new)
2026/05/29 18:36:03 INFO  : ica_logs/work/fd/4f6de3779c45dce43590ea29f91ea1/logs/Lane_2/Warnings.log: Copied (new)
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2026/05/29 18:36:03 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:36:03 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:36:03 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:36:03 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:36:03 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:36:03 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:36:03 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:36:03 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:36:04 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:36:04 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:36:04 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:36:04 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:36:04 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/05/29 18:36:04 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/05/29 18:36:04 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780022125738_252192.log: Copied (new)
2026/05/29 18:36:04 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:36:04 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:36:04 INFO  : Logs_Intermediates/nextflow_work_logs/10/3538dbd7a329f1f6303aebdd5436df/.command.err: Copied (new)
2026/05/29 18:36:04 INFO  : Logs_Intermediates/LrCalculator/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
2026/05/29 18:36:04 INFO  : Logs_Intermediates/LrCalculator/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529031221.log: Copied (new)
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2026/05/29 18:36:04 INFO  : ica_logs/out/Logs_Intermediates/ResourceVerification/ResourceVerification-20260529001603.log: Copied (new)
2026/05/29 18:36:04 INFO  : Logs_Intermediates/nextflow_work_logs/10/3538dbd7a329f1f6303aebdd5436df/.command.out: Copied (new)
2026/05/29 18:36:04 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780022125729_252192.log: Copied (new)
2026/05/29 18:36:04 INFO  : Logs_Intermediates/nextflow_work_logs/10/3538dbd7a329f1f6303aebdd5436df/.command.run: Copied (new)
2026/05/29 18:36:04 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/01/0ec84ff8a3c71f48ae51e6bcae31a4/.command.err: Copied (new)
2026/05/29 18:36:04 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/01/0ec84ff8a3c71f48ae51e6bcae31a4/.command.begin: Copied (new)
2026/05/29 18:36:04 INFO  : ica_logs/out/Logs_Intermediates/Gis/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780020008413_202934.log: Copied (new)
2026/05/29 18:36:04 INFO  : ica_logs/out/Logs_Intermediates/Gis/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780020008420_202934.log: Copied (new)
2026/05/29 18:36:04 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/01/0ec84ff8a3c71f48ae51e6bcae31a4/.command.log: Copied (new)
2026/05/29 18:36:04 INFO  : Logs_Intermediates/nextflow_work_logs/10/3538dbd7a329f1f6303aebdd5436df/.command.sh: Copied (new)
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2026/05/29 18:36:04 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/01/0ec84ff8a3c71f48ae51e6bcae31a4/.exitcode: Copied (new)
2026/05/29 18:36:04 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/01/0ec84ff8a3c71f48ae51e6bcae31a4/.command.trace: Copied (new)
2026/05/29 18:36:04 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/01/0ec84ff8a3c71f48ae51e6bcae31a4/.command.sh: Copied (new)
2026/05/29 18:36:04 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/01/0ec84ff8a3c71f48ae51e6bcae31a4/.command.run: Copied (new)
2026/05/29 18:36:04 INFO  : Logs_Intermediates/nextflow_work_logs/0f/404f1961217b696ece3b80b669aed6/.command.err: Copied (new)
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2026/05/29 18:36:04 INFO  : Logs_Intermediates/nextflow_work_logs/0f/404f1961217b696ece3b80b669aed6/.command.log: Copied (new)
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2026/05/29 18:36:04 INFO  : Logs_Intermediates/Gis/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.abcn_genes.tsv: Copied (new)
2026/05/29 18:36:04 INFO  : Logs_Intermediates/Gis/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.abcn_annotated.vcf: Copied (new)
2026/05/29 18:36:04 INFO  : Logs_Intermediates/Gis/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:36:04 INFO  : Logs_Intermediates/Gis/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.baf.bedgraph.gz.gzi: Copied (new)
2026/05/29 18:36:04 INFO  : Logs_Intermediates/Gis/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.baf.bedgraph.gz: Copied (new)
2026/05/29 18:36:05 INFO  : Logs_Intermediates/Gis/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
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2026/05/29 18:36:05 INFO  : Logs_Intermediates/FastqGeneration/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna_S9_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:36:05 INFO  : Logs_Intermediates/Gis/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780020910842_227822.log: Copied (new)
2026/05/29 18:36:05 INFO  : Logs_Intermediates/Gis/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780020910835_227822.log: Copied (new)
2026/05/29 18:36:05 INFO  : Logs_Intermediates/Gis/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna_logRatio.original.tsv: Copied (new)
2026/05/29 18:36:05 INFO  : Logs_Intermediates/Gis/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna_bAllele.tsv: Copied (new)
2026/05/29 18:36:05 INFO  : Logs_Intermediates/Annotation/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529030900.log: Copied (new)
2026/05/29 18:36:05 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/08/88b64281c34bb63e6ce2ea3e6f1852/.command.begin: Copied (new)
2026/05/29 18:36:05 INFO  : Logs_Intermediates/Annotation/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:36:05 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/08/88b64281c34bb63e6ce2ea3e6f1852/.command.err: Copied (new)
2026/05/29 18:36:05 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/08/88b64281c34bb63e6ce2ea3e6f1852/.command.log: Copied (new)
2026/05/29 18:36:05 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/08/88b64281c34bb63e6ce2ea3e6f1852/.command.sh: Copied (new)
2026/05/29 18:36:05 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/08/88b64281c34bb63e6ce2ea3e6f1852/.command.out: Copied (new)
2026/05/29 18:36:05 INFO  : Logs_Intermediates/Gis/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna_logRatio.tsv: Copied (new)
2026/05/29 18:36:05 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/08/88b64281c34bb63e6ce2ea3e6f1852/.command.run: Copied (new)
2026/05/29 18:36:05 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/08/88b64281c34bb63e6ce2ea3e6f1852/.command.trace: Copied (new)
2026/05/29 18:36:05 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/08/88b64281c34bb63e6ce2ea3e6f1852/.exitcode: Copied (new)
2026/05/29 18:36:05 INFO  : Logs_Intermediates/Annotation/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_Annotated.json.gz: Copied (new)
2026/05/29 18:36:05 INFO  : Logs_Intermediates/Gis/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna_raw.tsv: Copied (new)
2026/05/29 18:36:05 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.bam.md5sum: Copied (new)
2026/05/29 18:36:05 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:36:05 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:36:05 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:36:05 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/05/29 18:36:05 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.gff3: Copied (new)
2026/05/29 18:36:05 INFO  : Logs_Intermediates/FastqGeneration/1029_JAD-T1-TDNA-1_HLNMCDRX7_1_dna/1029_JAD-T1-TDNA-1_HLNMCDRX7_1_dna_S13_L002_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:36:05 INFO  : Logs_Intermediates/FastqGeneration/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna_S11_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:36:05 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/05/29 18:36:05 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/05/29 18:36:05 INFO  : Results/1029_VYX-T1-TDNA-1_HLNMCDRX7_1/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf: Copied (new)
2026/05/29 18:36:05 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/05/29 18:36:05 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:36:05 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.exon_hist.csv: Copied (new)
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2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.fastq_list.csv: Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/FastqGeneration/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna_S11_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.bam.bai: Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
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2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.insert-stats.tab: Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_log.txt: Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_output.json: Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
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2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.pileup.txt: Copied (new)
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2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
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2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
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2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_callability.bed: Copied (new)
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2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
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2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/05/29 18:36:06 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/05/29 18:36:07 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/05/29 18:36:07 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
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2026/05/29 18:36:07 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:36:07 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/05/29 18:36:07 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions-finder.txt: Copied (new)
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2026/05/29 18:36:07 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
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2026/05/29 18:36:07 INFO  : Logs_Intermediates/nextflow_work_logs/0c/65f70321381586104f60758c61193a/.command.err: Copied (new)
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2026/05/29 18:36:07 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/work/85/c879054f4ad2ed0e5b08d4b8cde567/.command.begin: Copied (new)
2026/05/29 18:36:07 INFO  : Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780016881476_84053.log: Copied (new)
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2026/05/29 18:36:07 INFO  : ica_logs/out/Logs_Intermediates/Annotation/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529024959.log: Copied (new)
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2026/05/29 18:36:07 INFO  : Logs_Intermediates/DnaCoverageReports/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/gen_coverage_reports.log: Copied (new)
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2026/05/29 18:36:07 INFO  : Logs_Intermediates/DnaCoverageReports/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.gene_cov_report.tsv: Copied (new)
2026/05/29 18:36:07 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/07/c080f9e0034c5f44ec2e3feacecba7/.command.begin: Copied (new)
2026/05/29 18:36:07 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/07/c080f9e0034c5f44ec2e3feacecba7/.command.err: Copied (new)
2026/05/29 18:36:07 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/.nextflow/cache/c2772c06-40fd-4408-b9f7-ec7b97892237/db/000003.log: Copied (new)
2026/05/29 18:36:07 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780017558849_107510.log: Copied (new)
2026/05/29 18:36:07 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/07/c080f9e0034c5f44ec2e3feacecba7/.command.log: Copied (new)
2026/05/29 18:36:07 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/07/c080f9e0034c5f44ec2e3feacecba7/.command.out: Copied (new)
2026/05/29 18:36:07 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/07/c080f9e0034c5f44ec2e3feacecba7/.command.run: Copied (new)
2026/05/29 18:36:07 INFO  : Logs_Intermediates/DnaCoverageReports/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.exon_cov_report.tsv: Copied (new)
2026/05/29 18:36:07 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/.nextflow/cache/6813bf33-ee3e-43dd-aae7-d31cd9f26c73/db/000003.log: Copied (new)
2026/05/29 18:36:07 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/07/c080f9e0034c5f44ec2e3feacecba7/.exitcode: Copied (new)
2026/05/29 18:36:08 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/07/c080f9e0034c5f44ec2e3feacecba7/.command.trace: Copied (new)
2026/05/29 18:36:08 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/07/c080f9e0034c5f44ec2e3feacecba7/Nirvana-20260529025442.log: Copied (new)
2026/05/29 18:36:08 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/69/b4bb6348175878e6041975b6536495/.command.begin: Copied (new)
2026/05/29 18:36:08 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/69/b4bb6348175878e6041975b6536495/.command.err: Copied (new)
2026/05/29 18:36:08 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/69/b4bb6348175878e6041975b6536495/.command.log: Copied (new)
2026/05/29 18:36:08 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/69/b4bb6348175878e6041975b6536495/.command.out: Copied (new)
2026/05/29 18:36:08 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/69/b4bb6348175878e6041975b6536495/.command.sh: Copied (new)
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2026/05/29 18:36:08 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/69/b4bb6348175878e6041975b6536495/.exitcode: Copied (new)
2026/05/29 18:36:08 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/69/b4bb6348175878e6041975b6536495/.command.run: Copied (new)
2026/05/29 18:36:08 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/69/b4bb6348175878e6041975b6536495/.command.trace: Copied (new)
2026/05/29 18:36:08 INFO  : Logs_Intermediates/Tmb/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:36:08 INFO  : Logs_Intermediates/Tmb/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:36:08 INFO  : Logs_Intermediates/FastqGeneration/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna_S9_L002_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:36:08 INFO  : Logs_Intermediates/Tmb/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:36:08 INFO  : Logs_Intermediates/Tmb/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:36:08 INFO  : Logs_Intermediates/Tmb/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:36:08 INFO  : Logs_Intermediates/Tmb/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.tmb.metrics.csv: Copied (new)
2026/05/29 18:36:08 INFO  : Logs_Intermediates/Tmb/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:36:08 INFO  : Logs_Intermediates/Tmb/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529011657.log: Copied (new)
2026/05/29 18:36:08 INFO  : Logs_Intermediates/Tmb/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780024203844_319420.log: Copied (new)
2026/05/29 18:36:08 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529023717.log: Copied (new)
2026/05/29 18:36:08 INFO  : Logs_Intermediates/Tmb/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780024203836_319420.log: Copied (new)
2026/05/29 18:36:08 INFO  : ica_logs/out/Logs_Intermediates/DnaCoverageReports/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/05/29 18:36:08 INFO  : Logs_Intermediates/LrAnnotation/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna_DNAExonCNV_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:36:08 INFO  : Logs_Intermediates/LrAnnotation/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna_DNAExonCNV_Annotated.json.gz: Copied (new)
2026/05/29 18:36:08 INFO  : Logs_Intermediates/Tmb/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.tmb.trace.tsv: Copied (new)
2026/05/29 18:36:08 INFO  : Logs_Intermediates/LrAnnotation/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529031223.log: Copied (new)
2026/05/29 18:36:08 INFO  : ica_logs/work/fd/4f6de3779c45dce43590ea29f91ea1/output/Logs/Errors.log: Copied (new)
2026/05/29 18:36:08 INFO  : Logs_Intermediates/FastqGeneration/1029_JAD-T1-TDNA-1_HLNMCDRX7_1_dna/1029_JAD-T1-TDNA-1_HLNMCDRX7_1_dna_S13_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:36:08 INFO  : Logs_Intermediates/CombinedVariantOutput/1267_B1-T1-TDNA-1_HLNMCDRX7_1/1267_B1-T1-TDNA-1_HLNMCDRX7_1_CombinedVariantOutput.tsv: Copied (new)
2026/05/29 18:36:08 INFO  : ica_logs/work/fd/4f6de3779c45dce43590ea29f91ea1/output/Logs/Warnings.log: Copied (new)
2026/05/29 18:36:08 INFO  : ica_logs/work/fd/4f6de3779c45dce43590ea29f91ea1/output/Logs/Info.log: Copied (new)
2026/05/29 18:36:08 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780022804239_294691.log: Copied (new)
2026/05/29 18:36:08 INFO  : Logs_Intermediates/nextflow_work_logs/11/61e65378b7c0469b318877133fa731/.command.err: Copied (new)
2026/05/29 18:36:08 INFO  : Logs_Intermediates/nextflow_work_logs/11/61e65378b7c0469b318877133fa731/.command.log: Copied (new)
2026/05/29 18:36:08 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780022804232_294691.log: Copied (new)
2026/05/29 18:36:08 INFO  : Logs_Intermediates/nextflow_work_logs/11/61e65378b7c0469b318877133fa731/.command.out: Copied (new)
2026/05/29 18:36:08 INFO  : Logs_Intermediates/nextflow_work_logs/11/61e65378b7c0469b318877133fa731/.command.run: Copied (new)
2026/05/29 18:36:08 INFO  : Logs_Intermediates/nextflow_work_logs/11/61e65378b7c0469b318877133fa731/.command.sh: Copied (new)
2026/05/29 18:36:08 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529023719.log: Copied (new)
2026/05/29 18:36:08 INFO  : Logs_Intermediates/MetricsOutput/1267_2-T1-TDNA-1_HLNMCDRX7_1/1267_2-T1-TDNA-1_HLNMCDRX7_1_MetricsOutput.tsv: Copied (new)
2026/05/29 18:36:08 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/.nextflow/cache/c223d4cd-273b-472c-b3bc-bac8fb1427c6/db/000003.log: Copied (new)
2026/05/29 18:36:08 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/05/29e0d9c4b672e05b9f9e4bd6b34427/.command.begin: Copied (new)
2026/05/29 18:36:08 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/05/29e0d9c4b672e05b9f9e4bd6b34427/.command.err: Copied (new)
2026/05/29 18:36:08 INFO  : Logs_Intermediates/FastqGeneration/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna_S14_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:36:08 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/05/29e0d9c4b672e05b9f9e4bd6b34427/.command.log: Copied (new)
2026/05/29 18:36:08 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/05/29e0d9c4b672e05b9f9e4bd6b34427/.command.out: Copied (new)
2026/05/29 18:36:09 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/05/29e0d9c4b672e05b9f9e4bd6b34427/.exitcode: Copied (new)
2026/05/29 18:36:09 INFO  : Logs_Intermediates/Tmb/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz: Copied (new)
2026/05/29 18:36:09 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/0b/d06141faec643d4f7ab2014c912b03/.command.begin: Copied (new)
2026/05/29 18:36:09 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/05/29e0d9c4b672e05b9f9e4bd6b34427/.command.run: Copied (new)
2026/05/29 18:36:09 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/05/29e0d9c4b672e05b9f9e4bd6b34427/.command.sh: Copied (new)
2026/05/29 18:36:09 INFO  : Logs_Intermediates/FastqGeneration/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna_S14_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:36:09 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/0b/d06141faec643d4f7ab2014c912b03/.command.err: Copied (new)
2026/05/29 18:36:09 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/.nextflow/cache/4b5fedfe-a619-438d-9821-334665108e58/db/000003.log: Copied (new)
2026/05/29 18:36:09 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/05/29e0d9c4b672e05b9f9e4bd6b34427/.command.trace: Copied (new)
2026/05/29 18:36:09 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/0b/d06141faec643d4f7ab2014c912b03/.command.log: Copied (new)
2026/05/29 18:36:09 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/0b/d06141faec643d4f7ab2014c912b03/.command.out: Copied (new)
2026/05/29 18:36:09 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/0b/d06141faec643d4f7ab2014c912b03/.command.run: Copied (new)
2026/05/29 18:36:09 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/0b/d06141faec643d4f7ab2014c912b03/.command.sh: Copied (new)
2026/05/29 18:36:09 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/02/3921450f1ddd4ca1fe7036bae782a0/.command.begin: Copied (new)
2026/05/29 18:36:09 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/0b/d06141faec643d4f7ab2014c912b03/.exitcode: Copied (new)
2026/05/29 18:36:09 INFO  : ica_logs/out/Logs_Intermediates/Contamination/1029_JAD-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529030612.log: Copied (new)
2026/05/29 18:36:09 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/0b/d06141faec643d4f7ab2014c912b03/.command.trace: Copied (new)
2026/05/29 18:36:09 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/02/3921450f1ddd4ca1fe7036bae782a0/.command.err: Copied (new)
2026/05/29 18:36:09 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/02/3921450f1ddd4ca1fe7036bae782a0/.command.run: Copied (new)
2026/05/29 18:36:09 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/02/3921450f1ddd4ca1fe7036bae782a0/.command.out: Copied (new)
2026/05/29 18:36:09 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/02/3921450f1ddd4ca1fe7036bae782a0/.exitcode: Copied (new)
2026/05/29 18:36:09 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/02/3921450f1ddd4ca1fe7036bae782a0/.command.trace: Copied (new)
2026/05/29 18:36:09 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/02/3921450f1ddd4ca1fe7036bae782a0/.command.sh: Copied (new)
2026/05/29 18:36:09 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/02/3921450f1ddd4ca1fe7036bae782a0/.command.log: Copied (new)
2026/05/29 18:36:09 INFO  : ica_logs/out/Logs_Intermediates/Gis/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780020348785_214769.log: Copied (new)
2026/05/29 18:36:09 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:36:09 INFO  : Logs_Intermediates/Contamination/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529032453.log: Copied (new)
2026/05/29 18:36:09 INFO  : Logs_Intermediates/Contamination/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna_contamination.json: Copied (new)
2026/05/29 18:36:09 INFO  : ica_logs/out/Logs_Intermediates/Gis/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780020348778_214769.log: Copied (new)
2026/05/29 18:36:09 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/.nextflow/cache/bf653a14-b0f6-4a54-a234-99ba171ed424/db/000003.log: Copied (new)
2026/05/29 18:36:09 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:36:09 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:36:09 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:36:09 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:36:09 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:36:09 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:36:09 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:36:09 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:36:09 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
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2026/05/29 18:36:09 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780021496760_230615.log: Copied (new)
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2026/05/29 18:36:09 INFO  : Logs_Intermediates/nextflow_work_logs/10/58daf63d60b833882cc9962e2767f9/.command.env: Copied (new)
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2026/05/29 18:36:09 INFO  : Logs_Intermediates/LrCalculator/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529025717.log: Copied (new)
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2026/05/29 18:36:09 INFO  : Logs_Intermediates/FastqGeneration/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna_S11_L002_R1_001.fastq.gz: Multi-thread Copied (new)
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2026/05/29 18:36:10 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/09/b88a0bc25a84f0c2fce884ff5f3dd2/.exitcode: Copied (new)
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2026/05/29 18:36:10 INFO  : Logs_Intermediates/Annotation/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:36:10 INFO  : Logs_Intermediates/Annotation/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529025411.log: Copied (new)
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2026/05/29 18:36:10 INFO  : Logs_Intermediates/Gis/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780022467469_280448.log: Copied (new)
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2026/05/29 18:36:10 INFO  : Logs_Intermediates/Gis/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780022467461_280448.log: Copied (new)
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2026/05/29 18:36:10 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/7b/612162ed41c6ba0e6eded0a1ad2dcb/.command.out: Copied (new)
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2026/05/29 18:36:10 INFO  : Logs_Intermediates/Gis/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna_logRatio.original.tsv: Copied (new)
2026/05/29 18:36:10 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/7b/612162ed41c6ba0e6eded0a1ad2dcb/.exitcode: Copied (new)
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2026/05/29 18:36:10 INFO  : ica_logs/out/Logs_Intermediates/Annotation/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529025139.log: Copied (new)
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2026/05/29 18:36:10 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/7b/612162ed41c6ba0e6eded0a1ad2dcb/.command.trace: Copied (new)
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2026/05/29 18:36:11 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/0f/da230f7fed36e257104be8ac0dcb1c/.exitcode: Copied (new)
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2026/05/29 18:36:11 INFO  : Logs_Intermediates/DnaCoverageReports/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/gen_coverage_reports.log: Copied (new)
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2026/05/29 18:36:11 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.combined.counts.txt.gz: Copied (new)
2026/05/29 18:36:11 INFO  : Logs_Intermediates/Tmb/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529005722.log: Copied (new)
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2026/05/29 18:36:11 INFO  : Logs_Intermediates/Tmb/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780024170094_317841.log: Copied (new)
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2026/05/29 18:36:11 INFO  : ica_logs/bpe1-433e7c51-e385-4edd-a85e-4fe1e7305621-1pre/8/stderr.mvtpp.log: Copied (new)
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2026/05/29 18:36:11 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/08/51dc5c3aa323e665159b234271b162/.command.begin: Copied (new)
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2026/05/29 18:36:11 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/08/51dc5c3aa323e665159b234271b162/.command.log: Copied (new)
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2026/05/29 18:36:11 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/08/51dc5c3aa323e665159b234271b162/Nirvana-20260529012004.log: Copied (new)
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2026/05/29 18:36:11 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/07/dd97c3f02ed7db32cb6f251ab0a257/.exitcode: Copied (new)
2026/05/29 18:36:11 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/07/dd97c3f02ed7db32cb6f251ab0a257/.command.trace: Copied (new)
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2026/05/29 18:36:11 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/07/dd97c3f02ed7db32cb6f251ab0a257/.command.run: Copied (new)
2026/05/29 18:36:11 INFO  : ica_logs/out/Logs_Intermediates/DnaCoverageReports/1029_JAD-T1-TDNA-1_HLNMCDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/05/29 18:36:11 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
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2026/05/29 18:36:12 INFO  : Logs_Intermediates/FastqGeneration/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna_S28_L001_R1_001.fastq.gz: Copied (new)
2026/05/29 18:36:12 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:36:12 INFO  : Logs_Intermediates/FastqGeneration/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna_S28_L002_R1_001.fastq.gz: Copied (new)
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2026/05/29 18:36:12 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780016498042_77711.log: Copied (new)
2026/05/29 18:36:12 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/05/a919702dc0f5ca2616292eb98003df/.command.begin: Copied (new)
2026/05/29 18:36:12 INFO  : Logs_Intermediates/FastqGeneration/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna_S28_L001_R2_001.fastq.gz: Copied (new)
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2026/05/29 18:36:12 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/05/a919702dc0f5ca2616292eb98003df/.command.sh: Copied (new)
2026/05/29 18:36:12 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/05/a919702dc0f5ca2616292eb98003df/.exitcode: Copied (new)
2026/05/29 18:36:12 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780016498057_77711.log: Copied (new)
2026/05/29 18:36:12 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/05/a919702dc0f5ca2616292eb98003df/.command.log: Copied (new)
2026/05/29 18:36:12 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/05/a919702dc0f5ca2616292eb98003df/.command.out: Copied (new)
2026/05/29 18:36:12 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/05/a919702dc0f5ca2616292eb98003df/.command.trace: Copied (new)
2026/05/29 18:36:12 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/00/7f94af305bb2fba3246ab7a6779f85/LrCalculator/LrCalculator-20260529023722.log: Copied (new)
2026/05/29 18:36:12 INFO  : Logs_Intermediates/FastqGeneration/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna_S14_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:36:12 INFO  : Logs_Intermediates/nextflow_work_logs/12/6e3dadc7c33cf324d403a46ef72b47/.command.run: Copied (new)
2026/05/29 18:36:12 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529023718.log: Copied (new)
2026/05/29 18:36:12 INFO  : Logs_Intermediates/nextflow_work_logs/12/6e3dadc7c33cf324d403a46ef72b47/.command.sh: Copied (new)
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2026/05/29 18:36:12 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780022063284_269224.log: Copied (new)
2026/05/29 18:36:12 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780022063276_269224.log: Copied (new)
2026/05/29 18:36:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.bam.md5sum: Copied (new)
2026/05/29 18:36:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:36:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:36:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/05/29 18:36:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:36:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/05/29 18:36:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.gff3: Copied (new)
2026/05/29 18:36:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/05/29 18:36:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:36:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/05/29 18:36:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/05/29 18:36:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/05/29 18:36:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.exon_hist.csv: Copied (new)
2026/05/29 18:36:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/05/29 18:36:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.fastq_list.csv: Copied (new)
2026/05/29 18:36:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/05/29 18:36:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/05/29 18:36:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/05/29 18:36:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/05/29 18:36:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/05/29 18:36:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:36:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/05/29 18:36:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/05/29 18:36:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.insert-stats.tab: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_log.txt: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_output.json: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/FastqGeneration/1029_JAD-T1-TDNA-1_HLNMCDRX7_1_dna/1029_JAD-T1-TDNA-1_HLNMCDRX7_1_dna_S13_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.pileup.txt: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.bam.bai: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/FastqGeneration/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna_S15_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.combined.counts.txt.gz: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/05/29 18:36:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:36:14 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/05/29 18:36:14 INFO  : Logs_Intermediates/LrAnnotation/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna_DNAExonCNV_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:36:14 INFO  : Logs_Intermediates/LrAnnotation/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna_DNAExonCNV_Annotated.json.gz: Copied (new)
2026/05/29 18:36:14 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529023720.log: Copied (new)
2026/05/29 18:36:14 INFO  : Logs_Intermediates/MetricsOutput/1267_B1-T1-TDNA-1_HLNMCDRX7_1/1267_B1-T1-TDNA-1_HLNMCDRX7_1_MetricsOutput.tsv: Copied (new)
2026/05/29 18:36:14 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780015440793_46395.log: Copied (new)
2026/05/29 18:36:14 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780015440777_46395.log: Copied (new)
2026/05/29 18:36:14 INFO  : Logs_Intermediates/LrAnnotation/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529031222.log: Copied (new)
2026/05/29 18:36:14 INFO  : Logs_Intermediates/CombinedVariantOutput/1267_CH-T1-TDNA-1_HLNMCDRX7_1/1267_CH-T1-TDNA-1_HLNMCDRX7_1_CombinedVariantOutput.tsv: Copied (new)
2026/05/29 18:36:14 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions.txt: Copied (new)
2026/05/29 18:36:14 INFO  : ica_logs/out/Logs_Intermediates/Contamination/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529030613.log: Copied (new)
2026/05/29 18:36:14 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/07/2616c2dde48118a5f9ec0c50783e06/Contamination/Spoiler-20260529030612.log: Copied (new)
2026/05/29 18:36:14 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/01/b09ee4f74ea6720a135a95f8582289/DnaDragenExonCnvCaller/dragen_run_1780022792096_272923.log: Copied (new)
2026/05/29 18:36:14 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/0a/9aa96700ba5012b7096adae5b91f15/.command.out: Copied (new)
2026/05/29 18:36:14 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/0a/9aa96700ba5012b7096adae5b91f15/.command.begin: Copied (new)
2026/05/29 18:36:14 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/0a/9aa96700ba5012b7096adae5b91f15/.command.err: Copied (new)
2026/05/29 18:36:14 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
2026/05/29 18:36:14 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/0a/9aa96700ba5012b7096adae5b91f15/.command.log: Copied (new)
2026/05/29 18:36:14 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/05/29 18:36:14 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:36:14 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/0a/9aa96700ba5012b7096adae5b91f15/.command.run: Copied (new)
2026/05/29 18:36:14 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/0a/9aa96700ba5012b7096adae5b91f15/.exitcode: Copied (new)
2026/05/29 18:36:14 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/0a/9aa96700ba5012b7096adae5b91f15/.command.sh: Copied (new)
2026/05/29 18:36:14 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/0a/9aa96700ba5012b7096adae5b91f15/.command.trace: Copied (new)
2026/05/29 18:36:14 INFO  : Logs_Intermediates/FastqGeneration/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna_S16_L002_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:36:14 INFO  : ica_logs/out/Logs_Intermediates/FastqGeneration/Logs/Lane_2/Errors.log: Copied (new)
2026/05/29 18:36:14 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/01/b09ee4f74ea6720a135a95f8582289/DnaDragenExonCnvCaller/dragen_syslog_1780022792088_272923.log: Copied (new)
2026/05/29 18:36:14 INFO  : ica_logs/out/Logs_Intermediates/FastqGeneration/Logs/Lane_2/Warnings.log: Copied (new)
2026/05/29 18:36:14 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/work/52/aa95fb70a281f8031753f9ca90fdc8/SampleSheetReader/ReaderService-20260529002855.log: Copied (new)
2026/05/29 18:36:14 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:36:14 INFO  : ica_logs/out/Logs_Intermediates/FastqGeneration/Logs/Lane_2/Info.log: Copied (new)
2026/05/29 18:36:14 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:36:14 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:36:14 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:36:14 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:36:14 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:36:14 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:36:14 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/.nextflow/cache/c51030a9-8a70-4a8c-ac97-5414f36e3a0f/db/000003.log: Copied (new)
2026/05/29 18:36:14 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:36:14 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:36:14 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:36:14 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:36:14 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/05/29 18:36:14 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:36:14 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780021135091_234443.log: Copied (new)
2026/05/29 18:36:14 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
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2026/05/29 18:36:14 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
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2026/05/29 18:36:14 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/work/b0/478b50cc896e8d5847f1522b5db5b1/.command.out: Copied (new)
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2026/05/29 18:36:14 INFO  : Logs_Intermediates/LrCalculator/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
2026/05/29 18:36:14 INFO  : ica_logs/out/Logs_Intermediates/Gis/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780022392344_282745.log: Copied (new)
2026/05/29 18:36:15 INFO  : Logs_Intermediates/LrCalculator/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529025721.log: Copied (new)
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2026/05/29 18:36:15 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/06/e98e7224834a34d2c1a1cd1d124ec9/.command.log: Copied (new)
2026/05/29 18:36:15 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/06/e98e7224834a34d2c1a1cd1d124ec9/.command.out: Copied (new)
2026/05/29 18:36:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.combined.counts.txt.gz: Copied (new)
2026/05/29 18:36:16 INFO  : Logs_Intermediates/FastqGeneration/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna_S16_L002_R1_001.fastq.gz: Multi-thread Copied (new)
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2026/05/29 18:36:18 INFO  : ica_logs/out/Logs_Intermediates/SampleAnalysisResults/1267_B1-T1-TDNA-1_HLNMCDRX7_1_SARJeantLog-20260529033153.log: Copied (new)
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2026/05/29 18:36:20 INFO  : Logs_Intermediates/FastqGeneration/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna_S14_L002_R2_001.fastq.gz: Multi-thread Copied (new)
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2026/05/29 18:36:22 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/0a/ee306d5b5ee5f43c303ab1250171f3/.command.err: Copied (new)
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2026/05/29 18:36:22 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/0a/ee306d5b5ee5f43c303ab1250171f3/.command.sh: Copied (new)
2026/05/29 18:36:22 INFO  : ica_logs/out/Logs_Intermediates/SampleAnalysisResults/1267_0-T1-TDNA-1_HLNMCDRX7_1_SARJeantLog-20260529032852.log: Copied (new)
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2026/05/29 18:36:22 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/0a/ee306d5b5ee5f43c303ab1250171f3/.exitcode: Copied (new)
2026/05/29 18:36:22 INFO  : Logs_Intermediates/Gis/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
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2026/05/29 18:36:23 INFO  : Logs_Intermediates/Gis/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780020712672_206810.log: Copied (new)
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2026/05/29 18:36:23 INFO  : ica_logs/out/Logs_Intermediates/SampleAnalysisResults/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_SARJeantLog-20260529032858.log: Copied (new)
2026/05/29 18:36:23 INFO  : Logs_Intermediates/Annotation/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529025442.log: Copied (new)
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2026/05/29 18:36:23 INFO  : Logs_Intermediates/Contamination/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna_contamination.json: Copied (new)
2026/05/29 18:36:23 INFO  : Logs_Intermediates/Contamination/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529031017.log: Copied (new)
2026/05/29 18:36:23 INFO  : Logs_Intermediates/DnaDragenCaller/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna.bam: Copied (new)
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2026/05/29 18:36:23 INFO  : Logs_Intermediates/DnaDragenCaller/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
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2026/05/29 18:36:23 INFO  : Logs_Intermediates/DnaDragenCaller/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz: Copied (new)
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2026/05/29 18:36:23 INFO  : Logs_Intermediates/Annotation/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_Annotated.json.gz: Copied (new)
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2026/05/29 18:36:23 INFO  : Logs_Intermediates/DnaDragenCaller/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/05/29 18:36:23 INFO  : Logs_Intermediates/DnaDragenCaller/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/05/29 18:36:23 INFO  : Logs_Intermediates/DnaDragenCaller/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/05/29 18:36:23 INFO  : Logs_Intermediates/DnaDragenCaller/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/05/29 18:36:23 INFO  : Logs_Intermediates/DnaDragenCaller/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
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2026/05/29 18:36:24 INFO  : Logs_Intermediates/DnaDragenCaller/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
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2026/05/29 18:36:24 INFO  : Logs_Intermediates/DnaDragenCaller/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
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2026/05/29 18:36:24 INFO  : Logs_Intermediates/DnaDragenCaller/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/05/29 18:36:24 INFO  : Logs_Intermediates/DnaDragenCaller/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna.insert-stats.tab: Copied (new)
2026/05/29 18:36:24 INFO  : Logs_Intermediates/DnaDragenCaller/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:36:24 INFO  : Logs_Intermediates/DnaDragenCaller/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_output.json: Copied (new)
2026/05/29 18:36:24 INFO  : Logs_Intermediates/DnaDragenCaller/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/05/29 18:36:24 INFO  : Logs_Intermediates/FastqGeneration/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna_S15_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:36:24 INFO  : Logs_Intermediates/DnaDragenCaller/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
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2026/05/29 18:36:24 INFO  : Logs_Intermediates/DnaDragenCaller/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna.pileup.txt: Copied (new)
2026/05/29 18:36:24 INFO  : Logs_Intermediates/DnaDragenCaller/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
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2026/05/29 18:36:24 INFO  : ica_logs/out/Logs_Intermediates/SampleAnalysisResults/1267_ES-T1-TDNA-1_HLNMCDRX7_1_SARJeantLog-20260529033016.log: Copied (new)
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2026/05/29 18:36:24 INFO  : Logs_Intermediates/DnaDragenCaller/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
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2026/05/29 18:36:24 INFO  : ica_logs/out/Logs_Intermediates/SampleAnalysisResults/1267_E3-T1-TDNA-1_HLNMCDRX7_1_SARJeantLog-20260529032739.log: Copied (new)
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2026/05/29 18:36:24 INFO  : Logs_Intermediates/DnaDragenCaller/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
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2026/05/29 18:36:25 INFO  : ica_logs/out/Logs_Intermediates/SampleAnalysisResults/1267_EN-T1-TDNA-1_HLNMCDRX7_1_SARJeantLog-20260529033118.log: Copied (new)
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2026/05/29 18:36:25 INFO  : Logs_Intermediates/nextflow_work_logs/0c/e89aa708758a3c61c8275ac36eb440/.command.err: Copied (new)
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2026/05/29 18:36:25 INFO  : Logs_Intermediates/DnaDragenCaller/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780017463533_100360.log: Copied (new)
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2026/05/29 18:36:25 INFO  : Logs_Intermediates/Tmb/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529010131.log: Copied (new)
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2026/05/29 18:36:26 INFO  : Logs_Intermediates/FastqGeneration/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna_S17_L002_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:36:26 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780021153183_239019.log: Copied (new)
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2026/05/29 18:36:26 INFO  : Logs_Intermediates/CombinedVariantOutput/1267_DZ-T1-TDNA-1_HLNMCDRX7_1/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_CombinedVariantOutput.tsv: Copied (new)
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2026/05/29 18:36:26 INFO  : Logs_Intermediates/LrAnnotation/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529025718.log: Copied (new)
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2026/05/29 18:36:26 INFO  : ica_logs/out/Logs_Intermediates/SampleAnalysisResults/1267_CH-T1-TDNA-1_HLNMCDRX7_1_SARJeantLog-20260529033006.log: Copied (new)
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2026/05/29 18:36:26 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/0a/9d531ddf278b2ec956acb77cad3396/.command.trace: Copied (new)
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2026/05/29 18:36:26 INFO  : Logs_Intermediates/Contamination/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna_contamination.json: Copied (new)
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2026/05/29 18:36:26 INFO  : Logs_Intermediates/Contamination/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529031020.log: Copied (new)
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2026/05/29 18:36:26 INFO  : ica_logs/out/Logs_Intermediates/SampleAnalysisResults/659_hv-T1-TDNA-1_HLNMCDRX7_1_SARJeantLog-20260529032818.log: Copied (new)
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2026/05/29 18:36:26 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:36:26 INFO  : Logs_Intermediates/DnaCoverageReports/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.gene_cov_report.tsv: Copied (new)
2026/05/29 18:36:26 INFO  : Logs_Intermediates/LrCalculator/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529031220.log: Copied (new)
2026/05/29 18:36:27 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:36:27 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:36:27 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:36:27 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:36:27 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:36:27 INFO  : Logs_Intermediates/DnaCoverageReports/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.exon_cov_report.tsv: Copied (new)
2026/05/29 18:36:27 INFO  : ica_logs/out/Logs_Intermediates/SampleAnalysisResults/659_eNS-T1-TDNA-1_HLNMCDRX7_1_SARJeantLog-20260529032816.log: Copied (new)
2026/05/29 18:36:27 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:36:27 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/05/29 18:36:27 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:36:27 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/13/843af8bae56f73fa866fffd74daca5/.command.begin: Copied (new)
2026/05/29 18:36:27 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:36:27 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/13/843af8bae56f73fa866fffd74daca5/.command.err: Copied (new)
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2026/05/29 18:36:27 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:36:27 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/13/843af8bae56f73fa866fffd74daca5/.command.out: Copied (new)
2026/05/29 18:36:27 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/13/843af8bae56f73fa866fffd74daca5/.command.log: Copied (new)
2026/05/29 18:36:27 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780022668956_286173.log: Copied (new)
2026/05/29 18:36:27 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:36:27 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780022668949_286173.log: Copied (new)
2026/05/29 18:36:27 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/13/843af8bae56f73fa866fffd74daca5/.command.trace: Copied (new)
2026/05/29 18:36:27 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/13/843af8bae56f73fa866fffd74daca5/.exitcode: Copied (new)
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2026/05/29 18:36:27 INFO  : Logs_Intermediates/FastqGeneration/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna_S31_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:36:27 INFO  : Logs_Intermediates/Annotation/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:36:27 INFO  : Logs_Intermediates/Annotation/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529031220.log: Copied (new)
2026/05/29 18:36:27 INFO  : Logs_Intermediates/Gis/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:36:27 INFO  : Logs_Intermediates/FastqGeneration/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna_S17_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:36:27 INFO  : Logs_Intermediates/Gis/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:36:27 INFO  : Logs_Intermediates/Gis/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.abcn_genes.tsv: Copied (new)
2026/05/29 18:36:27 INFO  : Logs_Intermediates/Gis/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780020737492_222947.log: Copied (new)
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2026/05/29 18:36:27 INFO  : Logs_Intermediates/Gis/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780020737485_222947.log: Copied (new)
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2026/05/29 18:36:27 INFO  : ica_logs/out/Logs_Intermediates/Gis/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780022619501_289360.log: Copied (new)
2026/05/29 18:36:27 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:36:27 INFO  : ica_logs/out/Logs_Intermediates/Gis/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780022619494_289360.log: Copied (new)
2026/05/29 18:36:27 INFO  : Logs_Intermediates/Gis/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna_bAllele.tsv: Copied (new)
2026/05/29 18:36:27 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/02/3921450f1ddd4ca1fe7036bae782a0/DnaDragenExonCnvCaller/dragen_run_1780021161470_242568.log: Copied (new)
2026/05/29 18:36:27 INFO  : Logs_Intermediates/Tmb/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:36:27 INFO  : Logs_Intermediates/Gis/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna_logRatio.tsv: Copied (new)
2026/05/29 18:36:27 INFO  : Logs_Intermediates/Tmb/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:36:27 INFO  : Logs_Intermediates/Tmb/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:36:27 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/09/b88a0bc25a84f0c2fce884ff5f3dd2/DnaDragenExonCnvCaller/dragen_run_1780021472235_250452.log: Copied (new)
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2026/05/29 18:36:27 INFO  : Logs_Intermediates/Tmb/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:36:27 INFO  : Logs_Intermediates/FastqGeneration/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna_S17_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:36:27 INFO  : Logs_Intermediates/Tmb/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.tmb.metrics.csv: Copied (new)
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2026/05/29 18:36:27 INFO  : Logs_Intermediates/Tmb/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780023403639_315262.log: Copied (new)
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2026/05/29 18:36:27 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
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2026/05/29 18:36:27 INFO  : Logs_Intermediates/Tmb/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
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2026/05/29 18:36:27 INFO  : Logs_Intermediates/Tmb/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529013834.log: Copied (new)
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2026/05/29 18:36:27 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0c/4592571d17bbd3da7fd321401d89b8/.command.begin: Copied (new)
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2026/05/29 18:36:27 INFO  : Logs_Intermediates/DnaCoverageReports/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/gen_coverage_reports.log: Copied (new)
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2026/05/29 18:36:27 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0c/4592571d17bbd3da7fd321401d89b8/.command.out: Copied (new)
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2026/05/29 18:36:28 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0c/4592571d17bbd3da7fd321401d89b8/.command.sh: Copied (new)
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2026/05/29 18:36:28 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529025316.log: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/Tmb/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/nextflow_work_logs/13/bacb64b3fa9b6abcf790dfb7c6ddeb/.command.sh: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/nextflow_work_logs/14/cb9368643fbcae18ea0088d17c1c18/.command.err: Copied (new)
2026/05/29 18:36:28 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/0a/4bfa70cfcb25e279ac937b0a40d571/.command.begin: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/nextflow_work_logs/14/cb9368643fbcae18ea0088d17c1c18/.command.run: Copied (new)
2026/05/29 18:36:28 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/0a/4bfa70cfcb25e279ac937b0a40d571/.command.err: Copied (new)
2026/05/29 18:36:28 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/1029_JAD-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780020419601_213922.log: Copied (new)
2026/05/29 18:36:28 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/0a/4bfa70cfcb25e279ac937b0a40d571/.command.out: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/nextflow_work_logs/14/cb9368643fbcae18ea0088d17c1c18/.command.sh: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/nextflow_work_logs/14/cb9368643fbcae18ea0088d17c1c18/.command.log: Copied (new)
2026/05/29 18:36:28 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/0a/4bfa70cfcb25e279ac937b0a40d571/.command.sh: Copied (new)
2026/05/29 18:36:28 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/0a/4bfa70cfcb25e279ac937b0a40d571/.exitcode: Copied (new)
2026/05/29 18:36:28 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/1029_JAD-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780020419593_213922.log: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/nextflow_work_logs/14/cb9368643fbcae18ea0088d17c1c18/.command.out: Copied (new)
2026/05/29 18:36:28 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/0a/4bfa70cfcb25e279ac937b0a40d571/.command.trace: Copied (new)
2026/05/29 18:36:28 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/0a/4bfa70cfcb25e279ac937b0a40d571/.command.run: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/CombinedVariantOutput/1267_E2-T1-TDNA-1_HLNMCDRX7_1/1267_E2-T1-TDNA-1_HLNMCDRX7_1_CombinedVariantOutput.tsv: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.bam.md5sum: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/05/29 18:36:28 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/0a/4bfa70cfcb25e279ac937b0a40d571/.command.log: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.gff3: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.combined.counts.txt.gz: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.exon_hist.csv: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.fastq_list.csv: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.insert-stats.tab: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_output.json: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_log.txt: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:36:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.pileup.txt: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.bam.bai: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/05/29 18:36:29 INFO  : 
Transferred:   	  132.752 GiB / 383.134 GiB, 35%, 1.558 GiB/s, ETA 2m40s
Transferred:         4269 / 14365, 30%
Elapsed time:      1m30.0s
Transferring:
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 75% /3.623Gi, 37.284Mi/s, 23s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 72% /3.657Gi, 28.776Mi/s, 35s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 68% /3.766Gi, 34.348Mi/s, 35s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 48% /4.486Gi, 30.780Mi/s, 1m17s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 65% /3.694Gi, 35.226Mi/s, 36s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 53% /4.157Gi, 29.138Mi/s, 1m8s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 58% /3.803Gi, 34.295Mi/s, 47s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 54% /3.751Gi, 29.807Mi/s, 57s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 41% /4.148Gi, 31.509Mi/s, 1m18s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 39% /4.633Gi, 32.281Mi/s, 1m29s
 * Logs_Intermediates/Fas…7_L001_R1_001.fastq.gz: 98% /1.606Gi, 28.533Mi/s, 1s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 31% /4.466Gi, 28.901Mi/s, 1m48s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 35% /4.678Gi, 34.575Mi/s, 1m28s
 * Logs_Intermediates/Fas…1_L001_R1_001.fastq.gz: 83% /1.591Gi, 29.732Mi/s, 8s
 * Logs_Intermediates/Fas…1_L002_R1_001.fastq.gz: 77% /1.500Gi, 23.214Mi/s, 15s
 * Logs_Intermediates/Fas…1_L002_R2_001.fastq.gz: 88% /1.405Gi, 27.024Mi/s, 5s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 27% /4.499Gi, 32.252Mi/s, 1m44s
 * Logs_Intermediates/Fas…0_L001_R1_001.fastq.gz: 69% /1.628Gi, 29.837Mi/s, 17s
 * Logs_Intermediates/Fas…0_L001_R2_001.fastq.gz: 90% /1.664Gi, 37.118Mi/s, 4s
 * Logs_Intermediates/Fas…0_L002_R1_001.fastq.gz: 81% /1.575Gi, 32.474Mi/s, 9s
 * Logs_Intermediates/Fas…0_L002_R2_001.fastq.gz: 89% /1.610Gi, 36.222Mi/s, 4s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 28% /4.415Gi, 31.890Mi/s, 1m40s
 * Logs_Intermediates/Fas…2_L001_R1_001.fastq.gz: 52% /1.981Gi, 30.906Mi/s, 31s
 * Logs_Intermediates/Fas…2_L001_R2_001.fastq.gz: 53% /2.050Gi, 32.540Mi/s, 30s
 * Logs_Intermediates/Fas…2_L002_R1_001.fastq.gz: 56% /1.938Gi, 34.207Mi/s, 25s
 * Logs_Intermediates/Fas…2_L002_R2_001.fastq.gz: 52% /2.006Gi, 30.710Mi/s, 31s
 * Logs_Intermediates/Fas…7_L001_R1_001.fastq.gz: 52% /1.803Gi, 32.683Mi/s, 27s
 * Logs_Intermediates/Fas…7_L001_R2_001.fastq.gz: 43% /1.851Gi, 27.436Mi/s, 38s
 * Logs_Intermediates/Fas…7_L002_R1_001.fastq.gz: 45% /1.768Gi, 27.922Mi/s, 35s
 * Logs_Intermediates/Fas…7_L002_R2_001.fastq.gz: 53% /1.817Gi, 33.699Mi/s, 25s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 17% /5.954Gi, 37.330Mi/s, 2m15s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 15% /4.890Gi, 33.088Mi/s, 2m7s
 * Logs_Intermediates/Fas…6_L001_R1_001.fastq.gz: 18% /3.727Gi, 33.511Mi/s, 1m32s
 * Logs_Intermediates/Fas…6_L001_R2_001.fastq.gz: 17% /3.787Gi, 31.235Mi/s, 1m42s
 * Logs_Intermediates/Fas…6_L002_R1_001.fastq.gz: 21% /3.640Gi, 38.427Mi/s, 1m16s
 * Logs_Intermediates/Fas…6_L002_R2_001.fastq.gz: 16% /3.699Gi, 29.118Mi/s, 1m49s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam:  6% /8.846Gi, 34.461Mi/s, 4m5s
 * ica_logs/out/Logs_Inte…Log-20260529032941.log: 65% /68.796Mi, 3.143Mi/s, 7s
 * ica_logs/out/Logs_Inte…Log-20260529032739.log: 99% /88.234Mi, 9.333Mi/s, 0s
 * ica_logs/out/Logs_Inte…Log-20260529032739.log: 36% /87.583Mi, 3.875Mi/s, 14s
 * Logs_Intermediates/Fas…8_L001_R1_001.fastq.gz:  4% /1.497Gi, 21.333Mi/s, 1m8s
 * Logs_Intermediates/Fas…8_L001_R2_001.fastq.gz:  2% /1.553Gi, 10.667Mi/s, 2m26s
 * Logs_Intermediates/Fas…8_L002_R1_001.fastq.gz:  4% /1.435Gi, 21.333Mi/s, 1m5s
 * Logs_Intermediates/Fas…8_L002_R2_001.fastq.gz:  8% /1.490Gi, 40.812Mi/s, 34s
 * ica_logs/work/c6/f7cdd…Log-20260529033120.log: 30% /65.863Mi, 11.996Mi/s, 3s
 * Logs_Intermediates/Fas…0_L001_R1_001.fastq.gz:  0% /1.484Gi, 0/s, -
 * Logs_Intermediates/Fas…0_L001_R2_001.fastq.gz:  0% /1.531Gi, 0/s, -
 * Logs_Intermediates/Fas…0_L002_R1_001.fastq.gz:  0% /1.443Gi, 0/s, -
 * Logs_Intermediates/Fas…0_L002_R2_001.fastq.gz:  0% /1.489Gi, 0/s, -
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam:  0% /4.210Gi, 0/s, -
 * Logs_Intermediates/Dna….hard-filtered.gvcf.gz: 27% /18.194Mi, 0/s, -
 * Logs_Intermediates/Dna…ed_read_cov_report.bed: 95% /536.964Ki, 0/s, -
 * Logs_Intermediates/Dna…c_callable_regions.bed:100% /221.602Ki, 0/s, -
 * Logs_Intermediates/Dna…na.tmb_callability.bed:100% /227.271Ki, 0/s, -
 * Logs_Intermediates/Dna…_dna.tmb_fine_hist.csv:100% /16.825Ki, 0/s, -
 * Logs_Intermediates/Dna…mb_read_cov_report.bed:100% /595.873Ki, 0/s, -
 * Logs_Intermediates/Dna…c_callable_regions.bed: transferring
 * Logs_Intermediates/Dna…_HLNMCDRX7_1_dna.tn.bw:100% /275.842Ki, 0/s, -
 * Logs_Intermediates/Dna…MCDRX7_1_dna.tn.tsv.gz: transferring
 * Logs_Intermediates/Dna…na.trimmer_metrics.csv:100% /1.343Ki, 0/s, -
 * Logs_Intermediates/Dna…umi-regions-finder.txt: transferring
 * Logs_Intermediates/Dna…_1_dna.umi-regions.txt: transferring
 * Logs_Intermediates/Dna…_1_dna.umi_metrics.csv: transferring
 * Logs_Intermediates/Dna…7_1_dna.vc_metrics.csv: transferring

2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/05/29 18:36:29 INFO  : ica_logs/out/Logs_Intermediates/SampleAnalysisResults/1267_EO-T1-TDNA-1_HLNMCDRX7_1_SARJeantLog-20260529032739.log: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/MetricsOutput/1267_DZ-T1-TDNA-1_HLNMCDRX7_1/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_MetricsOutput.tsv: Copied (new)
2026/05/29 18:36:29 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/work/e9/c7443f5fee74e2fce7dbfe39893f23/.command.begin: Copied (new)
2026/05/29 18:36:29 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/work/e9/c7443f5fee74e2fce7dbfe39893f23/.command.env: Copied (new)
2026/05/29 18:36:29 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/work/e9/c7443f5fee74e2fce7dbfe39893f23/.command.out: Copied (new)
2026/05/29 18:36:29 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/work/e9/c7443f5fee74e2fce7dbfe39893f23/.command.err: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780015994616_61758.log: Copied (new)
2026/05/29 18:36:29 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/work/e9/c7443f5fee74e2fce7dbfe39893f23/.command.sh: Copied (new)
2026/05/29 18:36:29 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/work/e9/c7443f5fee74e2fce7dbfe39893f23/.command.run: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:36:29 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/work/e9/c7443f5fee74e2fce7dbfe39893f23/.command.log: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780015994600_61758.log: Copied (new)
2026/05/29 18:36:29 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/work/e9/c7443f5fee74e2fce7dbfe39893f23/.command.trace: Copied (new)
2026/05/29 18:36:29 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/work/e9/c7443f5fee74e2fce7dbfe39893f23/.exitcode: Copied (new)
2026/05/29 18:36:29 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/05/a919702dc0f5ca2616292eb98003df/DnaDragenCaller/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:36:29 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/05/a919702dc0f5ca2616292eb98003df/DnaDragenCaller/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:36:29 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/05/a919702dc0f5ca2616292eb98003df/DnaDragenCaller/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:36:29 INFO  : ica_logs/out/Logs_Intermediates/Contamination/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529030615.log: Copied (new)
2026/05/29 18:36:29 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529025317.log: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:36:29 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/05/a919702dc0f5ca2616292eb98003df/DnaDragenCaller/dragen_run_1780015314152_42607.log: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions.txt: Copied (new)
2026/05/29 18:36:29 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/05/a919702dc0f5ca2616292eb98003df/DnaDragenCaller/dragen_syslog_1780015314136_42607.log: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:36:29 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:36:30 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:36:30 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:36:30 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:36:30 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:36:30 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/05/29 18:36:30 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:36:30 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:36:30 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780020941759_213197.log: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/13/bacb64b3fa9b6abcf790dfb7c6ddeb/.command.begin: Copied (new)
2026/05/29 18:36:30 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:36:30 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:36:30 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780020941751_213197.log: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/13/bacb64b3fa9b6abcf790dfb7c6ddeb/.command.err: Copied (new)
2026/05/29 18:36:30 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/13/bacb64b3fa9b6abcf790dfb7c6ddeb/.exitcode: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/13/bacb64b3fa9b6abcf790dfb7c6ddeb/.command.log: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/13/bacb64b3fa9b6abcf790dfb7c6ddeb/.command.out: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/9d/4d8a6091502828fd2eec0a30cc1114/.command.begin: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/13/bacb64b3fa9b6abcf790dfb7c6ddeb/.command.sh: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/9d/4d8a6091502828fd2eec0a30cc1114/.command.env: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/13/bacb64b3fa9b6abcf790dfb7c6ddeb/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/9d/4d8a6091502828fd2eec0a30cc1114/.command.err: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/9d/4d8a6091502828fd2eec0a30cc1114/.command.log: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/13/bacb64b3fa9b6abcf790dfb7c6ddeb/.command.trace: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/13/bacb64b3fa9b6abcf790dfb7c6ddeb/.command.run: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/9d/4d8a6091502828fd2eec0a30cc1114/.command.out: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/9d/4d8a6091502828fd2eec0a30cc1114/.exitcode: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/9d/4d8a6091502828fd2eec0a30cc1114/.command.trace: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/10/58daf63d60b833882cc9962e2767f9/.command.begin: Copied (new)
2026/05/29 18:36:30 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
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2026/05/29 18:36:30 INFO  : ica_logs/out/Logs_Intermediates/Gis/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780021874319_263819.log: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/10/58daf63d60b833882cc9962e2767f9/.command.env: Copied (new)
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2026/05/29 18:36:30 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/18/102da086e8fea6e2fbc4db44200c08/.command.begin: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/18/102da086e8fea6e2fbc4db44200c08/.command.err: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/10/58daf63d60b833882cc9962e2767f9/.exitcode: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/18/102da086e8fea6e2fbc4db44200c08/.command.log: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/10/58daf63d60b833882cc9962e2767f9/.command.trace: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/10/58daf63d60b833882cc9962e2767f9/.command.sh: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/18/102da086e8fea6e2fbc4db44200c08/.command.run: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/10/58daf63d60b833882cc9962e2767f9/.command.run: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/out/Logs_Intermediates/SampleSheetValidation/ValidationService.log-20260528235954.log: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/18/102da086e8fea6e2fbc4db44200c08/.exitcode: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/18/102da086e8fea6e2fbc4db44200c08/.command.sh: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/18/102da086e8fea6e2fbc4db44200c08/.command.trace: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0c/65f70321381586104f60758c61193a/.command.begin: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0c/65f70321381586104f60758c61193a/.command.err: Copied (new)
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2026/05/29 18:36:30 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0c/65f70321381586104f60758c61193a/.exitcode: Copied (new)
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2026/05/29 18:36:30 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/18/102da086e8fea6e2fbc4db44200c08/.command.out: Copied (new)
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2026/05/29 18:36:30 INFO  : Logs_Intermediates/Gis/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:36:30 INFO  : Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
2026/05/29 18:36:30 INFO  : Logs_Intermediates/LrCalculator/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
2026/05/29 18:36:30 INFO  : Logs_Intermediates/Gis/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.baf.bedgraph.gz.gzi: Copied (new)
2026/05/29 18:36:30 INFO  : Logs_Intermediates/Gis/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.abcn_genes.tsv: Copied (new)
2026/05/29 18:36:30 INFO  : Logs_Intermediates/LrCalculator/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529025717.log: Copied (new)
2026/05/29 18:36:30 INFO  : Logs_Intermediates/Gis/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.gis.json: Copied (new)
2026/05/29 18:36:30 INFO  : Logs_Intermediates/Gis/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0c/65f70321381586104f60758c61193a/gen_coverage_reports.log: Copied (new)
2026/05/29 18:36:30 INFO  : Logs_Intermediates/Gis/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.abcn_annotated.vcf: Copied (new)
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2026/05/29 18:36:30 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/17/62fe69434d1a64484078217e8344a6/.command.begin: Copied (new)
2026/05/29 18:36:30 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/17/62fe69434d1a64484078217e8344a6/.command.err: Copied (new)
2026/05/29 18:36:30 INFO  : Logs_Intermediates/Gis/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780021459947_247464.log: Copied (new)
2026/05/29 18:36:31 INFO  : Logs_Intermediates/Gis/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780021459940_247464.log: Copied (new)
2026/05/29 18:36:31 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/17/62fe69434d1a64484078217e8344a6/.command.run: Copied (new)
2026/05/29 18:36:31 INFO  : Logs_Intermediates/Gis/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna_bAllele.tsv: Copied (new)
2026/05/29 18:36:31 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/17/62fe69434d1a64484078217e8344a6/.command.sh: Copied (new)
2026/05/29 18:36:31 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/17/62fe69434d1a64484078217e8344a6/.exitcode: Copied (new)
2026/05/29 18:36:31 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0f/404f1961217b696ece3b80b669aed6/.command.err: Copied (new)
2026/05/29 18:36:31 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0f/404f1961217b696ece3b80b669aed6/.command.begin: Copied (new)
2026/05/29 18:36:31 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0f/404f1961217b696ece3b80b669aed6/.command.log: Copied (new)
2026/05/29 18:36:31 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/17/62fe69434d1a64484078217e8344a6/.command.trace: Copied (new)
2026/05/29 18:36:31 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0f/404f1961217b696ece3b80b669aed6/.command.out: Copied (new)
2026/05/29 18:36:31 INFO  : Logs_Intermediates/Gis/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna_logRatio.tsv: Copied (new)
2026/05/29 18:36:31 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0f/404f1961217b696ece3b80b669aed6/.exitcode: Copied (new)
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2026/05/29 18:36:31 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0f/404f1961217b696ece3b80b669aed6/.command.sh: Copied (new)
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2026/05/29 18:36:31 INFO  : Logs_Intermediates/Annotation/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_Annotated.json.gz.jsi: Copied (new)
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2026/05/29 18:36:31 INFO  : Logs_Intermediates/Annotation/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529025336.log: Copied (new)
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2026/05/29 18:36:31 INFO  : Logs_Intermediates/Tmb/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:36:31 INFO  : Logs_Intermediates/DnaCoverageReports/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/05/29 18:36:31 INFO  : Logs_Intermediates/Tmb/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
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2026/05/29 18:36:31 INFO  : Logs_Intermediates/Tmb/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
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2026/05/29 18:36:31 INFO  : Logs_Intermediates/Tmb/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.tmb.metrics.csv: Copied (new)
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2026/05/29 18:36:31 INFO  : Logs_Intermediates/Gis/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna_logRatio.original.tsv: Copied (new)
2026/05/29 18:36:31 INFO  : Logs_Intermediates/Tmb/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.tmb.trace.tsv: Copied (new)
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2026/05/29 18:36:31 INFO  : Logs_Intermediates/Tmb/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780024138972_316260.log: Copied (new)
2026/05/29 18:36:31 INFO  : Logs_Intermediates/Tmb/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529004305.log: Copied (new)
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2026/05/29 18:36:31 INFO  : Logs_Intermediates/Tmb/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780024138964_316260.log: Copied (new)
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2026/05/29 18:36:31 INFO  : ica_logs/out/Logs_Intermediates/Annotation/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529031146.log: Copied (new)
2026/05/29 18:36:31 INFO  : ica_logs/out/Logs_Intermediates/DnaCoverageReports/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/05/29 18:36:31 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780016999220_91756.log: Copied (new)
2026/05/29 18:36:31 INFO  : Logs_Intermediates/Contamination/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna_contamination.json: Copied (new)
2026/05/29 18:36:31 INFO  : Logs_Intermediates/Contamination/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529032452.log: Copied (new)
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2026/05/29 18:36:31 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529025317.log: Copied (new)
2026/05/29 18:36:31 INFO  : Logs_Intermediates/LrAnnotation/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna_DNAExonCNV_Annotated.json.gz.jsi: Copied (new)
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2026/05/29 18:36:32 INFO  : Logs_Intermediates/LrAnnotation/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529031221.log: Copied (new)
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2026/05/29 18:36:32 INFO  : Logs_Intermediates/Tmb/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz: Copied (new)
2026/05/29 18:36:32 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529025316.log: Copied (new)
2026/05/29 18:36:32 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/work/eb/d4690efa662d4128ec376ebb1d5e5e/.command.out: Copied (new)
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2026/05/29 18:36:32 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/work/eb/d4690efa662d4128ec376ebb1d5e5e/.command.run: Copied (new)
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2026/05/29 18:36:32 INFO  : Logs_Intermediates/Contamination/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529031015.log: Copied (new)
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2026/05/29 18:36:32 INFO  : Logs_Intermediates/Contamination/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna_contamination.json: Copied (new)
2026/05/29 18:36:32 INFO  : ica_logs/out/Logs_Intermediates/Contamination/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529031018.log: Copied (new)
2026/05/29 18:36:32 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/11/61e65378b7c0469b318877133fa731/LrCalculator/LrCalculator-20260529031225.log: Copied (new)
2026/05/29 18:36:32 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.bam.md5sum: Copied (new)
2026/05/29 18:36:32 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:36:32 INFO  : Logs_Intermediates/FastqGeneration/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna_S31_L002_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:36:32 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.gff3: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
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2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.fastq_list.csv: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.bam.bai: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.insert-stats.tab: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:36:33 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/06/e98e7224834a34d2c1a1cd1d124ec9/SampleAnalysisResults/1047_MH-T1-TDNA-1_HLNMCDRX7_1_SARJeantLog-20260529033120.log: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_log.txt: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.pileup.txt: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_output.json: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.combined.counts.txt.gz: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:36:33 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/05/29 18:36:34 INFO  : ica_logs/out/Logs_Intermediates/SampleAnalysisResults/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_SARJeantLog-20260529032941.log: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:36:34 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/17/62fe69434d1a64484078217e8344a6/.command.log: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/MetricsOutput/1267_E2-T1-TDNA-1_HLNMCDRX7_1/1267_E2-T1-TDNA-1_HLNMCDRX7_1_MetricsOutput.tsv: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780018230582_124524.log: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780018230597_124524.log: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:36:34 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:36:35 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:36:35 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:36:35 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:36:35 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/05/29 18:36:35 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:36:35 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/05/29 18:36:35 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780020585745_216679.log: Copied (new)
2026/05/29 18:36:35 INFO  : Logs_Intermediates/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions.txt: Copied (new)
2026/05/29 18:36:35 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/16/289ac6a91fce699c147acdc7f213ee/.command.begin: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/16/289ac6a91fce699c147acdc7f213ee/.command.err: Copied (new)
2026/05/29 18:36:35 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/16/289ac6a91fce699c147acdc7f213ee/.command.run: Copied (new)
2026/05/29 18:36:35 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/16/289ac6a91fce699c147acdc7f213ee/.command.out: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/16/289ac6a91fce699c147acdc7f213ee/.command.sh: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/16/289ac6a91fce699c147acdc7f213ee/.exitcode: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/a0/a9bd7cdabf875db12fd9e169aa2944/.command.begin: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/16/289ac6a91fce699c147acdc7f213ee/.command.log: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/16/289ac6a91fce699c147acdc7f213ee/.command.trace: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/a0/a9bd7cdabf875db12fd9e169aa2944/.command.out: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/06/c176e867ca79e197b61914a06801a4/Tmb/dragen_run_1780022041133_275377.log: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/a0/a9bd7cdabf875db12fd9e169aa2944/.command.env: Copied (new)
2026/05/29 18:36:35 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780020585737_216679.log: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/06/c176e867ca79e197b61914a06801a4/Tmb/dragen_syslog_1780022041126_275377.log: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/a0/a9bd7cdabf875db12fd9e169aa2944/.command.err: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/a0/a9bd7cdabf875db12fd9e169aa2944/.command.trace: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/a0/a9bd7cdabf875db12fd9e169aa2944/.command.sh: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/a0/a9bd7cdabf875db12fd9e169aa2944/.command.log: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/a0/a9bd7cdabf875db12fd9e169aa2944/.command.run: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/a0/a9bd7cdabf875db12fd9e169aa2944/.exitcode: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/out/Logs_Intermediates/Gis/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780021308781_245447.log: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/out/Logs_Intermediates/Gis/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780021308774_245447.log: Copied (new)
2026/05/29 18:36:35 INFO  : Logs_Intermediates/LrCalculator/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529025718.log: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0c/795b178f3836877851f519ada71fd6/.command.begin: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0c/795b178f3836877851f519ada71fd6/.command.err: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0c/795b178f3836877851f519ada71fd6/.command.log: Copied (new)
2026/05/29 18:36:35 INFO  : Logs_Intermediates/LrCalculator/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0c/795b178f3836877851f519ada71fd6/.command.trace: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0c/795b178f3836877851f519ada71fd6/.command.out: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0c/795b178f3836877851f519ada71fd6/.command.run: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0c/795b178f3836877851f519ada71fd6/.command.sh: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0c/795b178f3836877851f519ada71fd6/.exitcode: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0c/795b178f3836877851f519ada71fd6/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:36:35 INFO  : Logs_Intermediates/Gis/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.abcn_genes.tsv: Copied (new)
2026/05/29 18:36:35 INFO  : Logs_Intermediates/Gis/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:36:35 INFO  : Logs_Intermediates/Gis/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.abcn_annotated.vcf: Copied (new)
2026/05/29 18:36:35 INFO  : Logs_Intermediates/Gis/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.baf.bedgraph.gz.gzi: Copied (new)
2026/05/29 18:36:35 INFO  : Logs_Intermediates/Gis/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.gis.json: Copied (new)
2026/05/29 18:36:35 INFO  : Logs_Intermediates/Gis/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.baf.bedgraph.gz: Copied (new)
2026/05/29 18:36:35 INFO  : Logs_Intermediates/Gis/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/20/2703f30101a70f584d368798434798/.command.begin: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/20/2703f30101a70f584d368798434798/.command.err: Copied (new)
2026/05/29 18:36:35 INFO  : Logs_Intermediates/Gis/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna_logRatio.original.tsv: Copied (new)
2026/05/29 18:36:35 INFO  : Logs_Intermediates/Gis/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780023634150_302645.log: Copied (new)
2026/05/29 18:36:35 INFO  : Logs_Intermediates/Gis/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780023634156_302645.log: Copied (new)
2026/05/29 18:36:35 INFO  : Logs_Intermediates/Gis/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna_bAllele.tsv: Copied (new)
2026/05/29 18:36:35 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/20/2703f30101a70f584d368798434798/.command.log: Copied (new)
2026/05/29 18:36:36 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/20/2703f30101a70f584d368798434798/.command.out: Copied (new)
2026/05/29 18:36:36 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/20/2703f30101a70f584d368798434798/.command.run: Copied (new)
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2026/05/29 18:36:36 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/20/2703f30101a70f584d368798434798/.command.sh: Copied (new)
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2026/05/29 18:36:36 INFO  : Logs_Intermediates/Tmb/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:36:36 INFO  : Logs_Intermediates/Gis/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna_logRatio.tsv: Copied (new)
2026/05/29 18:36:36 INFO  : Logs_Intermediates/Gis/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna_raw.tsv: Copied (new)
2026/05/29 18:36:36 INFO  : Logs_Intermediates/Tmb/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
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2026/05/29 18:36:36 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/0f/2cfff0008453e186acab014288ba7d/Tmb/dragen_syslog_1780023062362_305942.log: Copied (new)
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2026/05/29 18:36:36 INFO  : Logs_Intermediates/Tmb/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780023246623_307318.log: Copied (new)
2026/05/29 18:36:36 INFO  : Logs_Intermediates/Tmb/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529005222.log: Copied (new)
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2026/05/29 18:36:36 INFO  : ica_logs/out/Logs_Intermediates/Annotation/1047_MH-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529031041.log: Copied (new)
2026/05/29 18:36:36 INFO  : Logs_Intermediates/Annotation/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:36:36 INFO  : Logs_Intermediates/FastqGeneration/1047_MH-T1-TDNA-1_HLNMCDRX7_1_dna/1047_MH-T1-TDNA-1_HLNMCDRX7_1_dna_S30_L002_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:36:36 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/20/feb886dc19ef76c86185fabfaa1ca9/.command.begin: Copied (new)
2026/05/29 18:36:36 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.combined.counts.txt.gz: Copied (new)
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2026/05/29 18:36:36 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/20/feb886dc19ef76c86185fabfaa1ca9/.command.out: Copied (new)
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2026/05/29 18:36:36 INFO  : Logs_Intermediates/Annotation/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529025612.log: Copied (new)
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2026/05/29 18:36:36 INFO  : Logs_Intermediates/Tmb/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780023246633_307318.log: Copied (new)
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2026/05/29 18:36:36 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/20/feb886dc19ef76c86185fabfaa1ca9/.command.trace: Copied (new)
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2026/05/29 18:36:36 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/17/c7d969b8a5191e660cbe4ab4ff5f79/.exitcode: Copied (new)
2026/05/29 18:36:36 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/17/c7d969b8a5191e660cbe4ab4ff5f79/.command.trace: Copied (new)
2026/05/29 18:36:36 INFO  : Logs_Intermediates/DnaCoverageReports/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.gene_cov_report.tsv: Copied (new)
2026/05/29 18:36:36 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/17/c7d969b8a5191e660cbe4ab4ff5f79/.command.sh: Copied (new)
2026/05/29 18:36:36 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/17/c7d969b8a5191e660cbe4ab4ff5f79/.command.run: Copied (new)
2026/05/29 18:36:36 INFO  : Logs_Intermediates/DnaCoverageReports/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/gen_coverage_reports.log: Copied (new)
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2026/05/29 18:36:36 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
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2026/05/29 18:36:36 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:36:37 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/99/a7aca74b3f40f396f13413d77e2f91/SampleSheetReader/ReaderService-20260529001626.log: Copied (new)
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2026/05/29 18:36:37 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780021472235_250452.log: Copied (new)
2026/05/29 18:36:37 INFO  : Logs_Intermediates/Tmb/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz: Copied (new)
2026/05/29 18:36:37 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780015919704_61363.log: Copied (new)
2026/05/29 18:36:37 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780021472227_250452.log: Copied (new)
2026/05/29 18:36:37 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/12/6e3dadc7c33cf324d403a46ef72b47/.command.begin: Copied (new)
2026/05/29 18:36:37 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/12/6e3dadc7c33cf324d403a46ef72b47/.command.err: Copied (new)
2026/05/29 18:36:37 INFO  : Logs_Intermediates/FastqGeneration/1047_MH-T1-TDNA-1_HLNMCDRX7_1_dna/1047_MH-T1-TDNA-1_HLNMCDRX7_1_dna_S30_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:36:37 INFO  : Logs_Intermediates/CombinedVariantOutput/1267_EN-T1-TDNA-1_HLNMCDRX7_1/1267_EN-T1-TDNA-1_HLNMCDRX7_1_CombinedVariantOutput.tsv: Copied (new)
2026/05/29 18:36:37 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/12/6e3dadc7c33cf324d403a46ef72b47/.command.log: Copied (new)
2026/05/29 18:36:37 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/12/6e3dadc7c33cf324d403a46ef72b47/.command.sh: Copied (new)
2026/05/29 18:36:37 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/12/6e3dadc7c33cf324d403a46ef72b47/.command.out: Copied (new)
2026/05/29 18:36:37 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/12/6e3dadc7c33cf324d403a46ef72b47/.command.run: Copied (new)
2026/05/29 18:36:37 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/12/6e3dadc7c33cf324d403a46ef72b47/.command.trace: Copied (new)
2026/05/29 18:36:37 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/12/6e3dadc7c33cf324d403a46ef72b47/.exitcode: Copied (new)
2026/05/29 18:36:37 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529025314.log: Copied (new)
2026/05/29 18:36:37 INFO  : Logs_Intermediates/Annotation/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_Annotated.json.gz: Copied (new)
2026/05/29 18:36:37 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.bam.md5sum: Copied (new)
2026/05/29 18:36:37 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:36:37 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:36:37 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:36:37 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/05/29 18:36:37 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/05/29 18:36:37 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/05/29 18:36:37 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:36:37 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.gff3: Copied (new)
2026/05/29 18:36:37 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/05/29 18:36:37 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
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2026/05/29 18:36:37 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/05/29 18:36:37 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.exon_hist.csv: Copied (new)
2026/05/29 18:36:37 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/05/29 18:36:38 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.fastq_list.csv: Copied (new)
2026/05/29 18:36:38 INFO  : Logs_Intermediates/FastqGeneration/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna_S17_L001_R1_001.fastq.gz: Multi-thread Copied (new)
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2026/05/29 18:36:38 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
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2026/05/29 18:36:40 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
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2026/05/29 18:36:40 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
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2026/05/29 18:36:40 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:36:40 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:36:40 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:36:40 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:36:40 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:36:40 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/05/29 18:36:40 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:36:40 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:36:40 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:36:40 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/05/29 18:36:40 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780021300334_240954.log: Copied (new)
2026/05/29 18:36:40 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/1d/5c319e1dfe807cd6edc48c83e27779/.command.begin: Copied (new)
2026/05/29 18:36:40 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/1d/5c319e1dfe807cd6edc48c83e27779/.command.err: Copied (new)
2026/05/29 18:36:41 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780021300327_240954.log: Copied (new)
2026/05/29 18:36:41 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/1d/5c319e1dfe807cd6edc48c83e27779/.command.log: Copied (new)
2026/05/29 18:36:41 INFO  : ica_logs/out/Logs_Intermediates/Contamination/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529032456.log: Copied (new)
2026/05/29 18:36:41 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/1d/5c319e1dfe807cd6edc48c83e27779/.command.out: Copied (new)
2026/05/29 18:36:41 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/1d/5c319e1dfe807cd6edc48c83e27779/.command.run: Copied (new)
2026/05/29 18:36:41 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/work/ec/a12e1b9b0e9e19977cefae95737518/.command.env: Copied (new)
2026/05/29 18:36:41 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/1d/5c319e1dfe807cd6edc48c83e27779/.command.sh: Copied (new)
2026/05/29 18:36:41 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/work/ec/a12e1b9b0e9e19977cefae95737518/.command.err: Copied (new)
2026/05/29 18:36:41 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/work/ec/a12e1b9b0e9e19977cefae95737518/.command.begin: Copied (new)
2026/05/29 18:36:41 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/work/ec/a12e1b9b0e9e19977cefae95737518/.command.out: Copied (new)
2026/05/29 18:36:41 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/work/ec/a12e1b9b0e9e19977cefae95737518/.command.log: Copied (new)
2026/05/29 18:36:41 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/work/ec/a12e1b9b0e9e19977cefae95737518/.command.run: Copied (new)
2026/05/29 18:36:41 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/work/ec/a12e1b9b0e9e19977cefae95737518/.exitcode: Copied (new)
2026/05/29 18:36:41 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/work/ec/a12e1b9b0e9e19977cefae95737518/.command.trace: Copied (new)
2026/05/29 18:36:41 INFO  : ica_logs/work/79/be819d57333871ae2daaf652ca6cde/work/ec/a12e1b9b0e9e19977cefae95737518/.command.sh: Copied (new)
2026/05/29 18:36:41 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/1d/5c319e1dfe807cd6edc48c83e27779/.exitcode: Copied (new)
2026/05/29 18:36:41 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0c/e89aa708758a3c61c8275ac36eb440/.command.begin: Copied (new)
2026/05/29 18:36:41 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/1d/5c319e1dfe807cd6edc48c83e27779/.command.trace: Copied (new)
2026/05/29 18:36:41 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0c/e89aa708758a3c61c8275ac36eb440/.command.err: Copied (new)
2026/05/29 18:36:41 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0c/e89aa708758a3c61c8275ac36eb440/.exitcode: Copied (new)
2026/05/29 18:36:41 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0c/e89aa708758a3c61c8275ac36eb440/.command.trace: Copied (new)
2026/05/29 18:36:41 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0c/e89aa708758a3c61c8275ac36eb440/.command.out: Copied (new)
2026/05/29 18:36:41 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0c/e89aa708758a3c61c8275ac36eb440/.command.log: Copied (new)
2026/05/29 18:36:41 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0c/e89aa708758a3c61c8275ac36eb440/.command.sh: Copied (new)
2026/05/29 18:36:41 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0c/e89aa708758a3c61c8275ac36eb440/.command.run: Copied (new)
2026/05/29 18:36:41 INFO  : Logs_Intermediates/Annotation/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:36:41 INFO  : Logs_Intermediates/LrCalculator/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529031225.log: Copied (new)
2026/05/29 18:36:41 INFO  : Logs_Intermediates/Annotation/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529025715.log: Copied (new)
2026/05/29 18:36:41 INFO  : Logs_Intermediates/LrCalculator/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
2026/05/29 18:36:41 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:36:41 INFO  : ica_logs/out/Logs_Intermediates/SampleAnalysisResults/659_Em-T1-TDNA-1_HLNMCDRX7_1_SARJeantLog-20260529032739.log: Copied (new)
2026/05/29 18:36:41 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.bam.md5sum: Copied (new)
2026/05/29 18:36:41 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:36:41 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/05/29 18:36:41 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.combined.counts.txt.gz: Copied (new)
2026/05/29 18:36:41 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.gff3: Copied (new)
2026/05/29 18:36:41 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/05/29 18:36:41 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.exon_hist.csv: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/Annotation/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_Annotated.json.gz: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/05/29 18:36:42 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/17/c7d969b8a5191e660cbe4ab4ff5f79/.command.log: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.bam.bai: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.fastq_list.csv: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.insert-stats.tab: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_output.json: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_log.txt: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.pileup.txt: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:36:42 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:36:43 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/17/62fe69434d1a64484078217e8344a6/.command.out: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions.txt: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/05/29 18:36:43 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/05/29 18:36:43 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/0a/4bfa70cfcb25e279ac937b0a40d571/Gis/dragen_run_1780020348785_214769.log: Copied (new)
2026/05/29 18:36:43 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/22/3c4d7e23da3f0f191f8732e7e6f7e8/.command.err: Copied (new)
2026/05/29 18:36:43 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/22/3c4d7e23da3f0f191f8732e7e6f7e8/.command.begin: Copied (new)
2026/05/29 18:36:43 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/22/3c4d7e23da3f0f191f8732e7e6f7e8/.command.out: Copied (new)
2026/05/29 18:36:44 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/22/3c4d7e23da3f0f191f8732e7e6f7e8/.command.log: Copied (new)
2026/05/29 18:36:44 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780015502966_47384.log: Copied (new)
2026/05/29 18:36:44 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/0a/4bfa70cfcb25e279ac937b0a40d571/Gis/dragen_syslog_1780020348778_214769.log: Copied (new)
2026/05/29 18:36:44 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/22/3c4d7e23da3f0f191f8732e7e6f7e8/.command.trace: Copied (new)
2026/05/29 18:36:44 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:36:44 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/22/3c4d7e23da3f0f191f8732e7e6f7e8/.exitcode: Copied (new)
2026/05/29 18:36:44 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/22/3c4d7e23da3f0f191f8732e7e6f7e8/gen_coverage_reports.log: Copied (new)
2026/05/29 18:36:44 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/22/3c4d7e23da3f0f191f8732e7e6f7e8/.command.sh: Copied (new)
2026/05/29 18:36:44 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/22/3c4d7e23da3f0f191f8732e7e6f7e8/.command.run: Copied (new)
2026/05/29 18:36:44 INFO  : ica_logs/out/Logs_Intermediates/Annotation/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529031113.log: Copied (new)
2026/05/29 18:36:44 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/df/3a5817e70b66067809540004dfec53/.command.begin: Copied (new)
2026/05/29 18:36:44 INFO  : Logs_Intermediates/FastqGeneration/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna_S31_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:36:44 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/df/3a5817e70b66067809540004dfec53/.command.err: Copied (new)
2026/05/29 18:36:44 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/df/3a5817e70b66067809540004dfec53/.command.log: Copied (new)
2026/05/29 18:36:44 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/df/3a5817e70b66067809540004dfec53/.command.out: Copied (new)
2026/05/29 18:36:44 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/df/3a5817e70b66067809540004dfec53/.command.run: Copied (new)
2026/05/29 18:36:44 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/df/3a5817e70b66067809540004dfec53/.exitcode: Copied (new)
2026/05/29 18:36:44 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/df/3a5817e70b66067809540004dfec53/.command.sh: Copied (new)
2026/05/29 18:36:44 INFO  : ica_logs/work/11/26478e2beb08d72d2793f4b5170801/work/df/3a5817e70b66067809540004dfec53/.command.trace: Copied (new)
2026/05/29 18:36:44 INFO  : Logs_Intermediates/FastqGeneration/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna_S31_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:36:44 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780015502982_47384.log: Copied (new)
2026/05/29 18:36:44 INFO  : Logs_Intermediates/Gis/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:36:44 INFO  : Logs_Intermediates/Gis/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.abcn_genes.tsv: Copied (new)
2026/05/29 18:36:44 INFO  : Logs_Intermediates/Gis/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.baf.bedgraph.gz.gzi: Copied (new)
2026/05/29 18:36:44 INFO  : Logs_Intermediates/Gis/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:36:44 INFO  : Logs_Intermediates/Gis/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.abcn_annotated.vcf: Copied (new)
2026/05/29 18:36:44 INFO  : Logs_Intermediates/Gis/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.gis.json: Copied (new)
2026/05/29 18:36:44 INFO  : Logs_Intermediates/Gis/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.baf.bedgraph.gz: Copied (new)
2026/05/29 18:36:44 INFO  : Logs_Intermediates/Gis/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780020354156_209898.log: Copied (new)
2026/05/29 18:36:44 INFO  : Logs_Intermediates/Gis/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780020354149_209898.log: Copied (new)
2026/05/29 18:36:44 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/22/634c18a2170540076ad0ce82ffc929/.command.begin: Copied (new)
2026/05/29 18:36:44 INFO  : Logs_Intermediates/DnaCoverageReports/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.gene_cov_report.tsv: Copied (new)
2026/05/29 18:36:44 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/22/634c18a2170540076ad0ce82ffc929/.command.err: Copied (new)
2026/05/29 18:36:44 INFO  : Logs_Intermediates/Gis/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna_logRatio.original.tsv: Copied (new)
2026/05/29 18:36:44 INFO  : Logs_Intermediates/DnaCoverageReports/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/05/29 18:36:44 INFO  : Logs_Intermediates/Gis/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna_bAllele.tsv: Copied (new)
2026/05/29 18:36:44 INFO  : Logs_Intermediates/DnaCoverageReports/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.exon_cov_report.tsv: Copied (new)
2026/05/29 18:36:44 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/22/634c18a2170540076ad0ce82ffc929/.command.trace: Copied (new)
2026/05/29 18:36:44 INFO  : Logs_Intermediates/Gis/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna_logRatio.tsv: Copied (new)
2026/05/29 18:36:44 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/22/634c18a2170540076ad0ce82ffc929/.exitcode: Copied (new)
2026/05/29 18:36:44 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/22/634c18a2170540076ad0ce82ffc929/.command.sh: Copied (new)
2026/05/29 18:36:44 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:36:44 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/22/634c18a2170540076ad0ce82ffc929/.command.run: Copied (new)
2026/05/29 18:36:44 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:36:44 INFO  : Logs_Intermediates/Tmb/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:36:44 INFO  : Logs_Intermediates/Tmb/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:36:44 INFO  : Logs_Intermediates/Tmb/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:36:44 INFO  : Logs_Intermediates/Tmb/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:36:44 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:36:44 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780017656281_108700.log: Copied (new)
2026/05/29 18:36:45 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780017656265_108700.log: Copied (new)
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2026/05/29 18:36:48 INFO  : Logs_Intermediates/LrCalculator/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529025716.log: Copied (new)
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2026/05/29 18:36:48 INFO  : ica_logs/out/Logs_Intermediates/Gis/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780020043972_201317.log: Copied (new)
2026/05/29 18:36:48 INFO  : Logs_Intermediates/Gis/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:36:48 INFO  : Logs_Intermediates/Gis/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.abcn_annotated.vcf: Copied (new)
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2026/05/29 18:36:48 INFO  : Logs_Intermediates/Gis/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.baf.bedgraph.gz.gzi: Copied (new)
2026/05/29 18:36:48 INFO  : Logs_Intermediates/Gis/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.gis.json: Copied (new)
2026/05/29 18:36:48 INFO  : Logs_Intermediates/Gis/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.baf.bedgraph.gz: Copied (new)
2026/05/29 18:36:48 INFO  : Logs_Intermediates/Gis/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:36:48 INFO  : Logs_Intermediates/Gis/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780021835202_260353.log: Copied (new)
2026/05/29 18:36:48 INFO  : Logs_Intermediates/Gis/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna_bAllele.tsv: Copied (new)
2026/05/29 18:36:48 INFO  : Logs_Intermediates/Gis/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna_logRatio.tsv: Copied (new)
2026/05/29 18:36:49 INFO  : Logs_Intermediates/Gis/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna_raw.tsv: Copied (new)
2026/05/29 18:36:49 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:36:49 INFO  : Logs_Intermediates/Gis/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780021835195_260353.log: Copied (new)
2026/05/29 18:36:49 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.bam.md5sum: Copied (new)
2026/05/29 18:36:49 INFO  : Logs_Intermediates/Gis/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna_logRatio.original.tsv: Copied (new)
2026/05/29 18:36:49 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:36:49 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.gff3: Copied (new)
2026/05/29 18:36:49 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:36:49 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/05/29 18:36:49 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/05/29 18:36:49 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/05/29 18:36:49 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:36:49 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/05/29 18:36:49 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.bam.bai: Copied (new)
2026/05/29 18:36:49 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/05/29 18:36:49 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.exon_hist.csv: Copied (new)
2026/05/29 18:36:49 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/05/29 18:36:50 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/05/29 18:36:50 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.fastq_list.csv: Copied (new)
2026/05/29 18:36:50 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:36:50 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/05/29 18:36:50 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/05/29 18:36:50 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/05/29 18:36:50 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/05/29 18:36:50 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/05/29 18:36:50 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/05/29 18:36:50 INFO  : Logs_Intermediates/FastqGeneration/1047_MH-T1-TDNA-1_HLNMCDRX7_1_dna/1047_MH-T1-TDNA-1_HLNMCDRX7_1_dna_S30_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:36:50 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/05/29 18:36:50 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/05/29 18:36:50 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/05/29 18:36:50 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:36:50 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:36:51 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.insert-stats.tab: Copied (new)
2026/05/29 18:36:51 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:36:51 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:36:51 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/22/634c18a2170540076ad0ce82ffc929/.command.log: Copied (new)
2026/05/29 18:36:51 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/05/29 18:36:51 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/05/29 18:36:51 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_log.txt: Copied (new)
2026/05/29 18:36:51 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/17/62fe69434d1a64484078217e8344a6/SampleAnalysisResults/1267_E2-T1-TDNA-1_HLNMCDRX7_1_SARJeantLog-20260529033126.log: Copied (new)
2026/05/29 18:36:51 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_output.json: Copied (new)
2026/05/29 18:36:51 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:36:51 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/05/29 18:36:51 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:36:51 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:36:51 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.pileup.txt: Copied (new)
2026/05/29 18:36:51 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:36:51 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:36:51 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:36:51 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:36:51 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:36:51 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:36:51 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:36:51 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/05/29 18:36:51 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/05/29 18:36:51 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/05/29 18:36:51 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:36:51 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:36:51 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/05/29 18:36:51 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/05/29 18:36:51 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/05/29 18:36:51 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:36:52 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/05/29 18:36:52 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/05/29 18:36:52 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:36:52 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/05/29 18:36:52 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/05/29 18:36:52 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/05/29 18:36:52 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/05/29 18:36:52 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/05/29 18:36:52 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/05/29 18:36:52 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/05/29 18:36:52 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:36:52 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:36:52 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:36:52 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/22/634c18a2170540076ad0ce82ffc929/.command.out: Copied (new)
2026/05/29 18:36:52 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/05/29 18:36:52 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/05/29 18:36:52 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/05/29 18:36:52 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/05/29 18:36:52 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/05/29 18:36:52 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/05/29 18:36:52 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/05/29 18:36:52 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions.txt: Copied (new)
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2026/05/29 18:36:52 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/0c/5e73ac72a3345167d7fbfa7fa5bc6a/Contamination/Spoiler-20260529025046.log: Copied (new)
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2026/05/29 18:36:52 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780016543833_77093.log: Copied (new)
2026/05/29 18:36:52 INFO  : Logs_Intermediates/Tmb/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:36:52 INFO  : Logs_Intermediates/Tmb/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:36:53 INFO  : Logs_Intermediates/Tmb/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:36:53 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:36:53 INFO  : Logs_Intermediates/Tmb/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.tmb.metrics.csv: Copied (new)
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2026/05/29 18:36:53 INFO  : Logs_Intermediates/Tmb/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:36:53 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780016543849_77093.log: Copied (new)
2026/05/29 18:36:53 INFO  : Logs_Intermediates/Tmb/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.tmb.trace.tsv: Copied (new)
2026/05/29 18:36:53 INFO  : Logs_Intermediates/Tmb/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529015617.log: Copied (new)
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2026/05/29 18:36:53 INFO  : Logs_Intermediates/Annotation/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:36:53 INFO  : Logs_Intermediates/Tmb/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780024337093_325737.log: Copied (new)
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2026/05/29 18:36:53 INFO  : Logs_Intermediates/DnaCoverageReports/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.gene_cov_report.tsv: Copied (new)
2026/05/29 18:36:53 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/23/aad1e3591392bf9992c6de3a83c138/.command.begin: Copied (new)
2026/05/29 18:36:53 INFO  : Logs_Intermediates/DnaCoverageReports/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.exon_cov_report.tsv: Copied (new)
2026/05/29 18:36:53 INFO  : Logs_Intermediates/DnaCoverageReports/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/05/29 18:36:53 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/23/aad1e3591392bf9992c6de3a83c138/.command.err: Copied (new)
2026/05/29 18:36:53 INFO  : Logs_Intermediates/Tmb/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz: Copied (new)
2026/05/29 18:36:53 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/23/aad1e3591392bf9992c6de3a83c138/.command.run: Copied (new)
2026/05/29 18:36:53 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/23/aad1e3591392bf9992c6de3a83c138/.command.sh: Copied (new)
2026/05/29 18:36:53 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/23/aad1e3591392bf9992c6de3a83c138/.command.trace: Copied (new)
2026/05/29 18:36:53 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/23/aad1e3591392bf9992c6de3a83c138/.exitcode: Copied (new)
2026/05/29 18:36:53 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:36:53 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:36:53 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:36:53 INFO  : Logs_Intermediates/Annotation/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_Annotated.json.gz: Copied (new)
2026/05/29 18:36:54 INFO  : ica_logs/out/Logs_Intermediates/DnaCoverageReports/1047_MH-T1-TDNA-1_HLNMCDRX7_1_dna/gen_coverage_reports.log: Copied (new)
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2026/05/29 18:36:54 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529004110.log: Copied (new)
2026/05/29 18:36:54 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780022014186_273876.log: Copied (new)
2026/05/29 18:36:54 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1029_5OV-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780022014179_273876.log: Copied (new)
2026/05/29 18:36:54 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/16/289ac6a91fce699c147acdc7f213ee/DnaDragenExonCnvCaller/dragen_run_1780020419601_213922.log: Copied (new)
2026/05/29 18:36:55 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.combined.counts.txt.gz: Copied (new)
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2026/05/29 18:36:55 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
2026/05/29 18:36:55 INFO  : Logs_Intermediates/LrAnnotation/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna_DNAExonCNV_Annotated.json.gz: Copied (new)
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2026/05/29 18:36:55 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/1029_JAD-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529025312.log: Copied (new)
2026/05/29 18:36:55 INFO  : Logs_Intermediates/LrAnnotation/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529031226.log: Copied (new)
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2026/05/29 18:36:55 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/16/266bcc06194c74f7894648fdf107f1/.command.run: Copied (new)
2026/05/29 18:36:55 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/16/266bcc06194c74f7894648fdf107f1/.command.trace: Copied (new)
2026/05/29 18:36:55 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/16/266bcc06194c74f7894648fdf107f1/.exitcode: Copied (new)
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2026/05/29 18:36:55 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780022068179_266846.log: Copied (new)
2026/05/29 18:36:56 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780022068171_266846.log: Copied (new)
2026/05/29 18:36:56 INFO  : Logs_Intermediates/CombinedVariantOutput/1267_ES-T1-TDNA-1_HLNMCDRX7_1/1267_ES-T1-TDNA-1_HLNMCDRX7_1_CombinedVariantOutput.tsv: Copied (new)
2026/05/29 18:36:56 INFO  : Logs_Intermediates/MetricsOutput/1267_EO-T1-TDNA-1_HLNMCDRX7_1/1267_EO-T1-TDNA-1_HLNMCDRX7_1_MetricsOutput.tsv: Copied (new)
2026/05/29 18:36:56 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/19/0ea39208534f1b8e93b8285fffb793/.command.begin: Copied (new)
2026/05/29 18:36:56 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/19/0ea39208534f1b8e93b8285fffb793/.command.err: Copied (new)
2026/05/29 18:36:56 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/19/0ea39208534f1b8e93b8285fffb793/.command.log: Copied (new)
2026/05/29 18:36:56 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/19/0ea39208534f1b8e93b8285fffb793/.command.out: Copied (new)
2026/05/29 18:36:56 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/19/0ea39208534f1b8e93b8285fffb793/.command.run: Copied (new)
2026/05/29 18:36:56 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/19/0ea39208534f1b8e93b8285fffb793/.exitcode: Copied (new)
2026/05/29 18:36:56 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/19/0ea39208534f1b8e93b8285fffb793/.command.sh: Copied (new)
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2026/05/29 18:36:56 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:36:56 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:36:56 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:36:56 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:36:57 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
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2026/05/29 18:36:57 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:36:57 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:36:57 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:36:57 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:36:57 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/05/29 18:36:58 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:36:58 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
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2026/05/29 18:36:58 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:36:58 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/05/29 18:36:58 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780020179682_202859.log: Copied (new)
2026/05/29 18:36:58 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780020179675_202859.log: Copied (new)
2026/05/29 18:36:58 INFO  : Logs_Intermediates/nextflow_work_logs/19/0ea39208534f1b8e93b8285fffb793/.command.err: Copied (new)
2026/05/29 18:36:59 INFO  : Logs_Intermediates/nextflow_work_logs/19/0ea39208534f1b8e93b8285fffb793/.command.log: Copied (new)
2026/05/29 18:36:59 INFO  : Logs_Intermediates/nextflow_work_logs/19/0ea39208534f1b8e93b8285fffb793/.command.out: Copied (new)
2026/05/29 18:36:59 INFO  : 
Transferred:   	  173.960 GiB / 383.137 GiB, 45%, 1.299 GiB/s, ETA 2m41s
Transferred:         5273 / 14458, 36%
Elapsed time:       2m0.0s
Transferring:
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 94% /3.623Gi, 19.421Mi/s, 11s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 94% /3.657Gi, 24.018Mi/s, 8s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 92% /3.766Gi, 28.863Mi/s, 10s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 64% /4.486Gi, 23.406Mi/s, 1m9s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 90% /3.694Gi, 26.927Mi/s, 13s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 72% /4.157Gi, 25.398Mi/s, 46s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 79% /3.803Gi, 25.941Mi/s, 30s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 76% /3.751Gi, 27.081Mi/s, 33s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 63% /4.148Gi, 28.074Mi/s, 55s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 55% /4.633Gi, 26.370Mi/s, 1m19s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 48% /4.466Gi, 24.023Mi/s, 1m37s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 54% /4.678Gi, 28.283Mi/s, 1m17s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 43% /4.499Gi, 24.801Mi/s, 1m44s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 46% /4.415Gi, 25.604Mi/s, 1m34s
 * Logs_Intermediates/Fas…2_L001_R1_001.fastq.gz: 91% /1.981Gi, 23.780Mi/s, 7s
 * Logs_Intermediates/Fas…2_L001_R2_001.fastq.gz: 97% /2.050Gi, 27.122Mi/s, 1s
 * Logs_Intermediates/Fas…2_L002_R1_001.fastq.gz: 98% /1.938Gi, 28.123Mi/s, 1s
 * Logs_Intermediates/Fas…2_L002_R2_001.fastq.gz: 93% /2.006Gi, 24.596Mi/s, 5s
 * Logs_Intermediates/Fas…7_L001_R1_001.fastq.gz: 96% /1.803Gi, 25.691Mi/s, 2s
 * Logs_Intermediates/Fas…7_L001_R2_001.fastq.gz: 87% /1.851Gi, 23.091Mi/s, 10s
 * Logs_Intermediates/Fas…7_L002_R1_001.fastq.gz: 84% /1.768Gi, 20.061Mi/s, 13s
 * Logs_Intermediates/Fas…7_L002_R2_001.fastq.gz: 85% /1.817Gi, 19.288Mi/s, 13s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 30% /5.954Gi, 25.871Mi/s, 2m43s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 32% /4.890Gi, 25.531Mi/s, 2m12s
 * Logs_Intermediates/Fas…6_L001_R1_001.fastq.gz: 44% /3.727Gi, 28.486Mi/s, 1m14s
 * Logs_Intermediates/Fas…6_L001_R2_001.fastq.gz: 41% /3.787Gi, 25.859Mi/s, 1m28s
 * Logs_Intermediates/Fas…6_L002_R1_001.fastq.gz: 44% /3.640Gi, 30.056Mi/s, 1m8s
 * Logs_Intermediates/Fas…6_L002_R2_001.fastq.gz: 43% /3.699Gi, 30.704Mi/s, 1m9s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 13% /8.846Gi, 21.644Mi/s, 6m0s
 * Logs_Intermediates/Fas…8_L001_R1_001.fastq.gz: 54% /1.497Gi, 20.923Mi/s, 33s
 * Logs_Intermediates/Fas…8_L001_R2_001.fastq.gz: 44% /1.553Gi, 18.240Mi/s, 48s
 * Logs_Intermediates/Fas…8_L002_R1_001.fastq.gz: 69% /1.435Gi, 29.635Mi/s, 15s
 * Logs_Intermediates/Fas…8_L002_R2_001.fastq.gz: 54% /1.490Gi, 20.485Mi/s, 33s
 * Logs_Intermediates/Fas…0_L001_R1_001.fastq.gz: 50% /1.484Gi, 23.142Mi/s, 32s
 * Logs_Intermediates/Fas…0_L001_R2_001.fastq.gz: 42% /1.531Gi, 17.950Mi/s, 49s
 * Logs_Intermediates/Fas…0_L002_R1_001.fastq.gz: 60% /1.443Gi, 25.606Mi/s, 22s
 * Logs_Intermediates/Fas…0_L002_R2_001.fastq.gz: 62% /1.489Gi, 29.203Mi/s, 19s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 19% /4.210Gi, 26.194Mi/s, 2m12s
 * Logs_Intermediates/Fas…9_L001_R1_001.fastq.gz: 42% /1.600Gi, 22.551Mi/s, 41s
 * Logs_Intermediates/Fas…9_L001_R2_001.fastq.gz: 39% /1.655Gi, 24.094Mi/s, 42s
 * Logs_Intermediates/Fas…9_L002_R1_001.fastq.gz: 37% /1.565Gi, 20.876Mi/s, 47s
 * Logs_Intermediates/Fas…9_L002_R2_001.fastq.gz: 40% /1.620Gi, 23.396Mi/s, 42s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 19% /4.068Gi, 28.997Mi/s, 1m56s
 * ica_logs/work/c6/f7cdd…ab4ff5f79/.command.out: 89% /70.605Mi, 2.806Mi/s, 2s
 * Logs_Intermediates/Fas…3_L001_R1_001.fastq.gz: 41% /1.061Gi, 19.197Mi/s, 33s
 * Logs_Intermediates/Fas…3_L001_R2_001.fastq.gz: 45% /1.091Gi, 22.585Mi/s, 26s
 * Logs_Intermediates/Fas…3_L002_R1_001.fastq.gz: 50% /1010.483Mi, 21.913Mi/s, 22s
 * Logs_Intermediates/Fas…3_L002_R2_001.fastq.gz: 64% /1.014Gi, 30.035Mi/s, 12s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 10% /4.417Gi, 22.683Mi/s, 2m58s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 14% /3.346Gi, 26.250Mi/s, 1m52s
 * Logs_Intermediates/Fas…1_L001_R1_001.fastq.gz: 16% /1.320Gi, 16.000Mi/s, 1m10s
 * Logs_Intermediates/Fas…1_L001_R2_001.fastq.gz: 18% /1.368Gi, 18.286Mi/s, 1m2s
 * Logs_Intermediates/Fas…1_L002_R1_001.fastq.gz: 17% /1.258Gi, 16.000Mi/s, 1m6s
 * Logs_Intermediates/Fas…1_L002_R2_001.fastq.gz: 11% /1.306Gi, 11.429Mi/s, 1m42s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam:  7% /3.864Gi, 28.800Mi/s, 2m7s
 * ica_logs/work/c6/f7cdd…e3a83c138/.command.log: 24% /68.653Mi, 2.999Mi/s, 17s
 * ica_logs/work/c6/f7cdd…e3a83c138/.command.out: 53% /68.653Mi, 7.399Mi/s, 4s
 * Logs_Intermediates/Fas…5_L001_R1_001.fastq.gz:  0% /4.295Gi, 0/s, -
 * Logs_Intermediates/Fas…5_L001_R2_001.fastq.gz:  1% /4.458Gi, 12.800Mi/s, 5m51s
 * Logs_Intermediates/Fas…5_L002_R1_001.fastq.gz:  0% /4.151Gi, 0/s, -
 * Logs_Intermediates/Fas…5_L002_R2_001.fastq.gz:  2% /4.316Gi, 25.600Mi/s, 2m47s
 * Logs_Intermediates/Dna…combined.counts.txt.gz: 42% /23.642Mi, 4.498Mi/s, 3s
 * ica_logs/work/c6/f7cdd…Log-20260529033006.log:  5% /70.490Mi, 0/s, -
 * Logs_Intermediates/nex…85fffb793/.command.run:100% /12.062Ki, 0/s, -

2026/05/29 18:36:59 INFO  : Logs_Intermediates/nextflow_work_logs/19/0ea39208534f1b8e93b8285fffb793/.command.run: Copied (new)
2026/05/29 18:36:59 INFO  : Logs_Intermediates/nextflow_work_logs/19/0ea39208534f1b8e93b8285fffb793/.command.sh: Copied (new)
2026/05/29 18:36:59 INFO  : ica_logs/out/Logs_Intermediates/Contamination/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529032455.log: Copied (new)
2026/05/29 18:36:59 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/20/feb886dc19ef76c86185fabfaa1ca9/Tmb/dragen_run_1780024203844_319420.log: Copied (new)
2026/05/29 18:36:59 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/20/feb886dc19ef76c86185fabfaa1ca9/Tmb/dragen_syslog_1780024203836_319420.log: Copied (new)
2026/05/29 18:37:00 INFO  : Logs_Intermediates/LrCalculator/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
2026/05/29 18:37:00 INFO  : Logs_Intermediates/LrCalculator/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529025719.log: Copied (new)
2026/05/29 18:37:00 INFO  : Logs_Intermediates/Contamination/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna_contamination.json: Copied (new)
2026/05/29 18:37:00 INFO  : Logs_Intermediates/Contamination/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529031014.log: Copied (new)
2026/05/29 18:37:00 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2a/913dafec84574a4274b656f0f9a225/.command.begin: Copied (new)
2026/05/29 18:37:01 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2a/913dafec84574a4274b656f0f9a225/.command.err: Copied (new)
2026/05/29 18:37:01 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2a/913dafec84574a4274b656f0f9a225/.command.log: Copied (new)
2026/05/29 18:37:01 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2a/913dafec84574a4274b656f0f9a225/.command.out: Copied (new)
2026/05/29 18:37:01 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2a/913dafec84574a4274b656f0f9a225/.command.run: Copied (new)
2026/05/29 18:37:01 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2a/913dafec84574a4274b656f0f9a225/.command.sh: Copied (new)
2026/05/29 18:37:02 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2a/913dafec84574a4274b656f0f9a225/.command.trace: Copied (new)
2026/05/29 18:37:02 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2a/913dafec84574a4274b656f0f9a225/.exitcode: Copied (new)
2026/05/29 18:37:02 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/12/6e3dadc7c33cf324d403a46ef72b47/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:37:02 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.combined.counts.txt.gz: Copied (new)
2026/05/29 18:37:02 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/12/6e3dadc7c33cf324d403a46ef72b47/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:37:02 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/17/c7d969b8a5191e660cbe4ab4ff5f79/.command.out: Copied (new)
2026/05/29 18:37:02 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/12/6e3dadc7c33cf324d403a46ef72b47/DnaDragenCaller/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:37:02 INFO  : Logs_Intermediates/Gis/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:37:02 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/12/6e3dadc7c33cf324d403a46ef72b47/DnaDragenCaller/dragen_syslog_1780018230582_124524.log: Copied (new)
2026/05/29 18:37:03 INFO  : Logs_Intermediates/Gis/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.abcn_annotated.vcf: Copied (new)
2026/05/29 18:37:03 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/12/6e3dadc7c33cf324d403a46ef72b47/DnaDragenCaller/dragen_run_1780018230597_124524.log: Copied (new)
2026/05/29 18:37:03 INFO  : Logs_Intermediates/Gis/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.abcn_genes.tsv: Copied (new)
2026/05/29 18:37:03 INFO  : Logs_Intermediates/Gis/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.baf.bedgraph.gz.gzi: Copied (new)
2026/05/29 18:37:03 INFO  : Logs_Intermediates/Gis/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.gis.json: Copied (new)
2026/05/29 18:37:03 INFO  : Logs_Intermediates/Gis/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.baf.bedgraph.gz: Copied (new)
2026/05/29 18:37:03 INFO  : Logs_Intermediates/Gis/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:37:03 INFO  : Logs_Intermediates/Gis/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna_bAllele.tsv: Copied (new)
2026/05/29 18:37:03 INFO  : Logs_Intermediates/Gis/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna_logRatio.original.tsv: Copied (new)
2026/05/29 18:37:04 INFO  : Logs_Intermediates/Gis/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780022994590_299562.log: Copied (new)
2026/05/29 18:37:04 INFO  : Logs_Intermediates/Gis/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780022994583_299562.log: Copied (new)
2026/05/29 18:37:04 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/2c/4f5fc801c3c280575375df9c08066d/.command.begin: Copied (new)
2026/05/29 18:37:04 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/2c/4f5fc801c3c280575375df9c08066d/.command.err: Copied (new)
2026/05/29 18:37:04 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/2c/4f5fc801c3c280575375df9c08066d/.command.log: Copied (new)
2026/05/29 18:37:04 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/2c/4f5fc801c3c280575375df9c08066d/.command.out: Copied (new)
2026/05/29 18:37:05 INFO  : Logs_Intermediates/Gis/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna_logRatio.tsv: Copied (new)
2026/05/29 18:37:05 INFO  : Logs_Intermediates/FastqGeneration/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna_S27_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:37:05 INFO  : Logs_Intermediates/Gis/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna_raw.tsv: Copied (new)
2026/05/29 18:37:05 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/2c/4f5fc801c3c280575375df9c08066d/.command.run: Copied (new)
2026/05/29 18:37:05 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/2c/4f5fc801c3c280575375df9c08066d/.command.sh: Copied (new)
2026/05/29 18:37:05 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/2c/4f5fc801c3c280575375df9c08066d/.command.trace: Copied (new)
2026/05/29 18:37:05 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/2c/4f5fc801c3c280575375df9c08066d/.exitcode: Copied (new)
2026/05/29 18:37:05 INFO  : ica_logs/out/Logs_Intermediates/Gis/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780021642146_257120.log: Copied (new)
2026/05/29 18:37:05 INFO  : ica_logs/out/Logs_Intermediates/Annotation/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529030933.log: Copied (new)
2026/05/29 18:37:05 INFO  : ica_logs/out/Logs_Intermediates/Gis/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780021642139_257120.log: Copied (new)
2026/05/29 18:37:05 INFO  : Logs_Intermediates/Annotation/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:37:05 INFO  : Logs_Intermediates/FastqGeneration/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna_S32_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:37:05 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/2f/f8ba9c9b6c2c96bf82de1fae13cf15/.command.begin: Copied (new)
2026/05/29 18:37:05 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/2f/f8ba9c9b6c2c96bf82de1fae13cf15/.command.env: Copied (new)
2026/05/29 18:37:05 INFO  : Logs_Intermediates/Annotation/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529023541.log: Copied (new)
2026/05/29 18:37:05 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/2f/f8ba9c9b6c2c96bf82de1fae13cf15/.command.err: Copied (new)
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2026/05/29 18:37:05 INFO  : Logs_Intermediates/Tmb/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
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2026/05/29 18:37:06 INFO  : Logs_Intermediates/FastqGeneration/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna_S32_L002_R2_001.fastq.gz: Multi-thread Copied (new)
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2026/05/29 18:37:06 INFO  : Logs_Intermediates/Tmb/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529004414.log: Copied (new)
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2026/05/29 18:37:07 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780022041133_275377.log: Copied (new)
2026/05/29 18:37:07 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780022041126_275377.log: Copied (new)
2026/05/29 18:37:07 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
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2026/05/29 18:37:10 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/05/29 18:37:10 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:37:10 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/05/29 18:37:10 INFO  : Logs_Intermediates/FastqGeneration/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna_S32_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:37:10 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
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2026/05/29 18:37:10 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna.bam: Multi-thread Copied (new)
2026/05/29 18:37:10 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
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2026/05/29 18:37:11 INFO  : Logs_Intermediates/FastqGeneration/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna_S32_L001_R1_001.fastq.gz: Multi-thread Copied (new)
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2026/05/29 18:37:11 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
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2026/05/29 18:37:11 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_output.json: Copied (new)
2026/05/29 18:37:11 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.pileup.txt: Copied (new)
2026/05/29 18:37:11 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:37:11 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:37:11 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:37:11 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:37:11 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:37:11 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:37:11 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:37:11 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:37:11 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:37:11 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:37:11 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/05/29 18:37:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/05/29 18:37:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/05/29 18:37:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/05/29 18:37:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/05/29 18:37:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/05/29 18:37:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:37:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:37:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/05/29 18:37:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/05/29 18:37:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/05/29 18:37:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/05/29 18:37:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/05/29 18:37:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/05/29 18:37:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/05/29 18:37:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:37:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/05/29 18:37:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/05/29 18:37:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:37:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:37:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/05/29 18:37:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/05/29 18:37:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/05/29 18:37:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/05/29 18:37:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/05/29 18:37:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/05/29 18:37:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/05/29 18:37:12 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/05/29 18:37:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780018798983_138856.log: Copied (new)
2026/05/29 18:37:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780018798966_138856.log: Copied (new)
2026/05/29 18:37:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
2026/05/29 18:37:13 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0c/e89aa708758a3c61c8275ac36eb440/Tmb/dragen_run_1780023279977_308897.log: Copied (new)
2026/05/29 18:37:13 INFO  : Logs_Intermediates/CombinedVariantOutput/1267_FC-T1-TDNA-1_HLNMCDRX7_1/1267_FC-T1-TDNA-1_HLNMCDRX7_1_CombinedVariantOutput.tsv: Copied (new)
2026/05/29 18:37:13 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/1e/f6e49180b922dc529879c862573bae/.command.begin: Copied (new)
2026/05/29 18:37:13 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529025315.log: Copied (new)
2026/05/29 18:37:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:37:13 INFO  : Logs_Intermediates/FastqGeneration/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna_S27_L002_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:37:13 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/1e/f6e49180b922dc529879c862573bae/.command.err: Copied (new)
2026/05/29 18:37:13 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/0c/e89aa708758a3c61c8275ac36eb440/Tmb/dragen_syslog_1780023279970_308897.log: Copied (new)
2026/05/29 18:37:13 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions.txt: Copied (new)
2026/05/29 18:37:13 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/1e/f6e49180b922dc529879c862573bae/.command.run: Copied (new)
2026/05/29 18:37:13 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/1e/f6e49180b922dc529879c862573bae/.command.out: Copied (new)
2026/05/29 18:37:13 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/1e/f6e49180b922dc529879c862573bae/.command.log: Copied (new)
2026/05/29 18:37:13 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/1e/f6e49180b922dc529879c862573bae/.command.trace: Copied (new)
2026/05/29 18:37:13 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/1e/f6e49180b922dc529879c862573bae/.exitcode: Copied (new)
2026/05/29 18:37:13 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/1e/f6e49180b922dc529879c862573bae/.command.sh: Copied (new)
2026/05/29 18:37:13 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/1e/f6e49180b922dc529879c862573bae/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:37:13 INFO  : Logs_Intermediates/nextflow_work_logs/1e/f6e49180b922dc529879c862573bae/.command.err: Copied (new)
2026/05/29 18:37:13 INFO  : Logs_Intermediates/nextflow_work_logs/1e/f6e49180b922dc529879c862573bae/.command.log: Copied (new)
2026/05/29 18:37:13 INFO  : Logs_Intermediates/nextflow_work_logs/1e/f6e49180b922dc529879c862573bae/.command.out: Copied (new)
2026/05/29 18:37:13 INFO  : Logs_Intermediates/Contamination/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna_contamination.json: Copied (new)
2026/05/29 18:37:13 INFO  : Logs_Intermediates/nextflow_work_logs/1e/f6e49180b922dc529879c862573bae/.command.run: Copied (new)
2026/05/29 18:37:13 INFO  : Logs_Intermediates/nextflow_work_logs/1e/f6e49180b922dc529879c862573bae/.command.sh: Copied (new)
2026/05/29 18:37:13 INFO  : Logs_Intermediates/Contamination/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529031019.log: Copied (new)
2026/05/29 18:37:13 INFO  : Logs_Intermediates/LrAnnotation/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna_DNAExonCNV_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:37:13 INFO  : Logs_Intermediates/FastqGeneration/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna_S27_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:37:13 INFO  : Logs_Intermediates/LrCalculator/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
2026/05/29 18:37:13 INFO  : ica_logs/out/Logs_Intermediates/Contamination/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529032453.log: Copied (new)
2026/05/29 18:37:13 INFO  : Logs_Intermediates/LrAnnotation/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529025716.log: Copied (new)
2026/05/29 18:37:13 INFO  : Logs_Intermediates/LrAnnotation/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna_DNAExonCNV_Annotated.json.gz: Copied (new)
2026/05/29 18:37:13 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:37:13 INFO  : Logs_Intermediates/LrCalculator/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529025721.log: Copied (new)
2026/05/29 18:37:13 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:37:13 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:37:13 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:37:13 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:37:13 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:37:14 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:37:14 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:37:14 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:37:14 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:37:14 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/05/29 18:37:14 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:37:14 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:37:14 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:37:14 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:37:14 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1047_MH-T1-TDNA-1_HLNMCDRX7_1_dna/1047_MH-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:37:14 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/05/29 18:37:14 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1047_MH-T1-TDNA-1_HLNMCDRX7_1_dna/1047_MH-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:37:14 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780021662479_253397.log: Copied (new)
2026/05/29 18:37:14 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780021662471_253397.log: Copied (new)
2026/05/29 18:37:14 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1047_MH-T1-TDNA-1_HLNMCDRX7_1_dna/1047_MH-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:37:14 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna.bam: Multi-thread Copied (new)
2026/05/29 18:37:14 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/14/cb9368643fbcae18ea0088d17c1c18/DnaDragenExonCnvCaller/dragen_run_1780020179682_202859.log: Copied (new)
2026/05/29 18:37:14 INFO  : Logs_Intermediates/Annotation/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529023717.log: Copied (new)
2026/05/29 18:37:14 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1047_MH-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780016294670_67660.log: Copied (new)
2026/05/29 18:37:14 INFO  : Logs_Intermediates/Annotation/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:37:14 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1047_MH-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780016294654_67660.log: Copied (new)
2026/05/29 18:37:14 INFO  : ica_logs/out/Logs_Intermediates/Annotation/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529025510.log: Copied (new)
2026/05/29 18:37:14 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2c/0ece23ada8ca34c9f41de3d4e09b84/.command.begin: Copied (new)
2026/05/29 18:37:14 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/14/cb9368643fbcae18ea0088d17c1c18/DnaDragenExonCnvCaller/dragen_syslog_1780020179675_202859.log: Copied (new)
2026/05/29 18:37:14 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2c/0ece23ada8ca34c9f41de3d4e09b84/.command.err: Copied (new)
2026/05/29 18:37:14 INFO  : Logs_Intermediates/Annotation/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_Annotated.json.gz: Copied (new)
2026/05/29 18:37:14 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2c/0ece23ada8ca34c9f41de3d4e09b84/.command.run: Copied (new)
2026/05/29 18:37:14 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2c/0ece23ada8ca34c9f41de3d4e09b84/.command.trace: Copied (new)
2026/05/29 18:37:14 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2c/0ece23ada8ca34c9f41de3d4e09b84/.command.sh: Copied (new)
2026/05/29 18:37:14 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2c/0ece23ada8ca34c9f41de3d4e09b84/.command.out: Copied (new)
2026/05/29 18:37:14 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2c/0ece23ada8ca34c9f41de3d4e09b84/.exitcode: Copied (new)
2026/05/29 18:37:14 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2c/0ece23ada8ca34c9f41de3d4e09b84/.command.log: Copied (new)
2026/05/29 18:37:14 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:37:14 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.bam.md5sum: Copied (new)
2026/05/29 18:37:14 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:37:14 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.gff3: Copied (new)
2026/05/29 18:37:14 INFO  : Logs_Intermediates/FastqGeneration/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna_S27_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.exon_hist.csv: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.combined.counts.txt.gz: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.fastq_list.csv: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.insert-stats.tab: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_log.txt: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.bam.bai: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_output.json: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.pileup.txt: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:37:15 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:37:16 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:37:16 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:37:16 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:37:16 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:37:16 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:37:16 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/05/29 18:37:16 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/05/29 18:37:16 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:37:16 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/05/29 18:37:16 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:37:16 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/05/29 18:37:16 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/05/29 18:37:16 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/05/29 18:37:16 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:37:16 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/05/29 18:37:16 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:37:16 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/05/29 18:37:16 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/05/29 18:37:16 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/05/29 18:37:16 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/05/29 18:37:16 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
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2026/05/29 18:37:16 INFO  : Logs_Intermediates/FastqGeneration/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna_S23_L002_R2_001.fastq.gz: Multi-thread Copied (new)
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2026/05/29 18:37:16 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions.txt: Copied (new)
2026/05/29 18:37:16 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/31/01e69d0c416e95295b34b15ba0c012/.command.err: Copied (new)
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2026/05/29 18:37:17 INFO  : Logs_Intermediates/MetricsOutput/1267_ES-T1-TDNA-1_HLNMCDRX7_1/1267_ES-T1-TDNA-1_HLNMCDRX7_1_MetricsOutput.tsv: Copied (new)
2026/05/29 18:37:17 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/31/01e69d0c416e95295b34b15ba0c012/.command.begin: Copied (new)
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2026/05/29 18:37:17 INFO  : Logs_Intermediates/Gis/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.abcn_genes.tsv: Copied (new)
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2026/05/29 18:37:17 INFO  : Logs_Intermediates/Gis/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
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2026/05/29 18:37:17 INFO  : Logs_Intermediates/Tmb/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:37:17 INFO  : Logs_Intermediates/Tmb/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
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2026/05/29 18:37:17 INFO  : Logs_Intermediates/Tmb/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529012004.log: Copied (new)
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2026/05/29 18:37:17 INFO  : Logs_Intermediates/Tmb/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780023369171_313394.log: Copied (new)
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2026/05/29 18:37:17 INFO  : Logs_Intermediates/DnaCoverageReports/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.gene_cov_report.tsv: Copied (new)
2026/05/29 18:37:17 INFO  : Logs_Intermediates/DnaCoverageReports/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/gen_coverage_reports.log: Copied (new)
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2026/05/29 18:37:17 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780022982790_280491.log: Copied (new)
2026/05/29 18:37:17 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529025314.log: Copied (new)
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2026/05/29 18:37:18 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1029_BD5A-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529005800.log: Copied (new)
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2026/05/29 18:37:18 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/1e/ffab674744ff45514a056d24de7b68/LrCalculator/LrCalculator-20260529025314.log: Copied (new)
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2026/05/29 18:37:18 INFO  : Logs_Intermediates/CombinedVariantOutput/1267_Q-T1-TDNA-1_HLNMCDRX7_1/1267_Q-T1-TDNA-1_HLNMCDRX7_1_CombinedVariantOutput.tsv: Copied (new)
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2026/05/29 18:37:18 INFO  : Logs_Intermediates/Contamination/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529031021.log: Copied (new)
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2026/05/29 18:37:18 INFO  : Logs_Intermediates/FastqGeneration/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna_S20_L002_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:37:18 INFO  : ica_logs/out/Logs_Intermediates/Contamination/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529032453.log: Copied (new)
2026/05/29 18:37:18 INFO  : Logs_Intermediates/LrAnnotation/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna_DNAExonCNV_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:37:18 INFO  : Logs_Intermediates/LrAnnotation/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529025719.log: Copied (new)
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2026/05/29 18:37:18 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/21/de4456c4b834a20bda7fcc6b5c9423/.command.out: Copied (new)
2026/05/29 18:37:18 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/21/de4456c4b834a20bda7fcc6b5c9423/.exitcode: Copied (new)
2026/05/29 18:37:18 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/2f/d7f75941b2fa1933f3da7c8b044c12/.command.begin: Copied (new)
2026/05/29 18:37:18 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/21/de4456c4b834a20bda7fcc6b5c9423/.command.trace: Copied (new)
2026/05/29 18:37:18 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.bam: Multi-thread Copied (new)
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2026/05/29 18:37:18 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/2f/d7f75941b2fa1933f3da7c8b044c12/.command.err: Copied (new)
2026/05/29 18:37:18 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/2f/d7f75941b2fa1933f3da7c8b044c12/.command.log: Copied (new)
2026/05/29 18:37:18 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/2f/d7f75941b2fa1933f3da7c8b044c12/.command.run: Copied (new)
2026/05/29 18:37:19 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/2f/d7f75941b2fa1933f3da7c8b044c12/.exitcode: Copied (new)
2026/05/29 18:37:19 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/2f/d7f75941b2fa1933f3da7c8b044c12/.command.trace: Copied (new)
2026/05/29 18:37:19 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/2f/d7f75941b2fa1933f3da7c8b044c12/.command.sh: Copied (new)
2026/05/29 18:37:19 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2c/dc6650b5ac60705a3a6a6c0b0f69b1/.command.begin: Copied (new)
2026/05/29 18:37:19 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/2f/d7f75941b2fa1933f3da7c8b044c12/.command.out: Copied (new)
2026/05/29 18:37:19 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2c/dc6650b5ac60705a3a6a6c0b0f69b1/.command.err: Copied (new)
2026/05/29 18:37:19 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2c/dc6650b5ac60705a3a6a6c0b0f69b1/.command.log: Copied (new)
2026/05/29 18:37:19 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2c/dc6650b5ac60705a3a6a6c0b0f69b1/.command.out: Copied (new)
2026/05/29 18:37:19 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2c/dc6650b5ac60705a3a6a6c0b0f69b1/.exitcode: Copied (new)
2026/05/29 18:37:19 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2c/dc6650b5ac60705a3a6a6c0b0f69b1/.command.trace: Copied (new)
2026/05/29 18:37:19 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2c/dc6650b5ac60705a3a6a6c0b0f69b1/.command.run: Copied (new)
2026/05/29 18:37:19 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2c/dc6650b5ac60705a3a6a6c0b0f69b1/.command.sh: Copied (new)
2026/05/29 18:37:19 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2c/dc6650b5ac60705a3a6a6c0b0f69b1/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:37:19 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:37:19 INFO  : Logs_Intermediates/FastqGeneration/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna_S23_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:37:19 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:37:19 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:37:19 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:37:19 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:37:19 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:37:19 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:37:19 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:37:19 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:37:19 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:37:19 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:37:19 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780022831383_292972.log: Copied (new)
2026/05/29 18:37:19 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:37:19 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/05/29 18:37:19 INFO  : Logs_Intermediates/LrCalculator/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
2026/05/29 18:37:19 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/05/29 18:37:19 INFO  : Logs_Intermediates/LrCalculator/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529023722.log: Copied (new)
2026/05/29 18:37:19 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780022831375_292972.log: Copied (new)
2026/05/29 18:37:19 INFO  : Logs_Intermediates/Annotation/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:37:19 INFO  : Logs_Intermediates/Annotation/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529023508.log: Copied (new)
2026/05/29 18:37:19 INFO  : ica_logs/out/Logs_Intermediates/Gis/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780022238981_273829.log: Copied (new)
2026/05/29 18:37:19 INFO  : Logs_Intermediates/nextflow_work_logs/20/34155c9176c288fd9207433cef5411/.command.err: Copied (new)
2026/05/29 18:37:19 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:37:19 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:37:19 INFO  : Logs_Intermediates/nextflow_work_logs/20/34155c9176c288fd9207433cef5411/.command.log: Copied (new)
2026/05/29 18:37:19 INFO  : Logs_Intermediates/nextflow_work_logs/20/34155c9176c288fd9207433cef5411/.command.out: Copied (new)
2026/05/29 18:37:19 INFO  : ica_logs/out/Logs_Intermediates/Gis/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780022238974_273829.log: Copied (new)
2026/05/29 18:37:20 INFO  : Logs_Intermediates/nextflow_work_logs/20/34155c9176c288fd9207433cef5411/.command.run: Copied (new)
2026/05/29 18:37:20 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2d/83ce3b722e59b044a7467d8dd45d67/.command.begin: Copied (new)
2026/05/29 18:37:20 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2d/83ce3b722e59b044a7467d8dd45d67/.command.err: Copied (new)
2026/05/29 18:37:20 INFO  : Logs_Intermediates/nextflow_work_logs/20/34155c9176c288fd9207433cef5411/.command.sh: Copied (new)
2026/05/29 18:37:20 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2d/83ce3b722e59b044a7467d8dd45d67/.command.out: Copied (new)
2026/05/29 18:37:20 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2d/83ce3b722e59b044a7467d8dd45d67/.command.log: Copied (new)
2026/05/29 18:37:20 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2d/83ce3b722e59b044a7467d8dd45d67/.command.run: Copied (new)
2026/05/29 18:37:20 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2d/83ce3b722e59b044a7467d8dd45d67/.command.sh: Copied (new)
2026/05/29 18:37:20 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2d/83ce3b722e59b044a7467d8dd45d67/.command.trace: Copied (new)
2026/05/29 18:37:20 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2d/83ce3b722e59b044a7467d8dd45d67/.exitcode: Copied (new)
2026/05/29 18:37:20 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.bam.md5sum: Copied (new)
2026/05/29 18:37:20 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:37:20 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:37:20 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:37:20 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.gff3: Copied (new)
2026/05/29 18:37:20 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/05/29 18:37:20 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/05/29 18:37:20 INFO  : Logs_Intermediates/Annotation/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_Annotated.json.gz: Copied (new)
2026/05/29 18:37:20 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/05/29 18:37:20 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:37:20 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/05/29 18:37:20 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/05/29 18:37:20 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/05/29 18:37:20 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.exon_hist.csv: Copied (new)
2026/05/29 18:37:20 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/05/29 18:37:20 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.fastq_list.csv: Copied (new)
2026/05/29 18:37:20 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/05/29 18:37:20 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/05/29 18:37:20 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/05/29 18:37:20 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/05/29 18:37:21 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/05/29 18:37:21 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/05/29 18:37:21 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/05/29 18:37:21 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:37:21 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/05/29 18:37:21 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/05/29 18:37:21 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:37:21 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:37:21 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:37:21 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:37:21 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.insert-stats.tab: Copied (new)
2026/05/29 18:37:21 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/05/29 18:37:21 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/05/29 18:37:21 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_log.txt: Copied (new)
2026/05/29 18:37:21 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_output.json: Copied (new)
2026/05/29 18:37:21 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:37:21 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/05/29 18:37:21 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:37:21 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:37:21 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.pileup.txt: Copied (new)
2026/05/29 18:37:21 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:37:21 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:37:21 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:37:21 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:37:21 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:37:21 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.combined.counts.txt.gz: Copied (new)
2026/05/29 18:37:21 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:37:21 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:37:21 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.bam.bai: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:37:22 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/23/aad1e3591392bf9992c6de3a83c138/SampleAnalysisResults/1267_FC-T1-TDNA-1_HLNMCDRX7_1_SARJeantLog-20260529033106.log: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions.txt: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
2026/05/29 18:37:22 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780017072122_92334.log: Copied (new)
2026/05/29 18:37:23 INFO  : Logs_Intermediates/Tmb/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:37:23 INFO  : Logs_Intermediates/Tmb/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:37:23 INFO  : Logs_Intermediates/Tmb/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.tmb.metrics.csv: Copied (new)
2026/05/29 18:37:23 INFO  : Logs_Intermediates/Tmb/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:37:23 INFO  : Logs_Intermediates/Tmb/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:37:23 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780017072137_92334.log: Copied (new)
2026/05/29 18:37:23 INFO  : Logs_Intermediates/Tmb/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:37:23 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:37:23 INFO  : Logs_Intermediates/Tmb/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:37:23 INFO  : Logs_Intermediates/Tmb/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780023433458_316841.log: Copied (new)
2026/05/29 18:37:23 INFO  : Logs_Intermediates/Tmb/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780023433450_316841.log: Copied (new)
2026/05/29 18:37:23 INFO  : Logs_Intermediates/Tmb/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529014747.log: Copied (new)
2026/05/29 18:37:23 INFO  : Logs_Intermediates/Gis/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.abcn_genes.tsv: Copied (new)
2026/05/29 18:37:23 INFO  : Logs_Intermediates/Gis/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:37:23 INFO  : Logs_Intermediates/Gis/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.baf.bedgraph.gz.gzi: Copied (new)
2026/05/29 18:37:23 INFO  : Logs_Intermediates/Gis/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.abcn_annotated.vcf: Copied (new)
2026/05/29 18:37:23 INFO  : Logs_Intermediates/Tmb/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.tmb.trace.tsv: Copied (new)
2026/05/29 18:37:23 INFO  : Logs_Intermediates/Gis/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.gis.json: Copied (new)
2026/05/29 18:37:23 INFO  : Logs_Intermediates/Gis/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:37:23 INFO  : Logs_Intermediates/Gis/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.baf.bedgraph.gz: Copied (new)
2026/05/29 18:37:23 INFO  : Logs_Intermediates/FastqGeneration/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna_S18_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:37:23 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529025311.log: Copied (new)
2026/05/29 18:37:23 INFO  : Logs_Intermediates/Gis/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780020979646_237243.log: Copied (new)
2026/05/29 18:37:23 INFO  : Logs_Intermediates/Gis/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna_bAllele.tsv: Copied (new)
2026/05/29 18:37:23 INFO  : Logs_Intermediates/Gis/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780020979639_237243.log: Copied (new)
2026/05/29 18:37:23 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:37:23 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:37:23 INFO  : Logs_Intermediates/Gis/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna_raw.tsv: Copied (new)
2026/05/29 18:37:23 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:37:23 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/35/ed9e849731a1fb3e655c145094047a/.command.begin: Copied (new)
2026/05/29 18:37:23 INFO  : Logs_Intermediates/Gis/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna_logRatio.original.tsv: Copied (new)
2026/05/29 18:37:23 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/35/ed9e849731a1fb3e655c145094047a/.command.err: Copied (new)
2026/05/29 18:37:23 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780016881476_84053.log: Copied (new)
2026/05/29 18:37:23 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/35/ed9e849731a1fb3e655c145094047a/.command.log: Copied (new)
2026/05/29 18:37:23 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/35/ed9e849731a1fb3e655c145094047a/.command.env: Copied (new)
2026/05/29 18:37:23 INFO  : Logs_Intermediates/Gis/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna_logRatio.tsv: Copied (new)
2026/05/29 18:37:23 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/35/ed9e849731a1fb3e655c145094047a/.command.out: Copied (new)
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2026/05/29 18:37:23 INFO  : Logs_Intermediates/Tmb/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz: Copied (new)
2026/05/29 18:37:23 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/35/ed9e849731a1fb3e655c145094047a/.exitcode: Copied (new)
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2026/05/29 18:37:23 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/32/baa2d34ee5fac2d6274509d01239a7/.command.begin: Copied (new)
2026/05/29 18:37:23 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/32/baa2d34ee5fac2d6274509d01239a7/.command.err: Copied (new)
2026/05/29 18:37:23 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/32/baa2d34ee5fac2d6274509d01239a7/.command.log: Copied (new)
2026/05/29 18:37:24 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/32/baa2d34ee5fac2d6274509d01239a7/.command.out: Copied (new)
2026/05/29 18:37:24 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/32/baa2d34ee5fac2d6274509d01239a7/.command.run: Copied (new)
2026/05/29 18:37:24 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/32/baa2d34ee5fac2d6274509d01239a7/.command.sh: Copied (new)
2026/05/29 18:37:24 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/32/baa2d34ee5fac2d6274509d01239a7/.command.trace: Copied (new)
2026/05/29 18:37:24 INFO  : Logs_Intermediates/DnaCoverageReports/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.gene_cov_report.tsv: Copied (new)
2026/05/29 18:37:24 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/32/baa2d34ee5fac2d6274509d01239a7/.exitcode: Copied (new)
2026/05/29 18:37:24 INFO  : Logs_Intermediates/DnaCoverageReports/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/05/29 18:37:24 INFO  : Logs_Intermediates/DnaCoverageReports/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.exon_cov_report.tsv: Copied (new)
2026/05/29 18:37:24 INFO  : Logs_Intermediates/LrAnnotation/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna_DNAExonCNV_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:37:24 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529013655.log: Copied (new)
2026/05/29 18:37:24 INFO  : Logs_Intermediates/LrAnnotation/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna_DNAExonCNV_Annotated.json.gz: Copied (new)
2026/05/29 18:37:24 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780016881492_84053.log: Copied (new)
2026/05/29 18:37:24 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780023188987_312098.log: Copied (new)
2026/05/29 18:37:24 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780023188994_312098.log: Copied (new)
2026/05/29 18:37:24 INFO  : Logs_Intermediates/LrAnnotation/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529025722.log: Copied (new)
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2026/05/29 18:37:24 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780022792096_272923.log: Copied (new)
2026/05/29 18:37:24 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529025313.log: Copied (new)
2026/05/29 18:37:24 INFO  : ica_logs/out/Logs_Intermediates/Annotation/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529025646.log: Copied (new)
2026/05/29 18:37:24 INFO  : Logs_Intermediates/MetricsOutput/1267_Q-T1-TDNA-1_HLNMCDRX7_1/1267_Q-T1-TDNA-1_HLNMCDRX7_1_MetricsOutput.tsv: Copied (new)
2026/05/29 18:37:24 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780022792088_272923.log: Copied (new)
2026/05/29 18:37:24 INFO  : Logs_Intermediates/CombinedVariantOutput/659_Em-T1-TDNA-1_HLNMCDRX7_1/659_Em-T1-TDNA-1_HLNMCDRX7_1_CombinedVariantOutput.tsv: Copied (new)
2026/05/29 18:37:24 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529025720.log: Copied (new)
2026/05/29 18:37:24 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2a/913dafec84574a4274b656f0f9a225/DnaDragenCaller/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:37:24 INFO  : ica_logs/out/Logs_Intermediates/Contamination/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529031017.log: Copied (new)
2026/05/29 18:37:24 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2a/913dafec84574a4274b656f0f9a225/DnaDragenCaller/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:37:24 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2a/913dafec84574a4274b656f0f9a225/DnaDragenCaller/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:37:24 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/20/34155c9176c288fd9207433cef5411/.command.begin: Copied (new)
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2026/05/29 18:37:24 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/20/34155c9176c288fd9207433cef5411/.command.err: Copied (new)
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2026/05/29 18:37:24 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2a/913dafec84574a4274b656f0f9a225/DnaDragenCaller/dragen_syslog_1780015919688_61363.log: Copied (new)
2026/05/29 18:37:24 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/20/34155c9176c288fd9207433cef5411/.command.log: Copied (new)
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2026/05/29 18:37:24 INFO  : Logs_Intermediates/Tmb/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz: Copied (new)
2026/05/29 18:37:25 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/20/34155c9176c288fd9207433cef5411/.command.run: Copied (new)
2026/05/29 18:37:25 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/20/34155c9176c288fd9207433cef5411/.command.sh: Copied (new)
2026/05/29 18:37:25 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/20/34155c9176c288fd9207433cef5411/.exitcode: Copied (new)
2026/05/29 18:37:25 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/20/34155c9176c288fd9207433cef5411/.command.trace: Copied (new)
2026/05/29 18:37:25 INFO  : Logs_Intermediates/Contamination/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna_contamination.json: Copied (new)
2026/05/29 18:37:25 INFO  : Logs_Intermediates/Contamination/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529025046.log: Copied (new)
2026/05/29 18:37:25 INFO  : Logs_Intermediates/nextflow_work_logs/20/feb886dc19ef76c86185fabfaa1ca9/.command.log: Copied (new)
2026/05/29 18:37:25 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2a/913dafec84574a4274b656f0f9a225/DnaDragenCaller/dragen_run_1780015919704_61363.log: Copied (new)
2026/05/29 18:37:25 INFO  : Logs_Intermediates/nextflow_work_logs/20/feb886dc19ef76c86185fabfaa1ca9/.command.err: Copied (new)
2026/05/29 18:37:25 INFO  : Logs_Intermediates/nextflow_work_logs/20/feb886dc19ef76c86185fabfaa1ca9/.command.out: Copied (new)
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2026/05/29 18:37:25 INFO  : Logs_Intermediates/nextflow_work_logs/20/feb886dc19ef76c86185fabfaa1ca9/.command.run: Copied (new)
2026/05/29 18:37:25 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2e/9a666cde65a2b577f031adfbf39b79/.command.begin: Copied (new)
2026/05/29 18:37:25 INFO  : Logs_Intermediates/nextflow_work_logs/20/feb886dc19ef76c86185fabfaa1ca9/.command.sh: Copied (new)
2026/05/29 18:37:25 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2e/9a666cde65a2b577f031adfbf39b79/.command.err: Copied (new)
2026/05/29 18:37:25 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2e/9a666cde65a2b577f031adfbf39b79/.command.log: Copied (new)
2026/05/29 18:37:25 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/27/923950db8330633c585af3e8c22c11/Tmb/dragen_syslog_1780024303310_324158.log: Copied (new)
2026/05/29 18:37:25 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2e/9a666cde65a2b577f031adfbf39b79/.command.out: Copied (new)
2026/05/29 18:37:25 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2e/9a666cde65a2b577f031adfbf39b79/.command.sh: Copied (new)
2026/05/29 18:37:25 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2e/9a666cde65a2b577f031adfbf39b79/.exitcode: Copied (new)
2026/05/29 18:37:25 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:37:25 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2e/9a666cde65a2b577f031adfbf39b79/.command.run: Copied (new)
2026/05/29 18:37:25 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2e/9a666cde65a2b577f031adfbf39b79/.command.trace: Copied (new)
2026/05/29 18:37:25 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:37:25 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:37:25 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:37:25 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:37:25 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:37:25 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:37:25 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:37:25 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:37:25 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:37:25 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:37:25 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:37:25 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:37:26 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780021161470_242568.log: Copied (new)
2026/05/29 18:37:26 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/05/29 18:37:26 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/05/29 18:37:26 INFO  : ica_logs/out/Logs_Intermediates/Gis/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780023149231_287080.log: Copied (new)
2026/05/29 18:37:26 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780021161461_242568.log: Copied (new)
2026/05/29 18:37:26 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:37:26 INFO  : ica_logs/out/Logs_Intermediates/Gis/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780023149224_287080.log: Copied (new)
2026/05/29 18:37:26 INFO  : Logs_Intermediates/LrCalculator/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529023721.log: Copied (new)
2026/05/29 18:37:26 INFO  : Logs_Intermediates/LrCalculator/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
2026/05/29 18:37:26 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/37/187e79092e25db889bf20df99fb87c/.command.begin: Copied (new)
2026/05/29 18:37:26 INFO  : ica_logs/out/Logs_Intermediates/Annotation/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529030900.log: Copied (new)
2026/05/29 18:37:26 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/37/187e79092e25db889bf20df99fb87c/.command.err: Copied (new)
2026/05/29 18:37:26 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/37/187e79092e25db889bf20df99fb87c/.command.run: Copied (new)
2026/05/29 18:37:26 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/37/187e79092e25db889bf20df99fb87c/.command.trace: Copied (new)
2026/05/29 18:37:26 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/37/187e79092e25db889bf20df99fb87c/.command.sh: Copied (new)
2026/05/29 18:37:26 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/37/187e79092e25db889bf20df99fb87c/.exitcode: Copied (new)
2026/05/29 18:37:26 INFO  : Logs_Intermediates/FastqGeneration/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna_S18_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:37:26 INFO  : Logs_Intermediates/nextflow_work_logs/21/aee620a48680de6d0ebb19b487b2ab/.command.err: Copied (new)
2026/05/29 18:37:26 INFO  : Logs_Intermediates/nextflow_work_logs/21/aee620a48680de6d0ebb19b487b2ab/.command.out: Copied (new)
2026/05/29 18:37:26 INFO  : Logs_Intermediates/nextflow_work_logs/21/aee620a48680de6d0ebb19b487b2ab/.command.log: Copied (new)
2026/05/29 18:37:26 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/23/960f909c5364724f3d41454add962e/.command.begin: Copied (new)
2026/05/29 18:37:26 INFO  : Logs_Intermediates/nextflow_work_logs/21/aee620a48680de6d0ebb19b487b2ab/.command.sh: Copied (new)
2026/05/29 18:37:26 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/23/960f909c5364724f3d41454add962e/.command.err: Copied (new)
2026/05/29 18:37:26 INFO  : Logs_Intermediates/nextflow_work_logs/21/aee620a48680de6d0ebb19b487b2ab/.command.run: Copied (new)
2026/05/29 18:37:26 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/23/960f909c5364724f3d41454add962e/.command.log: Copied (new)
2026/05/29 18:37:26 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/23/960f909c5364724f3d41454add962e/.command.out: Copied (new)
2026/05/29 18:37:26 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/23/960f909c5364724f3d41454add962e/.command.run: Copied (new)
2026/05/29 18:37:26 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/23/960f909c5364724f3d41454add962e/.command.trace: Copied (new)
2026/05/29 18:37:26 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/23/960f909c5364724f3d41454add962e/.exitcode: Copied (new)
2026/05/29 18:37:26 INFO  : Logs_Intermediates/FastqGeneration/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna_S20_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:37:26 INFO  : ica_logs/out/Logs_Intermediates/Gis/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780020929551_232766.log: Copied (new)
2026/05/29 18:37:27 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/23/960f909c5364724f3d41454add962e/.command.sh: Copied (new)
2026/05/29 18:37:27 INFO  : ica_logs/out/Logs_Intermediates/Gis/1029_VYX-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780020929545_232766.log: Copied (new)
2026/05/29 18:37:27 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.bam.md5sum: Copied (new)
2026/05/29 18:37:27 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:37:27 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:37:27 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.gff3: Copied (new)
2026/05/29 18:37:27 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/05/29 18:37:27 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:37:27 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/05/29 18:37:27 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/05/29 18:37:27 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:37:27 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/05/29 18:37:27 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/05/29 18:37:27 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.exon_hist.csv: Copied (new)
2026/05/29 18:37:27 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/05/29 18:37:27 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/05/29 18:37:27 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/05/29 18:37:27 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.bam.bai: Copied (new)
2026/05/29 18:37:27 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.fastq_list.csv: Copied (new)
2026/05/29 18:37:27 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:37:27 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/05/29 18:37:27 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/05/29 18:37:27 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/05/29 18:37:27 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.combined.counts.txt.gz: Copied (new)
2026/05/29 18:37:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/05/29 18:37:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/05/29 18:37:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/05/29 18:37:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/05/29 18:37:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:37:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/05/29 18:37:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:37:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:37:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:37:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.insert-stats.tab: Copied (new)
2026/05/29 18:37:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/05/29 18:37:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/05/29 18:37:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_log.txt: Copied (new)
2026/05/29 18:37:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_output.json: Copied (new)
2026/05/29 18:37:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/05/29 18:37:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:37:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:37:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:37:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:37:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.pileup.txt: Copied (new)
2026/05/29 18:37:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:37:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:37:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:37:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:37:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:37:28 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:37:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:37:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/05/29 18:37:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/05/29 18:37:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/05/29 18:37:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:37:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/05/29 18:37:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/05/29 18:37:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/05/29 18:37:29 INFO  : 
Transferred:   	  214.184 GiB / 383.136 GiB, 56%, 1.427 GiB/s, ETA 1m58s
Transferred:         6046 / 14458, 42%
Elapsed time:      2m30.0s
Transferring:
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 82% /4.486Gi, 29.105Mi/s, 27s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 92% /4.157Gi, 33.053Mi/s, 9s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 96% /3.803Gi, 26.673Mi/s, 4s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 98% /3.751Gi, 28.237Mi/s, 2s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 81% /4.148Gi, 26.880Mi/s, 29s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 72% /4.633Gi, 28.505Mi/s, 46s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 66% /4.466Gi, 29.018Mi/s, 52s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 66% /4.678Gi, 20.692Mi/s, 1m18s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 60% /4.499Gi, 24.619Mi/s, 1m14s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 65% /4.415Gi, 29.550Mi/s, 53s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 42% /5.954Gi, 27.925Mi/s, 2m5s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 46% /4.890Gi, 26.453Mi/s, 1m42s
 * Logs_Intermediates/Fas…6_L001_R1_001.fastq.gz: 64% /3.727Gi, 26.833Mi/s, 50s
 * Logs_Intermediates/Fas…6_L001_R2_001.fastq.gz: 56% /3.787Gi, 22.189Mi/s, 1m15s
 * Logs_Intermediates/Fas…6_L002_R1_001.fastq.gz: 60% /3.640Gi, 23.213Mi/s, 1m3s
 * Logs_Intermediates/Fas…6_L002_R2_001.fastq.gz: 62% /3.699Gi, 27.195Mi/s, 52s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 21% /8.846Gi, 29.822Mi/s, 3m57s
 * Logs_Intermediates/Fas…8_L001_R2_001.fastq.gz: 92% /1.553Gi, 28.730Mi/s, 4s
 * Logs_Intermediates/Fas…8_L002_R2_001.fastq.gz: 92% /1.490Gi, 17.981Mi/s, 6s
 * Logs_Intermediates/Fas…0_L001_R1_001.fastq.gz: 97% /1.484Gi, 25.605Mi/s, 1s
 * Logs_Intermediates/Fas…0_L001_R2_001.fastq.gz: 95% /1.531Gi, 29.816Mi/s, 2s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 38% /4.210Gi, 32.726Mi/s, 1m20s
 * Logs_Intermediates/Fas…9_L001_R1_001.fastq.gz: 87% /1.600Gi, 25.090Mi/s, 7s
 * Logs_Intermediates/Fas…9_L001_R2_001.fastq.gz: 88% /1.655Gi, 29.361Mi/s, 6s
 * Logs_Intermediates/Fas…9_L002_R1_001.fastq.gz: 71% /1.565Gi, 21.129Mi/s, 21s
 * Logs_Intermediates/Fas…9_L002_R2_001.fastq.gz: 79% /1.620Gi, 21.701Mi/s, 15s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 40% /4.068Gi, 34.814Mi/s, 1m10s
 * Logs_Intermediates/Fas…3_L001_R1_001.fastq.gz: 97% /1.061Gi, 20.663Mi/s, 1s
 * Logs_Intermediates/Fas…3_L001_R2_001.fastq.gz: 97% /1.091Gi, 19.673Mi/s, 1s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 25% /4.417Gi, 23.244Mi/s, 2m25s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 35% /3.346Gi, 27.919Mi/s, 1m19s
 * Logs_Intermediates/Fas…1_L001_R1_001.fastq.gz: 85% /1.320Gi, 32.710Mi/s, 6s
 * Logs_Intermediates/Fas…1_L001_R2_001.fastq.gz: 63% /1.368Gi, 21.156Mi/s, 23s
 * Logs_Intermediates/Fas…1_L002_R1_001.fastq.gz: 79% /1.258Gi, 27.074Mi/s, 9s
 * Logs_Intermediates/Fas…1_L002_R2_001.fastq.gz: 62% /1.306Gi, 22.298Mi/s, 22s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 24% /3.864Gi, 25.550Mi/s, 1m56s
 * Logs_Intermediates/Fas…5_L001_R1_001.fastq.gz: 15% /4.295Gi, 22.497Mi/s, 2m45s
 * Logs_Intermediates/Fas…5_L001_R2_001.fastq.gz: 22% /4.458Gi, 30.251Mi/s, 1m57s
 * Logs_Intermediates/Fas…5_L002_R1_001.fastq.gz: 20% /4.151Gi, 24.933Mi/s, 2m16s
 * Logs_Intermediates/Fas…5_L002_R2_001.fastq.gz: 22% /4.316Gi, 28.607Mi/s, 1m59s
 * Logs_Intermediates/Fas…9_L001_R1_001.fastq.gz: 31% /1.665Gi, 22.971Mi/s, 50s
 * Logs_Intermediates/Fas…9_L001_R2_001.fastq.gz: 38% /1.717Gi, 31.903Mi/s, 34s
 * Logs_Intermediates/Fas…9_L002_R1_001.fastq.gz: 42% /1.623Gi, 30.912Mi/s, 30s
 * Logs_Intermediates/Fas…9_L002_R2_001.fastq.gz: 20% /1.676Gi, 15.145Mi/s, 1m30s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam:  5% /11.062Gi, 27.117Mi/s, 6m36s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam:  9% /4.656Gi, 29.714Mi/s, 2m25s
 * Logs_Intermediates/Fas…4_L001_R1_001.fastq.gz: 21% /1.593Gi, 32.000Mi/s, 39s
 * Logs_Intermediates/Fas…4_L001_R2_001.fastq.gz: 19% /1.651Gi, 23.273Mi/s, 58s
 * Logs_Intermediates/Fas…4_L002_R1_001.fastq.gz: 22% /1.541Gi, 32.000Mi/s, 38s
 * Logs_Intermediates/Fas…4_L002_R2_001.fastq.gz: 21% /1.600Gi, 26.864Mi/s, 47s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam:  4% /4.686Gi, 21.333Mi/s, 3m35s
 * Logs_Intermediates/Fas…2_L001_R1_001.fastq.gz: 12% /1.530Gi, 36.719Mi/s, 37s
 * Logs_Intermediates/Fas…2_L001_R2_001.fastq.gz:  8% /1.443Gi, 25.600Mi/s, 52s
 * Logs_Intermediates/Fas…2_L002_R1_001.fastq.gz:  6% /1.457Gi, 19.200Mi/s, 1m12s
 * Logs_Intermediates/Fas…2_L002_R2_001.fastq.gz:  6% /1.372Gi, 19.200Mi/s, 1m8s
 * ica_logs/work/c6/f7cdd…df99fb87c/.command.log: 96% /61.131Mi, 21.998Mi/s, 0s
 * ica_logs/work/c6/f7cdd…df99fb87c/.command.out: 88% /61.131Mi, 19.998Mi/s, 0s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam:  1% /4.249Gi, 32.000Mi/s, 2m13s
 * Logs_Intermediates/Dna….hard-filtered.gvcf.gz: 32% /18.230Mi, 4.996Mi/s, 2s
 * Logs_Intermediates/Dna…ed_read_cov_report.bed: transferring
 * Logs_Intermediates/Dna…c_callable_regions.bed:100% /220.639Ki, 0/s, -
 * Logs_Intermediates/Dna…1_dna.time_metrics.csv: transferring
 * Logs_Intermediates/Dna…na.tmb_callability.bed: transferring
 * Logs_Intermediates/Dna…mb_contig_mean_cov.csv: transferring

2026/05/29 18:37:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:37:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:37:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/05/29 18:37:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/05/29 18:37:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/05/29 18:37:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/05/29 18:37:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/05/29 18:37:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/05/29 18:37:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/05/29 18:37:29 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/37/187e79092e25db889bf20df99fb87c/.command.log: Copied (new)
2026/05/29 18:37:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:37:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:37:29 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/37/187e79092e25db889bf20df99fb87c/.command.out: Copied (new)
2026/05/29 18:37:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:37:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/05/29 18:37:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/05/29 18:37:29 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions.txt: Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/Gis/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/Gis/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.abcn_annotated.vcf: Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/Gis/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.abcn_genes.tsv: Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780018765734_139865.log: Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/DnaDragenCaller/1029_JAD-T1-TDNA-1_HLNMCDRX7_1_dna/1029_JAD-T1-TDNA-1_HLNMCDRX7_1_dna.bam: Multi-thread Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/Gis/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.baf.bedgraph.gz: Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/Gis/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.baf.bedgraph.gz.gzi: Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780018765717_139865.log: Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/Gis/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/Gis/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.gis.json: Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/Gis/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780021700354_262047.log: Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/Gis/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780021700347_262047.log: Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/DnaCoverageReports/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.exon_cov_report.tsv: Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/Gis/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna_bAllele.tsv: Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/DnaCoverageReports/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.gene_cov_report.tsv: Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/DnaCoverageReports/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/Tmb/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/Tmb/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/Tmb/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/Tmb/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/Gis/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna_logRatio.original.tsv: Copied (new)
2026/05/29 18:37:30 INFO  : Logs_Intermediates/Tmb/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.tmb.metrics.csv: Copied (new)
2026/05/29 18:37:31 INFO  : Logs_Intermediates/Tmb/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:37:31 INFO  : Logs_Intermediates/Tmb/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:37:31 INFO  : Logs_Intermediates/Tmb/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529012307.log: Copied (new)
2026/05/29 18:37:31 INFO  : Logs_Intermediates/Tmb/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780022166660_281533.log: Copied (new)
2026/05/29 18:37:31 INFO  : Logs_Intermediates/Tmb/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.tmb.trace.tsv: Copied (new)
2026/05/29 18:37:31 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/1e/f6e49180b922dc529879c862573bae/Contamination/Spoiler-20260529025043.log: Copied (new)
2026/05/29 18:37:31 INFO  : Logs_Intermediates/Tmb/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780022166653_281533.log: Copied (new)
2026/05/29 18:37:31 INFO  : Logs_Intermediates/Gis/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna_logRatio.tsv: Copied (new)
2026/05/29 18:37:31 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:37:31 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:37:31 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:37:31 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780015440793_46395.log: Copied (new)
2026/05/29 18:37:31 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780015440777_46395.log: Copied (new)
2026/05/29 18:37:31 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529025720.log: Copied (new)
2026/05/29 18:37:31 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
2026/05/29 18:37:31 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780022125738_252192.log: Copied (new)
2026/05/29 18:37:31 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna.bam: Multi-thread Copied (new)
2026/05/29 18:37:31 INFO  : ica_logs/out/Logs_Intermediates/DnaCoverageReports/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/05/29 18:37:31 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/35/cc86cdfa62d3e3636de20f51ea6387/.command.begin: Copied (new)
2026/05/29 18:37:31 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/35/cc86cdfa62d3e3636de20f51ea6387/.command.err: Copied (new)
2026/05/29 18:37:31 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/35/cc86cdfa62d3e3636de20f51ea6387/.command.log: Copied (new)
2026/05/29 18:37:31 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780022125729_252192.log: Copied (new)
2026/05/29 18:37:31 INFO  : Logs_Intermediates/FastqGeneration/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna_S23_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:37:31 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/35/cc86cdfa62d3e3636de20f51ea6387/.command.out: Copied (new)
2026/05/29 18:37:32 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/35/cc86cdfa62d3e3636de20f51ea6387/.command.run: Copied (new)
2026/05/29 18:37:32 INFO  : Logs_Intermediates/Gis/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna_raw.tsv: Copied (new)
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2026/05/29 18:37:32 INFO  : Logs_Intermediates/CombinedVariantOutput/659_eNS-T1-TDNA-1_HLNMCDRX7_1/659_eNS-T1-TDNA-1_HLNMCDRX7_1_CombinedVariantOutput.tsv: Copied (new)
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2026/05/29 18:37:33 INFO  : Logs_Intermediates/nextflow_work_logs/22/3c4d7e23da3f0f191f8732e7e6f7e8/.command.out: Copied (new)
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2026/05/29 18:37:33 INFO  : Logs_Intermediates/nextflow_work_logs/21/de4456c4b834a20bda7fcc6b5c9423/.command.err: Copied (new)
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2026/05/29 18:37:34 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780020820032_230734.log: Copied (new)
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2026/05/29 18:37:34 INFO  : Logs_Intermediates/LrCalculator/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
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2026/05/29 18:37:34 INFO  : Logs_Intermediates/Gis/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:37:34 INFO  : Logs_Intermediates/Gis/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.abcn_annotated.vcf: Copied (new)
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2026/05/29 18:37:34 INFO  : Logs_Intermediates/Gis/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.abcn_genes.tsv: Copied (new)
2026/05/29 18:37:34 INFO  : Logs_Intermediates/Gis/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.gis.json: Copied (new)
2026/05/29 18:37:34 INFO  : Logs_Intermediates/Gis/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:37:34 INFO  : Logs_Intermediates/Gis/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.baf.bedgraph.gz: Copied (new)
2026/05/29 18:37:34 INFO  : Logs_Intermediates/FastqGeneration/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna_S20_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:37:34 INFO  : Logs_Intermediates/FastqGeneration/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna_S23_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:37:34 INFO  : Logs_Intermediates/Tmb/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:37:34 INFO  : Logs_Intermediates/Gis/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780020685254_226497.log: Copied (new)
2026/05/29 18:37:34 INFO  : Logs_Intermediates/Tmb/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/Gis/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780020685261_226497.log: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/Gis/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna_bAllele.tsv: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/Tmb/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/Tmb/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/Tmb/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/Tmb/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.tmb.metrics.csv: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/Gis/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna_logRatio.original.tsv: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/Gis/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna_logRatio.tsv: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/Tmb/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/Gis/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna_raw.tsv: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/Tmb/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529011419.log: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/Tmb/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780022138294_280034.log: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/Tmb/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.tmb.trace.tsv: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/Tmb/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780022138286_280034.log: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.bam.md5sum: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/FastqGeneration/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna_S29_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.gff3: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/FastqGeneration/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna_S18_L002_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.exon_hist.csv: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.fastq_list.csv: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/Tmb/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.bam.bai: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/05/29 18:37:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_output.json: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_log.txt: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.insert-stats.tab: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.pileup.txt: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
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2026/05/29 18:37:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/05/29 18:37:37 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:37:37 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/05/29 18:37:37 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/05/29 18:37:37 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:37:37 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:37:37 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/05/29 18:37:37 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/05/29 18:37:37 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/05/29 18:37:37 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/05/29 18:37:37 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/05/29 18:37:37 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/05/29 18:37:37 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/05/29 18:37:37 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/3a/f9fed7f61275709dd5b7bb460272b2/.command.begin: Copied (new)
2026/05/29 18:37:37 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/3a/f9fed7f61275709dd5b7bb460272b2/.command.err: Copied (new)
2026/05/29 18:37:37 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780017305168_101685.log: Copied (new)
2026/05/29 18:37:37 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780017305184_101685.log: Copied (new)
2026/05/29 18:37:37 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/3a/f9fed7f61275709dd5b7bb460272b2/.command.run: Copied (new)
2026/05/29 18:37:37 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:37:37 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/25/1c6afdd4076cd76855eac0c592b4b0/.command.begin: Copied (new)
2026/05/29 18:37:37 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/3a/f9fed7f61275709dd5b7bb460272b2/.command.sh: Copied (new)
2026/05/29 18:37:37 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/3a/f9fed7f61275709dd5b7bb460272b2/.command.trace: Copied (new)
2026/05/29 18:37:37 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/3a/f9fed7f61275709dd5b7bb460272b2/.exitcode: Copied (new)
2026/05/29 18:37:37 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions.txt: Copied (new)
2026/05/29 18:37:37 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/25/1c6afdd4076cd76855eac0c592b4b0/.command.err: Copied (new)
2026/05/29 18:37:37 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/25/1c6afdd4076cd76855eac0c592b4b0/.command.log: Copied (new)
2026/05/29 18:37:37 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/3a/f9fed7f61275709dd5b7bb460272b2/.command.out: Copied (new)
2026/05/29 18:37:37 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/25/1c6afdd4076cd76855eac0c592b4b0/.command.out: Copied (new)
2026/05/29 18:37:37 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/3a/f9fed7f61275709dd5b7bb460272b2/.command.log: Copied (new)
2026/05/29 18:37:37 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/25/1c6afdd4076cd76855eac0c592b4b0/.exitcode: Copied (new)
2026/05/29 18:37:37 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/25/1c6afdd4076cd76855eac0c592b4b0/.command.run: Copied (new)
2026/05/29 18:37:37 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/25/1c6afdd4076cd76855eac0c592b4b0/.command.sh: Copied (new)
2026/05/29 18:37:37 INFO  : Logs_Intermediates/DnaCoverageReports/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.gene_cov_report.tsv: Copied (new)
2026/05/29 18:37:37 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/25/1c6afdd4076cd76855eac0c592b4b0/.command.trace: Copied (new)
2026/05/29 18:37:37 INFO  : Logs_Intermediates/DnaCoverageReports/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/05/29 18:37:37 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529012726.log: Copied (new)
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2026/05/29 18:37:37 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780023131030_309180.log: Copied (new)
2026/05/29 18:37:37 INFO  : Logs_Intermediates/DnaCoverageReports/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.exon_cov_report.tsv: Copied (new)
2026/05/29 18:37:37 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780023131023_309180.log: Copied (new)
2026/05/29 18:37:37 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:37:37 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/2f/d7f75941b2fa1933f3da7c8b044c12/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:37:37 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:37:37 INFO  : ica_logs/out/Logs_Intermediates/DnaCoverageReports/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/05/29 18:37:37 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:37:37 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/2f/d7f75941b2fa1933f3da7c8b044c12/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:37:38 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780017463549_100360.log: Copied (new)
2026/05/29 18:37:38 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/2f/d7f75941b2fa1933f3da7c8b044c12/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:37:38 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1267_B1-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780017463533_100360.log: Copied (new)
2026/05/29 18:37:38 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2d/83ce3b722e59b044a7467d8dd45d67/Tmb/dragen_run_1780023161292_310679.log: Copied (new)
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2026/05/29 18:37:38 INFO  : Logs_Intermediates/LrAnnotation/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna_DNAExonCNV_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:37:38 INFO  : Logs_Intermediates/LrAnnotation/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna_DNAExonCNV_Annotated.json.gz: Copied (new)
2026/05/29 18:37:38 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529031225.log: Copied (new)
2026/05/29 18:37:38 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/2f/d7f75941b2fa1933f3da7c8b044c12/DnaDragenCaller/dragen_syslog_1780015440777_46395.log: Copied (new)
2026/05/29 18:37:38 INFO  : Logs_Intermediates/LrAnnotation/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529023721.log: Copied (new)
2026/05/29 18:37:38 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780021496768_230615.log: Copied (new)
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2026/05/29 18:37:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
2026/05/29 18:37:38 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2c/dc6650b5ac60705a3a6a6c0b0f69b1/Contamination/Spoiler-20260529030618.log: Copied (new)
2026/05/29 18:37:38 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780021496760_230615.log: Copied (new)
2026/05/29 18:37:38 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/1047_MH-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529031223.log: Copied (new)
2026/05/29 18:37:38 INFO  : Logs_Intermediates/nextflow_work_logs/23/960f909c5364724f3d41454add962e/.command.err: Copied (new)
2026/05/29 18:37:38 INFO  : Logs_Intermediates/MetricsOutput/659_eNS-T1-TDNA-1_HLNMCDRX7_1/659_eNS-T1-TDNA-1_HLNMCDRX7_1_MetricsOutput.tsv: Copied (new)
2026/05/29 18:37:38 INFO  : Logs_Intermediates/nextflow_work_logs/23/960f909c5364724f3d41454add962e/.command.log: Copied (new)
2026/05/29 18:37:38 INFO  : Logs_Intermediates/CombinedVariantOutput/659_eRe-T1-TDNA-1_HLNMCDRX7_1/659_eRe-T1-TDNA-1_HLNMCDRX7_1_CombinedVariantOutput.tsv: Copied (new)
2026/05/29 18:37:38 INFO  : Logs_Intermediates/nextflow_work_logs/23/960f909c5364724f3d41454add962e/.command.run: Copied (new)
2026/05/29 18:37:38 INFO  : Logs_Intermediates/nextflow_work_logs/23/960f909c5364724f3d41454add962e/.command.out: Copied (new)
2026/05/29 18:37:38 INFO  : Logs_Intermediates/nextflow_work_logs/23/960f909c5364724f3d41454add962e/.command.sh: Copied (new)
2026/05/29 18:37:38 INFO  : Logs_Intermediates/FastqGeneration/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_dna_S20_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:37:38 INFO  : Logs_Intermediates/Contamination/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529025048.log: Copied (new)
2026/05/29 18:37:38 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:37:38 INFO  : Logs_Intermediates/Contamination/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna_contamination.json: Copied (new)
2026/05/29 18:37:38 INFO  : ica_logs/out/Logs_Intermediates/Contamination/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529032452.log: Copied (new)
2026/05/29 18:37:38 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:37:38 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:37:38 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:37:38 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:37:38 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:37:38 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:37:38 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:37:38 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:37:39 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:37:39 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:37:39 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:37:39 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/05/29 18:37:39 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:37:39 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:37:39 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.combined.counts.txt.gz: Copied (new)
2026/05/29 18:37:39 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/05/29 18:37:39 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780021524511_255010.log: Copied (new)
2026/05/29 18:37:39 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/01/0ec84ff8a3c71f48ae51e6bcae31a4/.command.err: Copied (new)
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2026/05/29 18:37:39 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780021524503_255010.log: Copied (new)
2026/05/29 18:37:39 INFO  : Logs_Intermediates/FastqGeneration/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna_S21_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:37:39 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/01/0ec84ff8a3c71f48ae51e6bcae31a4/.command.out: Copied (new)
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2026/05/29 18:37:39 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/00/ad6600d256742a6219ede6c87de4ed/.command.err: Copied (new)
2026/05/29 18:37:39 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/01/0ec84ff8a3c71f48ae51e6bcae31a4/.command.run: Copied (new)
2026/05/29 18:37:39 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/00/ad6600d256742a6219ede6c87de4ed/.command.out: Copied (new)
2026/05/29 18:37:39 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/00/ad6600d256742a6219ede6c87de4ed/.command.log: Copied (new)
2026/05/29 18:37:39 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/00/ad6600d256742a6219ede6c87de4ed/.command.run: Copied (new)
2026/05/29 18:37:39 INFO  : Logs_Intermediates/LrCalculator/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
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2026/05/29 18:37:39 INFO  : Logs_Intermediates/LrCalculator/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529023720.log: Copied (new)
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2026/05/29 18:37:39 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/00/ad6600d256742a6219ede6c87de4ed/.command.sh: Copied (new)
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2026/05/29 18:37:39 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/27/e828b8a085f6adfa3b390f0a895ae9/.exitcode: Copied (new)
2026/05/29 18:37:39 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/27/e828b8a085f6adfa3b390f0a895ae9/.command.run: Copied (new)
2026/05/29 18:37:39 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/34/1e9c51639f6e11c23d3e07c24f8b6c/.command.err: Copied (new)
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2026/05/29 18:37:39 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/34/1e9c51639f6e11c23d3e07c24f8b6c/.command.out: Copied (new)
2026/05/29 18:37:39 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/34/1e9c51639f6e11c23d3e07c24f8b6c/.exitcode: Copied (new)
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2026/05/29 18:37:39 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/34/1e9c51639f6e11c23d3e07c24f8b6c/.command.run: Copied (new)
2026/05/29 18:37:39 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/27/e828b8a085f6adfa3b390f0a895ae9/.command.sh: Copied (new)
2026/05/29 18:37:39 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/34/1e9c51639f6e11c23d3e07c24f8b6c/.command.trace: Copied (new)
2026/05/29 18:37:39 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/34/1e9c51639f6e11c23d3e07c24f8b6c/.command.sh: Copied (new)
2026/05/29 18:37:39 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/44/666a66622d54459eb3165936559402/.command.begin: Copied (new)
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2026/05/29 18:37:39 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/44/666a66622d54459eb3165936559402/.command.err: Copied (new)
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2026/05/29 18:37:39 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/44/666a66622d54459eb3165936559402/.exitcode: Copied (new)
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2026/05/29 18:37:40 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/44/666a66622d54459eb3165936559402/.command.trace: Copied (new)
2026/05/29 18:37:40 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/40/d566459a09a50c838976d882042d3c/.command.err: Copied (new)
2026/05/29 18:37:40 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/40/d566459a09a50c838976d882042d3c/.command.run: Copied (new)
2026/05/29 18:37:40 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/40/d566459a09a50c838976d882042d3c/.command.sh: Copied (new)
2026/05/29 18:37:40 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/40/d566459a09a50c838976d882042d3c/.command.trace: Copied (new)
2026/05/29 18:37:40 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/40/d566459a09a50c838976d882042d3c/.exitcode: Copied (new)
2026/05/29 18:37:40 INFO  : Logs_Intermediates/Gis/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.baf.bedgraph.gz: Copied (new)
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2026/05/29 18:37:40 INFO  : Logs_Intermediates/Gis/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:37:40 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/32/baa2d34ee5fac2d6274509d01239a7/Tmb/dragen_run_1780024271982_322578.log: Copied (new)
2026/05/29 18:37:40 INFO  : Logs_Intermediates/Gis/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.baf.bedgraph.gz.gzi: Copied (new)
2026/05/29 18:37:40 INFO  : Logs_Intermediates/Gis/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:37:40 INFO  : Logs_Intermediates/FastqGeneration/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna_S21_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:37:40 INFO  : Logs_Intermediates/Gis/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.gis.json: Copied (new)
2026/05/29 18:37:40 INFO  : Logs_Intermediates/Gis/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna_bAllele.tsv: Copied (new)
2026/05/29 18:37:40 INFO  : ica_logs/out/Logs_Intermediates/Annotation/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529025442.log: Copied (new)
2026/05/29 18:37:40 INFO  : Logs_Intermediates/Gis/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780021978398_272314.log: Copied (new)
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2026/05/29 18:37:40 INFO  : Logs_Intermediates/Gis/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780021978405_272314.log: Copied (new)
2026/05/29 18:37:40 INFO  : Logs_Intermediates/Tmb/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
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2026/05/29 18:37:40 INFO  : Logs_Intermediates/Tmb/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
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2026/05/29 18:37:41 INFO  : Logs_Intermediates/Tmb/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780022234526_284691.log: Copied (new)
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2026/05/29 18:37:41 INFO  : Logs_Intermediates/Tmb/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780022234518_284691.log: Copied (new)
2026/05/29 18:37:41 INFO  : Logs_Intermediates/Tmb/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529013234.log: Copied (new)
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2026/05/29 18:37:41 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/3d/111a084c111a4d9805736ca90acd2f/.command.out: Copied (new)
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2026/05/29 18:37:41 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/3d/111a084c111a4d9805736ca90acd2f/.command.sh: Copied (new)
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2026/05/29 18:37:41 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/3d/111a084c111a4d9805736ca90acd2f/.command.run: Copied (new)
2026/05/29 18:37:41 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/3d/111a084c111a4d9805736ca90acd2f/.exitcode: Copied (new)
2026/05/29 18:37:41 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/3d/111a084c111a4d9805736ca90acd2f/.command.trace: Copied (new)
2026/05/29 18:37:41 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.combined.counts.txt.gz: Copied (new)
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2026/05/29 18:37:41 INFO  : Logs_Intermediates/DnaCoverageReports/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/gen_coverage_reports.log: Copied (new)
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2026/05/29 18:37:41 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780015994600_61758.log: Copied (new)
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2026/05/29 18:37:42 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/26/22c288014a70fb0a85a1d575b5aa29/.command.begin: Copied (new)
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2026/05/29 18:37:42 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780023030463_304363.log: Copied (new)
2026/05/29 18:37:42 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/26/22c288014a70fb0a85a1d575b5aa29/.command.err: Copied (new)
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2026/05/29 18:37:42 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/26/22c288014a70fb0a85a1d575b5aa29/.command.run: Copied (new)
2026/05/29 18:37:42 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/26/22c288014a70fb0a85a1d575b5aa29/.exitcode: Copied (new)
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2026/05/29 18:37:42 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/26/22c288014a70fb0a85a1d575b5aa29/.command.trace: Copied (new)
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2026/05/29 18:37:42 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2e/9a666cde65a2b577f031adfbf39b79/Tmb/dragen_run_1780023096319_307521.log: Copied (new)
2026/05/29 18:37:42 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780021135091_234443.log: Copied (new)
2026/05/29 18:37:42 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780021135083_234443.log: Copied (new)
2026/05/29 18:37:42 INFO  : Logs_Intermediates/FastqGeneration/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna_S21_L002_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:37:42 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/2e/9a666cde65a2b577f031adfbf39b79/Tmb/dragen_syslog_1780023096311_307521.log: Copied (new)
2026/05/29 18:37:42 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/20/34155c9176c288fd9207433cef5411/LrCalculator/LrCalculator-20260529025721.log: Copied (new)
2026/05/29 18:37:42 INFO  : Logs_Intermediates/LrAnnotation/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna_DNAExonCNV_Annotated.json.gz: Copied (new)
2026/05/29 18:37:42 INFO  : Logs_Intermediates/LrAnnotation/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna_DNAExonCNV_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:37:42 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/1047_MH-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529031222.log: Copied (new)
2026/05/29 18:37:42 INFO  : Logs_Intermediates/LrAnnotation/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529023723.log: Copied (new)
2026/05/29 18:37:42 INFO  : Logs_Intermediates/FastqGeneration/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna_S29_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:37:42 INFO  : ica_logs/out/Logs_Intermediates/DnaCoverageReports/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/05/29 18:37:42 INFO  : Logs_Intermediates/CombinedVariantOutput/659_hv-T1-TDNA-1_HLNMCDRX7_1/659_hv-T1-TDNA-1_HLNMCDRX7_1_CombinedVariantOutput.tsv: Copied (new)
2026/05/29 18:37:42 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/02/3921450f1ddd4ca1fe7036bae782a0/.command.err: Copied (new)
2026/05/29 18:37:43 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/02/3921450f1ddd4ca1fe7036bae782a0/.command.log: Copied (new)
2026/05/29 18:37:43 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/02/3921450f1ddd4ca1fe7036bae782a0/.command.sh: Copied (new)
2026/05/29 18:37:43 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/02/3921450f1ddd4ca1fe7036bae782a0/.command.out: Copied (new)
2026/05/29 18:37:43 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/02/3921450f1ddd4ca1fe7036bae782a0/.command.run: Copied (new)
2026/05/29 18:37:43 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/23/960f909c5364724f3d41454add962e/LrCalculator/LrCalculator-20260529023720.log: Copied (new)
2026/05/29 18:37:43 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:37:43 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.bam.md5sum: Copied (new)
2026/05/29 18:37:43 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:37:43 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.bam.bai: Copied (new)
2026/05/29 18:37:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.gff3: Copied (new)
2026/05/29 18:37:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:37:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/05/29 18:37:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/05/29 18:37:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/05/29 18:37:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:37:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/05/29 18:37:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/05/29 18:37:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/05/29 18:37:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/05/29 18:37:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.exon_hist.csv: Copied (new)
2026/05/29 18:37:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/05/29 18:37:45 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/40/d566459a09a50c838976d882042d3c/.command.log: Copied (new)
2026/05/29 18:37:45 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:37:45 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.fastq_list.csv: Copied (new)
2026/05/29 18:37:45 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/05/29 18:37:45 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/40/d566459a09a50c838976d882042d3c/.command.out: Copied (new)
2026/05/29 18:37:45 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/05/29 18:37:45 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/05/29 18:37:45 INFO  : Logs_Intermediates/FastqGeneration/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna_S29_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:37:45 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/05/29 18:37:45 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/05/29 18:37:45 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/05/29 18:37:45 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/05/29 18:37:45 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/05/29 18:37:45 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:37:45 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:37:45 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:37:45 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/05/29 18:37:45 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.insert-stats.tab: Copied (new)
2026/05/29 18:37:45 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/05/29 18:37:45 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:37:46 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_log.txt: Copied (new)
2026/05/29 18:37:46 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_output.json: Copied (new)
2026/05/29 18:37:46 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/05/29 18:37:46 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:37:46 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:37:46 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:37:46 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:37:46 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.pileup.txt: Copied (new)
2026/05/29 18:37:46 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:37:46 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:37:46 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:37:46 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:37:46 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:37:46 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
2026/05/29 18:37:46 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:37:46 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:37:46 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:37:46 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/05/29 18:37:46 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/05/29 18:37:46 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/05/29 18:37:46 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/05/29 18:37:46 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/05/29 18:37:46 INFO  : Logs_Intermediates/FastqGeneration/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna_S21_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:37:46 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/05/29 18:37:47 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/05/29 18:37:47 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:37:47 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/05/29 18:37:47 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/05/29 18:37:47 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:37:47 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/05/29 18:37:47 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/05/29 18:37:47 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/05/29 18:37:47 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/05/29 18:37:47 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/05/29 18:37:47 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:37:47 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:37:47 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/05/29 18:37:47 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:37:47 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/05/29 18:37:47 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/05/29 18:37:47 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/05/29 18:37:47 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/05/29 18:37:47 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/05/29 18:37:47 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/05/29 18:37:47 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/05/29 18:37:47 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/05/29 18:37:47 INFO  : Logs_Intermediates/MetricsOutput/659_eRe-T1-TDNA-1_HLNMCDRX7_1/659_eRe-T1-TDNA-1_HLNMCDRX7_1_MetricsOutput.tsv: Copied (new)
2026/05/29 18:37:47 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:37:47 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529031224.log: Copied (new)
2026/05/29 18:37:47 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780016806394_87530.log: Copied (new)
2026/05/29 18:37:48 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780016806410_87530.log: Copied (new)
2026/05/29 18:37:48 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/44/666a66622d54459eb3165936559402/.command.out: Copied (new)
2026/05/29 18:37:48 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/01/b09ee4f74ea6720a135a95f8582289/.command.err: Copied (new)
2026/05/29 18:37:48 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/01/b09ee4f74ea6720a135a95f8582289/.command.run: Copied (new)
2026/05/29 18:37:48 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/01/b09ee4f74ea6720a135a95f8582289/.command.log: Copied (new)
2026/05/29 18:37:48 INFO  : ica_logs/out/Logs_Intermediates/Contamination/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529031015.log: Copied (new)
2026/05/29 18:37:48 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/01/b09ee4f74ea6720a135a95f8582289/.command.sh: Copied (new)
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2026/05/29 18:37:48 INFO  : Logs_Intermediates/nextflow_work_logs/24/28cde2ead7c9d45213d93134361948/.command.out: Copied (new)
2026/05/29 18:37:48 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions.txt: Copied (new)
2026/05/29 18:37:48 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/01/b09ee4f74ea6720a135a95f8582289/.command.out: Copied (new)
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2026/05/29 18:37:48 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:37:48 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:37:48 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:37:48 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:37:48 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:37:48 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:37:48 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:37:48 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:37:48 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:37:48 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/37/187e79092e25db889bf20df99fb87c/SampleAnalysisResults/1029_BBAU-T1-TDNA-1_HLNMCDRX7_1_SARJeantLog-20260529032925.log: Copied (new)
2026/05/29 18:37:48 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:37:48 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:37:48 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/05/29 18:37:48 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:37:48 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:37:48 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:37:48 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/05/29 18:37:48 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780020542204_220228.log: Copied (new)
2026/05/29 18:37:48 INFO  : Logs_Intermediates/Contamination/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna_contamination.json: Copied (new)
2026/05/29 18:37:48 INFO  : Logs_Intermediates/Contamination/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529025044.log: Copied (new)
2026/05/29 18:37:48 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/36/142bfcfcc65d64faffc904d4c4ff8e/.command.begin: Copied (new)
2026/05/29 18:37:48 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780020542195_220228.log: Copied (new)
2026/05/29 18:37:49 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/36/142bfcfcc65d64faffc904d4c4ff8e/.command.sh: Copied (new)
2026/05/29 18:37:49 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/36/142bfcfcc65d64faffc904d4c4ff8e/.command.out: Copied (new)
2026/05/29 18:37:49 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/36/142bfcfcc65d64faffc904d4c4ff8e/.exitcode: Copied (new)
2026/05/29 18:37:49 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/36/142bfcfcc65d64faffc904d4c4ff8e/.command.log: Copied (new)
2026/05/29 18:37:49 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/36/142bfcfcc65d64faffc904d4c4ff8e/.command.run: Copied (new)
2026/05/29 18:37:49 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/36/142bfcfcc65d64faffc904d4c4ff8e/.command.trace: Copied (new)
2026/05/29 18:37:49 INFO  : Logs_Intermediates/LrCalculator/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
2026/05/29 18:37:49 INFO  : ica_logs/out/Logs_Intermediates/Gis/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780022297601_259069.log: Copied (new)
2026/05/29 18:37:49 INFO  : Logs_Intermediates/LrCalculator/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529023723.log: Copied (new)
2026/05/29 18:37:49 INFO  : ica_logs/out/Logs_Intermediates/Gis/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780022297608_259069.log: Copied (new)
2026/05/29 18:37:49 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/35/cc86cdfa62d3e3636de20f51ea6387/DnaDragenCaller/1047_MH-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:37:49 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/35/cc86cdfa62d3e3636de20f51ea6387/DnaDragenCaller/1047_MH-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:37:49 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/36/142bfcfcc65d64faffc904d4c4ff8e/.command.err: Copied (new)
2026/05/29 18:37:49 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/35/cc86cdfa62d3e3636de20f51ea6387/DnaDragenCaller/1047_MH-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:37:49 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.bam.md5sum: Copied (new)
2026/05/29 18:37:49 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:37:49 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:37:49 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/35/cc86cdfa62d3e3636de20f51ea6387/DnaDragenCaller/dragen_syslog_1780016294654_67660.log: Copied (new)
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2026/05/29 18:37:49 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.gff3: Copied (new)
2026/05/29 18:37:49 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/05/29 18:37:49 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:37:49 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/05/29 18:37:49 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/05/29 18:37:49 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:37:49 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/05/29 18:37:49 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/05/29 18:37:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/05/29 18:37:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.exon_hist.csv: Copied (new)
2026/05/29 18:37:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/05/29 18:37:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/05/29 18:37:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.fastq_list.csv: Copied (new)
2026/05/29 18:37:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/05/29 18:37:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:37:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/05/29 18:37:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/05/29 18:37:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/05/29 18:37:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/05/29 18:37:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/05/29 18:37:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/05/29 18:37:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/05/29 18:37:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:37:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:37:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:37:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.insert-stats.tab: Copied (new)
2026/05/29 18:37:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:37:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/05/29 18:37:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/05/29 18:37:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/05/29 18:37:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.bam.bai: Copied (new)
2026/05/29 18:37:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_output.json: Copied (new)
2026/05/29 18:37:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_log.txt: Copied (new)
2026/05/29 18:37:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:37:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:37:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.pileup.txt: Copied (new)
2026/05/29 18:37:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:37:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:37:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:37:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:37:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:37:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:37:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:37:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:37:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:37:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:37:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/05/29 18:37:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/05/29 18:37:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/05/29 18:37:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/05/29 18:37:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/05/29 18:37:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/05/29 18:37:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:37:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:37:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/05/29 18:37:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/05/29 18:37:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/05/29 18:37:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/05/29 18:37:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/05/29 18:37:52 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/05/29 18:37:52 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/05/29 18:37:52 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:37:52 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:37:52 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/05/29 18:37:52 INFO  : Logs_Intermediates/FastqGeneration/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna_S29_L002_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:37:52 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/05/29 18:37:52 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:37:52 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/05/29 18:37:52 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/05/29 18:37:52 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/05/29 18:37:52 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/05/29 18:37:52 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/05/29 18:37:52 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/05/29 18:37:52 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/05/29 18:37:52 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/05/29 18:37:52 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/3d/3752369fb44b742b6431163da12b07/.command.begin: Copied (new)
2026/05/29 18:37:52 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions.txt: Copied (new)
2026/05/29 18:37:52 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/3d/3752369fb44b742b6431163da12b07/.command.err: Copied (new)
2026/05/29 18:37:52 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780017834680_117083.log: Copied (new)
2026/05/29 18:37:52 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:37:52 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/3d/3752369fb44b742b6431163da12b07/.command.out: Copied (new)
2026/05/29 18:37:52 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.combined.counts.txt.gz: Copied (new)
2026/05/29 18:37:52 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/3d/3752369fb44b742b6431163da12b07/.command.run: Copied (new)
2026/05/29 18:37:52 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/3d/3752369fb44b742b6431163da12b07/.command.log: Copied (new)
2026/05/29 18:37:52 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780017834695_117083.log: Copied (new)
2026/05/29 18:37:52 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/3d/3752369fb44b742b6431163da12b07/.command.sh: Copied (new)
2026/05/29 18:37:52 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/3d/3752369fb44b742b6431163da12b07/.command.trace: Copied (new)
2026/05/29 18:37:52 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/3d/3752369fb44b742b6431163da12b07/.exitcode: Copied (new)
2026/05/29 18:37:52 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/2b/2c4225627ab2a85f991527f88f781e/.command.begin: Copied (new)
2026/05/29 18:37:52 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/2b/2c4225627ab2a85f991527f88f781e/.command.err: Copied (new)
2026/05/29 18:37:52 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/2b/2c4225627ab2a85f991527f88f781e/.command.out: Copied (new)
2026/05/29 18:37:53 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/2b/2c4225627ab2a85f991527f88f781e/.command.log: Copied (new)
2026/05/29 18:37:53 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/2b/2c4225627ab2a85f991527f88f781e/.command.run: Copied (new)
2026/05/29 18:37:53 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/2b/2c4225627ab2a85f991527f88f781e/.exitcode: Copied (new)
2026/05/29 18:37:53 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/2b/2c4225627ab2a85f991527f88f781e/.command.trace: Copied (new)
2026/05/29 18:37:53 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/2b/2c4225627ab2a85f991527f88f781e/.command.sh: Copied (new)
2026/05/29 18:37:53 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1029_JAD-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529005108.log: Copied (new)
2026/05/29 18:37:53 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/46/28fe5009a7a8c44f216847c4781b63/.command.begin: Copied (new)
2026/05/29 18:37:53 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/2b/2c4225627ab2a85f991527f88f781e/gen_coverage_reports.log: Copied (new)
2026/05/29 18:37:53 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/46/28fe5009a7a8c44f216847c4781b63/.command.err: Copied (new)
2026/05/29 18:37:53 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/46/28fe5009a7a8c44f216847c4781b63/.command.out: Copied (new)
2026/05/29 18:37:53 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/46/28fe5009a7a8c44f216847c4781b63/.command.log: Copied (new)
2026/05/29 18:37:53 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/46/28fe5009a7a8c44f216847c4781b63/.exitcode: Copied (new)
2026/05/29 18:37:53 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/46/28fe5009a7a8c44f216847c4781b63/.command.sh: Copied (new)
2026/05/29 18:37:53 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/46/28fe5009a7a8c44f216847c4781b63/.command.run: Copied (new)
2026/05/29 18:37:53 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
2026/05/29 18:37:53 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/46/28fe5009a7a8c44f216847c4781b63/.command.trace: Copied (new)
2026/05/29 18:37:53 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1029_JAD-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780022962498_301203.log: Copied (new)
2026/05/29 18:37:53 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1029_JAD-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780022962490_301203.log: Copied (new)
2026/05/29 18:37:53 INFO  : Logs_Intermediates/DnaCoverageReports/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.exon_cov_report.tsv: Copied (new)
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2026/05/29 18:37:53 INFO  : Logs_Intermediates/Tmb/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529010559.log: Copied (new)
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2026/05/29 18:37:54 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529031224.log: Copied (new)
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2026/05/29 18:37:54 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna.bam: Multi-thread Copied (new)
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2026/05/29 18:37:54 INFO  : Logs_Intermediates/LrAnnotation/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529023720.log: Copied (new)
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2026/05/29 18:37:54 INFO  : Logs_Intermediates/CombinedVariantOutput/659_pO-T1-TDNA-1_HLNMCDRX7_1/659_pO-T1-TDNA-1_HLNMCDRX7_1_CombinedVariantOutput.tsv: Copied (new)
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2026/05/29 18:37:55 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/05/a919702dc0f5ca2616292eb98003df/.command.err: Copied (new)
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2026/05/29 18:37:55 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/38/856c54cf30c499672b7921d123a746/.command.begin: Copied (new)
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2026/05/29 18:37:55 INFO  : Logs_Intermediates/Contamination/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529025047.log: Copied (new)
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2026/05/29 18:37:56 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/38/856c54cf30c499672b7921d123a746/.exitcode: Copied (new)
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2026/05/29 18:37:56 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780021934942_268566.log: Copied (new)
2026/05/29 18:37:56 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/46/c76c3a5574785e63f68363fcb07317/.command.begin: Copied (new)
2026/05/29 18:37:56 INFO  : ica_logs/out/Logs_Intermediates/Annotation/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529025336.log: Copied (new)
2026/05/29 18:37:56 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/46/c76c3a5574785e63f68363fcb07317/.command.err: Copied (new)
2026/05/29 18:37:56 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/46/c76c3a5574785e63f68363fcb07317/.command.log: Copied (new)
2026/05/29 18:37:56 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/46/c76c3a5574785e63f68363fcb07317/.command.out: Copied (new)
2026/05/29 18:37:56 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/46/c76c3a5574785e63f68363fcb07317/.command.run: Copied (new)
2026/05/29 18:37:56 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/46/c76c3a5574785e63f68363fcb07317/.command.sh: Copied (new)
2026/05/29 18:37:56 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/46/c76c3a5574785e63f68363fcb07317/.command.trace: Copied (new)
2026/05/29 18:37:56 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/46/c76c3a5574785e63f68363fcb07317/.exitcode: Copied (new)
2026/05/29 18:37:57 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/47/7048523db33133d0950745cd545049/.command.begin: Copied (new)
2026/05/29 18:37:57 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/47/7048523db33133d0950745cd545049/.command.err: Copied (new)
2026/05/29 18:37:57 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/47/7048523db33133d0950745cd545049/.command.run: Copied (new)
2026/05/29 18:37:57 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/47/7048523db33133d0950745cd545049/.command.sh: Copied (new)
2026/05/29 18:37:57 INFO  : Logs_Intermediates/DnaDragenCaller/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.bam: Multi-thread Copied (new)
2026/05/29 18:37:57 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/47/7048523db33133d0950745cd545049/.command.trace: Copied (new)
2026/05/29 18:37:57 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/47/7048523db33133d0950745cd545049/.exitcode: Copied (new)
2026/05/29 18:37:57 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:37:57 INFO  : Logs_Intermediates/DnaDragenCaller/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna/1029_BMTS-T1-TDNA-1_HLNMCDRX7_1_dna.bam: Multi-thread Copied (new)
2026/05/29 18:37:57 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:37:57 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:37:57 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/35/fffa8e78b1ac1f6e7fe614b4b9a6f6/.command.begin: Copied (new)
2026/05/29 18:37:57 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/35/fffa8e78b1ac1f6e7fe614b4b9a6f6/.command.err: Copied (new)
2026/05/29 18:37:57 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780014886787_7192.log: Copied (new)
2026/05/29 18:37:57 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780014886772_7192.log: Copied (new)
2026/05/29 18:37:57 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/35/fffa8e78b1ac1f6e7fe614b4b9a6f6/.command.out: Copied (new)
2026/05/29 18:37:57 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/35/fffa8e78b1ac1f6e7fe614b4b9a6f6/.command.log: Copied (new)
2026/05/29 18:37:57 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.combined.counts.txt.gz: Copied (new)
2026/05/29 18:37:57 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/35/fffa8e78b1ac1f6e7fe614b4b9a6f6/.command.run: Copied (new)
2026/05/29 18:37:57 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/35/fffa8e78b1ac1f6e7fe614b4b9a6f6/.command.sh: Copied (new)
2026/05/29 18:37:57 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/35/fffa8e78b1ac1f6e7fe614b4b9a6f6/.command.trace: Copied (new)
2026/05/29 18:37:58 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/35/fffa8e78b1ac1f6e7fe614b4b9a6f6/.exitcode: Copied (new)
2026/05/29 18:37:58 INFO  : Logs_Intermediates/Tmb/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:37:58 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/35/fffa8e78b1ac1f6e7fe614b4b9a6f6/Nirvana-20260529025718.log: Copied (new)
2026/05/29 18:37:58 INFO  : Logs_Intermediates/Tmb/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:37:58 INFO  : Logs_Intermediates/Tmb/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:37:58 INFO  : Logs_Intermediates/Tmb/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:37:58 INFO  : Logs_Intermediates/Tmb/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:37:58 INFO  : Logs_Intermediates/Tmb/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz: Copied (new)
2026/05/29 18:37:58 INFO  : Logs_Intermediates/Tmb/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.tmb.trace.tsv: Copied (new)
2026/05/29 18:37:58 INFO  : Logs_Intermediates/Tmb/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:37:58 INFO  : Logs_Intermediates/Tmb/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.tmb.metrics.csv: Copied (new)
2026/05/29 18:37:58 INFO  : Logs_Intermediates/Tmb/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529013602.log: Copied (new)
2026/05/29 18:37:58 INFO  : Logs_Intermediates/Tmb/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780022200363_283112.log: Copied (new)
2026/05/29 18:37:58 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529004222.log: Copied (new)
2026/05/29 18:37:58 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780022996396_302784.log: Copied (new)
2026/05/29 18:37:58 INFO  : Logs_Intermediates/Tmb/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780022200356_283112.log: Copied (new)
2026/05/29 18:37:58 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/47/6b9fad8577d89573527c1842c96c00/.command.begin: Copied (new)
2026/05/29 18:37:58 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780022996389_302784.log: Copied (new)
2026/05/29 18:37:58 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/47/6b9fad8577d89573527c1842c96c00/.command.err: Copied (new)
2026/05/29 18:37:58 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/47/6b9fad8577d89573527c1842c96c00/.command.out: Copied (new)
2026/05/29 18:37:58 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/47/6b9fad8577d89573527c1842c96c00/.command.sh: Copied (new)
2026/05/29 18:37:58 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/47/6b9fad8577d89573527c1842c96c00/.command.log: Copied (new)
2026/05/29 18:37:58 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/47/6b9fad8577d89573527c1842c96c00/.command.run: Copied (new)
2026/05/29 18:37:58 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/47/6b9fad8577d89573527c1842c96c00/.command.trace: Copied (new)
2026/05/29 18:37:58 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/47/6b9fad8577d89573527c1842c96c00/.exitcode: Copied (new)
2026/05/29 18:37:58 INFO  : ica_logs/out/Logs_Intermediates/DnaCoverageReports/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/05/29 18:37:58 INFO  : Logs_Intermediates/FastqGeneration/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna_S5_L001_R1_001.fastq.gz: Copied (new)
2026/05/29 18:37:58 INFO  : Logs_Intermediates/FastqGeneration/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna_S5_L001_R2_001.fastq.gz: Copied (new)
2026/05/29 18:37:58 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780020941759_213197.log: Copied (new)
2026/05/29 18:37:59 INFO  : Logs_Intermediates/FastqGeneration/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna_S5_L002_R1_001.fastq.gz: Copied (new)
2026/05/29 18:37:59 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780020941751_213197.log: Copied (new)
2026/05/29 18:37:59 INFO  : Logs_Intermediates/FastqGeneration/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna_S5_L002_R2_001.fastq.gz: Copied (new)
2026/05/29 18:37:59 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/37/a5610682b8cbcae13b1d2e48f96d38/.command.begin: Copied (new)
2026/05/29 18:37:59 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/27/e828b8a085f6adfa3b390f0a895ae9/LrCalculator/LrCalculator-20260529023723.log: Copied (new)
2026/05/29 18:37:59 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/37/a5610682b8cbcae13b1d2e48f96d38/.command.err: Copied (new)
2026/05/29 18:37:59 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/37/a5610682b8cbcae13b1d2e48f96d38/.command.log: Copied (new)
2026/05/29 18:37:59 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/37/a5610682b8cbcae13b1d2e48f96d38/.command.run: Copied (new)
2026/05/29 18:37:59 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/37/a5610682b8cbcae13b1d2e48f96d38/.command.sh: Copied (new)
2026/05/29 18:37:59 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/37/a5610682b8cbcae13b1d2e48f96d38/.command.out: Copied (new)
2026/05/29 18:37:59 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/37/a5610682b8cbcae13b1d2e48f96d38/.command.trace: Copied (new)
2026/05/29 18:37:59 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/37/a5610682b8cbcae13b1d2e48f96d38/.exitcode: Copied (new)
2026/05/29 18:37:59 INFO  : 
Transferred:   	  261.613 GiB / 383.062 GiB, 68%, 1.551 GiB/s, ETA 1m18s
Transferred:         6941 / 14458, 48%
Elapsed time:       3m0.0s
Transferring:
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 93% /4.633Gi, 34.683Mi/s, 8s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 85% /4.466Gi, 33.063Mi/s, 20s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 84% /4.678Gi, 25.757Mi/s, 29s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 81% /4.499Gi, 32.047Mi/s, 26s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 86% /4.415Gi, 33.863Mi/s, 18s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 56% /5.954Gi, 27.655Mi/s, 1m35s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 62% /4.890Gi, 26.120Mi/s, 1m11s
 * Logs_Intermediates/Fas…6_L001_R1_001.fastq.gz: 86% /3.727Gi, 23.540Mi/s, 22s
 * Logs_Intermediates/Fas…6_L001_R2_001.fastq.gz: 84% /3.787Gi, 31.823Mi/s, 19s
 * Logs_Intermediates/Fas…6_L002_R1_001.fastq.gz: 78% /3.640Gi, 23.879Mi/s, 34s
 * Logs_Intermediates/Fas…6_L002_R2_001.fastq.gz: 80% /3.699Gi, 24.008Mi/s, 31s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 31% /8.846Gi, 27.501Mi/s, 3m44s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 58% /4.210Gi, 30.792Mi/s, 57s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 56% /4.068Gi, 24.421Mi/s, 1m14s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 47% /4.417Gi, 33.119Mi/s, 1m11s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 66% /3.346Gi, 33.463Mi/s, 34s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 47% /3.864Gi, 28.151Mi/s, 1m13s
 * Logs_Intermediates/Fas…5_L001_R1_001.fastq.gz: 36% /4.295Gi, 26.051Mi/s, 1m46s
 * Logs_Intermediates/Fas…5_L001_R2_001.fastq.gz: 44% /4.458Gi, 31.607Mi/s, 1m20s
 * Logs_Intermediates/Fas…5_L002_R1_001.fastq.gz: 42% /4.151Gi, 31.769Mi/s, 1m16s
 * Logs_Intermediates/Fas…5_L002_R2_001.fastq.gz: 39% /4.316Gi, 25.369Mi/s, 1m46s
 * Logs_Intermediates/Fas…9_L001_R1_001.fastq.gz: 80% /1.665Gi, 27.638Mi/s, 11s
 * Logs_Intermediates/Fas…9_L001_R2_001.fastq.gz: 90% /1.717Gi, 32.318Mi/s, 4s
 * Logs_Intermediates/Fas…9_L002_R1_001.fastq.gz: 92% /1.623Gi, 29.153Mi/s, 4s
 * Logs_Intermediates/Fas…9_L002_R2_001.fastq.gz: 74% /1.676Gi, 30.213Mi/s, 14s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 12% /11.062Gi, 22.826Mi/s, 7m15s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 30% /4.656Gi, 32.321Mi/s, 1m41s
 * Logs_Intermediates/Fas…4_L001_R1_001.fastq.gz: 88% /1.593Gi, 33.893Mi/s, 5s
 * Logs_Intermediates/Fas…4_L001_R2_001.fastq.gz: 79% /1.651Gi, 32.262Mi/s, 10s
 * Logs_Intermediates/Fas…4_L002_R1_001.fastq.gz: 79% /1.541Gi, 27.293Mi/s, 12s
 * Logs_Intermediates/Fas…4_L002_R2_001.fastq.gz: 72% /1.600Gi, 29.971Mi/s, 15s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 23% /4.686Gi, 26.885Mi/s, 2m16s
 * Logs_Intermediates/Fas…2_L001_R1_001.fastq.gz: 63% /1.530Gi, 28.048Mi/s, 20s
 * Logs_Intermediates/Fas…2_L001_R2_001.fastq.gz: 69% /1.443Gi, 30.208Mi/s, 15s
 * Logs_Intermediates/Fas…2_L002_R1_001.fastq.gz: 62% /1.457Gi, 25.855Mi/s, 21s
 * Logs_Intermediates/Fas…2_L002_R2_001.fastq.gz: 66% /1.372Gi, 24.572Mi/s, 19s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 24% /4.249Gi, 33.218Mi/s, 1m39s
 * Logs_Intermediates/Fas…1_L001_R1_001.fastq.gz: 55% /1.417Gi, 27.626Mi/s, 23s
 * Logs_Intermediates/Fas…1_L001_R2_001.fastq.gz: 63% /1.467Gi, 33.749Mi/s, 16s
 * Logs_Intermediates/Fas…1_L002_R1_001.fastq.gz: 58% /1.370Gi, 28.261Mi/s, 20s
 * Logs_Intermediates/Fas…1_L002_R2_001.fastq.gz: 55% /1.420Gi, 27.527Mi/s, 23s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 18% /4.057Gi, 33.342Mi/s, 1m41s
 * Logs_Intermediates/Fas…2_L001_R1_001.fastq.gz: 50% /1.360Gi, 34.999Mi/s, 19s
 * Logs_Intermediates/Fas…2_L001_R2_001.fastq.gz: 49% /1.395Gi, 32.126Mi/s, 22s
 * Logs_Intermediates/Fas…2_L002_R1_001.fastq.gz: 37% /1.327Gi, 25.629Mi/s, 33s
 * Logs_Intermediates/Fas…2_L002_R2_001.fastq.gz: 36% /1.364Gi, 23.843Mi/s, 37s
 * ica_logs/work/c6/f7cdd…936559402/.command.log: 82% /76.759Mi, 3.218Mi/s, 4s
 * Logs_Intermediates/Fas…3_L001_R1_001.fastq.gz: 25% /1.697Gi, 26.375Mi/s, 48s
 * Logs_Intermediates/Fas…3_L001_R2_001.fastq.gz: 31% /1.756Gi, 33.090Mi/s, 36s
 * Logs_Intermediates/Fas…3_L002_R1_001.fastq.gz: 30% /1.666Gi, 30.000Mi/s, 39s
 * Logs_Intermediates/Fas…3_L002_R2_001.fastq.gz: 30% /1.726Gi, 30.000Mi/s, 40s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam:  8% /3.690Gi, 20.000Mi/s, 2m52s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam:  4% /4.691Gi, 24.889Mi/s, 3m3s
 * Logs_Intermediates/Fas…4_L001_R1_001.fastq.gz:  9% /1.307Gi, 32.000Mi/s, 37s
 * Logs_Intermediates/Fas…4_L001_R2_001.fastq.gz:  7% /1.295Gi, 16.000Mi/s, 1m16s
 * Logs_Intermediates/Fas…4_L002_R1_001.fastq.gz:  7% /1.279Gi, 24.000Mi/s, 50s
 * Logs_Intermediates/Fas…4_L002_R2_001.fastq.gz:  9% /1.269Gi, 24.000Mi/s, 48s
 * ica_logs/work/c6/f7cdd…5cd545049/.command.log: 46% /77.199Mi, 16.998Mi/s, 2s
 * ica_logs/work/c6/f7cdd…5cd545049/.command.out: 16% /77.198Mi, 6.498Mi/s, 9s
 * ica_logs/out/Logs_Inte…tor-20260529031223.log:100% /1.188Ki, 0/s, -
 * ica_logs/work/c6/f7cdd…Log-20260529032816.log: transferring
 * ica_logs/out/Logs_Inte…80021115673_220154.log: transferring
 * ica_logs/out/Logs_Inte…80021115665_220154.log: transferring
 * Logs_Intermediates/LrA…nCNV_Annotated.json.gz: transferring

2026/05/29 18:37:59 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529031223.log: Copied (new)
2026/05/29 18:37:59 INFO  : ica_logs/out/Logs_Intermediates/Gis/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780021115673_220154.log: Copied (new)
2026/05/29 18:37:59 INFO  : ica_logs/out/Logs_Intermediates/Gis/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780021115665_220154.log: Copied (new)
2026/05/29 18:37:59 INFO  : Logs_Intermediates/LrAnnotation/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna_DNAExonCNV_Annotated.json.gz.jsi: Copied (new)
2026/05/29 18:37:59 INFO  : Logs_Intermediates/LrAnnotation/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna_DNAExonCNV_Annotated.json.gz: Copied (new)
2026/05/29 18:37:59 INFO  : Logs_Intermediates/LrAnnotation/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529023724.log: Copied (new)
2026/05/29 18:37:59 INFO  : Logs_Intermediates/nextflow_work_logs/26/22c288014a70fb0a85a1d575b5aa29/.command.err: Copied (new)
2026/05/29 18:37:59 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529031222.log: Copied (new)
2026/05/29 18:37:59 INFO  : Logs_Intermediates/nextflow_work_logs/26/22c288014a70fb0a85a1d575b5aa29/.command.log: Copied (new)
2026/05/29 18:37:59 INFO  : Logs_Intermediates/nextflow_work_logs/26/22c288014a70fb0a85a1d575b5aa29/.command.out: Copied (new)
2026/05/29 18:37:59 INFO  : Logs_Intermediates/nextflow_work_logs/26/22c288014a70fb0a85a1d575b5aa29/.command.run: Copied (new)
2026/05/29 18:37:59 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/06/c176e867ca79e197b61914a06801a4/.command.err: Copied (new)
2026/05/29 18:37:59 INFO  : Logs_Intermediates/nextflow_work_logs/26/22c288014a70fb0a85a1d575b5aa29/.command.sh: Copied (new)
2026/05/29 18:37:59 INFO  : Logs_Intermediates/MetricsOutput/659_pO-T1-TDNA-1_HLNMCDRX7_1/659_pO-T1-TDNA-1_HLNMCDRX7_1_MetricsOutput.tsv: Copied (new)
2026/05/29 18:37:59 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/06/c176e867ca79e197b61914a06801a4/.command.out: Copied (new)
2026/05/29 18:38:00 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/06/c176e867ca79e197b61914a06801a4/.command.run: Copied (new)
2026/05/29 18:38:00 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/06/c176e867ca79e197b61914a06801a4/.command.log: Copied (new)
2026/05/29 18:38:00 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/06/c176e867ca79e197b61914a06801a4/.command.sh: Copied (new)
2026/05/29 18:38:00 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.bam.md5sum: Copied (new)
2026/05/29 18:38:00 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:38:00 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.gff3: Copied (new)
2026/05/29 18:38:00 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:38:00 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:38:00 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/05/29 18:38:00 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/05/29 18:38:00 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/05/29 18:38:00 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.bam.bai: Copied (new)
2026/05/29 18:38:00 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:38:01 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/05/29 18:38:01 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/05/29 18:38:01 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/05/29 18:38:01 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/05/29 18:38:01 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/05/29 18:38:01 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.exon_hist.csv: Copied (new)
2026/05/29 18:38:01 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/05/29 18:38:01 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:38:01 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.fastq_list.csv: Copied (new)
2026/05/29 18:38:01 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/05/29 18:38:01 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/05/29 18:38:01 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/05/29 18:38:01 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/05/29 18:38:01 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/05/29 18:38:01 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/05/29 18:38:02 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/47/7048523db33133d0950745cd545049/.command.log: Copied (new)
2026/05/29 18:38:02 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/05/29 18:38:02 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:38:02 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:38:02 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:38:02 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.insert-stats.tab: Copied (new)
2026/05/29 18:38:02 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/05/29 18:38:02 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/05/29 18:38:02 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_log.txt: Copied (new)
2026/05/29 18:38:02 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:38:02 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_output.json: Copied (new)
2026/05/29 18:38:02 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:38:02 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/05/29 18:38:02 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:38:02 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.pileup.txt: Copied (new)
2026/05/29 18:38:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:38:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:38:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:38:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:38:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:38:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:38:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:38:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:38:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:38:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:38:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/05/29 18:38:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/05/29 18:38:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/05/29 18:38:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/05/29 18:38:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/05/29 18:38:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
2026/05/29 18:38:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/05/29 18:38:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:38:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:38:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/05/29 18:38:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/05/29 18:38:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/05/29 18:38:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/05/29 18:38:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/05/29 18:38:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/05/29 18:38:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/05/29 18:38:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/05/29 18:38:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:38:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:38:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:38:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/05/29 18:38:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/05/29 18:38:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/05/29 18:38:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/05/29 18:38:05 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions.txt: Copied (new)
2026/05/29 18:38:05 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/05/29 18:38:05 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/05/29 18:38:05 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/05/29 18:38:05 INFO  : Logs_Intermediates/FastqGeneration/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna_S19_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:38:05 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/05/29 18:38:05 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/05/29 18:38:05 INFO  : ica_logs/out/Logs_Intermediates/Gis/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780020910842_227822.log: Copied (new)
2026/05/29 18:38:05 INFO  : ica_logs/out/Logs_Intermediates/Gis/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780020910835_227822.log: Copied (new)
2026/05/29 18:38:05 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:38:05 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/3a/d44787c9dde25e8b1789068716f197/.command.begin: Copied (new)
2026/05/29 18:38:05 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780016329061_74124.log: Copied (new)
2026/05/29 18:38:05 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780016329077_74124.log: Copied (new)
2026/05/29 18:38:05 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/3a/d44787c9dde25e8b1789068716f197/.command.err: Copied (new)
2026/05/29 18:38:05 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/3a/d44787c9dde25e8b1789068716f197/.command.log: Copied (new)
2026/05/29 18:38:05 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/3a/d44787c9dde25e8b1789068716f197/.command.sh: Copied (new)
2026/05/29 18:38:05 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/3a/d44787c9dde25e8b1789068716f197/.command.run: Copied (new)
2026/05/29 18:38:05 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/3a/d44787c9dde25e8b1789068716f197/.command.out: Copied (new)
2026/05/29 18:38:05 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/3a/d44787c9dde25e8b1789068716f197/.command.trace: Copied (new)
2026/05/29 18:38:05 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/3a/d44787c9dde25e8b1789068716f197/.exitcode: Copied (new)
2026/05/29 18:38:05 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.bam: Copied (new)
2026/05/29 18:38:05 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna-replay.json: Copied (new)
2026/05/29 18:38:05 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.bam.md5sum: Copied (new)
2026/05/29 18:38:05 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.bam.bai: Copied (new)
2026/05/29 18:38:05 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/05/29 18:38:05 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/05/29 18:38:05 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/05/29 18:38:05 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/05/29 18:38:05 INFO  : Logs_Intermediates/FastqGeneration/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna_S24_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:38:05 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.gff3: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/FastqGeneration/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna_S19_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.fastq_list.csv: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.exon_hist.csv: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.baf: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.insert-stats.tab: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_log.txt: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_output.json: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.pileup.txt: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.seg.bw: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
2026/05/29 18:38:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.seg: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.seg.called.merged: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.bw: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.target.counts.gz: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/05/29 18:38:07 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/44/666a66622d54459eb3165936559402/.command.log: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.time_metrics.csv: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.umi-regions.txt: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.tn.bw: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/05/29 18:38:07 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529011832.log: Copied (new)
2026/05/29 18:38:07 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780023096319_307521.log: Copied (new)
2026/05/29 18:38:07 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780023096311_307521.log: Copied (new)
2026/05/29 18:38:07 INFO  : ica_logs/out/Logs_Intermediates/Annotation/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529025612.log: Copied (new)
2026/05/29 18:38:07 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780018406199_132977.log: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:38:08 INFO  : Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780018406215_132977.log: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/out/Logs_Intermediates/Contamination/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529032457.log: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/out/Logs_Intermediates/DnaCoverageReports/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/4a/60afc54ff85c0c444a2c938b5824e7/.command.begin: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780015502966_47384.log: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780015502982_47384.log: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/4a/60afc54ff85c0c444a2c938b5824e7/.command.err: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/4a/60afc54ff85c0c444a2c938b5824e7/.command.log: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/4a/60afc54ff85c0c444a2c938b5824e7/.command.out: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/4a/60afc54ff85c0c444a2c938b5824e7/.command.sh: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/4a/60afc54ff85c0c444a2c938b5824e7/.exitcode: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/4a/60afc54ff85c0c444a2c938b5824e7/.command.trace: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529031221.log: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/4a/60afc54ff85c0c444a2c938b5824e7/.command.run: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780020585745_216679.log: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/36/142bfcfcc65d64faffc904d4c4ff8e/DnaDragenCaller/1029_JAD-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/36/142bfcfcc65d64faffc904d4c4ff8e/DnaDragenCaller/1029_JAD-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780020585737_216679.log: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/36/142bfcfcc65d64faffc904d4c4ff8e/DnaDragenCaller/1029_JAD-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/36/142bfcfcc65d64faffc904d4c4ff8e/DnaDragenCaller/dragen_syslog_1780015392510_46411.log: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529025718.log: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/out/Logs_Intermediates/Contamination/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529031014.log: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/36/4fee4211ed6b71c203a480ce7bbccc/.command.begin: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/36/4fee4211ed6b71c203a480ce7bbccc/.command.err: Copied (new)
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2026/05/29 18:38:08 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/36/4fee4211ed6b71c203a480ce7bbccc/.command.log: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/36/4fee4211ed6b71c203a480ce7bbccc/.command.run: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/36/4fee4211ed6b71c203a480ce7bbccc/.command.sh: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/36/4fee4211ed6b71c203a480ce7bbccc/.command.out: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/36/4fee4211ed6b71c203a480ce7bbccc/.exitcode: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/36/4fee4211ed6b71c203a480ce7bbccc/.command.trace: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/36/4fee4211ed6b71c203a480ce7bbccc/gen_coverage_reports.log: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/48/0bacceb9cb23b5ae459045167be599/.command.begin: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/48/0bacceb9cb23b5ae459045167be599/.command.err: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/48/0bacceb9cb23b5ae459045167be599/.command.out: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/48/0bacceb9cb23b5ae459045167be599/.command.log: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/48/0bacceb9cb23b5ae459045167be599/.command.sh: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/48/0bacceb9cb23b5ae459045167be599/.command.run: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/48/0bacceb9cb23b5ae459045167be599/.exitcode: Copied (new)
2026/05/29 18:38:08 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/48/0bacceb9cb23b5ae459045167be599/.command.trace: Copied (new)
2026/05/29 18:38:09 INFO  : Logs_Intermediates/nextflow_work_logs/27/923950db8330633c585af3e8c22c11/.command.err: Copied (new)
2026/05/29 18:38:09 INFO  : Logs_Intermediates/nextflow_work_logs/27/923950db8330633c585af3e8c22c11/.command.log: Copied (new)
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2026/05/29 18:38:09 INFO  : Logs_Intermediates/nextflow_work_logs/27/923950db8330633c585af3e8c22c11/.command.out: Copied (new)
2026/05/29 18:38:09 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/3d/3752369fb44b742b6431163da12b07/DnaDragenCaller/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
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2026/05/29 18:38:09 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/44/666a66622d54459eb3165936559402/SampleAnalysisResults/1267_DZ-T1-TDNA-1_HLNMCDRX7_1_SARJeantLog-20260529032816.log: Copied (new)
2026/05/29 18:38:09 INFO  : Logs_Intermediates/nextflow_work_logs/27/923950db8330633c585af3e8c22c11/.command.sh: Copied (new)
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2026/05/29 18:38:09 INFO  : ica_logs/out/Logs_Intermediates/Annotation/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529025715.log: Copied (new)
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2026/05/29 18:38:09 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/38/5b9fc83a5546200018a1b3b43c981a/.command.err: Copied (new)
2026/05/29 18:38:09 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/38/5b9fc83a5546200018a1b3b43c981a/.command.out: Copied (new)
2026/05/29 18:38:09 INFO  : Logs_Intermediates/FastqGeneration/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna_S19_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:38:09 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/38/5b9fc83a5546200018a1b3b43c981a/.command.log: Copied (new)
2026/05/29 18:38:09 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/38/5b9fc83a5546200018a1b3b43c981a/.command.run: Copied (new)
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2026/05/29 18:38:09 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/38/5b9fc83a5546200018a1b3b43c981a/.exitcode: Copied (new)
2026/05/29 18:38:09 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/07/2616c2dde48118a5f9ec0c50783e06/.command.err: Copied (new)
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2026/05/29 18:38:09 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/07/2616c2dde48118a5f9ec0c50783e06/.command.out: Copied (new)
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2026/05/29 18:38:14 INFO  : Logs_Intermediates/FastqGeneration/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna_S22_L001_R2_001.fastq.gz: Multi-thread Copied (new)
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2026/05/29 18:38:14 INFO  : Logs_Intermediates/FastqGeneration/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna_S24_L002_R1_001.fastq.gz: Multi-thread Copied (new)
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2026/05/29 18:38:14 INFO  : ica_logs/out/Logs_Intermediates/Contamination/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529025045.log: Copied (new)
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2026/05/29 18:38:14 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/1267_EN-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529025719.log: Copied (new)
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2026/05/29 18:38:15 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0a/4bfa70cfcb25e279ac937b0a40d571/.command.err: Copied (new)
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2026/05/29 18:38:15 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0a/4bfa70cfcb25e279ac937b0a40d571/.command.out: Copied (new)
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2026/05/29 18:38:15 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0a/4bfa70cfcb25e279ac937b0a40d571/.command.run: Copied (new)
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2026/05/29 18:38:15 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0a/4bfa70cfcb25e279ac937b0a40d571/.command.sh: Copied (new)
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2026/05/29 18:38:15 INFO  : ica_logs/out/Logs_Intermediates/Gis/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780023634150_302645.log: Copied (new)
2026/05/29 18:38:15 INFO  : Logs_Intermediates/FastqGeneration/Logs/Lane_2/FastqComplete.txt: Copied (new)
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2026/05/29 18:38:15 INFO  : Logs_Intermediates/FastqGeneration/Logs/Lane_2/Errors.log: Copied (new)
2026/05/29 18:38:15 INFO  : Logs_Intermediates/FastqGeneration/Logs/Lane_2/Warnings.log: Copied (new)
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2026/05/29 18:38:17 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0c/4592571d17bbd3da7fd321401d89b8/.command.run: Copied (new)
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2026/05/29 18:38:17 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0a/9d531ddf278b2ec956acb77cad3396/.command.err: Copied (new)
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2026/05/29 18:38:18 INFO  : Logs_Intermediates/nextflow_work_logs/2c/dc6650b5ac60705a3a6a6c0b0f69b1/.command.err: Copied (new)
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2026/05/29 18:38:18 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0c/5e73ac72a3345167d7fbfa7fa5bc6a/.command.err: Copied (new)
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2026/05/29 18:38:19 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/4a/d760b5c1a9a726242508d460834869/.exitcode: Copied (new)
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2026/05/29 18:38:19 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/53/219bc57cdc8988d29daad8c271fad6/.exitcode: Copied (new)
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2026/05/29 18:38:19 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/49/2ec22684738112bedc7a861aac27cb/.command.begin: Copied (new)
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2026/05/29 18:38:19 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/49/2ec22684738112bedc7a861aac27cb/.command.log: Copied (new)
2026/05/29 18:38:19 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/49/2ec22684738112bedc7a861aac27cb/.exitcode: Copied (new)
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2026/05/29 18:38:19 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0a/b64a10cd54e6c2367fb008968bb8ec/.command.err: Copied (new)
2026/05/29 18:38:19 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0f/2cfff0008453e186acab014288ba7d/.command.run: Copied (new)
2026/05/29 18:38:19 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0a/b64a10cd54e6c2367fb008968bb8ec/.command.log: Copied (new)
2026/05/29 18:38:19 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0f/2cfff0008453e186acab014288ba7d/.command.sh: Copied (new)
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2026/05/29 18:38:19 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0a/b64a10cd54e6c2367fb008968bb8ec/.command.out: Copied (new)
2026/05/29 18:38:19 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0a/b64a10cd54e6c2367fb008968bb8ec/.command.sh: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0a/b64a10cd54e6c2367fb008968bb8ec/.command.run: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/48/93af6959ce3c34c82fdda36bdcc715/.command.err: Copied (new)
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2026/05/29 18:38:20 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/48/93af6959ce3c34c82fdda36bdcc715/.command.sh: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/48/93af6959ce3c34c82fdda36bdcc715/.exitcode: Copied (new)
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2026/05/29 18:38:20 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529025719.log: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/57/a3d58938a2d331611adad71f76d894/.command.begin: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/out/Logs_Intermediates/Contamination/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/Spoiler-20260529025047.log: Copied (new)
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2026/05/29 18:38:20 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/57/a3d58938a2d331611adad71f76d894/.command.log: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/57/a3d58938a2d331611adad71f76d894/.command.run: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/57/a3d58938a2d331611adad71f76d894/.command.err: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/57/a3d58938a2d331611adad71f76d894/.command.sh: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/57/a3d58938a2d331611adad71f76d894/.command.trace: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/57/a3d58938a2d331611adad71f76d894/.exitcode: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/out/Logs_Intermediates/Gis/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780022994583_299562.log: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/out/Logs_Intermediates/Gis/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780022994590_299562.log: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/47/7048523db33133d0950745cd545049/SampleAnalysisResults/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_SARJeantLog-20260529033041.log: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529010131.log: Copied (new)
2026/05/29 18:38:20 INFO  : Logs_Intermediates/DnaDragenCaller/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna/1029_W0T-T1-TDNA-1_HLNMCDRX7_1_dna.bam: Multi-thread Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/57/a3d58938a2d331611adad71f76d894/.command.out: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/6f/b930658282982f0e69c2687dcf8299/.command.begin: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780017834680_117083.log: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780023307457_310316.log: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1267_CH-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780023307449_310316.log: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/6f/b930658282982f0e69c2687dcf8299/.command.err: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780017834695_117083.log: Copied (new)
2026/05/29 18:38:20 INFO  : Logs_Intermediates/FastqGeneration/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna_S22_L002_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/6f/b930658282982f0e69c2687dcf8299/.exitcode: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/10/3538dbd7a329f1f6303aebdd5436df/.command.err: Copied (new)
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2026/05/29 18:38:20 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/10/3538dbd7a329f1f6303aebdd5436df/.command.log: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/6f/b930658282982f0e69c2687dcf8299/.command.run: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/6f/b930658282982f0e69c2687dcf8299/.command.sh: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/10/3538dbd7a329f1f6303aebdd5436df/.command.out: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/10/3538dbd7a329f1f6303aebdd5436df/.command.run: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/10/3538dbd7a329f1f6303aebdd5436df/.command.sh: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0f/404f1961217b696ece3b80b669aed6/.command.err: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0f/404f1961217b696ece3b80b669aed6/.command.out: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0f/404f1961217b696ece3b80b669aed6/.command.log: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/57/90d8867c138f8afccc9381b6a6607e/.command.begin: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0f/404f1961217b696ece3b80b669aed6/.command.run: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0f/404f1961217b696ece3b80b669aed6/.command.sh: Copied (new)
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2026/05/29 18:38:20 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/57/90d8867c138f8afccc9381b6a6607e/.command.err: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/57/90d8867c138f8afccc9381b6a6607e/.exitcode: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/57/90d8867c138f8afccc9381b6a6607e/.command.run: Copied (new)
2026/05/29 18:38:20 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/57/90d8867c138f8afccc9381b6a6607e/.command.sh: Copied (new)
2026/05/29 18:38:21 INFO  : ica_logs/out/Logs_Intermediates/DnaCoverageReports/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/05/29 18:38:21 INFO  : Logs_Intermediates/FastqGeneration/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna_S26_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:38:21 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/56/27092a1c1ecfdd47532e88effdc8ef/.command.begin: Copied (new)
2026/05/29 18:38:21 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/57/90d8867c138f8afccc9381b6a6607e/.command.trace: Copied (new)
2026/05/29 18:38:21 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529025719.log: Copied (new)
2026/05/29 18:38:21 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/56/27092a1c1ecfdd47532e88effdc8ef/.command.err: Copied (new)
2026/05/29 18:38:21 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/56/27092a1c1ecfdd47532e88effdc8ef/.command.out: Copied (new)
2026/05/29 18:38:21 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/56/27092a1c1ecfdd47532e88effdc8ef/.command.log: Copied (new)
2026/05/29 18:38:21 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/56/27092a1c1ecfdd47532e88effdc8ef/.command.sh: Copied (new)
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2026/05/29 18:38:22 INFO  : Logs_Intermediates/FastqGeneration/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna_S22_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:38:22 INFO  : Logs_Intermediates/nextflow_work_logs/32/b6533855af95da401ec9337e079773/.command.err: Copied (new)
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2026/05/29 18:38:22 INFO  : Logs_Intermediates/nextflow_work_logs/32/b6533855af95da401ec9337e079773/.command.out: Copied (new)
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2026/05/29 18:38:22 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/57/6345e7dd7033b496ce2b8d67fe3384/.command.begin: Copied (new)
2026/05/29 18:38:22 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/57/6345e7dd7033b496ce2b8d67fe3384/.command.err: Copied (new)
2026/05/29 18:38:22 INFO  : Logs_Intermediates/nextflow_work_logs/32/b6533855af95da401ec9337e079773/.command.log: Copied (new)
2026/05/29 18:38:22 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/57/6345e7dd7033b496ce2b8d67fe3384/.command.out: Copied (new)
2026/05/29 18:38:22 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/57/6345e7dd7033b496ce2b8d67fe3384/.command.log: Copied (new)
2026/05/29 18:38:22 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/57/6345e7dd7033b496ce2b8d67fe3384/.exitcode: Copied (new)
2026/05/29 18:38:22 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/57/6345e7dd7033b496ce2b8d67fe3384/.command.sh: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/57/6345e7dd7033b496ce2b8d67fe3384/.command.trace: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529023722.log: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/73/fc0f6017d13bdf2ee70fc67ca188e9/.command.begin: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/73/fc0f6017d13bdf2ee70fc67ca188e9/.command.err: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/out/Logs_Intermediates/Gis/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780020979646_237243.log: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/57/6345e7dd7033b496ce2b8d67fe3384/.command.run: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/73/fc0f6017d13bdf2ee70fc67ca188e9/.command.log: Copied (new)
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2026/05/29 18:38:23 INFO  : ica_logs/out/Logs_Intermediates/Gis/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780020979639_237243.log: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/73/fc0f6017d13bdf2ee70fc67ca188e9/.command.out: Copied (new)
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2026/05/29 18:38:23 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/73/fc0f6017d13bdf2ee70fc67ca188e9/.exitcode: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/5e/74df251a5fea648ff0c7708a6e3c68/.command.err: Copied (new)
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2026/05/29 18:38:23 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/5e/74df251a5fea648ff0c7708a6e3c68/.command.out: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/73/fc0f6017d13bdf2ee70fc67ca188e9/.command.trace: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/73/fc0f6017d13bdf2ee70fc67ca188e9/.command.run: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/5e/74df251a5fea648ff0c7708a6e3c68/.command.begin: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/5e/74df251a5fea648ff0c7708a6e3c68/.command.sh: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/5e/74df251a5fea648ff0c7708a6e3c68/.command.trace: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/5e/74df251a5fea648ff0c7708a6e3c68/.command.run: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/5e/74df251a5fea648ff0c7708a6e3c68/.exitcode: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/74/a2d7f4670e71d5a2eba00737275145/.command.begin: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/74/a2d7f4670e71d5a2eba00737275145/.command.err: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/74/a2d7f4670e71d5a2eba00737275145/.command.run: Copied (new)
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2026/05/29 18:38:23 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/74/a2d7f4670e71d5a2eba00737275145/.exitcode: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/74/a2d7f4670e71d5a2eba00737275145/.command.trace: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/5b/dab20f9cb53c3b0b08c88490616989/.command.err: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/5b/dab20f9cb53c3b0b08c88490616989/.command.begin: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/74/a2d7f4670e71d5a2eba00737275145/.command.sh: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/5b/dab20f9cb53c3b0b08c88490616989/.command.log: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/5b/dab20f9cb53c3b0b08c88490616989/.exitcode: Copied (new)
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2026/05/29 18:38:23 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/5b/dab20f9cb53c3b0b08c88490616989/.command.run: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/5b/dab20f9cb53c3b0b08c88490616989/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/5b/dab20f9cb53c3b0b08c88490616989/.command.out: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/74/a2d7f4670e71d5a2eba00737275145/.command.log: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/74/a2d7f4670e71d5a2eba00737275145/.command.out: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/12/6e3dadc7c33cf324d403a46ef72b47/.command.run: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/12/6e3dadc7c33cf324d403a46ef72b47/.command.err: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529004305.log: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/12/6e3dadc7c33cf324d403a46ef72b47/.command.sh: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/12/6e3dadc7c33cf324d403a46ef72b47/.command.log: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780024138964_316260.log: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/12/6e3dadc7c33cf324d403a46ef72b47/.command.out: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780024138972_316260.log: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/5b/dab20f9cb53c3b0b08c88490616989/.command.trace: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529023722.log: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780018406199_132977.log: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0c/e89aa708758a3c61c8275ac36eb440/.command.log: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0c/e89aa708758a3c61c8275ac36eb440/.command.err: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780021934950_268566.log: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0c/e89aa708758a3c61c8275ac36eb440/.command.sh: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0c/e89aa708758a3c61c8275ac36eb440/.command.run: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/53/17cce53856fab8eee3cae12feca9ff/.command.begin: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0c/e89aa708758a3c61c8275ac36eb440/.command.out: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/53/17cce53856fab8eee3cae12feca9ff/.command.err: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780018406215_132977.log: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/53/17cce53856fab8eee3cae12feca9ff/.command.out: Copied (new)
2026/05/29 18:38:23 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/53/17cce53856fab8eee3cae12feca9ff/.command.log: Copied (new)
2026/05/29 18:38:24 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/53/17cce53856fab8eee3cae12feca9ff/.exitcode: Copied (new)
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2026/05/29 18:38:24 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/53/17cce53856fab8eee3cae12feca9ff/.command.sh: Copied (new)
2026/05/29 18:38:24 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/53/17cce53856fab8eee3cae12feca9ff/.command.run: Copied (new)
2026/05/29 18:38:24 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/4a/f744bb3b3cceb109aad5671f96924f/.command.begin: Copied (new)
2026/05/29 18:38:24 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780021934942_268566.log: Copied (new)
2026/05/29 18:38:24 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/4a/f744bb3b3cceb109aad5671f96924f/.command.err: Copied (new)
2026/05/29 18:38:24 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/4a/f744bb3b3cceb109aad5671f96924f/.command.out: Copied (new)
2026/05/29 18:38:24 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/4a/f744bb3b3cceb109aad5671f96924f/.command.run: Copied (new)
2026/05/29 18:38:24 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/4a/f744bb3b3cceb109aad5671f96924f/.command.log: Copied (new)
2026/05/29 18:38:24 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/4a/f744bb3b3cceb109aad5671f96924f/.command.sh: Copied (new)
2026/05/29 18:38:24 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/53/17cce53856fab8eee3cae12feca9ff/Nirvana-20260529010911.log: Copied (new)
2026/05/29 18:38:24 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/4a/f744bb3b3cceb109aad5671f96924f/.command.trace: Copied (new)
2026/05/29 18:38:24 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/4a/f744bb3b3cceb109aad5671f96924f/1029_BMEZ-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:38:24 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/4a/f744bb3b3cceb109aad5671f96924f/.exitcode: Copied (new)
2026/05/29 18:38:24 INFO  : Logs_Intermediates/nextflow_work_logs/35/cc86cdfa62d3e3636de20f51ea6387/.command.err: Copied (new)
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2026/05/29 18:38:24 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529023721.log: Copied (new)
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2026/05/29 18:38:24 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/75/724be1ca6049d8c96b7e5d95011aa5/.command.run: Copied (new)
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2026/05/29 18:38:24 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/61/edc0256439889ef7701e70a9ac06e0/.command.begin: Copied (new)
2026/05/29 18:38:24 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/61/edc0256439889ef7701e70a9ac06e0/.command.err: Copied (new)
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2026/05/29 18:38:24 INFO  : ica_logs/out/Logs_Intermediates/Gis/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780021700354_262047.log: Copied (new)
2026/05/29 18:38:24 INFO  : ica_logs/out/Logs_Intermediates/Gis/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780021700347_262047.log: Copied (new)
2026/05/29 18:38:24 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/61/edc0256439889ef7701e70a9ac06e0/.exitcode: Copied (new)
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2026/05/29 18:38:24 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/61/edc0256439889ef7701e70a9ac06e0/.command.trace: Copied (new)
2026/05/29 18:38:24 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/13/843af8bae56f73fa866fffd74daca5/.command.err: Copied (new)
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2026/05/29 18:38:24 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/61/edc0256439889ef7701e70a9ac06e0/.command.out: Copied (new)
2026/05/29 18:38:24 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/61/edc0256439889ef7701e70a9ac06e0/.command.run: Copied (new)
2026/05/29 18:38:24 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/66/74f959a74eb7963ce9bf938098fd61/.command.log: Copied (new)
2026/05/29 18:38:24 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/48/93af6959ce3c34c82fdda36bdcc715/DnaDragenExonCnvCaller/dragen_syslog_1780022063276_269224.log: Copied (new)
2026/05/29 18:38:24 INFO  : Logs_Intermediates/FastqGeneration/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna_S26_L002_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:38:24 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/13/843af8bae56f73fa866fffd74daca5/.command.out: Copied (new)
2026/05/29 18:38:24 INFO  : Logs_Intermediates/nextflow_work_logs/36/142bfcfcc65d64faffc904d4c4ff8e/.command.err: Copied (new)
2026/05/29 18:38:24 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/13/843af8bae56f73fa866fffd74daca5/.command.log: Copied (new)
2026/05/29 18:38:24 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/57/a3d58938a2d331611adad71f76d894/DnaDragenExonCnvCaller/dragen_syslog_1780023359284_293173.log: Copied (new)
2026/05/29 18:38:24 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529023721.log: Copied (new)
2026/05/29 18:38:24 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/13/843af8bae56f73fa866fffd74daca5/.command.run: Copied (new)
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2026/05/29 18:38:24 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/13/843af8bae56f73fa866fffd74daca5/.command.sh: Copied (new)
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2026/05/29 18:38:24 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529005222.log: Copied (new)
2026/05/29 18:38:24 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/5d/3a30d97c0a3b42f309e21a6f17beea/.command.trace: Copied (new)
2026/05/29 18:38:24 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/5d/3a30d97c0a3b42f309e21a6f17beea/.command.err: Copied (new)
2026/05/29 18:38:25 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780023246623_307318.log: Copied (new)
2026/05/29 18:38:25 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/5d/3a30d97c0a3b42f309e21a6f17beea/.command.run: Copied (new)
2026/05/29 18:38:25 INFO  : Logs_Intermediates/DnaDragenCaller/1047_MH-T1-TDNA-1_HLNMCDRX7_1_dna/1047_MH-T1-TDNA-1_HLNMCDRX7_1_dna.bam: Multi-thread Copied (new)
2026/05/29 18:38:25 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780023246633_307318.log: Copied (new)
2026/05/29 18:38:25 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/5d/3a30d97c0a3b42f309e21a6f17beea/.command.sh: Copied (new)
2026/05/29 18:38:25 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/5d/3a30d97c0a3b42f309e21a6f17beea/.exitcode: Copied (new)
2026/05/29 18:38:25 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/5a/bc056df0053e3f496697ddb17cbbc9/.command.begin: Copied (new)
2026/05/29 18:38:25 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/5d/3a30d97c0a3b42f309e21a6f17beea/.command.log: Copied (new)
2026/05/29 18:38:25 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/5a/bc056df0053e3f496697ddb17cbbc9/.command.err: Copied (new)
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2026/05/29 18:38:25 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/5a/bc056df0053e3f496697ddb17cbbc9/gen_coverage_reports.log: Copied (new)
2026/05/29 18:38:25 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/61/cb63b603b6db1a99c8ecfe1d5b8178/.command.out: Copied (new)
2026/05/29 18:38:25 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/61/cb63b603b6db1a99c8ecfe1d5b8178/.command.log: Copied (new)
2026/05/29 18:38:25 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/5a/bc056df0053e3f496697ddb17cbbc9/.command.trace: Copied (new)
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2026/05/29 18:38:25 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/61/cb63b603b6db1a99c8ecfe1d5b8178/.exitcode: Copied (new)
2026/05/29 18:38:25 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/61/cb63b603b6db1a99c8ecfe1d5b8178/.command.sh: Copied (new)
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2026/05/29 18:38:25 INFO  : Logs_Intermediates/nextflow_work_logs/35/ed9e849731a1fb3e655c145094047a/.command.env: Copied (new)
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2026/05/29 18:38:25 INFO  : Logs_Intermediates/nextflow_work_logs/35/ed9e849731a1fb3e655c145094047a/.command.log: Copied (new)
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2026/05/29 18:38:25 INFO  : Logs_Intermediates/nextflow_work_logs/35/ed9e849731a1fb3e655c145094047a/.command.run: Copied (new)
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2026/05/29 18:38:25 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529023723.log: Copied (new)
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2026/05/29 18:38:25 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/78/8b4547ded07d27e03bc2572b6e97c1/.command.begin: Copied (new)
2026/05/29 18:38:25 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/58/3d087c058f36291857409aeed09090/DnaDragenCaller/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
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2026/05/29 18:38:25 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/78/8b4547ded07d27e03bc2572b6e97c1/.command.out: Copied (new)
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2026/05/29 18:38:25 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/78/8b4547ded07d27e03bc2572b6e97c1/.command.sh: Copied (new)
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2026/05/29 18:38:25 INFO  : ica_logs/out/Logs_Intermediates/Gis/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780020685261_226497.log: Copied (new)
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2026/05/29 18:38:25 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/13/bacb64b3fa9b6abcf790dfb7c6ddeb/.command.err: Copied (new)
2026/05/29 18:38:25 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/13/bacb64b3fa9b6abcf790dfb7c6ddeb/.command.out: Copied (new)
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2026/05/29 18:38:25 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/13/bacb64b3fa9b6abcf790dfb7c6ddeb/.command.sh: Copied (new)
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2026/05/29 18:38:26 INFO  : Logs_Intermediates/nextflow_work_logs/37/a5610682b8cbcae13b1d2e48f96d38/.command.out: Copied (new)
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2026/05/29 18:38:26 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/5d/e8e5428e1c059749ac25ed1c86a587/.exitcode: Copied (new)
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2026/05/29 18:38:26 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/5d/e8e5428e1c059749ac25ed1c86a587/.command.sh: Copied (new)
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2026/05/29 18:38:26 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/63/cae376e9856c6103e4969e0d58488a/.command.err: Copied (new)
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2026/05/29 18:38:26 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/63/cae376e9856c6103e4969e0d58488a/.command.out: Copied (new)
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2026/05/29 18:38:26 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/63/cae376e9856c6103e4969e0d58488a/.command.run: Copied (new)
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2026/05/29 18:38:26 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/61/fcc3b7a8e25d7945f9f273ea23ffb2/.command.begin: Copied (new)
2026/05/29 18:38:26 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/63/cae376e9856c6103e4969e0d58488a/.command.sh: Copied (new)
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2026/05/29 18:38:26 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/61/fcc3b7a8e25d7945f9f273ea23ffb2/.command.run: Copied (new)
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2026/05/29 18:38:26 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/61/fcc3b7a8e25d7945f9f273ea23ffb2/.command.out: Copied (new)
2026/05/29 18:38:26 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/61/fcc3b7a8e25d7945f9f273ea23ffb2/.exitcode: Copied (new)
2026/05/29 18:38:26 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/61/fcc3b7a8e25d7945f9f273ea23ffb2/.command.trace: Copied (new)
2026/05/29 18:38:26 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/5a/ae9ff331cb51ffb6857cfc4e8d3ed2/Gis/dragen_run_1780022238981_273829.log: Copied (new)
2026/05/29 18:38:26 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/62/3dfbeaf98eefac1e25291d6a2bd276/.command.begin: Copied (new)
2026/05/29 18:38:26 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/62/3dfbeaf98eefac1e25291d6a2bd276/.command.err: Copied (new)
2026/05/29 18:38:26 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/62/3dfbeaf98eefac1e25291d6a2bd276/.command.log: Copied (new)
2026/05/29 18:38:26 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/62/3dfbeaf98eefac1e25291d6a2bd276/.command.sh: Copied (new)
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2026/05/29 18:38:26 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/62/3dfbeaf98eefac1e25291d6a2bd276/.exitcode: Copied (new)
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2026/05/29 18:38:26 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529023722.log: Copied (new)
2026/05/29 18:38:26 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/5a/dc8e23148381f2bf2df16ee8c03569/.command.log: Copied (new)
2026/05/29 18:38:26 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/5a/dc8e23148381f2bf2df16ee8c03569/.command.out: Copied (new)
2026/05/29 18:38:26 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/5a/dc8e23148381f2bf2df16ee8c03569/.exitcode: Copied (new)
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2026/05/29 18:38:26 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/5a/dc8e23148381f2bf2df16ee8c03569/.command.run: Copied (new)
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2026/05/29 18:38:26 INFO  : Logs_Intermediates/nextflow_work_logs/35/fffa8e78b1ac1f6e7fe614b4b9a6f6/.command.err: Copied (new)
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2026/05/29 18:38:26 INFO  : Logs_Intermediates/nextflow_work_logs/35/fffa8e78b1ac1f6e7fe614b4b9a6f6/.command.out: Copied (new)
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2026/05/29 18:38:26 INFO  : Logs_Intermediates/nextflow_work_logs/35/fffa8e78b1ac1f6e7fe614b4b9a6f6/.command.log: Copied (new)
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2026/05/29 18:38:26 INFO  : Logs_Intermediates/nextflow_work_logs/35/fffa8e78b1ac1f6e7fe614b4b9a6f6/.command.sh: Copied (new)
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2026/05/29 18:38:26 INFO  : Logs_Intermediates/nextflow_work_logs/35/fffa8e78b1ac1f6e7fe614b4b9a6f6/.command.run: Copied (new)
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2026/05/29 18:38:26 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/78/c62d95c70ccfd0a6185c53e5ad7a02/.command.env: Copied (new)
2026/05/29 18:38:26 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/78/c62d95c70ccfd0a6185c53e5ad7a02/.command.err: Copied (new)
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2026/05/29 18:38:26 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/78/c62d95c70ccfd0a6185c53e5ad7a02/.exitcode: Copied (new)
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2026/05/29 18:38:26 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/78/c62d95c70ccfd0a6185c53e5ad7a02/.command.trace: Copied (new)
2026/05/29 18:38:26 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/14/cb9368643fbcae18ea0088d17c1c18/.command.err: Copied (new)
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2026/05/29 18:38:26 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/5c/7d3b0fc36701d1f576c1454b7ad30d/.command.begin: Copied (new)
2026/05/29 18:38:26 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/14/cb9368643fbcae18ea0088d17c1c18/.command.out: Copied (new)
2026/05/29 18:38:26 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/14/cb9368643fbcae18ea0088d17c1c18/.command.sh: Copied (new)
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2026/05/29 18:38:26 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/14/cb9368643fbcae18ea0088d17c1c18/.command.log: Copied (new)
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2026/05/29 18:38:26 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/14/cb9368643fbcae18ea0088d17c1c18/.command.run: Copied (new)
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2026/05/29 18:38:26 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/5d/5bade02fd88c3ff2cdcab8b2863a3c/.command.sh: Copied (new)
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2026/05/29 18:38:26 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529023720.log: Copied (new)
2026/05/29 18:38:26 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/62/a116fed9b41b44334014483994174e/.command.err: Copied (new)
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2026/05/29 18:38:27 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/63/b450849ce7bdcc4f3834bcf2cd8085/.command.log: Copied (new)
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2026/05/29 18:38:27 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/63/b450849ce7bdcc4f3834bcf2cd8085/.exitcode: Copied (new)
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2026/05/29 18:38:27 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/74/a2d7f4670e71d5a2eba00737275145/SampleAnalysisResults/659_pO-T1-TDNA-1_HLNMCDRX7_1_SARJeantLog-20260529032819.log: Copied (new)
2026/05/29 18:38:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/16/266bcc06194c74f7894648fdf107f1/.command.err: Copied (new)
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2026/05/29 18:38:27 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/60/fd34fb6d8e3a21bf84b8871f9d5084/.command.err: Copied (new)
2026/05/29 18:38:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/16/266bcc06194c74f7894648fdf107f1/.command.sh: Copied (new)
2026/05/29 18:38:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/16/266bcc06194c74f7894648fdf107f1/.command.run: Copied (new)
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2026/05/29 18:38:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/16/266bcc06194c74f7894648fdf107f1/.command.log: Copied (new)
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2026/05/29 18:38:27 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529023724.log: Copied (new)
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2026/05/29 18:38:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/16/266bcc06194c74f7894648fdf107f1/.command.out: Copied (new)
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2026/05/29 18:38:27 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/79/48c9a8b3816601f7b3c0c23b50a9c7/.command.err: Copied (new)
2026/05/29 18:38:27 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/4a/f744bb3b3cceb109aad5671f96924f/Contamination/Spoiler-20260529030617.log: Copied (new)
2026/05/29 18:38:27 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/60/fd34fb6d8e3a21bf84b8871f9d5084/.command.run: Copied (new)
2026/05/29 18:38:27 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/60/fd34fb6d8e3a21bf84b8871f9d5084/.command.log: Copied (new)
2026/05/29 18:38:27 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/60/fd34fb6d8e3a21bf84b8871f9d5084/.exitcode: Copied (new)
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2026/05/29 18:38:27 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/60/fd34fb6d8e3a21bf84b8871f9d5084/.command.trace: Copied (new)
2026/05/29 18:38:27 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/79/198dc66b6944bf5a25b4b4ac4408fe/.command.begin: Copied (new)
2026/05/29 18:38:27 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/79/48c9a8b3816601f7b3c0c23b50a9c7/.exitcode: Copied (new)
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2026/05/29 18:38:27 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/79/198dc66b6944bf5a25b4b4ac4408fe/.command.out: Copied (new)
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2026/05/29 18:38:27 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/79/198dc66b6944bf5a25b4b4ac4408fe/.command.run: Copied (new)
2026/05/29 18:38:27 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/79/198dc66b6944bf5a25b4b4ac4408fe/.exitcode: Copied (new)
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2026/05/29 18:38:27 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529004414.log: Copied (new)
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2026/05/29 18:38:27 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780023214100_305817.log: Copied (new)
2026/05/29 18:38:27 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/79/48c9a8b3816601f7b3c0c23b50a9c7/.command.run: Copied (new)
2026/05/29 18:38:27 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/80/71c49c880311ee1751b8584c56a472/.command.begin: Copied (new)
2026/05/29 18:38:27 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/80/71c49c880311ee1751b8584c56a472/.command.err: Copied (new)
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2026/05/29 18:38:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/17/1c5dc01608e7ff3f3a37ce8bd6c500/.command.err: Copied (new)
2026/05/29 18:38:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/17/1c5dc01608e7ff3f3a37ce8bd6c500/.command.out: Copied (new)
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2026/05/29 18:38:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/17/1c5dc01608e7ff3f3a37ce8bd6c500/.command.run: Copied (new)
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2026/05/29 18:38:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/17/1c5dc01608e7ff3f3a37ce8bd6c500/.command.log: Copied (new)
2026/05/29 18:38:27 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/68/64f7c9d01f72126d45f14b02637315/.command.begin: Copied (new)
2026/05/29 18:38:27 INFO  : Logs_Intermediates/nextflow_work_logs/38/856c54cf30c499672b7921d123a746/.command.out: Copied (new)
2026/05/29 18:38:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/17/1c5dc01608e7ff3f3a37ce8bd6c500/.command.sh: Copied (new)
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2026/05/29 18:38:28 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/LrCalculator-20260529023723.log: Copied (new)
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2026/05/29 18:38:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/16/289ac6a91fce699c147acdc7f213ee/.command.err: Copied (new)
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2026/05/29 18:38:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/16/289ac6a91fce699c147acdc7f213ee/.command.run: Copied (new)
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2026/05/29 18:38:28 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/74/58184705b5c99d20d512cc959c25d5/.command.err: Copied (new)
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2026/05/29 18:38:28 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/87/8bc5eb5743027a21a9527ad2d5f110/.command.begin: Copied (new)
2026/05/29 18:38:28 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/74/58184705b5c99d20d512cc959c25d5/.exitcode: Copied (new)
2026/05/29 18:38:28 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/74/58184705b5c99d20d512cc959c25d5/.command.run: Copied (new)
2026/05/29 18:38:28 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/87/8bc5eb5743027a21a9527ad2d5f110/.command.env: Copied (new)
2026/05/29 18:38:28 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/87/8bc5eb5743027a21a9527ad2d5f110/.command.err: Copied (new)
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2026/05/29 18:38:28 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/87/8bc5eb5743027a21a9527ad2d5f110/.command.out: Copied (new)
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2026/05/29 18:38:28 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/87/8bc5eb5743027a21a9527ad2d5f110/.command.log: Copied (new)
2026/05/29 18:38:28 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/87/8bc5eb5743027a21a9527ad2d5f110/.exitcode: Copied (new)
2026/05/29 18:38:28 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/80/eca63032c855ae746d66337145809d/.command.begin: Copied (new)
2026/05/29 18:38:28 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/87/8bc5eb5743027a21a9527ad2d5f110/.command.sh: Copied (new)
2026/05/29 18:38:28 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/80/eca63032c855ae746d66337145809d/.command.err: Copied (new)
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2026/05/29 18:38:28 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/87/8bc5eb5743027a21a9527ad2d5f110/.command.trace: Copied (new)
2026/05/29 18:38:28 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/80/eca63032c855ae746d66337145809d/.exitcode: Copied (new)
2026/05/29 18:38:28 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529012004.log: Copied (new)
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2026/05/29 18:38:28 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780023369171_313394.log: Copied (new)
2026/05/29 18:38:28 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/80/eca63032c855ae746d66337145809d/.command.trace: Copied (new)
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2026/05/29 18:38:28 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/5d/3a30d97c0a3b42f309e21a6f17beea/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:38:28 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780023369164_313394.log: Copied (new)
2026/05/29 18:38:28 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/5d/3a30d97c0a3b42f309e21a6f17beea/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:38:28 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/69/34aa9f584066ab86f892d138f65066/.command.begin: Copied (new)
2026/05/29 18:38:28 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/69/34aa9f584066ab86f892d138f65066/.command.err: Copied (new)
2026/05/29 18:38:28 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/69/34aa9f584066ab86f892d138f65066/.command.run: Copied (new)
2026/05/29 18:38:28 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/69/34aa9f584066ab86f892d138f65066/.command.log: Copied (new)
2026/05/29 18:38:28 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/69/34aa9f584066ab86f892d138f65066/.command.out: Copied (new)
2026/05/29 18:38:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/17/408d5a3745871c9d14f9d398155015/.command.env: Copied (new)
2026/05/29 18:38:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/17/408d5a3745871c9d14f9d398155015/.command.err: Copied (new)
2026/05/29 18:38:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/17/408d5a3745871c9d14f9d398155015/.command.out: Copied (new)
2026/05/29 18:38:28 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/69/34aa9f584066ab86f892d138f65066/.exitcode: Copied (new)
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2026/05/29 18:38:29 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/17/408d5a3745871c9d14f9d398155015/.command.log: Copied (new)
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2026/05/29 18:38:29 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/17/408d5a3745871c9d14f9d398155015/.command.run: Copied (new)
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2026/05/29 18:38:29 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/17/408d5a3745871c9d14f9d398155015/.command.sh: Copied (new)
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2026/05/29 18:38:29 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/16/9505936ec9d4b1c8d8571104cf3c92/.command.log: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/16/9505936ec9d4b1c8d8571104cf3c92/.command.out: Copied (new)
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2026/05/29 18:38:29 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/18/102da086e8fea6e2fbc4db44200c08/.command.err: Copied (new)
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2026/05/29 18:38:29 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/16/9505936ec9d4b1c8d8571104cf3c92/.command.err: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/18/102da086e8fea6e2fbc4db44200c08/.command.log: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/18/102da086e8fea6e2fbc4db44200c08/.command.out: Copied (new)
2026/05/29 18:38:29 INFO  : Logs_Intermediates/FastqGeneration/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna_S1_L002_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/6e/cfb0096d355c6cfed003905f467b43/.command.begin: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/18/102da086e8fea6e2fbc4db44200c08/.command.run: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/6e/cfb0096d355c6cfed003905f467b43/.command.err: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/6e/cfb0096d355c6cfed003905f467b43/.exitcode: Copied (new)
2026/05/29 18:38:29 INFO  : 
Transferred:   	  302.587 GiB / 383.137 GiB, 79%, 1.318 GiB/s, ETA 1m1s
Transferred:         8461 / 14458, 59%
Elapsed time:      3m30.0s
Transferring:
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 97% /4.499Gi, 25.313Mi/s, 3s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 70% /5.954Gi, 24.753Mi/s, 1m13s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 75% /4.890Gi, 22.372Mi/s, 55s
 * Logs_Intermediates/Fas…6_L002_R1_001.fastq.gz: 99% /3.640Gi, 24.549Mi/s, 1s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 39% /8.846Gi, 22.764Mi/s, 4m1s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 80% /4.210Gi, 26.662Mi/s, 32s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 76% /4.068Gi, 27.299Mi/s, 35s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 66% /4.417Gi, 30.293Mi/s, 50s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 89% /3.346Gi, 28.997Mi/s, 12s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 71% /3.864Gi, 31.146Mi/s, 35s
 * Logs_Intermediates/Fas…5_L001_R1_001.fastq.gz: 54% /4.295Gi, 22.127Mi/s, 1m30s
 * Logs_Intermediates/Fas…5_L001_R2_001.fastq.gz: 63% /4.458Gi, 26.872Mi/s, 1m2s
 * Logs_Intermediates/Fas…5_L002_R1_001.fastq.gz: 62% /4.151Gi, 29.616Mi/s, 53s
 * Logs_Intermediates/Fas…5_L002_R2_001.fastq.gz: 57% /4.316Gi, 23.893Mi/s, 1m17s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 17% /11.062Gi, 24.330Mi/s, 6m22s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 49% /4.656Gi, 31.129Mi/s, 1m17s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 38% /4.686Gi, 24.367Mi/s, 2m0s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 42% /4.249Gi, 25.462Mi/s, 1m37s
 * Logs_Intermediates/Fas…1_L001_R1_001.fastq.gz: 95% /1.417Gi, 16.772Mi/s, 3s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 37% /4.057Gi, 26.484Mi/s, 1m37s
 * Logs_Intermediates/Fas…2_L001_R1_001.fastq.gz: 97% /1.360Gi, 23.242Mi/s, 1s
 * Logs_Intermediates/Fas…2_L002_R1_001.fastq.gz: 94% /1.327Gi, 24.174Mi/s, 3s
 * Logs_Intermediates/Fas…2_L002_R2_001.fastq.gz: 95% /1.364Gi, 27.007Mi/s, 2s
 * Logs_Intermediates/Fas…3_L001_R1_001.fastq.gz: 86% /1.697Gi, 35.919Mi/s, 6s
 * Logs_Intermediates/Fas…3_L001_R2_001.fastq.gz: 90% /1.756Gi, 37.111Mi/s, 4s
 * Logs_Intermediates/Fas…3_L002_R1_001.fastq.gz: 83% /1.666Gi, 29.906Mi/s, 9s
 * Logs_Intermediates/Fas…3_L002_R2_001.fastq.gz: 81% /1.726Gi, 32.231Mi/s, 10s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 25% /3.690Gi, 22.676Mi/s, 2m4s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 23% /4.691Gi, 28.757Mi/s, 2m8s
 * Logs_Intermediates/Fas…4_L001_R1_001.fastq.gz: 88% /1.307Gi, 38.014Mi/s, 4s
 * Logs_Intermediates/Fas…4_L001_R2_001.fastq.gz: 57% /1.295Gi, 21.016Mi/s, 26s
 * Logs_Intermediates/Fas…4_L002_R1_001.fastq.gz: 65% /1.279Gi, 25.327Mi/s, 17s
 * Logs_Intermediates/Fas…4_L002_R2_001.fastq.gz: 73% /1.269Gi, 26.361Mi/s, 12s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 25% /3.064Gi, 28.064Mi/s, 1m23s
 * Logs_Intermediates/Fas…0_L001_R1_001.fastq.gz:  5% /6.862Gi, 23.094Mi/s, 4m46s
 * Logs_Intermediates/Fas…0_L001_R2_001.fastq.gz:  6% /7.043Gi, 26.916Mi/s, 4m10s
 * Logs_Intermediates/Fas…0_L002_R1_001.fastq.gz:  7% /6.909Gi, 28.484Mi/s, 3m50s
 * Logs_Intermediates/Fas…0_L002_R2_001.fastq.gz:  5% /7.096Gi, 21.328Mi/s, 5m22s
 * ica_logs/work/c6/f7cdd…285e86c43/.command.log: 50% /68.888Mi, 2.538Mi/s, 13s
 * ica_logs/work/c6/f7cdd…285e86c43/.command.out: 89% /68.887Mi, 4.615Mi/s, 1s
 * ica_logs/work/c6/f7cdd…87dcf8299/.command.log: 67% /61.813Mi, 4.875Mi/s, 4s
 * ica_logs/work/c6/f7cdd…87dcf8299/.command.out: 35% /61.813Mi, 2.375Mi/s, 16s
 * ica_logs/work/c6/f7cdd…Log-20260529032941.log: 45% /68.796Mi, 5.799Mi/s, 6s
 * ica_logs/work/c6/f7cdd…d95011aa5/.command.log: 87% /70.601Mi, 12.749Mi/s, 0s
 * ica_logs/work/c6/f7cdd…Log-20260529032909.log: 50% /61.703Mi, 7.499Mi/s, 4s
 * ica_logs/work/c6/f7cdd…23b50a9c7/.command.log: 64% /68.072Mi, 27.996Mi/s, 0s
 * ica_logs/work/c6/f7cdd…23b50a9c7/.command.out:  4% /68.072Mi, 1019.987Ki/s, 1m5s
 * ica_logs/work/c6/f7cdd…84c56a472/.command.log: 30% /79.505Mi, 14.996Mi/s, 3s
 * ica_logs/work/c6/f7cdd…84c56a472/.command.out: 11% /79.505Mi, 4.996Mi/s, 14s
 * ica_logs/work/c6/f7cdd…Log-20260529033012.log: 25% /70.489Mi, 12.996Mi/s, 4s
 * ica_logs/out/Logs_Inte…db44200c08/.command.sh: transferring
 * ica_logs/work/81/b8f61…05f467b43/.command.log:100% /98.061Ki, 0/s, -
 * ica_logs/work/81/b8f61…05f467b43/.command.out: transferring
 * ica_logs/work/81/b8f61…05f467b43/.command.run: transferring
 * ica_logs/work/81/b8f61…905f467b43/.command.sh:100% /4.494Ki, 0/s, -
 * ica_logs/work/81/b8f61…f467b43/.command.trace:100% /252, 0/s, -
 * ica_logs/work/81/b8f61…80022014186_273876.log: transferring
 * ica_logs/work/81/b8f61…80022014179_273876.log:100% /21.239Ki, 0/s, -
 * ica_logs/work/6e/f0048…08f216c/.command.begin:  0% /0, 0/s, -
 * ica_logs/work/6e/f0048…9c08f216c/.command.err: transferring
 * ica_logs/work/6e/f0048…9c08f216c/.command.log: transferring
 * ica_logs/work/6e/f0048…9c08f216c/.command.out: transferring
 * ica_logs/work/6e/f0048…9c08f216c/.command.run: transferring
 * ica_logs/work/6e/f0048…09c08f216c/.command.sh: transferring

2026/05/29 18:38:29 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/65/9ee9f7fc5b18c64fe50709c08f216c/.command.begin: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/6e/cfb0096d355c6cfed003905f467b43/.command.sh: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/6e/cfb0096d355c6cfed003905f467b43/.command.trace: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/6e/cfb0096d355c6cfed003905f467b43/.command.log: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/18/102da086e8fea6e2fbc4db44200c08/.command.sh: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/6e/cfb0096d355c6cfed003905f467b43/.command.out: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/61/fcc3b7a8e25d7945f9f273ea23ffb2/Tmb/dragen_run_1780022014186_273876.log: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/61/fcc3b7a8e25d7945f9f273ea23ffb2/Tmb/dragen_syslog_1780022014179_273876.log: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/6e/cfb0096d355c6cfed003905f467b43/.command.run: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/65/9ee9f7fc5b18c64fe50709c08f216c/.command.err: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/65/9ee9f7fc5b18c64fe50709c08f216c/.command.log: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/65/9ee9f7fc5b18c64fe50709c08f216c/.command.run: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/65/9ee9f7fc5b18c64fe50709c08f216c/.command.trace: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/65/9ee9f7fc5b18c64fe50709c08f216c/.command.out: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/4a/d8626b4d2c7d937ab741127e515fc9/DnaDragenCaller/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/4a/d8626b4d2c7d937ab741127e515fc9/DnaDragenCaller/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/65/9ee9f7fc5b18c64fe50709c08f216c/.exitcode: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529014747.log: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/65/9ee9f7fc5b18c64fe50709c08f216c/.command.sh: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780023433458_316841.log: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780023433450_316841.log: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/4a/d8626b4d2c7d937ab741127e515fc9/DnaDragenCaller/1029_BJND-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/69/6448aff3ab5ee24981ea3cf6fc6152/.command.err: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/69/6448aff3ab5ee24981ea3cf6fc6152/.command.begin: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/4a/d8626b4d2c7d937ab741127e515fc9/DnaDragenCaller/dragen_run_1780018092323_122882.log: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/69/6448aff3ab5ee24981ea3cf6fc6152/.exitcode: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/69/6448aff3ab5ee24981ea3cf6fc6152/.command.run: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/69/6448aff3ab5ee24981ea3cf6fc6152/.command.log: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/69/6448aff3ab5ee24981ea3cf6fc6152/.command.out: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/88/1e2c1f6d89ca0c46e47bf54d7c320d/.command.err: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/88/1e2c1f6d89ca0c46e47bf54d7c320d/.command.begin: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/62/3dfbeaf98eefac1e25291d6a2bd276/LrCalculator/LrCalculator-20260529023721.log: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/69/6448aff3ab5ee24981ea3cf6fc6152/.command.sh: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/69/6448aff3ab5ee24981ea3cf6fc6152/.command.trace: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/4a/d8626b4d2c7d937ab741127e515fc9/DnaDragenCaller/dragen_syslog_1780018092308_122882.log: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/88/1e2c1f6d89ca0c46e47bf54d7c320d/.command.run: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/88/1e2c1f6d89ca0c46e47bf54d7c320d/.exitcode: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/7a/9d1342254002b866000cbc50614c15/.command.begin: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/88/1e2c1f6d89ca0c46e47bf54d7c320d/.command.sh: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/7a/9d1342254002b866000cbc50614c15/.command.err: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/88/1e2c1f6d89ca0c46e47bf54d7c320d/.command.trace: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/7a/9d1342254002b866000cbc50614c15/.command.run: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/7a/9d1342254002b866000cbc50614c15/.command.sh: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/7a/9d1342254002b866000cbc50614c15/.command.log: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/7a/9d1342254002b866000cbc50614c15/.exitcode: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/7a/9d1342254002b866000cbc50614c15/.command.trace: Copied (new)
2026/05/29 18:38:29 INFO  : Logs_Intermediates/nextflow_work_logs/3b/ba0d2e84c30f43d1222c9c565277a8/.command.err: Copied (new)
2026/05/29 18:38:29 INFO  : Logs_Intermediates/nextflow_work_logs/3b/ba0d2e84c30f43d1222c9c565277a8/.command.run: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/6d/186651e67fba928e2ca1102093837b/.command.err: Copied (new)
2026/05/29 18:38:29 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/6d/186651e67fba928e2ca1102093837b/.command.begin: Copied (new)
2026/05/29 18:38:30 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/7a/9d1342254002b866000cbc50614c15/.command.out: Copied (new)
2026/05/29 18:38:30 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/75/724be1ca6049d8c96b7e5d95011aa5/.command.log: Copied (new)
2026/05/29 18:38:30 INFO  : Logs_Intermediates/nextflow_work_logs/3b/ba0d2e84c30f43d1222c9c565277a8/.command.log: Copied (new)
2026/05/29 18:38:30 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/6d/186651e67fba928e2ca1102093837b/.command.out: Copied (new)
2026/05/29 18:38:30 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/6d/186651e67fba928e2ca1102093837b/.command.log: Copied (new)
2026/05/29 18:38:30 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/6d/186651e67fba928e2ca1102093837b/.command.run: Copied (new)
2026/05/29 18:38:30 INFO  : Logs_Intermediates/nextflow_work_logs/3b/ba0d2e84c30f43d1222c9c565277a8/.command.sh: Copied (new)
2026/05/29 18:38:30 INFO  : Logs_Intermediates/nextflow_work_logs/3b/ba0d2e84c30f43d1222c9c565277a8/.command.out: Copied (new)
2026/05/29 18:38:30 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/6d/186651e67fba928e2ca1102093837b/.command.trace: Copied (new)
2026/05/29 18:38:30 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/6f/4ac281ffbd045fbb4e24c3dd8fbb7c/.command.begin: Copied (new)
2026/05/29 18:38:30 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/6d/186651e67fba928e2ca1102093837b/.exitcode: Copied (new)
2026/05/29 18:38:30 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/6d/186651e67fba928e2ca1102093837b/.command.sh: Copied (new)
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2026/05/29 18:38:30 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/18/ad0b666c44c990a2a9e677c535a1c3/.command.err: Copied (new)
2026/05/29 18:38:30 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/18/ad0b666c44c990a2a9e677c535a1c3/.command.log: Copied (new)
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2026/05/29 18:38:30 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780022166653_281533.log: Copied (new)
2026/05/29 18:38:30 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/68/0f234b895a8d0753d3275b09ad4460/.exitcode: Copied (new)
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2026/05/29 18:38:30 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/18/ad0b666c44c990a2a9e677c535a1c3/.command.sh: Copied (new)
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2026/05/29 18:38:30 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/88/f38f1269d11ae9eec21fc66856af1f/.exitcode: Copied (new)
2026/05/29 18:38:30 INFO  : Logs_Intermediates/nextflow_work_logs/3d/111a084c111a4d9805736ca90acd2f/.command.err: Copied (new)
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2026/05/29 18:38:30 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/19/0ea39208534f1b8e93b8285fffb793/.command.err: Copied (new)
2026/05/29 18:38:30 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/19/0ea39208534f1b8e93b8285fffb793/.command.out: Copied (new)
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2026/05/29 18:38:30 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/19/0ea39208534f1b8e93b8285fffb793/.command.run: Copied (new)
2026/05/29 18:38:30 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/19/0ea39208534f1b8e93b8285fffb793/.command.log: Copied (new)
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2026/05/29 18:38:30 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/8a/2c79054c31c2814ad2c2f47d3a298b/.command.begin: Copied (new)
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2026/05/29 18:38:30 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/8a/2c79054c31c2814ad2c2f47d3a298b/.command.sh: Copied (new)
2026/05/29 18:38:30 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/8a/2c79054c31c2814ad2c2f47d3a298b/.command.run: Copied (new)
2026/05/29 18:38:30 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/8a/2c79054c31c2814ad2c2f47d3a298b/.exitcode: Copied (new)
2026/05/29 18:38:30 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/7c/25e33cdded7621a6975279f2d9c5ae/.command.err: Copied (new)
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2026/05/29 18:38:30 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/7c/25e33cdded7621a6975279f2d9c5ae/.command.out: Copied (new)
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2026/05/29 18:38:30 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/7c/25e33cdded7621a6975279f2d9c5ae/.command.sh: Copied (new)
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2026/05/29 18:38:31 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/68/27e65dc55aea687425a34e31a937fb/.command.begin: Copied (new)
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2026/05/29 18:38:31 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/68/27e65dc55aea687425a34e31a937fb/.command.err: Copied (new)
2026/05/29 18:38:31 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/68/27e65dc55aea687425a34e31a937fb/.exitcode: Copied (new)
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2026/05/29 18:38:31 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/6e/1f8f744019a155a7b49c1543225ecc/.command.err: Copied (new)
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2026/05/29 18:38:31 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/6e/1f8f744019a155a7b49c1543225ecc/.command.log: Copied (new)
2026/05/29 18:38:31 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/6e/1f8f744019a155a7b49c1543225ecc/.command.run: Copied (new)
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2026/05/29 18:38:31 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/71/2b0d38e3a678d4c67ff74bc6336d6d/.exitcode: Copied (new)
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2026/05/29 18:38:31 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1e/f6e49180b922dc529879c862573bae/.command.err: Copied (new)
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2026/05/29 18:38:31 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1e/f6e49180b922dc529879c862573bae/.command.run: Copied (new)
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2026/05/29 18:38:31 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1e/f6e49180b922dc529879c862573bae/.command.out: Copied (new)
2026/05/29 18:38:31 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1e/f6e49180b922dc529879c862573bae/.command.sh: Copied (new)
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2026/05/29 18:38:31 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/7c/c559cea42c547991b16fb8322f523e/.command.err: Copied (new)
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2026/05/29 18:38:31 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/7c/c559cea42c547991b16fb8322f523e/.command.run: Copied (new)
2026/05/29 18:38:31 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/7c/c559cea42c547991b16fb8322f523e/.command.log: Copied (new)
2026/05/29 18:38:31 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/7c/c559cea42c547991b16fb8322f523e/.command.trace: Copied (new)
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2026/05/29 18:38:31 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/7c/c559cea42c547991b16fb8322f523e/.exitcode: Copied (new)
2026/05/29 18:38:31 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/6c/daa7ce5d73ce9d3c53ef0e2df73ef2/.command.begin: Copied (new)
2026/05/29 18:38:31 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/7c/c559cea42c547991b16fb8322f523e/.command.out: Copied (new)
2026/05/29 18:38:31 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/6c/daa7ce5d73ce9d3c53ef0e2df73ef2/.command.log: Copied (new)
2026/05/29 18:38:31 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/6c/daa7ce5d73ce9d3c53ef0e2df73ef2/.exitcode: Copied (new)
2026/05/29 18:38:31 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/6c/daa7ce5d73ce9d3c53ef0e2df73ef2/.command.run: Copied (new)
2026/05/29 18:38:31 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/6c/daa7ce5d73ce9d3c53ef0e2df73ef2/.command.trace: Copied (new)
2026/05/29 18:38:31 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/6c/daa7ce5d73ce9d3c53ef0e2df73ef2/.command.sh: Copied (new)
2026/05/29 18:38:31 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/6c/daa7ce5d73ce9d3c53ef0e2df73ef2/.command.out: Copied (new)
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2026/05/29 18:38:31 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780022138294_280034.log: Copied (new)
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2026/05/29 18:38:31 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780022138286_280034.log: Copied (new)
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2026/05/29 18:38:31 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529011419.log: Copied (new)
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2026/05/29 18:38:31 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/6e/3b4779f4705f1aa5817d18ec49a1e6/.command.begin: Copied (new)
2026/05/29 18:38:31 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/6e/3b4779f4705f1aa5817d18ec49a1e6/.command.out: Copied (new)
2026/05/29 18:38:31 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/6e/3b4779f4705f1aa5817d18ec49a1e6/.exitcode: Copied (new)
2026/05/29 18:38:31 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/6e/3b4779f4705f1aa5817d18ec49a1e6/.command.trace: Copied (new)
2026/05/29 18:38:31 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/6e/3b4779f4705f1aa5817d18ec49a1e6/.command.run: Copied (new)
2026/05/29 18:38:31 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/6e/3b4779f4705f1aa5817d18ec49a1e6/.command.sh: Copied (new)
2026/05/29 18:38:31 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/6e/3b4779f4705f1aa5817d18ec49a1e6/.command.log: Copied (new)
2026/05/29 18:38:31 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/7e/c89c970609e34518a2fe9ca0bde79e/.command.begin: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/Nirvana-20260529013234.log: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780022234518_284691.log: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/7e/c89c970609e34518a2fe9ca0bde79e/.command.err: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780022234526_284691.log: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/7e/c89c970609e34518a2fe9ca0bde79e/.command.log: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/7e/c89c970609e34518a2fe9ca0bde79e/.exitcode: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/7e/c89c970609e34518a2fe9ca0bde79e/.command.trace: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/74/2a75429d18e16536f1e698fe392afd/.command.begin: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/7e/c89c970609e34518a2fe9ca0bde79e/.command.run: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/7e/c89c970609e34518a2fe9ca0bde79e/.command.sh: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/7e/c89c970609e34518a2fe9ca0bde79e/.command.out: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/74/2a75429d18e16536f1e698fe392afd/.command.err: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/74/2a75429d18e16536f1e698fe392afd/.command.out: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/74/2a75429d18e16536f1e698fe392afd/.command.log: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/74/2a75429d18e16536f1e698fe392afd/.command.run: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/74/2a75429d18e16536f1e698fe392afd/.exitcode: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/20/34155c9176c288fd9207433cef5411/.command.err: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/74/2a75429d18e16536f1e698fe392afd/.command.trace: Copied (new)
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2026/05/29 18:38:32 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/20/34155c9176c288fd9207433cef5411/.command.out: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/20/34155c9176c288fd9207433cef5411/.command.run: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/74/2a75429d18e16536f1e698fe392afd/.command.sh: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/71/acf4da4252ecc4c7816ea5d4581210/.command.begin: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/20/34155c9176c288fd9207433cef5411/.command.log: Copied (new)
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2026/05/29 18:38:32 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/71/acf4da4252ecc4c7816ea5d4581210/.command.err: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/71/acf4da4252ecc4c7816ea5d4581210/.command.out: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/71/acf4da4252ecc4c7816ea5d4581210/.command.trace: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/71/acf4da4252ecc4c7816ea5d4581210/.command.log: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/71/acf4da4252ecc4c7816ea5d4581210/.command.sh: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/71/acf4da4252ecc4c7816ea5d4581210/.exitcode: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/71/acf4da4252ecc4c7816ea5d4581210/.command.run: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/6e/9667dab6def0843fe89ccb8dcfe938/.command.err: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/74/58184705b5c99d20d512cc959c25d5/LrCalculator/LrCalculator-20260529031223.log: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/69/34aa9f584066ab86f892d138f65066/LrCalculator/LrCalculator-20260529025716.log: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/6e/9667dab6def0843fe89ccb8dcfe938/.command.begin: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/6e/9667dab6def0843fe89ccb8dcfe938/.command.log: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/6e/9667dab6def0843fe89ccb8dcfe938/.command.out: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/6e/9667dab6def0843fe89ccb8dcfe938/.command.run: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/6e/9667dab6def0843fe89ccb8dcfe938/.command.trace: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/6e/9667dab6def0843fe89ccb8dcfe938/.exitcode: Copied (new)
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2026/05/29 18:38:32 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1e/ffab674744ff45514a056d24de7b68/.command.err: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1e/ffab674744ff45514a056d24de7b68/.command.out: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1e/ffab674744ff45514a056d24de7b68/.command.log: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1e/ffab674744ff45514a056d24de7b68/.command.run: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1e/ffab674744ff45514a056d24de7b68/.command.sh: Copied (new)
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2026/05/29 18:38:32 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/8f/a97e760f69694bbc3394917fbd9d6f/.command.begin: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/8f/a97e760f69694bbc3394917fbd9d6f/.command.err: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/8f/a97e760f69694bbc3394917fbd9d6f/.command.sh: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/8f/a97e760f69694bbc3394917fbd9d6f/.command.run: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/8f/a97e760f69694bbc3394917fbd9d6f/.exitcode: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/8e/9398f897aa1715e6883a4346fd6d4c/.command.begin: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/8e/9398f897aa1715e6883a4346fd6d4c/.command.err: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/8f/a97e760f69694bbc3394917fbd9d6f/.command.trace: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/6f/b930658282982f0e69c2687dcf8299/SampleAnalysisResults/1029_BR1-T1-TDNA-1_HLNMCDRX7_1_SARJeantLog-20260529032909.log: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/8e/9398f897aa1715e6883a4346fd6d4c/.command.run: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/8e/9398f897aa1715e6883a4346fd6d4c/.command.trace: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/8e/9398f897aa1715e6883a4346fd6d4c/.exitcode: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/70/7097d004a25c42a6293a02c2fe5c3c/.command.begin: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/82/388529c11d015ca0471fd5d1dfb65e/.command.begin: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/8e/9398f897aa1715e6883a4346fd6d4c/.command.sh: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/82/388529c11d015ca0471fd5d1dfb65e/.command.err: Copied (new)
2026/05/29 18:38:32 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/82/388529c11d015ca0471fd5d1dfb65e/.command.log: Copied (new)
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2026/05/29 18:38:33 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/77/6aecda14cc8637d49197783434cca1/.command.begin: Copied (new)
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2026/05/29 18:38:34 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/94/3dc4fa1c52026b78501513c9b8ac19/.exitcode: Copied (new)
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2026/05/29 18:38:34 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_run_1780022200363_283112.log: Copied (new)
2026/05/29 18:38:34 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/82/bb4dbf8b716a9e72fcf5cb7bb11571/.command.err: Copied (new)
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2026/05/29 18:38:34 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_pO-T1-TDNA-1_HLNMCDRX7_1_dna/dragen_syslog_1780022200356_283112.log: Copied (new)
2026/05/29 18:38:34 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/82/bb4dbf8b716a9e72fcf5cb7bb11571/.command.out: Copied (new)
2026/05/29 18:38:34 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/82/bb4dbf8b716a9e72fcf5cb7bb11571/.exitcode: Copied (new)
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2026/05/29 18:38:34 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/82/bb4dbf8b716a9e72fcf5cb7bb11571/.command.trace: Copied (new)
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2026/05/29 18:38:34 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/21/aee620a48680de6d0ebb19b487b2ab/.command.err: Copied (new)
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2026/05/29 18:38:34 INFO  : Logs_Intermediates/FastqGeneration/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna_S2_L002_R2_001.fastq.gz: Multi-thread Copied (new)
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2026/05/29 18:38:34 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/21/aee620a48680de6d0ebb19b487b2ab/.command.log: Copied (new)
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2026/05/29 18:38:34 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/21/aee620a48680de6d0ebb19b487b2ab/.command.out: Copied (new)
2026/05/29 18:38:34 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/21/aee620a48680de6d0ebb19b487b2ab/.command.run: Copied (new)
2026/05/29 18:38:34 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/21/aee620a48680de6d0ebb19b487b2ab/.command.sh: Copied (new)
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2026/05/29 18:38:34 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7b/766d575b337e6cb3d4db5859dc5f02/.command.begin: Copied (new)
2026/05/29 18:38:34 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/66/74f959a74eb7963ce9bf938098fd61/SampleAnalysisResults/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_SARJeantLog-20260529032941.log: Copied (new)
2026/05/29 18:38:34 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7b/766d575b337e6cb3d4db5859dc5f02/.command.env: Copied (new)
2026/05/29 18:38:34 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7b/766d575b337e6cb3d4db5859dc5f02/.command.out: Copied (new)
2026/05/29 18:38:34 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7b/766d575b337e6cb3d4db5859dc5f02/.command.err: Copied (new)
2026/05/29 18:38:34 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7b/766d575b337e6cb3d4db5859dc5f02/.exitcode: Copied (new)
2026/05/29 18:38:34 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7b/766d575b337e6cb3d4db5859dc5f02/.command.log: Copied (new)
2026/05/29 18:38:34 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7b/766d575b337e6cb3d4db5859dc5f02/.command.run: Copied (new)
2026/05/29 18:38:34 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/22/3c4d7e23da3f0f191f8732e7e6f7e8/.command.err: Copied (new)
2026/05/29 18:38:34 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7b/766d575b337e6cb3d4db5859dc5f02/.command.sh: Copied (new)
2026/05/29 18:38:34 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/22/3c4d7e23da3f0f191f8732e7e6f7e8/.command.out: Copied (new)
2026/05/29 18:38:34 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7b/766d575b337e6cb3d4db5859dc5f02/.command.trace: Copied (new)
2026/05/29 18:38:34 INFO  : Logs_Intermediates/FastqGeneration/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna_S4_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:38:34 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/73/7b5bfa5edb33d7768b33b672bd1a97/.command.begin: Copied (new)
2026/05/29 18:38:34 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/22/3c4d7e23da3f0f191f8732e7e6f7e8/.command.log: Copied (new)
2026/05/29 18:38:34 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/73/7b5bfa5edb33d7768b33b672bd1a97/.command.log: Copied (new)
2026/05/29 18:38:34 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/73/7b5bfa5edb33d7768b33b672bd1a97/.command.err: Copied (new)
2026/05/29 18:38:34 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/22/3c4d7e23da3f0f191f8732e7e6f7e8/.command.run: Copied (new)
2026/05/29 18:38:34 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/22/3c4d7e23da3f0f191f8732e7e6f7e8/.command.sh: Copied (new)
2026/05/29 18:38:34 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/73/7b5bfa5edb33d7768b33b672bd1a97/.command.out: Copied (new)
2026/05/29 18:38:34 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/73/7b5bfa5edb33d7768b33b672bd1a97/.exitcode: Copied (new)
2026/05/29 18:38:34 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/73/7b5bfa5edb33d7768b33b672bd1a97/.command.trace: Copied (new)
2026/05/29 18:38:34 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/6f/b930658282982f0e69c2687dcf8299/.command.log: Copied (new)
2026/05/29 18:38:34 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/72/2860807fdad8506a4ed2d6439d56a5/.command.begin: Copied (new)
2026/05/29 18:38:34 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/73/7b5bfa5edb33d7768b33b672bd1a97/.command.run: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/73/7b5bfa5edb33d7768b33b672bd1a97/.command.sh: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/73/7b5bfa5edb33d7768b33b672bd1a97/Nirvana-20260529025721.log: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/72/2860807fdad8506a4ed2d6439d56a5/.command.err: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/72/2860807fdad8506a4ed2d6439d56a5/.command.log: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/72/2860807fdad8506a4ed2d6439d56a5/.exitcode: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/72/2860807fdad8506a4ed2d6439d56a5/.command.run: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/21/de4456c4b834a20bda7fcc6b5c9423/.command.err: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/72/2860807fdad8506a4ed2d6439d56a5/.command.trace: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/21/de4456c4b834a20bda7fcc6b5c9423/.command.out: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/72/2860807fdad8506a4ed2d6439d56a5/.command.sh: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/21/de4456c4b834a20bda7fcc6b5c9423/.command.run: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/76/7737b3e543d8337c2f4f8db170f81e/.command.begin: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/72/2860807fdad8506a4ed2d6439d56a5/.command.out: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/76/7737b3e543d8337c2f4f8db170f81e/.command.err: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/68/0f234b895a8d0753d3275b09ad4460/LrCalculator/LrCalculator-20260529025315.log: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/76/7737b3e543d8337c2f4f8db170f81e/.command.log: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/21/de4456c4b834a20bda7fcc6b5c9423/.command.log: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/21/de4456c4b834a20bda7fcc6b5c9423/.command.sh: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/76/7737b3e543d8337c2f4f8db170f81e/.command.run: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/76/7737b3e543d8337c2f4f8db170f81e/.command.out: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/76/7737b3e543d8337c2f4f8db170f81e/.exitcode: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/76/7737b3e543d8337c2f4f8db170f81e/.command.sh: Copied (new)
2026/05/29 18:38:35 INFO  : Logs_Intermediates/FastqGeneration/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna_S3_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:38:35 INFO  : Logs_Intermediates/nextflow_work_logs/41/3563c7e86af23761080160ebfcb962/.command.err: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/76/7737b3e543d8337c2f4f8db170f81e/.command.trace: Copied (new)
2026/05/29 18:38:35 INFO  : Logs_Intermediates/nextflow_work_logs/41/3563c7e86af23761080160ebfcb962/.command.out: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/88/1e2c1f6d89ca0c46e47bf54d7c320d/.command.log: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/6f/4ac281ffbd045fbb4e24c3dd8fbb7c/Gis/dragen_run_1780019524613_184909.log: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/6f/4ac281ffbd045fbb4e24c3dd8fbb7c/Gis/dragen_syslog_1780019524606_184909.log: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/9c/fa30834d16fb47a98524d24670cc5e/.command.err: Copied (new)
2026/05/29 18:38:35 INFO  : Logs_Intermediates/nextflow_work_logs/41/3563c7e86af23761080160ebfcb962/.command.log: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/9c/fa30834d16fb47a98524d24670cc5e/.command.log: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/9c/fa30834d16fb47a98524d24670cc5e/.command.begin: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/75/724be1ca6049d8c96b7e5d95011aa5/SampleAnalysisResults/1029_JAD-T1-TDNA-1_HLNMCDRX7_1_SARJeantLog-20260529033012.log: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/9c/fa30834d16fb47a98524d24670cc5e/.command.out: Copied (new)
2026/05/29 18:38:35 INFO  : Logs_Intermediates/nextflow_work_logs/41/3563c7e86af23761080160ebfcb962/.command.sh: Copied (new)
2026/05/29 18:38:35 INFO  : Logs_Intermediates/nextflow_work_logs/41/3563c7e86af23761080160ebfcb962/.command.run: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/9c/fa30834d16fb47a98524d24670cc5e/.command.trace: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/9c/fa30834d16fb47a98524d24670cc5e/.command.sh: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/7b/4f6bf99eb6417ceb40b92c6b4de22e/.command.begin: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/9c/fa30834d16fb47a98524d24670cc5e/.exitcode: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/7b/4f6bf99eb6417ceb40b92c6b4de22e/.command.log: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/9c/fa30834d16fb47a98524d24670cc5e/.command.run: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/7b/4f6bf99eb6417ceb40b92c6b4de22e/.exitcode: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/7b/4f6bf99eb6417ceb40b92c6b4de22e/.command.err: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/7b/4f6bf99eb6417ceb40b92c6b4de22e/.command.run: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/7c/25e33cdded7621a6975279f2d9c5ae/Gis/dragen_syslog_1780022528632_265776.log: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/85/9d421fa1ac9e83152da630b55d5345/.command.begin: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/85/9d421fa1ac9e83152da630b55d5345/.command.err: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/7c/25e33cdded7621a6975279f2d9c5ae/Gis/dragen_run_1780022528639_265776.log: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/7b/4f6bf99eb6417ceb40b92c6b4de22e/.command.sh: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/7b/4f6bf99eb6417ceb40b92c6b4de22e/.command.trace: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/7b/4f6bf99eb6417ceb40b92c6b4de22e/.command.out: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/85/9d421fa1ac9e83152da630b55d5345/.command.run: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/85/9d421fa1ac9e83152da630b55d5345/.command.sh: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/85/9d421fa1ac9e83152da630b55d5345/.exitcode: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7c/20affe12964ec630d95699e470da80/.command.begin: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/85/9d421fa1ac9e83152da630b55d5345/.command.trace: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7c/20affe12964ec630d95699e470da80/.command.err: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/85/9d421fa1ac9e83152da630b55d5345/.command.out: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7c/20affe12964ec630d95699e470da80/.exitcode: Copied (new)
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2026/05/29 18:38:35 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7b/83e0d2c10226ec79586ac72fbe60cd/.command.begin: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/85/9d421fa1ac9e83152da630b55d5345/.command.log: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7c/20affe12964ec630d95699e470da80/.command.out: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7c/20affe12964ec630d95699e470da80/.command.run: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7c/20affe12964ec630d95699e470da80/.command.sh: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7b/83e0d2c10226ec79586ac72fbe60cd/.command.log: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7b/83e0d2c10226ec79586ac72fbe60cd/.command.run: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7b/83e0d2c10226ec79586ac72fbe60cd/.command.out: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7b/83e0d2c10226ec79586ac72fbe60cd/.command.err: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7b/83e0d2c10226ec79586ac72fbe60cd/.command.sh: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7c/20affe12964ec630d95699e470da80/.command.trace: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7b/83e0d2c10226ec79586ac72fbe60cd/.command.trace: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7b/83e0d2c10226ec79586ac72fbe60cd/.exitcode: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/23/960f909c5364724f3d41454add962e/.command.err: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/73/891ec610d01ac0d8fa411af4983f08/.command.err: Copied (new)
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2026/05/29 18:38:35 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/23/960f909c5364724f3d41454add962e/.command.log: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/23/960f909c5364724f3d41454add962e/.command.out: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/23/960f909c5364724f3d41454add962e/.command.run: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/23/960f909c5364724f3d41454add962e/.command.sh: Copied (new)
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2026/05/29 18:38:35 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/73/891ec610d01ac0d8fa411af4983f08/.exitcode: Copied (new)
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2026/05/29 18:38:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/7f/ac30a718ae16a56a0f30747fe29075/.command.begin: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/68/27e65dc55aea687425a34e31a937fb/Gis/dragen_syslog_1780021642139_257120.log: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/7f/ac30a718ae16a56a0f30747fe29075/.command.err: Copied (new)
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2026/05/29 18:38:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/7f/ac30a718ae16a56a0f30747fe29075/.command.out: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/73/891ec610d01ac0d8fa411af4983f08/.command.out: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/73/891ec610d01ac0d8fa411af4983f08/.command.trace: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/73/891ec610d01ac0d8fa411af4983f08/.command.sh: Copied (new)
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2026/05/29 18:38:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/7f/ac30a718ae16a56a0f30747fe29075/.command.trace: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/7f/ac30a718ae16a56a0f30747fe29075/.command.log: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/89/7967fbc90d58e3227b52191bac3a26/.command.err: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/89/7967fbc90d58e3227b52191bac3a26/.command.begin: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/7f/ac30a718ae16a56a0f30747fe29075/.exitcode: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/7f/ac30a718ae16a56a0f30747fe29075/gen_coverage_reports.log: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/89/7967fbc90d58e3227b52191bac3a26/.command.out: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/89/7967fbc90d58e3227b52191bac3a26/.command.log: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/89/7967fbc90d58e3227b52191bac3a26/.exitcode: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/7f/ac30a718ae16a56a0f30747fe29075/.command.sh: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/89/7967fbc90d58e3227b52191bac3a26/.command.sh: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/89/7967fbc90d58e3227b52191bac3a26/.command.trace: Copied (new)
2026/05/29 18:38:35 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/89/7967fbc90d58e3227b52191bac3a26/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:38:35 INFO  : Logs_Intermediates/nextflow_work_logs/42/0f04a2dd45d6c21d87a630adb02b51/.command.err: Copied (new)
2026/05/29 18:38:36 INFO  : Logs_Intermediates/nextflow_work_logs/42/0f04a2dd45d6c21d87a630adb02b51/.command.log: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/89/7967fbc90d58e3227b52191bac3a26/.command.run: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/24/28cde2ead7c9d45213d93134361948/.command.err: Copied (new)
2026/05/29 18:38:36 INFO  : Logs_Intermediates/nextflow_work_logs/42/0f04a2dd45d6c21d87a630adb02b51/.command.run: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/24/28cde2ead7c9d45213d93134361948/.command.log: Copied (new)
2026/05/29 18:38:36 INFO  : Logs_Intermediates/nextflow_work_logs/42/0f04a2dd45d6c21d87a630adb02b51/.command.sh: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/24/28cde2ead7c9d45213d93134361948/.command.out: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/24/28cde2ead7c9d45213d93134361948/.command.run: Copied (new)
2026/05/29 18:38:36 INFO  : Logs_Intermediates/nextflow_work_logs/42/0f04a2dd45d6c21d87a630adb02b51/.command.out: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/24/28cde2ead7c9d45213d93134361948/.command.sh: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/6c/daa7ce5d73ce9d3c53ef0e2df73ef2/Contamination/Spoiler-20260529030614.log: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/88/1e2c1f6d89ca0c46e47bf54d7c320d/.command.out: Copied (new)
2026/05/29 18:38:36 INFO  : Logs_Intermediates/nextflow_work_logs/43/a37a4cb5c08ba00e31fc041fb5ad4b/.command.err: Copied (new)
2026/05/29 18:38:36 INFO  : Logs_Intermediates/nextflow_work_logs/43/a37a4cb5c08ba00e31fc041fb5ad4b/.command.out: Copied (new)
2026/05/29 18:38:36 INFO  : Logs_Intermediates/nextflow_work_logs/41/a4a10b9fd0dcdd40fc6b2a5b3d9cd7/.command.err: Copied (new)
2026/05/29 18:38:36 INFO  : Logs_Intermediates/nextflow_work_logs/43/a37a4cb5c08ba00e31fc041fb5ad4b/.command.sh: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/7c/c559cea42c547991b16fb8322f523e/DnaDragenExonCnvCaller/dragen_run_1780020941759_213197.log: Copied (new)
2026/05/29 18:38:36 INFO  : Logs_Intermediates/nextflow_work_logs/43/a37a4cb5c08ba00e31fc041fb5ad4b/.command.log: Copied (new)
2026/05/29 18:38:36 INFO  : Logs_Intermediates/nextflow_work_logs/41/a4a10b9fd0dcdd40fc6b2a5b3d9cd7/.command.run: Copied (new)
2026/05/29 18:38:36 INFO  : Logs_Intermediates/nextflow_work_logs/43/a37a4cb5c08ba00e31fc041fb5ad4b/.command.run: Copied (new)
2026/05/29 18:38:36 INFO  : Logs_Intermediates/nextflow_work_logs/41/a4a10b9fd0dcdd40fc6b2a5b3d9cd7/.command.out: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/76/b606744088d5577a238ec662da4c7f/.command.begin: Copied (new)
2026/05/29 18:38:36 INFO  : Logs_Intermediates/nextflow_work_logs/41/a4a10b9fd0dcdd40fc6b2a5b3d9cd7/.command.log: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/7c/c559cea42c547991b16fb8322f523e/DnaDragenExonCnvCaller/dragen_syslog_1780020941751_213197.log: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/76/b606744088d5577a238ec662da4c7f/.command.err: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/76/b606744088d5577a238ec662da4c7f/.command.out: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/76/b606744088d5577a238ec662da4c7f/.command.log: Copied (new)
2026/05/29 18:38:36 INFO  : Logs_Intermediates/nextflow_work_logs/41/a4a10b9fd0dcdd40fc6b2a5b3d9cd7/.command.sh: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/76/b606744088d5577a238ec662da4c7f/.command.run: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/76/b606744088d5577a238ec662da4c7f/.exitcode: Copied (new)
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2026/05/29 18:38:36 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/8d/4d5abe1b56eff927dbc0e481a60a61/.command.begin: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/8d/4d5abe1b56eff927dbc0e481a60a61/.command.err: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/8d/4d5abe1b56eff927dbc0e481a60a61/.command.out: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/8d/4d5abe1b56eff927dbc0e481a60a61/.exitcode: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/8d/4d5abe1b56eff927dbc0e481a60a61/.command.run: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/a1/94478843f323dd98559c04082806ec/.command.begin: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/a1/94478843f323dd98559c04082806ec/.command.err: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/8d/4d5abe1b56eff927dbc0e481a60a61/.command.trace: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/8d/4d5abe1b56eff927dbc0e481a60a61/.command.sh: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/76/b606744088d5577a238ec662da4c7f/gen_coverage_reports.log: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/a1/94478843f323dd98559c04082806ec/.command.run: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/a1/94478843f323dd98559c04082806ec/.command.sh: Copied (new)
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2026/05/29 18:38:36 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7c/f3c30b932591b5ff9a3d66aebd4b81/.command.err: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/a1/94478843f323dd98559c04082806ec/.exitcode: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7c/f3c30b932591b5ff9a3d66aebd4b81/.exitcode: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/8d/4d5abe1b56eff927dbc0e481a60a61/.command.log: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7c/f3c30b932591b5ff9a3d66aebd4b81/.command.begin: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/a3/75e54623ec5700ea8fd2499e8f3250/.command.begin: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7c/f3c30b932591b5ff9a3d66aebd4b81/.command.log: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7c/f3c30b932591b5ff9a3d66aebd4b81/.command.sh: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7c/f3c30b932591b5ff9a3d66aebd4b81/.command.run: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/a3/75e54623ec5700ea8fd2499e8f3250/.command.err: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/a3/75e54623ec5700ea8fd2499e8f3250/.command.log: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7c/f3c30b932591b5ff9a3d66aebd4b81/.command.trace: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/a3/75e54623ec5700ea8fd2499e8f3250/.command.out: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/a3/75e54623ec5700ea8fd2499e8f3250/.command.sh: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/a3/75e54623ec5700ea8fd2499e8f3250/.command.run: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7c/f3c30b932591b5ff9a3d66aebd4b81/.command.out: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/a3/75e54623ec5700ea8fd2499e8f3250/.command.trace: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/90/fe614fdc477baf5d695993735b3443/.command.begin: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/90/fe614fdc477baf5d695993735b3443/.command.err: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/a3/75e54623ec5700ea8fd2499e8f3250/.exitcode: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/90/fe614fdc477baf5d695993735b3443/.command.out: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/90/fe614fdc477baf5d695993735b3443/.command.sh: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/90/fe614fdc477baf5d695993735b3443/.command.run: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/90/fe614fdc477baf5d695993735b3443/.command.log: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/7e/c89c970609e34518a2fe9ca0bde79e/Gis/dragen_syslog_1780021900510_245859.log: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/90/fe614fdc477baf5d695993735b3443/.exitcode: Copied (new)
2026/05/29 18:38:36 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/25/1c6afdd4076cd76855eac0c592b4b0/.command.err: Copied (new)
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2026/05/29 18:38:37 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/98/5fc40ee79ca56df15af0638d03acb5/.command.sh: Copied (new)
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2026/05/29 18:38:37 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/79/cd2a597dda0a40e9f7329953ecafc8/.command.out: Copied (new)
2026/05/29 18:38:37 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/80/ec85d466f8fe9b0d76ae49fe6e799b/.command.out: Copied (new)
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2026/05/29 18:38:37 INFO  : Logs_Intermediates/nextflow_work_logs/45/60004cc1caa68c46f0431789b125a7/.command.sh: Copied (new)
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2026/05/29 18:38:37 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/79/cd2a597dda0a40e9f7329953ecafc8/.command.log: Copied (new)
2026/05/29 18:38:37 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/79/cd2a597dda0a40e9f7329953ecafc8/.exitcode: Copied (new)
2026/05/29 18:38:37 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/79/cd2a597dda0a40e9f7329953ecafc8/.command.trace: Copied (new)
2026/05/29 18:38:37 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/79/cd2a597dda0a40e9f7329953ecafc8/Nirvana-20260529012726.log: Copied (new)
2026/05/29 18:38:37 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/77/58a0390614a35c79bd1acab144495b/.command.begin: Copied (new)
2026/05/29 18:38:37 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/77/58a0390614a35c79bd1acab144495b/.command.err: Copied (new)
2026/05/29 18:38:37 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/77/58a0390614a35c79bd1acab144495b/.exitcode: Copied (new)
2026/05/29 18:38:37 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/77/58a0390614a35c79bd1acab144495b/.command.run: Copied (new)
2026/05/29 18:38:37 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/76/7737b3e543d8337c2f4f8db170f81e/LrCalculator/LrCalculator-20260529025718.log: Copied (new)
2026/05/29 18:38:37 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/8d/f3da25e0baa9ad0d7dea0044865222/.command.begin: Copied (new)
2026/05/29 18:38:37 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/8d/f3da25e0baa9ad0d7dea0044865222/.command.err: Copied (new)
2026/05/29 18:38:37 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/77/58a0390614a35c79bd1acab144495b/.command.sh: Copied (new)
2026/05/29 18:38:37 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/77/58a0390614a35c79bd1acab144495b/.command.log: Copied (new)
2026/05/29 18:38:37 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/77/58a0390614a35c79bd1acab144495b/.command.trace: Copied (new)
2026/05/29 18:38:37 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/8d/f3da25e0baa9ad0d7dea0044865222/.command.out: Copied (new)
2026/05/29 18:38:37 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/8d/f3da25e0baa9ad0d7dea0044865222/.command.log: Copied (new)
2026/05/29 18:38:37 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/8d/f3da25e0baa9ad0d7dea0044865222/.command.run: Copied (new)
2026/05/29 18:38:37 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/77/58a0390614a35c79bd1acab144495b/.command.out: Copied (new)
2026/05/29 18:38:37 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/8d/f3da25e0baa9ad0d7dea0044865222/.command.sh: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/9a/775cecb2e47443879c155949b6e9fd/.command.begin: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/8d/f3da25e0baa9ad0d7dea0044865222/Nirvana-20260529023508.log: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/8d/f3da25e0baa9ad0d7dea0044865222/.exitcode: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/9a/775cecb2e47443879c155949b6e9fd/.command.err: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/9a/775cecb2e47443879c155949b6e9fd/.command.log: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/9a/775cecb2e47443879c155949b6e9fd/.command.run: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/9a/775cecb2e47443879c155949b6e9fd/.exitcode: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/8d/f3da25e0baa9ad0d7dea0044865222/.command.trace: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/72/2860807fdad8506a4ed2d6439d56a5/LrCalculator/LrCalculator-20260529025311.log: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/9a/775cecb2e47443879c155949b6e9fd/.command.trace: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/9a/775cecb2e47443879c155949b6e9fd/.command.out: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/7b/4f6bf99eb6417ceb40b92c6b4de22e/Tmb/dragen_run_1780023246633_307318.log: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/a7/e8769a7faa60da09d44b7debc5f7f8/.command.begin: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/a7/e8769a7faa60da09d44b7debc5f7f8/.command.err: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/7b/4f6bf99eb6417ceb40b92c6b4de22e/Tmb/dragen_syslog_1780023246623_307318.log: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/9a/775cecb2e47443879c155949b6e9fd/.command.sh: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/a7/e8769a7faa60da09d44b7debc5f7f8/.exitcode: Copied (new)
2026/05/29 18:38:38 INFO  : Logs_Intermediates/nextflow_work_logs/47/6b9fad8577d89573527c1842c96c00/.command.err: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/a7/e8769a7faa60da09d44b7debc5f7f8/.command.sh: Copied (new)
2026/05/29 18:38:38 INFO  : Logs_Intermediates/nextflow_work_logs/47/6b9fad8577d89573527c1842c96c00/.command.log: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/a7/e8769a7faa60da09d44b7debc5f7f8/.command.trace: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/a7/e8769a7faa60da09d44b7debc5f7f8/.command.run: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/87/f49ef91caa96881df2eaeb0b6175ba/.command.begin: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/87/f49ef91caa96881df2eaeb0b6175ba/.command.err: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/87/f49ef91caa96881df2eaeb0b6175ba/.command.out: Copied (new)
2026/05/29 18:38:38 INFO  : Logs_Intermediates/nextflow_work_logs/47/6b9fad8577d89573527c1842c96c00/.command.out: Copied (new)
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2026/05/29 18:38:38 INFO  : Logs_Intermediates/nextflow_work_logs/47/6b9fad8577d89573527c1842c96c00/.command.sh: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/87/f49ef91caa96881df2eaeb0b6175ba/.command.log: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/87/f49ef91caa96881df2eaeb0b6175ba/.command.trace: Copied (new)
2026/05/29 18:38:38 INFO  : Logs_Intermediates/nextflow_work_logs/45/a7736f1e3b11a92afa843230b1b485/.command.err: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/87/f49ef91caa96881df2eaeb0b6175ba/.exitcode: Copied (new)
2026/05/29 18:38:38 INFO  : Logs_Intermediates/nextflow_work_logs/45/a7736f1e3b11a92afa843230b1b485/.command.out: Copied (new)
2026/05/29 18:38:38 INFO  : Logs_Intermediates/nextflow_work_logs/45/a7736f1e3b11a92afa843230b1b485/.command.log: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/87/f49ef91caa96881df2eaeb0b6175ba/.command.run: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/87/f49ef91caa96881df2eaeb0b6175ba/Nirvana-20260529025717.log: Copied (new)
2026/05/29 18:38:38 INFO  : Logs_Intermediates/nextflow_work_logs/45/a7736f1e3b11a92afa843230b1b485/.command.run: Copied (new)
2026/05/29 18:38:38 INFO  : Logs_Intermediates/nextflow_work_logs/45/a7736f1e3b11a92afa843230b1b485/.command.sh: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/85/9d421fa1ac9e83152da630b55d5345/DnaDragenCaller/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/87/f49ef91caa96881df2eaeb0b6175ba/.command.sh: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/85/9d421fa1ac9e83152da630b55d5345/DnaDragenCaller/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/9d/45030c8644333ed468a8d59efa4353/.command.env: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/9d/45030c8644333ed468a8d59efa4353/.command.err: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/9d/45030c8644333ed468a8d59efa4353/.command.log: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/85/9d421fa1ac9e83152da630b55d5345/DnaDragenCaller/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/9d/45030c8644333ed468a8d59efa4353/.command.out: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/9d/45030c8644333ed468a8d59efa4353/.command.run: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/9d/45030c8644333ed468a8d59efa4353/.exitcode: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/9d/45030c8644333ed468a8d59efa4353/.command.trace: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/9d/45030c8644333ed468a8d59efa4353/.command.begin: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7b/83e0d2c10226ec79586ac72fbe60cd/Gis/dragen_run_1780020685261_226497.log: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/9d/45030c8644333ed468a8d59efa4353/.command.sh: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7b/83e0d2c10226ec79586ac72fbe60cd/Gis/dragen_syslog_1780020685254_226497.log: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/85/9d421fa1ac9e83152da630b55d5345/DnaDragenCaller/dragen_syslog_1780017659868_106814.log: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/85/97a85ebbf80e357e6854b79fd159ea/.command.err: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/85/97a85ebbf80e357e6854b79fd159ea/.command.out: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/85/9d421fa1ac9e83152da630b55d5345/DnaDragenCaller/dragen_run_1780017659884_106814.log: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/85/97a85ebbf80e357e6854b79fd159ea/.command.begin: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/85/97a85ebbf80e357e6854b79fd159ea/.command.run: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/85/97a85ebbf80e357e6854b79fd159ea/.command.sh: Copied (new)
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2026/05/29 18:38:38 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/73/891ec610d01ac0d8fa411af4983f08/SampleSheetReader/ReaderService-20260529003305.log: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/27/923950db8330633c585af3e8c22c11/.command.err: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/85/97a85ebbf80e357e6854b79fd159ea/.exitcode: Copied (new)
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2026/05/29 18:38:38 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/27/923950db8330633c585af3e8c22c11/.command.log: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/27/923950db8330633c585af3e8c22c11/.command.out: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/85/97a85ebbf80e357e6854b79fd159ea/Nirvana-20260529025314.log: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/9e/c038d58acc0aad12379d937b9c5b79/.command.begin: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/89/7967fbc90d58e3227b52191bac3a26/Contamination/Spoiler-20260529032455.log: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/27/923950db8330633c585af3e8c22c11/.command.sh: Copied (new)
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2026/05/29 18:38:38 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/27/923950db8330633c585af3e8c22c11/.command.run: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/9e/c038d58acc0aad12379d937b9c5b79/.command.run: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/9e/c038d58acc0aad12379d937b9c5b79/.exitcode: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/9e/c038d58acc0aad12379d937b9c5b79/.command.log: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/9e/c038d58acc0aad12379d937b9c5b79/.command.trace: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/9e/c038d58acc0aad12379d937b9c5b79/.command.sh: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/9e/c038d58acc0aad12379d937b9c5b79/.command.out: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/8e/84ff4b23bad4c9434ebd204f178bee/.command.begin: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/8e/84ff4b23bad4c9434ebd204f178bee/.command.err: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2a/913dafec84574a4274b656f0f9a225/.command.out: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/8e/84ff4b23bad4c9434ebd204f178bee/.command.out: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2a/913dafec84574a4274b656f0f9a225/.command.sh: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2a/913dafec84574a4274b656f0f9a225/.command.log: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/8e/84ff4b23bad4c9434ebd204f178bee/.exitcode: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2a/913dafec84574a4274b656f0f9a225/.command.run: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2a/913dafec84574a4274b656f0f9a225/.command.err: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/8e/84ff4b23bad4c9434ebd204f178bee/.command.trace: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/8e/84ff4b23bad4c9434ebd204f178bee/.command.log: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/8e/84ff4b23bad4c9434ebd204f178bee/Nirvana-20260529012936.log: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/8e/84ff4b23bad4c9434ebd204f178bee/.command.sh: Copied (new)
2026/05/29 18:38:38 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/8e/84ff4b23bad4c9434ebd204f178bee/.command.run: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/ab/d67f699cbd339330d7e3769d4a4ce3/.command.err: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/ab/d67f699cbd339330d7e3769d4a4ce3/.command.begin: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/ab/d67f699cbd339330d7e3769d4a4ce3/.command.run: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/ab/d67f699cbd339330d7e3769d4a4ce3/.exitcode: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/9d/b1fb8f2550cd4ece8b2426267a8d1d/.command.begin: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/9d/b1fb8f2550cd4ece8b2426267a8d1d/.command.err: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/9d/b1fb8f2550cd4ece8b2426267a8d1d/.command.out: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/ab/d67f699cbd339330d7e3769d4a4ce3/.command.trace: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/ab/d67f699cbd339330d7e3769d4a4ce3/.command.sh: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/9d/b1fb8f2550cd4ece8b2426267a8d1d/.command.log: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/9d/b1fb8f2550cd4ece8b2426267a8d1d/.command.sh: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/9d/b1fb8f2550cd4ece8b2426267a8d1d/.exitcode: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/9d/b1fb8f2550cd4ece8b2426267a8d1d/.command.run: Copied (new)
2026/05/29 18:38:39 INFO  : Logs_Intermediates/nextflow_work_logs/48/0bacceb9cb23b5ae459045167be599/.command.err: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/9d/b1fb8f2550cd4ece8b2426267a8d1d/.command.trace: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/9d/b1fb8f2550cd4ece8b2426267a8d1d/Nirvana-20260529011419.log: Copied (new)
2026/05/29 18:38:39 INFO  : Logs_Intermediates/FastqGeneration/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna_S3_L002_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a0/6c9cec0050320a8803aaa0e26d0f4e/.command.begin: Copied (new)
2026/05/29 18:38:39 INFO  : Logs_Intermediates/nextflow_work_logs/48/0bacceb9cb23b5ae459045167be599/.command.log: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a0/6c9cec0050320a8803aaa0e26d0f4e/.command.log: Copied (new)
2026/05/29 18:38:39 INFO  : Logs_Intermediates/nextflow_work_logs/48/0bacceb9cb23b5ae459045167be599/.command.sh: Copied (new)
2026/05/29 18:38:39 INFO  : Logs_Intermediates/nextflow_work_logs/48/0bacceb9cb23b5ae459045167be599/.command.run: Copied (new)
2026/05/29 18:38:39 INFO  : Logs_Intermediates/nextflow_work_logs/48/0bacceb9cb23b5ae459045167be599/.command.out: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a0/6c9cec0050320a8803aaa0e26d0f4e/.command.out: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a0/6c9cec0050320a8803aaa0e26d0f4e/.command.err: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a0/6c9cec0050320a8803aaa0e26d0f4e/.command.trace: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a0/6c9cec0050320a8803aaa0e26d0f4e/.command.sh: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a0/6c9cec0050320a8803aaa0e26d0f4e/.exitcode: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/86/25a87f237e4c4583487dcc5884ce13/.command.begin: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a0/6c9cec0050320a8803aaa0e26d0f4e/.command.run: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/86/25a87f237e4c4583487dcc5884ce13/.command.log: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/86/25a87f237e4c4583487dcc5884ce13/.command.out: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/8d/4d5abe1b56eff927dbc0e481a60a61/LrCalculator/LrCalculator-20260529023722.log: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/86/25a87f237e4c4583487dcc5884ce13/.command.run: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/86/25a87f237e4c4583487dcc5884ce13/.command.err: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/86/25a87f237e4c4583487dcc5884ce13/.command.trace: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/86/25a87f237e4c4583487dcc5884ce13/.exitcode: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/85/d0e2e375e1c95f70762d44a0e80e35/.command.env: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/86/25a87f237e4c4583487dcc5884ce13/.command.sh: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/85/d0e2e375e1c95f70762d44a0e80e35/.command.begin: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/85/d0e2e375e1c95f70762d44a0e80e35/.command.err: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/8a/2c79054c31c2814ad2c2f47d3a298b/SampleAnalysisResults/1267_2-T1-TDNA-1_HLNMCDRX7_1_SARJeantLog-20260529032957.log: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/85/d0e2e375e1c95f70762d44a0e80e35/.command.log: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/85/d0e2e375e1c95f70762d44a0e80e35/.command.run: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/85/d0e2e375e1c95f70762d44a0e80e35/.command.out: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/85/d0e2e375e1c95f70762d44a0e80e35/.command.sh: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/85/d0e2e375e1c95f70762d44a0e80e35/.exitcode: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a0/4b9169d02dc3a88adcd645007c02ba/.command.err: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/85/d0e2e375e1c95f70762d44a0e80e35/.command.trace: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a0/4b9169d02dc3a88adcd645007c02ba/.command.begin: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a0/4b9169d02dc3a88adcd645007c02ba/.command.log: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a0/4b9169d02dc3a88adcd645007c02ba/.command.out: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a0/4b9169d02dc3a88adcd645007c02ba/.exitcode: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a0/4b9169d02dc3a88adcd645007c02ba/.command.run: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7c/f3c30b932591b5ff9a3d66aebd4b81/Gis/dragen_syslog_1780020979639_237243.log: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a0/4b9169d02dc3a88adcd645007c02ba/.command.sh: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/27/e828b8a085f6adfa3b390f0a895ae9/.command.err: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a0/4b9169d02dc3a88adcd645007c02ba/.command.trace: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/7c/f3c30b932591b5ff9a3d66aebd4b81/Gis/dragen_run_1780020979646_237243.log: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/27/e828b8a085f6adfa3b390f0a895ae9/.command.sh: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/ac/6c28029d0273bf3eecab28280ea60a/.command.err: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/27/e828b8a085f6adfa3b390f0a895ae9/.command.log: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/ac/6c28029d0273bf3eecab28280ea60a/.command.begin: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/27/e828b8a085f6adfa3b390f0a895ae9/.command.run: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/27/e828b8a085f6adfa3b390f0a895ae9/.command.out: Copied (new)
2026/05/29 18:38:39 INFO  : Logs_Intermediates/DnaDragenCaller/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna/1047_CQ-T1-TDNA-1_HLNMCDRX7_1_dna.bam: Multi-thread Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/ac/6c28029d0273bf3eecab28280ea60a/.command.run: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/8f/52a3ce2dbda2c9a04b0bbe93215bcd/.command.err: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/ac/6c28029d0273bf3eecab28280ea60a/.exitcode: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/8f/52a3ce2dbda2c9a04b0bbe93215bcd/.command.begin: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/ac/6c28029d0273bf3eecab28280ea60a/.command.out: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/8f/52a3ce2dbda2c9a04b0bbe93215bcd/.command.log: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/8f/52a3ce2dbda2c9a04b0bbe93215bcd/.command.out: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/ac/6c28029d0273bf3eecab28280ea60a/.command.sh: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/ac/6c28029d0273bf3eecab28280ea60a/.command.log: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/8f/52a3ce2dbda2c9a04b0bbe93215bcd/.command.trace: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/8f/52a3ce2dbda2c9a04b0bbe93215bcd/.exitcode: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/ac/6c28029d0273bf3eecab28280ea60a/.command.trace: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/8f/52a3ce2dbda2c9a04b0bbe93215bcd/.command.run: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/8f/52a3ce2dbda2c9a04b0bbe93215bcd/.command.sh: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2a/98f2b9d05bcfeab7ddcad451af3899/.command.err: Copied (new)
2026/05/29 18:38:39 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2a/98f2b9d05bcfeab7ddcad451af3899/.command.out: Copied (new)
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2026/05/29 18:38:40 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2b/2c4225627ab2a85f991527f88f781e/.command.err: Copied (new)
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2026/05/29 18:38:40 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2c/0ece23ada8ca34c9f41de3d4e09b84/.command.err: Copied (new)
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2026/05/29 18:38:40 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2c/0ece23ada8ca34c9f41de3d4e09b84/.command.run: Copied (new)
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2026/05/29 18:38:40 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a0/7850afe508b0b11cdbda3f1a146f92/.exitcode: Copied (new)
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2026/05/29 18:38:41 INFO  : Logs_Intermediates/nextflow_work_logs/4a/6f12dfc5c976a977fa032bee94931a/.command.log: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/88/30b9c5a59f27d31a24658b755e6467/.command.begin: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/88/30b9c5a59f27d31a24658b755e6467/.command.err: Copied (new)
2026/05/29 18:38:41 INFO  : Logs_Intermediates/nextflow_work_logs/4a/6f12dfc5c976a977fa032bee94931a/.command.err: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/77/58a0390614a35c79bd1acab144495b/DnaDragenExonCnvCaller/dragen_run_1780022804239_294691.log: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/88/30b9c5a59f27d31a24658b755e6467/.command.out: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/88/30b9c5a59f27d31a24658b755e6467/.command.log: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/88/30b9c5a59f27d31a24658b755e6467/.command.run: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/a7/e8769a7faa60da09d44b7debc5f7f8/.command.log: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/88/30b9c5a59f27d31a24658b755e6467/.exitcode: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/77/58a0390614a35c79bd1acab144495b/DnaDragenExonCnvCaller/dragen_syslog_1780022804232_294691.log: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/88/30b9c5a59f27d31a24658b755e6467/.command.trace: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a0/a31450938e6c7a4da69c907bbeb661/.command.begin: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/88/30b9c5a59f27d31a24658b755e6467/1029_OVG-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a0/a31450938e6c7a4da69c907bbeb661/.command.err: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/88/30b9c5a59f27d31a24658b755e6467/.command.sh: Copied (new)
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2026/05/29 18:38:41 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a0/7850afe508b0b11cdbda3f1a146f92/.command.trace: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a0/a31450938e6c7a4da69c907bbeb661/.command.log: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a3/2a08af8754f10a4d3f4dbe5fb5e4f7/.command.begin: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a0/a31450938e6c7a4da69c907bbeb661/.exitcode: Copied (new)
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2026/05/29 18:38:41 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a0/a31450938e6c7a4da69c907bbeb661/.command.sh: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a0/a31450938e6c7a4da69c907bbeb661/.command.out: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a3/2a08af8754f10a4d3f4dbe5fb5e4f7/.command.err: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a0/a31450938e6c7a4da69c907bbeb661/.command.run: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a0/a31450938e6c7a4da69c907bbeb661/.command.trace: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a3/2a08af8754f10a4d3f4dbe5fb5e4f7/.command.log: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a3/2a08af8754f10a4d3f4dbe5fb5e4f7/.command.run: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a3/2a08af8754f10a4d3f4dbe5fb5e4f7/.command.trace: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a2/cb000aaf915477c831415bd5914e68/.command.err: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a3/2a08af8754f10a4d3f4dbe5fb5e4f7/.exitcode: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a2/cb000aaf915477c831415bd5914e68/.command.begin: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a3/2a08af8754f10a4d3f4dbe5fb5e4f7/.command.sh: Copied (new)
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2026/05/29 18:38:41 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a2/cb000aaf915477c831415bd5914e68/.command.out: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a2/cb000aaf915477c831415bd5914e68/.exitcode: Copied (new)
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2026/05/29 18:38:41 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/ad/5c4d39954009aa5d9c63f60b59f6b5/.command.begin: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a2/cb000aaf915477c831415bd5914e68/.command.run: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/ad/5c4d39954009aa5d9c63f60b59f6b5/.command.err: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a2/cb000aaf915477c831415bd5914e68/.command.sh: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a2/cb000aaf915477c831415bd5914e68/.command.trace: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/ad/5c4d39954009aa5d9c63f60b59f6b5/.command.log: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/ad/5c4d39954009aa5d9c63f60b59f6b5/.command.out: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/a2/cb000aaf915477c831415bd5914e68/gen_coverage_reports.log: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/ad/5c4d39954009aa5d9c63f60b59f6b5/.exitcode: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/ad/5c4d39954009aa5d9c63f60b59f6b5/.command.run: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/b4/4414425aef1567c2c17da2671fe833/.command.begin: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/ad/5c4d39954009aa5d9c63f60b59f6b5/.command.sh: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/ad/5c4d39954009aa5d9c63f60b59f6b5/.command.trace: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/b4/4414425aef1567c2c17da2671fe833/.command.err: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/b4/4414425aef1567c2c17da2671fe833/.command.log: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/b4/4414425aef1567c2c17da2671fe833/.command.out: Copied (new)
2026/05/29 18:38:41 INFO  : Logs_Intermediates/FastqGeneration/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna_S3_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/98/1d7bd922330886d1d2c4b874ba729a/.command.err: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/b4/4414425aef1567c2c17da2671fe833/.exitcode: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/98/1d7bd922330886d1d2c4b874ba729a/.command.begin: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/b4/4414425aef1567c2c17da2671fe833/.command.trace: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/98/1d7bd922330886d1d2c4b874ba729a/.command.run: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/98/1d7bd922330886d1d2c4b874ba729a/.command.out: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/b4/4414425aef1567c2c17da2671fe833/.command.run: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/98/1d7bd922330886d1d2c4b874ba729a/.exitcode: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/98/1d7bd922330886d1d2c4b874ba729a/.command.sh: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/98/1d7bd922330886d1d2c4b874ba729a/.command.trace: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/98/1d7bd922330886d1d2c4b874ba729a/.command.log: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2d/83ce3b722e59b044a7467d8dd45d67/.command.err: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/98/1d7bd922330886d1d2c4b874ba729a/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/8e/9398f897aa1715e6883a4346fd6d4c/SampleAnalysisResults/1267_0-T1-TDNA-1_HLNMCDRX7_1_SARJeantLog-20260529032852.log: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2d/83ce3b722e59b044a7467d8dd45d67/.command.log: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2d/83ce3b722e59b044a7467d8dd45d67/.command.sh: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2d/83ce3b722e59b044a7467d8dd45d67/.command.out: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2c/4f5fc801c3c280575375df9c08066d/.command.log: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2c/4f5fc801c3c280575375df9c08066d/.command.err: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2c/4f5fc801c3c280575375df9c08066d/.command.out: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a9/04470775adcbce83ec1ec2f0e76ccb/.command.begin: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a9/04470775adcbce83ec1ec2f0e76ccb/.command.err: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/b4/4414425aef1567c2c17da2671fe833/.command.sh: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a9/04470775adcbce83ec1ec2f0e76ccb/.command.log: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a9/04470775adcbce83ec1ec2f0e76ccb/.command.out: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a9/04470775adcbce83ec1ec2f0e76ccb/.exitcode: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a9/04470775adcbce83ec1ec2f0e76ccb/.command.run: Copied (new)
2026/05/29 18:38:41 INFO  : Logs_Intermediates/nextflow_work_logs/48/93af6959ce3c34c82fdda36bdcc715/.command.err: Copied (new)
2026/05/29 18:38:41 INFO  : Logs_Intermediates/nextflow_work_logs/48/93af6959ce3c34c82fdda36bdcc715/.command.run: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a9/04470775adcbce83ec1ec2f0e76ccb/.command.trace: Copied (new)
2026/05/29 18:38:41 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a9/04470775adcbce83ec1ec2f0e76ccb/.command.sh: Copied (new)
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2026/05/29 18:38:41 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2c/4f5fc801c3c280575375df9c08066d/.command.run: Copied (new)
2026/05/29 18:38:41 INFO  : Logs_Intermediates/nextflow_work_logs/4a/995cf104d6c24564c6e109d69b7d59/.command.err: Copied (new)
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2026/05/29 18:38:42 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/b6/c408973e7dbf3767388869b035082a/.command.log: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/b6/c408973e7dbf3767388869b035082a/.command.begin: Copied (new)
2026/05/29 18:38:42 INFO  : Logs_Intermediates/nextflow_work_logs/4a/995cf104d6c24564c6e109d69b7d59/.command.out: Copied (new)
2026/05/29 18:38:42 INFO  : Logs_Intermediates/nextflow_work_logs/48/93af6959ce3c34c82fdda36bdcc715/.command.out: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/b6/c408973e7dbf3767388869b035082a/.command.err: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/b6/c408973e7dbf3767388869b035082a/.command.out: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/b6/c408973e7dbf3767388869b035082a/.command.run: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2d/83ce3b722e59b044a7467d8dd45d67/.command.run: Copied (new)
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2026/05/29 18:38:42 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2e/9a666cde65a2b577f031adfbf39b79/.command.log: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2e/9a666cde65a2b577f031adfbf39b79/.command.err: Copied (new)
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2026/05/29 18:38:42 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2e/9a666cde65a2b577f031adfbf39b79/.command.run: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2e/9a666cde65a2b577f031adfbf39b79/.command.out: Copied (new)
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2026/05/29 18:38:42 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2e/9a666cde65a2b577f031adfbf39b79/.command.sh: Copied (new)
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2026/05/29 18:38:42 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/9e/c038d58acc0aad12379d937b9c5b79/DnaDragenExonCnvCaller/dragen_syslog_1780021496760_230615.log: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/89/cfc5f6781cc48849a6a78a13e48aaf/.command.out: Copied (new)
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2026/05/29 18:38:42 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/89/cfc5f6781cc48849a6a78a13e48aaf/.command.run: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a5/8a51a0ff58f72c98528942a2ad4d47/.command.begin: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/a7/e8769a7faa60da09d44b7debc5f7f8/.command.out: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a5/8a51a0ff58f72c98528942a2ad4d47/.command.err: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/89/cfc5f6781cc48849a6a78a13e48aaf/.exitcode: Copied (new)
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2026/05/29 18:38:42 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/89/cfc5f6781cc48849a6a78a13e48aaf/.command.sh: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a5/8a51a0ff58f72c98528942a2ad4d47/.command.log: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a5/8a51a0ff58f72c98528942a2ad4d47/.command.run: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a5/8a51a0ff58f72c98528942a2ad4d47/.exitcode: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a5/8a51a0ff58f72c98528942a2ad4d47/.command.trace: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/ae/985a10d550493d60358b66434d1603/.command.begin: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a5/8a51a0ff58f72c98528942a2ad4d47/gen_coverage_reports.log: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/ae/985a10d550493d60358b66434d1603/.command.err: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/ae/985a10d550493d60358b66434d1603/.command.run: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/ae/985a10d550493d60358b66434d1603/.command.log: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/ae/985a10d550493d60358b66434d1603/.command.sh: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a5/8a51a0ff58f72c98528942a2ad4d47/.command.sh: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/ae/985a10d550493d60358b66434d1603/.exitcode: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2c/4f5fc801c3c280575375df9c08066d/.command.sh: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/ae/985a10d550493d60358b66434d1603/.command.trace: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/ad/f3ad56c0ea2a57065f2b27bb9fe438/.command.begin: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/ae/985a10d550493d60358b66434d1603/.command.out: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/ad/f3ad56c0ea2a57065f2b27bb9fe438/.command.err: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/ad/f3ad56c0ea2a57065f2b27bb9fe438/.command.log: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/ad/f3ad56c0ea2a57065f2b27bb9fe438/.command.out: Copied (new)
2026/05/29 18:38:42 INFO  : Logs_Intermediates/FastqGeneration/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna_S26_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/ad/f3ad56c0ea2a57065f2b27bb9fe438/.command.run: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/ad/f3ad56c0ea2a57065f2b27bb9fe438/.command.trace: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/a1/94478843f323dd98559c04082806ec/.command.out: Copied (new)
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2026/05/29 18:38:42 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/ad/f3ad56c0ea2a57065f2b27bb9fe438/.exitcode: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a9/9acadc35b3ad99f910aa7e3a48901d/.command.begin: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a9/9acadc35b3ad99f910aa7e3a48901d/.command.run: Copied (new)
2026/05/29 18:38:42 INFO  : Logs_Intermediates/nextflow_work_logs/50/d2c8b12d9abdebf5b8e944983f87c3/.command.log: Copied (new)
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2026/05/29 18:38:42 INFO  : Logs_Intermediates/nextflow_work_logs/50/d2c8b12d9abdebf5b8e944983f87c3/.command.env: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a9/9acadc35b3ad99f910aa7e3a48901d/Nirvana-20260529004927.log: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a9/9acadc35b3ad99f910aa7e3a48901d/.command.log: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a9/9acadc35b3ad99f910aa7e3a48901d/.command.trace: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a9/9acadc35b3ad99f910aa7e3a48901d/.command.err: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2c/dc6650b5ac60705a3a6a6c0b0f69b1/.command.err: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a9/9acadc35b3ad99f910aa7e3a48901d/.command.sh: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2c/dc6650b5ac60705a3a6a6c0b0f69b1/.command.run: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/98/3c4e9a4339f8daea9a1ed68629dfe5/.command.begin: Copied (new)
2026/05/29 18:38:42 INFO  : Logs_Intermediates/nextflow_work_logs/50/d2c8b12d9abdebf5b8e944983f87c3/.command.run: Copied (new)
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2026/05/29 18:38:42 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2c/dc6650b5ac60705a3a6a6c0b0f69b1/.command.out: Copied (new)
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2026/05/29 18:38:42 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/8a/2a2f27b465c3f2e59940d7a3f20b15/.command.begin: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/8a/2a2f27b465c3f2e59940d7a3f20b15/.command.err: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/98/3c4e9a4339f8daea9a1ed68629dfe5/.command.err: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2c/dc6650b5ac60705a3a6a6c0b0f69b1/.command.log: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2c/dc6650b5ac60705a3a6a6c0b0f69b1/.command.sh: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/98/3c4e9a4339f8daea9a1ed68629dfe5/.command.run: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/98/3c4e9a4339f8daea9a1ed68629dfe5/.exitcode: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/8a/2a2f27b465c3f2e59940d7a3f20b15/.command.run: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/98/3c4e9a4339f8daea9a1ed68629dfe5/.command.sh: Copied (new)
2026/05/29 18:38:42 INFO  : Logs_Intermediates/FastqGeneration/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna_S3_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/8a/2a2f27b465c3f2e59940d7a3f20b15/.command.out: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/8a/2a2f27b465c3f2e59940d7a3f20b15/.command.sh: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/8a/2a2f27b465c3f2e59940d7a3f20b15/.command.log: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/98/3c4e9a4339f8daea9a1ed68629dfe5/.command.trace: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/8a/2a2f27b465c3f2e59940d7a3f20b15/.exitcode: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/b8/585e6f0f7a3b395729fa59a9e5f0dd/.command.begin: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/98/3c4e9a4339f8daea9a1ed68629dfe5/gen_coverage_reports.log: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/8a/2a2f27b465c3f2e59940d7a3f20b15/.command.trace: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/8a/2a2f27b465c3f2e59940d7a3f20b15/Nirvana-20260529014535.log: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/b8/585e6f0f7a3b395729fa59a9e5f0dd/.command.err: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/b8/585e6f0f7a3b395729fa59a9e5f0dd/.command.run: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/86/25a87f237e4c4583487dcc5884ce13/LrCalculator/LrCalculator-20260529025316.log: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/b8/585e6f0f7a3b395729fa59a9e5f0dd/.command.log: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/b8/585e6f0f7a3b395729fa59a9e5f0dd/.command.sh: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/b8/585e6f0f7a3b395729fa59a9e5f0dd/.command.out: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a0/6c9cec0050320a8803aaa0e26d0f4e/Tmb/dragen_run_1780022138294_280034.log: Copied (new)
2026/05/29 18:38:42 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a5/f0babde5a779bc80ed4705a2b70c82/.command.out: Copied (new)
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2026/05/29 18:38:42 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/b8/585e6f0f7a3b395729fa59a9e5f0dd/.command.trace: Copied (new)
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2026/05/29 18:38:43 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a5/f0babde5a779bc80ed4705a2b70c82/.command.err: Copied (new)
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2026/05/29 18:38:43 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a5/f0babde5a779bc80ed4705a2b70c82/.command.log: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a5/f0babde5a779bc80ed4705a2b70c82/.command.trace: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/aa/9df1c1f7ab6affb56730460e2d5a01/.command.log: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a5/f0babde5a779bc80ed4705a2b70c82/.exitcode: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/aa/9df1c1f7ab6affb56730460e2d5a01/.command.run: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/aa/9df1c1f7ab6affb56730460e2d5a01/.exitcode: Copied (new)
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2026/05/29 18:38:43 INFO  : Logs_Intermediates/nextflow_work_logs/4a/d760b5c1a9a726242508d460834869/.command.env: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/a5/f0babde5a779bc80ed4705a2b70c82/.command.sh: Copied (new)
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2026/05/29 18:38:43 INFO  : Logs_Intermediates/nextflow_work_logs/4a/d760b5c1a9a726242508d460834869/.command.sh: Copied (new)
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2026/05/29 18:38:43 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/ad/80f636760d86de9b3f0cb770824bee/.command.begin: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/a2/d8209cc84af78c7d1177f9a2f44c57/.command.err: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/a2/d8209cc84af78c7d1177f9a2f44c57/.command.out: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/a2/d8209cc84af78c7d1177f9a2f44c57/.command.run: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/aa/9df1c1f7ab6affb56730460e2d5a01/.command.sh: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/a2/d8209cc84af78c7d1177f9a2f44c57/.command.trace: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/a2/d8209cc84af78c7d1177f9a2f44c57/.exitcode: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/a2/d8209cc84af78c7d1177f9a2f44c57/.command.log: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/ad/80f636760d86de9b3f0cb770824bee/.exitcode: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/ad/80f636760d86de9b3f0cb770824bee/.command.run: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/ad/80f636760d86de9b3f0cb770824bee/.command.log: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/ad/80f636760d86de9b3f0cb770824bee/.command.err: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/a1/f38e0140f8c427629cfe21ab817d8b/.command.out: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/a2/d8209cc84af78c7d1177f9a2f44c57/.command.sh: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/ad/80f636760d86de9b3f0cb770824bee/.command.trace: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/ad/80f636760d86de9b3f0cb770824bee/.command.out: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/a1/f38e0140f8c427629cfe21ab817d8b/.command.begin: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/ad/80f636760d86de9b3f0cb770824bee/.command.sh: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/a1/f38e0140f8c427629cfe21ab817d8b/.command.err: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/a1/f38e0140f8c427629cfe21ab817d8b/.command.log: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/a1/f38e0140f8c427629cfe21ab817d8b/.command.run: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/a1/f38e0140f8c427629cfe21ab817d8b/.command.sh: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/a1/f38e0140f8c427629cfe21ab817d8b/.exitcode: Copied (new)
2026/05/29 18:38:43 INFO  : Logs_Intermediates/nextflow_work_logs/4c/607fd7a3aef970dad6bb03c31f8dc5/.command.env: Copied (new)
2026/05/29 18:38:43 INFO  : Logs_Intermediates/nextflow_work_logs/4c/607fd7a3aef970dad6bb03c31f8dc5/.command.out: Copied (new)
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2026/05/29 18:38:43 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/a1/f38e0140f8c427629cfe21ab817d8b/.command.trace: Copied (new)
2026/05/29 18:38:43 INFO  : Logs_Intermediates/nextflow_work_logs/4c/607fd7a3aef970dad6bb03c31f8dc5/.command.run: Copied (new)
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2026/05/29 18:38:43 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/8f/3bad7cfd0a9c4570528c271db7294b/.command.err: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/8f/3bad7cfd0a9c4570528c271db7294b/.command.begin: Copied (new)
2026/05/29 18:38:43 INFO  : Logs_Intermediates/nextflow_work_logs/4c/607fd7a3aef970dad6bb03c31f8dc5/.command.err: Copied (new)
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2026/05/29 18:38:43 INFO  : Logs_Intermediates/nextflow_work_logs/4c/607fd7a3aef970dad6bb03c31f8dc5/.command.sh: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2f/d7f75941b2fa1933f3da7c8b044c12/.command.err: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2f/d7f75941b2fa1933f3da7c8b044c12/.command.log: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/8f/3bad7cfd0a9c4570528c271db7294b/.command.run: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2f/d7f75941b2fa1933f3da7c8b044c12/.command.out: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/8f/3bad7cfd0a9c4570528c271db7294b/.exitcode: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2f/d7f75941b2fa1933f3da7c8b044c12/.command.run: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/8f/3bad7cfd0a9c4570528c271db7294b/.command.trace: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/af/8410aae074af8a5708f6da8e1ba198/.command.begin: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/8f/3bad7cfd0a9c4570528c271db7294b/.command.log: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/8f/3bad7cfd0a9c4570528c271db7294b/.command.sh: Copied (new)
2026/05/29 18:38:43 INFO  : Logs_Intermediates/FastqGeneration/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna_S2_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/af/8410aae074af8a5708f6da8e1ba198/.command.err: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/8a/2c79054c31c2814ad2c2f47d3a298b/.command.out: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/8f/3bad7cfd0a9c4570528c271db7294b/Nirvana-20260529005108.log: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/af/8410aae074af8a5708f6da8e1ba198/.exitcode: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/af/8410aae074af8a5708f6da8e1ba198/.command.run: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/ab/d67f699cbd339330d7e3769d4a4ce3/.command.out: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/af/8410aae074af8a5708f6da8e1ba198/.command.trace: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/af/8410aae074af8a5708f6da8e1ba198/.command.sh: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2f/d7f75941b2fa1933f3da7c8b044c12/.command.sh: Copied (new)
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2026/05/29 18:38:43 INFO  : Logs_Intermediates/nextflow_work_logs/51/a99b2489ac7e33b7ca34b5a2942711/.command.log: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/af/8410aae074af8a5708f6da8e1ba198/.command.log: Copied (new)
2026/05/29 18:38:43 INFO  : Logs_Intermediates/nextflow_work_logs/51/a99b2489ac7e33b7ca34b5a2942711/.command.out: Copied (new)
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2026/05/29 18:38:43 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/b0/18a4c2338881be35ac20d1066afaea/.command.begin: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/b0/18a4c2338881be35ac20d1066afaea/.command.log: Copied (new)
2026/05/29 18:38:43 INFO  : Logs_Intermediates/nextflow_work_logs/51/a99b2489ac7e33b7ca34b5a2942711/.command.run: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/b0/18a4c2338881be35ac20d1066afaea/.exitcode: Copied (new)
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2026/05/29 18:38:43 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/b0/18a4c2338881be35ac20d1066afaea/.command.sh: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/b0/18a4c2338881be35ac20d1066afaea/.command.out: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/a7/d4e5db406028fe36e8fc07df577ea3/.command.begin: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/8f/a97e760f69694bbc3394917fbd9d6f/.command.out: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/b0/18a4c2338881be35ac20d1066afaea/.command.err: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/a4/3b9a3a48cbbae0ec268c8c6fea1dea/.command.log: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/a7/d4e5db406028fe36e8fc07df577ea3/.command.out: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/a7/d4e5db406028fe36e8fc07df577ea3/.command.trace: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/a7/d4e5db406028fe36e8fc07df577ea3/.exitcode: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/aa/e0cb6319be9925502a19efc7a5c871/.command.begin: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/a7/d4e5db406028fe36e8fc07df577ea3/.command.run: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/a7/d4e5db406028fe36e8fc07df577ea3/.command.err: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/aa/e0cb6319be9925502a19efc7a5c871/.command.err: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/aa/e0cb6319be9925502a19efc7a5c871/.command.out: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/a7/d4e5db406028fe36e8fc07df577ea3/.command.sh: Copied (new)
2026/05/29 18:38:43 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/b0/18a4c2338881be35ac20d1066afaea/.command.trace: Copied (new)
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2026/05/29 18:38:44 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/32/2c9612e9e8437e8a7b567e7eb078f9/.command.err: Copied (new)
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2026/05/29 18:38:44 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/34/1e9c51639f6e11c23d3e07c24f8b6c/.command.err: Copied (new)
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2026/05/29 18:38:44 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/98/bc21e865e9eaf77f0ba4667f47503b/.command.begin: Copied (new)
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2026/05/29 18:38:44 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/34/1e9c51639f6e11c23d3e07c24f8b6c/.command.log: Copied (new)
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2026/05/29 18:38:44 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/98/bc21e865e9eaf77f0ba4667f47503b/.command.run: Copied (new)
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2026/05/29 18:38:44 INFO  : Logs_Intermediates/FastqGeneration/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna_S2_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:38:44 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/b4/10776cee08a27b8e13ff47de1e5f71/Nirvana-20260529031226.log: Copied (new)
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2026/05/29 18:38:44 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/cb/7d73b2e839f3e88c34828490a67b0e/.command.out: Copied (new)
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2026/05/29 18:38:44 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/ab/c734f1650b2c99d1f6044bc7e89883/.command.out: Copied (new)
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2026/05/29 18:38:44 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/ab/c734f1650b2c99d1f6044bc7e89883/.command.sh: Copied (new)
2026/05/29 18:38:44 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/aa/7b27506e8ed9007611616fcb8fc59f/.command.err: Copied (new)
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2026/05/29 18:38:44 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/ab/c734f1650b2c99d1f6044bc7e89883/.command.trace: Copied (new)
2026/05/29 18:38:44 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/35/cc86cdfa62d3e3636de20f51ea6387/.command.err: Copied (new)
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2026/05/29 18:38:44 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/35/cc86cdfa62d3e3636de20f51ea6387/.command.sh: Copied (new)
2026/05/29 18:38:44 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/35/cc86cdfa62d3e3636de20f51ea6387/.command.run: Copied (new)
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2026/05/29 18:38:44 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/aa/7b27506e8ed9007611616fcb8fc59f/.command.out: Copied (new)
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2026/05/29 18:38:44 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/aa/7b27506e8ed9007611616fcb8fc59f/.exitcode: Copied (new)
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2026/05/29 18:38:44 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/35/cc86cdfa62d3e3636de20f51ea6387/.command.log: Copied (new)
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2026/05/29 18:38:44 INFO  : Logs_Intermediates/nextflow_work_logs/4a/f744bb3b3cceb109aad5671f96924f/.command.err: Copied (new)
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2026/05/29 18:38:45 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/35/cc86cdfa62d3e3636de20f51ea6387/.command.out: Copied (new)
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2026/05/29 18:38:45 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/32/baa2d34ee5fac2d6274509d01239a7/.command.err: Copied (new)
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2026/05/29 18:38:45 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/32/baa2d34ee5fac2d6274509d01239a7/.command.log: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/32/baa2d34ee5fac2d6274509d01239a7/.command.sh: Copied (new)
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2026/05/29 18:38:45 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/35/ed9e849731a1fb3e655c145094047a/.command.err: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/32/baa2d34ee5fac2d6274509d01239a7/.command.out: Copied (new)
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2026/05/29 18:38:45 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/35/ed9e849731a1fb3e655c145094047a/.command.env: Copied (new)
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2026/05/29 18:38:45 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/35/ed9e849731a1fb3e655c145094047a/.command.out: Copied (new)
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2026/05/29 18:38:45 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/9d/05a52824b2a748fe000fae4d9a83cb/.command.begin: Copied (new)
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2026/05/29 18:38:45 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/35/ed9e849731a1fb3e655c145094047a/.command.log: Copied (new)
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2026/05/29 18:38:45 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/9d/05a52824b2a748fe000fae4d9a83cb/.exitcode: Copied (new)
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2026/05/29 18:38:45 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/35/ed9e849731a1fb3e655c145094047a/.command.sh: Copied (new)
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2026/05/29 18:38:45 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/36/142bfcfcc65d64faffc904d4c4ff8e/.command.err: Copied (new)
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2026/05/29 18:38:45 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/35/ed9e849731a1fb3e655c145094047a/.command.run: Copied (new)
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2026/05/29 18:38:45 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/9d/05a52824b2a748fe000fae4d9a83cb/.command.sh: Copied (new)
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2026/05/29 18:38:45 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/36/142bfcfcc65d64faffc904d4c4ff8e/.command.sh: Copied (new)
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2026/05/29 18:38:45 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/36/142bfcfcc65d64faffc904d4c4ff8e/.command.out: Copied (new)
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2026/05/29 18:38:45 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/bb/783f51e78e16cb26a400ed1d4afa83/.command.begin: Copied (new)
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2026/05/29 18:38:45 INFO  : Logs_Intermediates/nextflow_work_logs/56/27092a1c1ecfdd47532e88effdc8ef/.command.log: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/be/723d661c96ffdb82a6ecb010592680/.command.begin: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/be/723d661c96ffdb82a6ecb010592680/.command.err: Copied (new)
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2026/05/29 18:38:45 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/bb/783f51e78e16cb26a400ed1d4afa83/.command.run: Copied (new)
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2026/05/29 18:38:45 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/be/723d661c96ffdb82a6ecb010592680/.exitcode: Copied (new)
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2026/05/29 18:38:45 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/bb/783f51e78e16cb26a400ed1d4afa83/.command.log: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/be/723d661c96ffdb82a6ecb010592680/.command.run: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/bb/783f51e78e16cb26a400ed1d4afa83/.command.trace: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/be/723d661c96ffdb82a6ecb010592680/.command.trace: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/35/fffa8e78b1ac1f6e7fe614b4b9a6f6/.command.err: Copied (new)
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2026/05/29 18:38:45 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/35/fffa8e78b1ac1f6e7fe614b4b9a6f6/.command.log: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/35/fffa8e78b1ac1f6e7fe614b4b9a6f6/.command.out: Copied (new)
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2026/05/29 18:38:45 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/35/fffa8e78b1ac1f6e7fe614b4b9a6f6/.command.run: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/36/4fee4211ed6b71c203a480ce7bbccc/.command.out: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/ae/31f72ee53123986dd3cf3e5d58f552/.command.begin: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/36/4fee4211ed6b71c203a480ce7bbccc/.command.err: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/ae/31f72ee53123986dd3cf3e5d58f552/.command.log: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/36/4fee4211ed6b71c203a480ce7bbccc/.command.run: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/35/fffa8e78b1ac1f6e7fe614b4b9a6f6/.command.sh: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/36/4fee4211ed6b71c203a480ce7bbccc/.command.sh: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/ae/31f72ee53123986dd3cf3e5d58f552/.command.sh: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/d7/945f0fe1cda0ce6a676a0035f5e4b9/.command.log: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/d7/945f0fe1cda0ce6a676a0035f5e4b9/.command.begin: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/ae/31f72ee53123986dd3cf3e5d58f552/.command.out: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/d7/945f0fe1cda0ce6a676a0035f5e4b9/.command.err: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/ae/31f72ee53123986dd3cf3e5d58f552/.command.err: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/36/4fee4211ed6b71c203a480ce7bbccc/.command.log: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/d7/945f0fe1cda0ce6a676a0035f5e4b9/.command.run: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/ae/31f72ee53123986dd3cf3e5d58f552/.command.run: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/d7/945f0fe1cda0ce6a676a0035f5e4b9/.command.out: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/ae/31f72ee53123986dd3cf3e5d58f552/.exitcode: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/d7/945f0fe1cda0ce6a676a0035f5e4b9/.command.trace: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/d7/945f0fe1cda0ce6a676a0035f5e4b9/.exitcode: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/d7/945f0fe1cda0ce6a676a0035f5e4b9/.command.sh: Copied (new)
2026/05/29 18:38:45 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/b2/db8faa44572e388bf0d37b0a64faa6/SampleSheetReader/ReaderService-20260529003355.log: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/37/a5610682b8cbcae13b1d2e48f96d38/.command.err: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/aa/e0cb6319be9925502a19efc7a5c871/Contamination/Spoiler-20260529032453.log: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/9d/cafc874f99e5d0e72e0087a12a4efd/.command.out: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/9d/cafc874f99e5d0e72e0087a12a4efd/.command.err: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/37/a5610682b8cbcae13b1d2e48f96d38/.command.log: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/9d/cafc874f99e5d0e72e0087a12a4efd/.exitcode: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/37/a5610682b8cbcae13b1d2e48f96d38/.command.sh: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/bf/408b5d093637d977146e32a502ae9a/.command.begin: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/bf/408b5d093637d977146e32a502ae9a/.command.out: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/bf/408b5d093637d977146e32a502ae9a/.command.err: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/9d/cafc874f99e5d0e72e0087a12a4efd/.command.sh: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/9d/cafc874f99e5d0e72e0087a12a4efd/.command.trace: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/9d/cafc874f99e5d0e72e0087a12a4efd/.command.begin: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/bf/408b5d093637d977146e32a502ae9a/.command.log: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/9d/cafc874f99e5d0e72e0087a12a4efd/Nirvana-20260529025243.log: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/37/a5610682b8cbcae13b1d2e48f96d38/.command.run: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/bf/408b5d093637d977146e32a502ae9a/.command.trace: Copied (new)
2026/05/29 18:38:46 INFO  : Logs_Intermediates/nextflow_work_logs/57/3dc4f37aae9c902950f7229200ef9c/.command.err: Copied (new)
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2026/05/29 18:38:46 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/bf/408b5d093637d977146e32a502ae9a/.command.run: Copied (new)
2026/05/29 18:38:46 INFO  : Logs_Intermediates/nextflow_work_logs/57/3dc4f37aae9c902950f7229200ef9c/.command.out: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/37/a5610682b8cbcae13b1d2e48f96d38/.command.out: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/bf/408b5d093637d977146e32a502ae9a/.exitcode: Copied (new)
2026/05/29 18:38:46 INFO  : Logs_Intermediates/nextflow_work_logs/57/3dc4f37aae9c902950f7229200ef9c/.command.log: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/9d/cafc874f99e5d0e72e0087a12a4efd/.command.log: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/bf/408b5d093637d977146e32a502ae9a/Nirvana-20260529030933.log: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/b0/a9874ae2cefdca1dca11e22173bba8/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/9d/cafc874f99e5d0e72e0087a12a4efd/.command.run: Copied (new)
2026/05/29 18:38:46 INFO  : Logs_Intermediates/nextflow_work_logs/57/3dc4f37aae9c902950f7229200ef9c/.command.sh: Copied (new)
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2026/05/29 18:38:46 INFO  : Logs_Intermediates/nextflow_work_logs/57/3dc4f37aae9c902950f7229200ef9c/.command.run: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/db/b432d637e03390527c4febc0bd864d/.command.begin: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/b0/a9874ae2cefdca1dca11e22173bba8/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/aa/5a40a52d1c1a803325e4e61b055c34/Contamination/Spoiler-20260529031021.log: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/db/b432d637e03390527c4febc0bd864d/.command.err: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/db/b432d637e03390527c4febc0bd864d/.command.log: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/db/b432d637e03390527c4febc0bd864d/.command.out: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/b0/a9874ae2cefdca1dca11e22173bba8/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/d7/eb943272658524a008972da48a7bdc/.command.begin: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/d7/eb943272658524a008972da48a7bdc/.command.log: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/d7/eb943272658524a008972da48a7bdc/.command.err: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/db/b432d637e03390527c4febc0bd864d/.command.run: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/9e/76248a0813469fd617f0ce8152c2bf/.command.begin: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/d7/eb943272658524a008972da48a7bdc/.command.run: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/db/b432d637e03390527c4febc0bd864d/.exitcode: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/db/b432d637e03390527c4febc0bd864d/.command.trace: Copied (new)
2026/05/29 18:38:46 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/9e/76248a0813469fd617f0ce8152c2bf/.command.err: Copied (new)
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2026/05/29 18:38:47 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3a/f9fed7f61275709dd5b7bb460272b2/.command.out: Copied (new)
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2026/05/29 18:38:47 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3a/f9fed7f61275709dd5b7bb460272b2/.command.log: Copied (new)
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2026/05/29 18:38:47 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/be/8d6291aa2d573f787c106bd444fe1e/.command.begin: Copied (new)
2026/05/29 18:38:47 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/be/8d6291aa2d573f787c106bd444fe1e/.command.err: Copied (new)
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2026/05/29 18:38:47 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3b/ba0d2e84c30f43d1222c9c565277a8/.command.log: Copied (new)
2026/05/29 18:38:47 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3b/ba0d2e84c30f43d1222c9c565277a8/.command.sh: Copied (new)
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2026/05/29 18:38:47 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3b/ba0d2e84c30f43d1222c9c565277a8/.command.err: Copied (new)
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2026/05/29 18:38:47 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3b/ba0d2e84c30f43d1222c9c565277a8/.command.out: Copied (new)
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2026/05/29 18:38:47 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3b/ba0d2e84c30f43d1222c9c565277a8/.command.run: Copied (new)
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2026/05/29 18:38:47 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/c6/188646117aca41507382f4afd58e27/.exitcode: Copied (new)
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2026/05/29 18:38:47 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/bf/41d45bb70ef4730d7d0ce325a67be0/.command.err: Copied (new)
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2026/05/29 18:38:47 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/bf/41d45bb70ef4730d7d0ce325a67be0/.exitcode: Copied (new)
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2026/05/29 18:38:47 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/b7/974233664a177ae514fedb18f465e6/.command.err: Copied (new)
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2026/05/29 18:38:47 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/b7/974233664a177ae514fedb18f465e6/.command.trace: Copied (new)
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2026/05/29 18:38:47 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/e2/2c1aaaeb86d4fe2c41cfe9c2d80265/.command.trace: Copied (new)
2026/05/29 18:38:47 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c3/e81111fd2ef7ff2ee5306c0540a1f7/.command.begin: Copied (new)
2026/05/29 18:38:47 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/b7/974233664a177ae514fedb18f465e6/.command.out: Copied (new)
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2026/05/29 18:38:47 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c3/e81111fd2ef7ff2ee5306c0540a1f7/.exitcode: Copied (new)
2026/05/29 18:38:47 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c3/e81111fd2ef7ff2ee5306c0540a1f7/.command.err: Copied (new)
2026/05/29 18:38:47 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/bf/abd946051cfd94093b658854ee5cc1/.command.begin: Copied (new)
2026/05/29 18:38:47 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c3/e81111fd2ef7ff2ee5306c0540a1f7/.command.out: Copied (new)
2026/05/29 18:38:47 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c3/e81111fd2ef7ff2ee5306c0540a1f7/.command.log: Copied (new)
2026/05/29 18:38:47 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/bf/abd946051cfd94093b658854ee5cc1/.command.err: Copied (new)
2026/05/29 18:38:47 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/bf/abd946051cfd94093b658854ee5cc1/.command.env: Copied (new)
2026/05/29 18:38:47 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c3/e81111fd2ef7ff2ee5306c0540a1f7/.command.run: Copied (new)
2026/05/29 18:38:47 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/bf/abd946051cfd94093b658854ee5cc1/.exitcode: Copied (new)
2026/05/29 18:38:47 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/bf/abd946051cfd94093b658854ee5cc1/.command.run: Copied (new)
2026/05/29 18:38:47 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c3/e81111fd2ef7ff2ee5306c0540a1f7/.command.sh: Copied (new)
2026/05/29 18:38:47 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/bf/abd946051cfd94093b658854ee5cc1/.command.trace: Copied (new)
2026/05/29 18:38:47 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c3/e81111fd2ef7ff2ee5306c0540a1f7/.command.trace: Copied (new)
2026/05/29 18:38:47 INFO  : Logs_Intermediates/nextflow_work_logs/5a/ae9ff331cb51ffb6857cfc4e8d3ed2/.command.log: Copied (new)
2026/05/29 18:38:47 INFO  : Logs_Intermediates/nextflow_work_logs/5a/ae9ff331cb51ffb6857cfc4e8d3ed2/.command.err: Copied (new)
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2026/05/29 18:38:47 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/bf/abd946051cfd94093b658854ee5cc1/.command.log: Copied (new)
2026/05/29 18:38:47 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/bf/abd946051cfd94093b658854ee5cc1/.command.out: Copied (new)
2026/05/29 18:38:47 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/ac/a287603a8938e8912e6aade970b83c/.command.begin: Copied (new)
2026/05/29 18:38:47 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/ac/a287603a8938e8912e6aade970b83c/.command.run: Copied (new)
2026/05/29 18:38:47 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/ac/a287603a8938e8912e6aade970b83c/.exitcode: Copied (new)
2026/05/29 18:38:47 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/ac/a287603a8938e8912e6aade970b83c/.command.sh: Copied (new)
2026/05/29 18:38:47 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/ac/a287603a8938e8912e6aade970b83c/.command.err: Copied (new)
2026/05/29 18:38:47 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/ac/a287603a8938e8912e6aade970b83c/.command.trace: Copied (new)
2026/05/29 18:38:47 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3b/c612e9a73984e9249a51bd386b8fe5/.command.err: Copied (new)
2026/05/29 18:38:47 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3b/c612e9a73984e9249a51bd386b8fe5/.command.log: Copied (new)
2026/05/29 18:38:47 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c3/da77dd1c605a5c39e42141e5a57976/.command.begin: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c3/da77dd1c605a5c39e42141e5a57976/.command.err: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3b/c612e9a73984e9249a51bd386b8fe5/.command.sh: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/ae/31f72ee53123986dd3cf3e5d58f552/Tmb/dragen_run_1780023214108_305817.log: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3b/c612e9a73984e9249a51bd386b8fe5/.command.run: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/ac/a287603a8938e8912e6aade970b83c/.command.out: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c3/da77dd1c605a5c39e42141e5a57976/.command.out: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/ae/31f72ee53123986dd3cf3e5d58f552/Tmb/dragen_syslog_1780023214100_305817.log: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/ac/a287603a8938e8912e6aade970b83c/.command.log: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c3/da77dd1c605a5c39e42141e5a57976/.command.log: Copied (new)
2026/05/29 18:38:48 INFO  : Logs_Intermediates/nextflow_work_logs/5a/bc056df0053e3f496697ddb17cbbc9/.command.err: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c3/da77dd1c605a5c39e42141e5a57976/.exitcode: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c3/da77dd1c605a5c39e42141e5a57976/.command.run: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c3/da77dd1c605a5c39e42141e5a57976/.command.sh: Copied (new)
2026/05/29 18:38:48 INFO  : Logs_Intermediates/nextflow_work_logs/5a/bc056df0053e3f496697ddb17cbbc9/.command.out: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c3/da77dd1c605a5c39e42141e5a57976/.command.trace: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c4/02cefa21b3ae2ff55727c908bafd86/.command.err: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c3/da77dd1c605a5c39e42141e5a57976/Nirvana-20260529025722.log: Copied (new)
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2026/05/29 18:38:48 INFO  : Logs_Intermediates/nextflow_work_logs/5a/bc056df0053e3f496697ddb17cbbc9/.command.log: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c4/02cefa21b3ae2ff55727c908bafd86/.command.out: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c4/02cefa21b3ae2ff55727c908bafd86/.exitcode: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c4/02cefa21b3ae2ff55727c908bafd86/.command.run: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3d/111a084c111a4d9805736ca90acd2f/.command.err: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c4/02cefa21b3ae2ff55727c908bafd86/.command.log: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c4/02cefa21b3ae2ff55727c908bafd86/.command.begin: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c4/02cefa21b3ae2ff55727c908bafd86/.command.trace: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3d/111a084c111a4d9805736ca90acd2f/.command.log: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3d/111a084c111a4d9805736ca90acd2f/.command.out: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c4/02cefa21b3ae2ff55727c908bafd86/Nirvana-20260529004305.log: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c4/02cefa21b3ae2ff55727c908bafd86/.command.sh: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3d/111a084c111a4d9805736ca90acd2f/.command.run: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/c8/bb419c3bf1afc578ba8bfbe9f80713/.command.begin: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/c8/bb419c3bf1afc578ba8bfbe9f80713/.command.err: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3b/c612e9a73984e9249a51bd386b8fe5/.command.out: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/c8/bb419c3bf1afc578ba8bfbe9f80713/.command.out: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/c8/bb419c3bf1afc578ba8bfbe9f80713/.command.run: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/eb/e399f23e0a9eb75a431b6621e39594/.command.begin: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/c8/bb419c3bf1afc578ba8bfbe9f80713/.exitcode: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/c8/bb419c3bf1afc578ba8bfbe9f80713/.command.sh: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3d/111a084c111a4d9805736ca90acd2f/.command.sh: Copied (new)
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2026/05/29 18:38:48 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/c8/bb419c3bf1afc578ba8bfbe9f80713/.command.log: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/c8/bb419c3bf1afc578ba8bfbe9f80713/.command.env: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/eb/e399f23e0a9eb75a431b6621e39594/.command.trace: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/eb/e399f23e0a9eb75a431b6621e39594/.command.sh: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/eb/e399f23e0a9eb75a431b6621e39594/.command.log: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/eb/e399f23e0a9eb75a431b6621e39594/.exitcode: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/e2/a92996cb55b6fcf06540d7d02c6ddf/.command.err: Copied (new)
2026/05/29 18:38:48 INFO  : Logs_Intermediates/nextflow_work_logs/5c/7d3b0fc36701d1f576c1454b7ad30d/.command.out: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/eb/e399f23e0a9eb75a431b6621e39594/.command.err: Copied (new)
2026/05/29 18:38:48 INFO  : Logs_Intermediates/nextflow_work_logs/5c/7d3b0fc36701d1f576c1454b7ad30d/.command.err: Copied (new)
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2026/05/29 18:38:48 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/e2/a92996cb55b6fcf06540d7d02c6ddf/.command.out: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/e2/a92996cb55b6fcf06540d7d02c6ddf/.command.begin: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/e2/a92996cb55b6fcf06540d7d02c6ddf/.command.log: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/e2/a92996cb55b6fcf06540d7d02c6ddf/.command.run: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/eb/e399f23e0a9eb75a431b6621e39594/.command.out: Copied (new)
2026/05/29 18:38:48 INFO  : Logs_Intermediates/nextflow_work_logs/5c/7d3b0fc36701d1f576c1454b7ad30d/.command.log: Copied (new)
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2026/05/29 18:38:48 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/e2/a92996cb55b6fcf06540d7d02c6ddf/.command.sh: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/e2/a92996cb55b6fcf06540d7d02c6ddf/.command.trace: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/b0/254377326c4511cc3098d9980d3e80/DnaDragenExonCnvCaller/dragen_run_1780021135091_234443.log: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c6/93aa8e7e333b86cd37c970fb94924f/.command.begin: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/9e/76248a0813469fd617f0ce8152c2bf/Tmb/dragen_run_1780023188994_312098.log: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c6/93aa8e7e333b86cd37c970fb94924f/.command.err: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c6/93aa8e7e333b86cd37c970fb94924f/.command.sh: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c6/93aa8e7e333b86cd37c970fb94924f/.exitcode: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c4/4f2147154188d7f786c17010a11ec2/.command.begin: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c6/93aa8e7e333b86cd37c970fb94924f/.command.trace: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c4/4f2147154188d7f786c17010a11ec2/.command.err: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c4/4f2147154188d7f786c17010a11ec2/.command.log: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c6/93aa8e7e333b86cd37c970fb94924f/.command.run: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c4/4f2147154188d7f786c17010a11ec2/.command.out: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c6/93aa8e7e333b86cd37c970fb94924f/.command.log: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c6/93aa8e7e333b86cd37c970fb94924f/.command.out: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c4/4f2147154188d7f786c17010a11ec2/.exitcode: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c4/4f2147154188d7f786c17010a11ec2/Nirvana-20260529031223.log: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/9e/76248a0813469fd617f0ce8152c2bf/Tmb/dragen_syslog_1780023188987_312098.log: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c4/4f2147154188d7f786c17010a11ec2/.command.trace: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/b0/254377326c4511cc3098d9980d3e80/DnaDragenExonCnvCaller/dragen_syslog_1780021135083_234443.log: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c4/4f2147154188d7f786c17010a11ec2/.command.run: Copied (new)
2026/05/29 18:38:48 INFO  : Logs_Intermediates/nextflow_work_logs/5a/dc8e23148381f2bf2df16ee8c03569/.command.err: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/c1/364606201b2b0a64d9bac72efcd1df/Contamination/Spoiler-20260529025047.log: Copied (new)
2026/05/29 18:38:48 INFO  : Logs_Intermediates/nextflow_work_logs/5d/3a30d97c0a3b42f309e21a6f17beea/.command.sh: Copied (new)
2026/05/29 18:38:48 INFO  : Logs_Intermediates/nextflow_work_logs/5a/dc8e23148381f2bf2df16ee8c03569/.command.out: Copied (new)
2026/05/29 18:38:48 INFO  : Logs_Intermediates/nextflow_work_logs/5a/dc8e23148381f2bf2df16ee8c03569/.command.run: Copied (new)
2026/05/29 18:38:48 INFO  : Logs_Intermediates/nextflow_work_logs/5a/dc8e23148381f2bf2df16ee8c03569/.command.log: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/be/9ed26ce19cb0955056d8bf716214bd/.command.err: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/be/9ed26ce19cb0955056d8bf716214bd/.command.out: Copied (new)
2026/05/29 18:38:48 INFO  : Logs_Intermediates/nextflow_work_logs/5d/3a30d97c0a3b42f309e21a6f17beea/.command.out: Copied (new)
2026/05/29 18:38:48 INFO  : Logs_Intermediates/nextflow_work_logs/5a/dc8e23148381f2bf2df16ee8c03569/.command.sh: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/be/9ed26ce19cb0955056d8bf716214bd/.command.begin: Copied (new)
2026/05/29 18:38:48 INFO  : Logs_Intermediates/nextflow_work_logs/5d/3a30d97c0a3b42f309e21a6f17beea/.command.err: Copied (new)
2026/05/29 18:38:48 INFO  : Logs_Intermediates/nextflow_work_logs/5d/3a30d97c0a3b42f309e21a6f17beea/.command.log: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/be/9ed26ce19cb0955056d8bf716214bd/.command.sh: Copied (new)
2026/05/29 18:38:48 INFO  : Logs_Intermediates/nextflow_work_logs/5d/3a30d97c0a3b42f309e21a6f17beea/.command.run: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/be/9ed26ce19cb0955056d8bf716214bd/.command.log: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/be/9ed26ce19cb0955056d8bf716214bd/.exitcode: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c6/349732e4868a6a28a5caeb35f7e0ce/.command.begin: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/be/9ed26ce19cb0955056d8bf716214bd/Nirvana-20260529025311.log: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/be/9ed26ce19cb0955056d8bf716214bd/.command.run: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c6/349732e4868a6a28a5caeb35f7e0ce/.command.err: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/be/9ed26ce19cb0955056d8bf716214bd/.command.trace: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c6/349732e4868a6a28a5caeb35f7e0ce/.command.log: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c6/349732e4868a6a28a5caeb35f7e0ce/.exitcode: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c6/349732e4868a6a28a5caeb35f7e0ce/.command.out: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c6/349732e4868a6a28a5caeb35f7e0ce/.command.run: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c6/349732e4868a6a28a5caeb35f7e0ce/.command.sh: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3d/3752369fb44b742b6431163da12b07/.command.err: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3d/3752369fb44b742b6431163da12b07/.command.sh: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/cb/585e73ee9e6c466f0d2f79a02bd946/.command.begin: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/cb/585e73ee9e6c466f0d2f79a02bd946/.command.err: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c4/4f2147154188d7f786c17010a11ec2/.command.sh: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c6/349732e4868a6a28a5caeb35f7e0ce/1267_0-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3d/3752369fb44b742b6431163da12b07/.command.run: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/cb/585e73ee9e6c466f0d2f79a02bd946/.command.out: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c6/349732e4868a6a28a5caeb35f7e0ce/.command.trace: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/cb/585e73ee9e6c466f0d2f79a02bd946/.command.log: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/d6/be0b3e1adf1ba703f811edc0102135/.command.out: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/cb/585e73ee9e6c466f0d2f79a02bd946/.exitcode: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/cb/585e73ee9e6c466f0d2f79a02bd946/.command.sh: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/cb/585e73ee9e6c466f0d2f79a02bd946/.command.trace: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3d/3752369fb44b742b6431163da12b07/.command.log: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3e/3507127678349580f40e4dde4aa245/.command.err: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3d/3752369fb44b742b6431163da12b07/.command.out: Copied (new)
2026/05/29 18:38:48 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3e/3507127678349580f40e4dde4aa245/.command.out: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/cb/585e73ee9e6c466f0d2f79a02bd946/.command.run: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3e/3507127678349580f40e4dde4aa245/.command.run: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/c5/c2f10e4bd750dbc37ccae5f61cef0e/.command.begin: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3e/3507127678349580f40e4dde4aa245/.command.log: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3e/3507127678349580f40e4dde4aa245/.command.sh: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/c5/c2f10e4bd750dbc37ccae5f61cef0e/.command.err: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/cb/585e73ee9e6c466f0d2f79a02bd946/Nirvana-20260529023722.log: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c6/fcacaabec35f1d9e51ca9bbab92fa5/.command.begin: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/c5/c2f10e4bd750dbc37ccae5f61cef0e/.exitcode: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c6/fcacaabec35f1d9e51ca9bbab92fa5/.command.log: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/c5/c2f10e4bd750dbc37ccae5f61cef0e/.command.log: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/c5/c2f10e4bd750dbc37ccae5f61cef0e/.command.out: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c6/fcacaabec35f1d9e51ca9bbab92fa5/.command.err: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/c5/c2f10e4bd750dbc37ccae5f61cef0e/.command.trace: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c6/fcacaabec35f1d9e51ca9bbab92fa5/.exitcode: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c6/fcacaabec35f1d9e51ca9bbab92fa5/.command.out: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c6/fcacaabec35f1d9e51ca9bbab92fa5/.command.trace: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/c5/c2f10e4bd750dbc37ccae5f61cef0e/.command.run: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/c5/c2f10e4bd750dbc37ccae5f61cef0e/.command.sh: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c2/16e3406585924eca12101ec011544b/Tmb/dragen_syslog_1780024337093_325737.log: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c8/c593de704261ae5eaf60c70a14d2d7/.command.begin: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c6/fcacaabec35f1d9e51ca9bbab92fa5/.command.sh: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c2/16e3406585924eca12101ec011544b/Tmb/dragen_run_1780024337101_325737.log: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/a7/3b0cc395b4b5f6d93fd4825b123d3f/Tmb/dragen_run_1780022996396_302784.log: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c8/c593de704261ae5eaf60c70a14d2d7/.command.err: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/a7/3b0cc395b4b5f6d93fd4825b123d3f/Tmb/dragen_syslog_1780022996389_302784.log: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c8/c593de704261ae5eaf60c70a14d2d7/.exitcode: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c8/c593de704261ae5eaf60c70a14d2d7/.command.trace: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/cc/3b5b1b848a67a80c5a9dab948370ba/.command.begin: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c6/fcacaabec35f1d9e51ca9bbab92fa5/.command.run: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c8/c593de704261ae5eaf60c70a14d2d7/.command.log: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c8/c593de704261ae5eaf60c70a14d2d7/.command.sh: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c8/c593de704261ae5eaf60c70a14d2d7/.command.run: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/cc/3b5b1b848a67a80c5a9dab948370ba/.command.err: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/cc/3b5b1b848a67a80c5a9dab948370ba/.command.sh: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c8/c593de704261ae5eaf60c70a14d2d7/.command.out: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/cc/3b5b1b848a67a80c5a9dab948370ba/.exitcode: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c7/38a3166190a16e159cd4300f26706d/.command.begin: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/cc/3b5b1b848a67a80c5a9dab948370ba/.command.log: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/cc/3b5b1b848a67a80c5a9dab948370ba/.command.run: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c7/38a3166190a16e159cd4300f26706d/.command.log: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c7/38a3166190a16e159cd4300f26706d/.command.out: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c7/38a3166190a16e159cd4300f26706d/.command.run: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c7/38a3166190a16e159cd4300f26706d/.command.err: Copied (new)
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2026/05/29 18:38:49 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.bam: Multi-thread Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3f/7e5c2f3898804d1d4f1763a7f99957/.command.err: Copied (new)
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2026/05/29 18:38:49 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3f/7e5c2f3898804d1d4f1763a7f99957/.command.out: Copied (new)
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2026/05/29 18:38:49 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/cb/869e6a9837e7edf8fd1ed64f6f66be/.command.begin: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/cb/869e6a9837e7edf8fd1ed64f6f66be/.command.err: Copied (new)
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2026/05/29 18:38:49 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/cb/869e6a9837e7edf8fd1ed64f6f66be/.command.trace: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/cb/869e6a9837e7edf8fd1ed64f6f66be/.exitcode: Copied (new)
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2026/05/29 18:38:49 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/40/2267d0891975403c9d96c0da18c33c/.command.err: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/40/2267d0891975403c9d96c0da18c33c/.command.log: Copied (new)
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2026/05/29 18:38:49 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/cb/869e6a9837e7edf8fd1ed64f6f66be/.command.run: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/cf/d5d10aede2cfe0747b38ba6eb0cc49/.command.err: Copied (new)
2026/05/29 18:38:49 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/40/2267d0891975403c9d96c0da18c33c/.command.out: Copied (new)
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2026/05/29 18:38:49 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/cf/d5d10aede2cfe0747b38ba6eb0cc49/.exitcode: Copied (new)
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2026/05/29 18:38:49 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/cf/d5d10aede2cfe0747b38ba6eb0cc49/.command.sh: Copied (new)
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2026/05/29 18:38:49 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/40/2267d0891975403c9d96c0da18c33c/.command.sh: Copied (new)
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2026/05/29 18:38:49 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/40/2267d0891975403c9d96c0da18c33c/.command.run: Copied (new)
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2026/05/29 18:38:49 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/cc/8f7e60a781d8225d4732089f65a697/.exitcode: Copied (new)
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2026/05/29 18:38:50 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/41/3563c7e86af23761080160ebfcb962/.command.err: Copied (new)
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2026/05/29 18:38:50 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/42/0f04a2dd45d6c21d87a630adb02b51/.command.err: Copied (new)
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2026/05/29 18:38:50 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/cf/5b0920258f33673ff12edbf0b4498a/.command.begin: Copied (new)
2026/05/29 18:38:50 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/ac/a287603a8938e8912e6aade970b83c/Gis/dragen_run_1780022619501_289360.log: Copied (new)
2026/05/29 18:38:50 INFO  : Logs_Intermediates/nextflow_work_logs/5e/c59aeb0a527566d71d00e18a86baf6/.command.log: Copied (new)
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2026/05/29 18:38:50 INFO  : Logs_Intermediates/nextflow_work_logs/60/fd34fb6d8e3a21bf84b8871f9d5084/.command.log: Copied (new)
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2026/05/29 18:38:50 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/cc/12244297abd32b6447018733d44103/.command.err: Copied (new)
2026/05/29 18:38:50 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c3/e81111fd2ef7ff2ee5306c0540a1f7/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:38:50 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/41/a4a10b9fd0dcdd40fc6b2a5b3d9cd7/.command.err: Copied (new)
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2026/05/29 18:38:50 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/c8/dbd92526b7bdba0f38349ff65a19f4/.command.err: Copied (new)
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2026/05/29 18:38:50 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/41/3563c7e86af23761080160ebfcb962/.command.log: Copied (new)
2026/05/29 18:38:50 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/42/de789ca5a04dd4b6230642e59cab0a/.command.env: Copied (new)
2026/05/29 18:38:50 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/ca/94663dd30cfd97ef61da9ae7387d6d/.command.err: Copied (new)
2026/05/29 18:38:50 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c6/93aa8e7e333b86cd37c970fb94924f/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/05/29 18:38:50 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c6/349732e4868a6a28a5caeb35f7e0ce/Contamination/Spoiler-20260529032453.log: Copied (new)
2026/05/29 18:38:50 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/d1/ad969379345e0c1721d6954bd3d7cc/.command.err: Copied (new)
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2026/05/29 18:38:50 INFO  : Logs_Intermediates/nextflow_work_logs/61/cb63b603b6db1a99c8ecfe1d5b8178/.command.log: Copied (new)
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2026/05/29 18:38:50 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/d8/6844b8a64ffe6e988d7707034ba4d1/.command.begin: Copied (new)
2026/05/29 18:38:50 INFO  : Logs_Intermediates/nextflow_work_logs/60/fd34fb6d8e3a21bf84b8871f9d5084/.command.out: Copied (new)
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2026/05/29 18:38:50 INFO  : Logs_Intermediates/nextflow_work_logs/62/a116fed9b41b44334014483994174e/.command.err: Copied (new)
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2026/05/29 18:38:50 INFO  : Logs_Intermediates/nextflow_work_logs/5e/c59aeb0a527566d71d00e18a86baf6/.command.out: Copied (new)
2026/05/29 18:38:50 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/42/0f04a2dd45d6c21d87a630adb02b51/.command.log: Copied (new)
2026/05/29 18:38:50 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/d2/ca1736f62bc2f9a02f4457e8785d01/.command.env: Copied (new)
2026/05/29 18:38:50 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/d3/0ec0aaa6224b2269414cd3e6b820a8/.command.err: Copied (new)
2026/05/29 18:38:50 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c6/93aa8e7e333b86cd37c970fb94924f/DnaDragenCaller/1267_E3-T1-TDNA-1_HLNMCDRX7_1_dna.pcr-model.log: Copied (new)
2026/05/29 18:38:50 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/d3/0a50e3ef94f7fd4d26771c5c3faf1d/.command.err: Copied (new)
2026/05/29 18:38:50 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/43/a37a4cb5c08ba00e31fc041fb5ad4b/.command.err: Copied (new)
2026/05/29 18:38:50 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/c3/e81111fd2ef7ff2ee5306c0540a1f7/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/05/29 18:38:50 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/cc/cafda260beae30c3227067333f4cfc/.command.err: Copied (new)
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2026/05/29 18:38:50 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/d1/ad969379345e0c1721d6954bd3d7cc/.command.log: Copied (new)
2026/05/29 18:38:50 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/cc/12244297abd32b6447018733d44103/.command.log: Copied (new)
2026/05/29 18:38:50 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/41/a4a10b9fd0dcdd40fc6b2a5b3d9cd7/.command.log: Copied (new)
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2026/05/29 18:38:50 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/42/de789ca5a04dd4b6230642e59cab0a/.command.err: Copied (new)
2026/05/29 18:38:50 INFO  : Logs_Intermediates/nextflow_work_logs/61/cb63b603b6db1a99c8ecfe1d5b8178/.command.out: Copied (new)
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2026/05/29 18:38:50 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/d0/ebe99fd7eb2c599f05693fe0d3c799/.command.out: Copied (new)
2026/05/29 18:38:50 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/d4/1029f5c91ccf7ffd1b44acdcff27ab/.command.err: Copied (new)
2026/05/29 18:38:50 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/cd/b2419bd6fdbc142571cfd3ba3ec2d3/.command.begin: Copied (new)
2026/05/29 18:38:50 INFO  : Logs_Intermediates/nextflow_work_logs/60/fd34fb6d8e3a21bf84b8871f9d5084/.command.run: Copied (new)
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2026/05/29 18:38:50 INFO  : Logs_Intermediates/nextflow_work_logs/62/3dfbeaf98eefac1e25291d6a2bd276/.command.err: Copied (new)
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2026/05/29 18:38:50 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/d3/0ec0aaa6224b2269414cd3e6b820a8/.command.log: Copied (new)
2026/05/29 18:38:50 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/d2/ca1736f62bc2f9a02f4457e8785d01/.command.err: Copied (new)
2026/05/29 18:38:50 INFO  : Logs_Intermediates/nextflow_work_logs/5e/c59aeb0a527566d71d00e18a86baf6/.command.run: Copied (new)
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2026/05/29 18:38:50 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/42/0f04a2dd45d6c21d87a630adb02b51/.command.out: Copied (new)
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2026/05/29 18:38:50 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/cf/5b0920258f33673ff12edbf0b4498a/.command.log: Copied (new)
2026/05/29 18:38:50 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/41/a4a10b9fd0dcdd40fc6b2a5b3d9cd7/.command.out: Copied (new)
2026/05/29 18:38:50 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/43/a37a4cb5c08ba00e31fc041fb5ad4b/.command.log: Copied (new)
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2026/05/29 18:38:50 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/41/3563c7e86af23761080160ebfcb962/.command.run: Copied (new)
2026/05/29 18:38:50 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/d1/5a131bb33befbb7902fe32986e7038/.command.log: Copied (new)
2026/05/29 18:38:50 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/42/de789ca5a04dd4b6230642e59cab0a/.command.log: Copied (new)
2026/05/29 18:38:50 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/d1/ad969379345e0c1721d6954bd3d7cc/.command.out: Copied (new)
2026/05/29 18:38:50 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/cc/cafda260beae30c3227067333f4cfc/.command.log: Copied (new)
2026/05/29 18:38:50 INFO  : Logs_Intermediates/nextflow_work_logs/61/cb63b603b6db1a99c8ecfe1d5b8178/.command.run: Copied (new)
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2026/05/29 18:38:50 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/c6/fcacaabec35f1d9e51ca9bbab92fa5/Tmb/dragen_syslog_1780023433450_316841.log: Copied (new)
2026/05/29 18:38:50 INFO  : Logs_Intermediates/nextflow_work_logs/60/fd34fb6d8e3a21bf84b8871f9d5084/.command.sh: Copied (new)
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2026/05/29 18:38:50 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/cd/b2419bd6fdbc142571cfd3ba3ec2d3/.command.err: Copied (new)
2026/05/29 18:38:50 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/dc/62b5aa34e9bc2c63daa5ea3ec23a2a/.command.log: Copied (new)
2026/05/29 18:38:50 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/42/0f04a2dd45d6c21d87a630adb02b51/.command.run: Copied (new)
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2026/05/29 18:38:50 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/cc/12244297abd32b6447018733d44103/.command.out: Copied (new)
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2026/05/29 18:38:50 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/d3/0ec0aaa6224b2269414cd3e6b820a8/.command.out: Copied (new)
2026/05/29 18:38:50 INFO  : Logs_Intermediates/nextflow_work_logs/5e/c59aeb0a527566d71d00e18a86baf6/.command.sh: Copied (new)
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2026/05/29 18:38:50 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/cc/12244297abd32b6447018733d44103/.command.run: Copied (new)
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2026/05/29 18:38:50 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/cc/cafda260beae30c3227067333f4cfc/.command.out: Copied (new)
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2026/05/29 18:38:51 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/44/206b4b250b2b772022116e6ca66819/.command.err: Copied (new)
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2026/05/29 18:38:51 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/cc/8f7e60a781d8225d4732089f65a697/Tmb/dragen_run_1780022103278_278455.log: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/e2/2c1aaaeb86d4fe2c41cfe9c2d80265/.command.log: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/43/e1bcab4e0acdbe81230a67d2ae6330/.command.log: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/dd/7b3b2b3cebd5b5bc48d2f7bc1cb4c5/.command.begin: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/d8/6844b8a64ffe6e988d7707034ba4d1/.command.trace: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/d0/04087633f819a39c53ddf3f0c82bfc/.command.err: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/db/386a6920f9e478cc1f3d656a922bf3/.command.out: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/dc/05c15deb415eaa02f612fcef127641/.command.log: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/d3/0a50e3ef94f7fd4d26771c5c3faf1d/.exitcode: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/d6/e95bea30389f1667cf09c25710ef6e/.command.begin: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/cf/5b0920258f33673ff12edbf0b4498a/.exitcode: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/d6/2e286173b188f211a9d5bad33c9c21/.command.log: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/d2/ca1736f62bc2f9a02f4457e8785d01/.command.trace: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/cd/d2420f04618fab113a0611e9788c65/.command.err: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/d9/617a0d612853f643d5c8f40f43f112/.command.begin: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/dd/7cc7e78a08417e6c08ec4c2ca284f8/.command.begin: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/cc/cafda260beae30c3227067333f4cfc/.exitcode: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/d1/5a131bb33befbb7902fe32986e7038/.exitcode: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/ca/94663dd30cfd97ef61da9ae7387d6d/gen_coverage_reports.log: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/d1/b6de7b62d29e28f60b3fe70cd7f360/.command.out: Copied (new)
2026/05/29 18:38:51 INFO  : Logs_Intermediates/nextflow_work_logs/63/cae376e9856c6103e4969e0d58488a/.command.out: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/d4/1029f5c91ccf7ffd1b44acdcff27ab/.exitcode: Copied (new)
2026/05/29 18:38:51 INFO  : Logs_Intermediates/nextflow_work_logs/61/fcc3b7a8e25d7945f9f273ea23ffb2/.command.log: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/cc/3b5b1b848a67a80c5a9dab948370ba/DnaDragenCaller/dragen_syslog_1780017834680_117083.log: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/da/64614382dfe62a11ee923998e65101/.command.begin: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/cc/8f7e60a781d8225d4732089f65a697/Tmb/dragen_syslog_1780022103270_278455.log: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/43/e1bcab4e0acdbe81230a67d2ae6330/.command.out: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/45/60004cc1caa68c46f0431789b125a7/.command.err: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/d8/6844b8a64ffe6e988d7707034ba4d1/.exitcode: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/cd/b2419bd6fdbc142571cfd3ba3ec2d3/.command.trace: Copied (new)
2026/05/29 18:38:51 INFO  : Logs_Intermediates/nextflow_work_logs/67/ca7f3be42472e96ab7558b520c8ddc/.command.err: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/44/206b4b250b2b772022116e6ca66819/.command.log: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/d1/c0e838268118f4779eaa8fba0f74ba/.command.begin: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/dd/7b3b2b3cebd5b5bc48d2f7bc1cb4c5/.command.err: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/44/70ad375c5420bd2e00d1c8d2e4d94a/.command.err: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/d2/ca1736f62bc2f9a02f4457e8785d01/.exitcode: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/d6/2e286173b188f211a9d5bad33c9c21/.command.out: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/d6/e95bea30389f1667cf09c25710ef6e/.command.err: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/dc/05c15deb415eaa02f612fcef127641/.command.out: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/d0/04087633f819a39c53ddf3f0c82bfc/.command.log: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/e0/289ee5bded416226ceff4dc6f07c56/.command.begin: Copied (new)
2026/05/29 18:38:51 INFO  : Logs_Intermediates/nextflow_work_logs/65/9ee9f7fc5b18c64fe50709c08f216c/.command.log: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/d9/617a0d612853f643d5c8f40f43f112/.command.err: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/dd/7cc7e78a08417e6c08ec4c2ca284f8/.command.err: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/47/6b9fad8577d89573527c1842c96c00/.command.err: Copied (new)
2026/05/29 18:38:51 INFO  : Logs_Intermediates/nextflow_work_logs/68/0f234b895a8d0753d3275b09ad4460/.command.err: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/44/206b4b250b2b772022116e6ca66819/.command.out: Copied (new)
2026/05/29 18:38:51 INFO  : Logs_Intermediates/nextflow_work_logs/63/cae376e9856c6103e4969e0d58488a/.command.run: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/d1/b6de7b62d29e28f60b3fe70cd7f360/.command.run: Copied (new)
2026/05/29 18:38:51 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/d0/618ac89b5594c830d74748b73521c9/.command.begin: Copied (new)
2026/05/29 18:38:51 INFO  : Logs_Intermediates/nextflow_work_logs/67/ca7f3be42472e96ab7558b520c8ddc/.command.log: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/db/386a6920f9e478cc1f3d656a922bf3/.command.run: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/cd/d2420f04618fab113a0611e9788c65/.command.log: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/d4/1029f5c91ccf7ffd1b44acdcff27ab/Nirvana-20260529005222.log: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/d1/c0e838268118f4779eaa8fba0f74ba/.command.err: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/da/64614382dfe62a11ee923998e65101/.command.err: Copied (new)
2026/05/29 18:38:52 INFO  : Logs_Intermediates/nextflow_work_logs/65/9ee9f7fc5b18c64fe50709c08f216c/.command.out: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/d1/5a131bb33befbb7902fe32986e7038/Nirvana-20260529031224.log: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/cc/cafda260beae30c3227067333f4cfc/Nirvana-20260529025105.log: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/df/8686fed448467a64d9c553deb36bfb/.command.begin: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/d2/af6f7db740fae3d037c21225f3e2d4/.command.begin: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/43/e1bcab4e0acdbe81230a67d2ae6330/.command.run: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/d0/04087633f819a39c53ddf3f0c82bfc/.command.out: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/45/60004cc1caa68c46f0431789b125a7/.command.log: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/dc/05c15deb415eaa02f612fcef127641/.command.run: Copied (new)
2026/05/29 18:38:52 INFO  : Logs_Intermediates/nextflow_work_logs/61/fcc3b7a8e25d7945f9f273ea23ffb2/.command.out: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/cd/b2419bd6fdbc142571cfd3ba3ec2d3/.exitcode: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/db/386a6920f9e478cc1f3d656a922bf3/.command.sh: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/e0/289ee5bded416226ceff4dc6f07c56/.command.err: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/d9/617a0d612853f643d5c8f40f43f112/.command.log: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/dd/7cc7e78a08417e6c08ec4c2ca284f8/.command.log: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/d6/2e286173b188f211a9d5bad33c9c21/.command.run: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/44/70ad375c5420bd2e00d1c8d2e4d94a/.command.log: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/cd/d2420f04618fab113a0611e9788c65/.command.out: Copied (new)
2026/05/29 18:38:52 INFO  : Logs_Intermediates/nextflow_work_logs/63/cae376e9856c6103e4969e0d58488a/.command.sh: Copied (new)
2026/05/29 18:38:52 INFO  : Logs_Intermediates/nextflow_work_logs/61/fcc3b7a8e25d7945f9f273ea23ffb2/.command.run: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/d6/e95bea30389f1667cf09c25710ef6e/.command.log: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/d1/b6de7b62d29e28f60b3fe70cd7f360/.command.sh: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/d0/618ac89b5594c830d74748b73521c9/.command.err: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/47/6b9fad8577d89573527c1842c96c00/.command.log: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/e1/ec758fc784c9a4795fc10dadead4ff/.command.begin: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/dd/9c55fa42729222064de3e81631d411/.command.begin: Copied (new)
2026/05/29 18:38:52 INFO  : Logs_Intermediates/nextflow_work_logs/68/0f234b895a8d0753d3275b09ad4460/.command.log: Copied (new)
2026/05/29 18:38:52 INFO  : Logs_Intermediates/nextflow_work_logs/67/ca7f3be42472e96ab7558b520c8ddc/.command.out: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/d1/c0e838268118f4779eaa8fba0f74ba/.command.log: Copied (new)
2026/05/29 18:38:52 INFO  : Logs_Intermediates/nextflow_work_logs/65/9ee9f7fc5b18c64fe50709c08f216c/.command.run: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/cd/b2419bd6fdbc142571cfd3ba3ec2d3/Nirvana-20260529025032.log: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/df/8686fed448467a64d9c553deb36bfb/.command.err: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/da/64614382dfe62a11ee923998e65101/.command.log: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/45/60004cc1caa68c46f0431789b125a7/.command.out: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/44/206b4b250b2b772022116e6ca66819/.command.run: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/48/0bacceb9cb23b5ae459045167be599/.command.err: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/e4/97c7799424623b6438482015f94503/.command.begin: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/d6/2e286173b188f211a9d5bad33c9c21/.command.sh: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/d0/04087633f819a39c53ddf3f0c82bfc/.command.run: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/d2/af6f7db740fae3d037c21225f3e2d4/.command.err: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/dd/7b3b2b3cebd5b5bc48d2f7bc1cb4c5/.command.out: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/dd/7b3b2b3cebd5b5bc48d2f7bc1cb4c5/.command.log: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/d6/e95bea30389f1667cf09c25710ef6e/.command.out: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/db/386a6920f9e478cc1f3d656a922bf3/.command.trace: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/dd/7cc7e78a08417e6c08ec4c2ca284f8/.command.out: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/dc/05c15deb415eaa02f612fcef127641/.command.sh: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/d9/617a0d612853f643d5c8f40f43f112/.command.out: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/44/70ad375c5420bd2e00d1c8d2e4d94a/.command.out: Copied (new)
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2026/05/29 18:38:52 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/48/0bacceb9cb23b5ae459045167be599/.command.log: Copied (new)
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2026/05/29 18:38:52 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/45/60004cc1caa68c46f0431789b125a7/.command.run: Copied (new)
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2026/05/29 18:38:52 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/44/70ad375c5420bd2e00d1c8d2e4d94a/.command.run: Copied (new)
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2026/05/29 18:38:52 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/d6/e95bea30389f1667cf09c25710ef6e/.command.run: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/d1/b6de7b62d29e28f60b3fe70cd7f360/.exitcode: Copied (new)
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2026/05/29 18:38:52 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/d9/617a0d612853f643d5c8f40f43f112/.command.run: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/dd/7cc7e78a08417e6c08ec4c2ca284f8/.command.run: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/47/6b9fad8577d89573527c1842c96c00/.command.run: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/cd/d2420f04618fab113a0611e9788c65/.command.sh: Copied (new)
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2026/05/29 18:38:52 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/dd/9c55fa42729222064de3e81631d411/.command.log: Copied (new)
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2026/05/29 18:38:52 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/d6/2e286173b188f211a9d5bad33c9c21/.exitcode: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/e1/ec758fc784c9a4795fc10dadead4ff/.command.log: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/db/d4c882e5d3af7a6f823ec3f96cbabd/.command.err: Copied (new)
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2026/05/29 18:38:52 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/45/a7736f1e3b11a92afa843230b1b485/.command.err: Copied (new)
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2026/05/29 18:38:52 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/48/0bacceb9cb23b5ae459045167be599/.command.out: Copied (new)
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2026/05/29 18:38:52 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/d2/af6f7db740fae3d037c21225f3e2d4/.command.out: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/df/8686fed448467a64d9c553deb36bfb/.command.out: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/dc/05c15deb415eaa02f612fcef127641/.exitcode: Copied (new)
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2026/05/29 18:38:52 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/44/70ad375c5420bd2e00d1c8d2e4d94a/.command.sh: Copied (new)
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2026/05/29 18:38:52 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/45/60004cc1caa68c46f0431789b125a7/.command.sh: Copied (new)
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2026/05/29 18:38:52 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/49/2ec22684738112bedc7a861aac27cb/.command.err: Copied (new)
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2026/05/29 18:38:52 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/e0/f30f132122b41cee4089e2f8a30bc9/.command.err: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/d9/617a0d612853f643d5c8f40f43f112/.command.sh: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/dd/7cc7e78a08417e6c08ec4c2ca284f8/.command.sh: Copied (new)
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2026/05/29 18:38:52 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/47/6b9fad8577d89573527c1842c96c00/.command.sh: Copied (new)
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2026/05/29 18:38:52 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/da/a0977c692179fcbfa136f5693235b2/.command.err: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/f0/6040902868ddd7d3ccb7059d1358f4/.command.out: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/d0/618ac89b5594c830d74748b73521c9/.command.run: Copied (new)
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2026/05/29 18:38:52 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/48/0bacceb9cb23b5ae459045167be599/.command.run: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/d0/04087633f819a39c53ddf3f0c82bfc/.exitcode: Copied (new)
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2026/05/29 18:38:52 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/dd/9c55fa42729222064de3e81631d411/.command.out: Copied (new)
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2026/05/29 18:38:52 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/e4/97c7799424623b6438482015f94503/.command.out: Copied (new)
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2026/05/29 18:38:52 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/cd/d2420f04618fab113a0611e9788c65/.exitcode: Copied (new)
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2026/05/29 18:38:52 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/e0/ec8779b90fbc55a75be6e300383c25/.command.env: Copied (new)
2026/05/29 18:38:52 INFO  : Logs_Intermediates/nextflow_work_logs/6c/a2079f1d4f61021f20c0be8accb1fb/.command.err: Copied (new)
2026/05/29 18:38:52 INFO  : Logs_Intermediates/FastqGeneration/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna_S4_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/d2/af6f7db740fae3d037c21225f3e2d4/.command.run: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/dc/05c15deb415eaa02f612fcef127641/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.snperror-sampler.log: Copied (new)
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2026/05/29 18:38:52 INFO  : ica_logs/work/3b/e421b5796c5723c84d5ee1a124d2fb/work/e0/289ee5bded416226ceff4dc6f07c56/.command.sh: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/45/a7736f1e3b11a92afa843230b1b485/.command.log: Copied (new)
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2026/05/29 18:38:52 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/da/a0977c692179fcbfa136f5693235b2/.command.log: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/dd/7cc7e78a08417e6c08ec4c2ca284f8/.command.trace: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/81/b8f61c0cb8808ef0f4acd456b3cf0a/work/e5/1ff8769280a703f03ca3a621ee5427/.command.err: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/d9/617a0d612853f643d5c8f40f43f112/.command.trace: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/49/2ec22684738112bedc7a861aac27cb/.command.log: Copied (new)
2026/05/29 18:38:52 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/e0/f30f132122b41cee4089e2f8a30bc9/.command.log: Copied (new)
2026/05/29 18:38:53 INFO  : Logs_Intermediates/nextflow_work_logs/69/34aa9f584066ab86f892d138f65066/.command.run: Copied (new)
2026/05/29 18:38:53 INFO  : ica_logs/work/a7/49d8ba9f442873e197760b5c7348c7/work/dd/9c55fa42729222064de3e81631d411/.command.run: Copied (new)
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2026/05/29 18:38:53 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/48/404679d68dd818f7c94be110c8ab52/.command.err: Copied (new)
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2026/05/29 18:38:53 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/48/404679d68dd818f7c94be110c8ab52/.command.log: Copied (new)
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2026/05/29 18:38:53 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/45/a7736f1e3b11a92afa843230b1b485/.command.run: Copied (new)
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2026/05/29 18:38:53 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/48/404679d68dd818f7c94be110c8ab52/.command.out: Copied (new)
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2026/05/29 18:38:53 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/4a/6f12dfc5c976a977fa032bee94931a/.command.err: Copied (new)
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2026/05/29 18:38:53 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/48/404679d68dd818f7c94be110c8ab52/.command.run: Copied (new)
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2026/05/29 18:38:54 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/4a/e5739c0540799739228dd127d8ce22/.command.err: Copied (new)
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2026/05/29 18:38:55 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/4a/f744bb3b3cceb109aad5671f96924f/.command.log: Copied (new)
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2026/05/29 18:38:55 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/52/aa95fb70a281f8031753f9ca90fdc8/.command.err: Copied (new)
2026/05/29 18:38:55 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/52/c527308aecfe73b62cca0b9669ea61/.command.err: Copied (new)
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2026/05/29 18:38:55 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/54/bd74dfbe7891a5bf5355602cc762b5/.command.err: Copied (new)
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2026/05/29 18:38:55 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/4a/f744bb3b3cceb109aad5671f96924f/.command.out: Copied (new)
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2026/05/29 18:38:55 INFO  : ica_logs/work/6e/f0048ebbfe02e22c428fb40ca36cd8/work/e9/ee8b947ab16eb11f418b37333bf80c/.command.sh: Copied (new)
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2026/05/29 18:38:55 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/53/0ca3677edadc700b8b1fef6065783b/.command.out: Copied (new)
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2026/05/29 18:38:55 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/53/17cce53856fab8eee3cae12feca9ff/.command.log: Copied (new)
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2026/05/29 18:38:55 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/54/bd74dfbe7891a5bf5355602cc762b5/.command.log: Copied (new)
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2026/05/29 18:38:59 INFO  : Logs_Intermediates/nextflow_work_logs/92/a7f2ecbf77ab8d17bbe59c27f75a9b/.command.env: Copied (new)
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2026/05/29 18:38:59 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/74/2a75429d18e16536f1e698fe392afd/.command.err: Copied (new)
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2026/05/29 18:38:59 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/71/2b0d38e3a678d4c67ff74bc6336d6d/.command.log: Copied (new)
2026/05/29 18:38:59 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/6e/3b4779f4705f1aa5817d18ec49a1e6/.command.run: Copied (new)
2026/05/29 18:38:59 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/73/7b5bfa5edb33d7768b33b672bd1a97/.command.err: Copied (new)
2026/05/29 18:38:59 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/70/7097d004a25c42a6293a02c2fe5c3c/.command.out: Copied (new)
2026/05/29 18:38:59 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/6e/9667dab6def0843fe89ccb8dcfe938/.command.out: Copied (new)
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2026/05/29 18:38:59 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/72/2860807fdad8506a4ed2d6439d56a5/.command.log: Copied (new)
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2026/05/29 18:38:59 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/6f/11ddc03ec812d25199341dbd8c5eab/.command.run: Copied (new)
2026/05/29 18:38:59 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/71/acf4da4252ecc4c7816ea5d4581210/.command.log: Copied (new)
2026/05/29 18:38:59 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/76/7737b3e543d8337c2f4f8db170f81e/.command.err: Copied (new)
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2026/05/29 18:38:59 INFO  : Logs_Intermediates/nextflow_work_logs/8a/2a2f27b465c3f2e59940d7a3f20b15/.command.run: Copied (new)
2026/05/29 18:38:59 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/6e/1f8f744019a155a7b49c1543225ecc/.command.sh: Copied (new)
2026/05/29 18:38:59 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/6e/3b4779f4705f1aa5817d18ec49a1e6/.command.sh: Copied (new)
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2026/05/29 18:38:59 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/6e/8f88745191870210b1e5cad011ba59/.command.run: Copied (new)
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2026/05/29 18:38:59 INFO  : Logs_Intermediates/nextflow_work_logs/90/fe614fdc477baf5d695993735b3443/.command.log: Copied (new)
2026/05/29 18:38:59 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/73/6b3a6acfcd8382a31b93d99ff1a793/.command.log: Copied (new)
2026/05/29 18:38:59 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/74/58184705b5c99d20d512cc959c25d5/.command.err: Copied (new)
2026/05/29 18:38:59 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/6f/4ac281ffbd045fbb4e24c3dd8fbb7c/.command.run: Copied (new)
2026/05/29 18:38:59 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/71/2b0d38e3a678d4c67ff74bc6336d6d/.command.out: Copied (new)
2026/05/29 18:38:59 INFO  : Logs_Intermediates/nextflow_work_logs/89/cfc5f6781cc48849a6a78a13e48aaf/.command.sh: Copied (new)
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2026/05/29 18:38:59 INFO  : 
Transferred:   	  329.487 GiB / 383.137 GiB, 86%, 932.921 MiB/s, ETA 58s
Transferred:        12316 / 14458, 85%
Elapsed time:       4m0.0s
Transferring:
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 83% /5.954Gi, 23.557Mi/s, 42s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 94% /4.890Gi, 29.028Mi/s, 9s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 46% /8.846Gi, 21.317Mi/s, 3m45s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 97% /4.210Gi, 24.761Mi/s, 4s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 97% /4.068Gi, 31.650Mi/s, 3s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 79% /4.417Gi, 19.587Mi/s, 46s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 98% /3.864Gi, 36.541Mi/s, 1s
 * Logs_Intermediates/Fas…5_L001_R1_001.fastq.gz: 71% /4.295Gi, 22.659Mi/s, 55s
 * Logs_Intermediates/Fas…5_L001_R2_001.fastq.gz: 82% /4.458Gi, 31.919Mi/s, 24s
 * Logs_Intermediates/Fas…5_L002_R1_001.fastq.gz: 84% /4.151Gi, 29.492Mi/s, 22s
 * Logs_Intermediates/Fas…5_L002_R2_001.fastq.gz: 79% /4.316Gi, 29.239Mi/s, 30s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 26% /11.062Gi, 30.889Mi/s, 4m29s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 65% /4.656Gi, 30.665Mi/s, 53s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 60% /4.686Gi, 33.204Mi/s, 57s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 64% /4.249Gi, 32.008Mi/s, 47s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 60% /4.057Gi, 29.543Mi/s, 55s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 49% /3.690Gi, 30.585Mi/s, 1m1s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 45% /4.691Gi, 32.353Mi/s, 1m21s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 60% /3.064Gi, 35.854Mi/s, 34s
 * Logs_Intermediates/Fas…0_L001_R1_001.fastq.gz: 17% /6.862Gi, 25.630Mi/s, 3m46s
 * Logs_Intermediates/Fas…0_L001_R2_001.fastq.gz: 19% /7.043Gi, 33.561Mi/s, 2m52s
 * Logs_Intermediates/Fas…0_L002_R1_001.fastq.gz: 20% /6.909Gi, 29.323Mi/s, 3m11s
 * Logs_Intermediates/Fas…0_L002_R2_001.fastq.gz: 19% /7.096Gi, 30.416Mi/s, 3m11s
 * ica_logs/work/c6/f7cdd…23b50a9c7/.command.out: 77% /68.072Mi, 1.678Mi/s, 8s
 * ica_logs/work/c6/f7cdd…346fd6d4c/.command.log: 70% /89.301Mi, 2.403Mi/s, 10s
 * ica_logs/work/c6/f7cdd…346fd6d4c/.command.out: 90% /89.301Mi, 2.966Mi/s, 2s
 * ica_logs/work/c6/f7cdd…Log-20260529033046.log: 66% /64.847Mi, 1.762Mi/s, 12s
 * ica_logs/work/c6/f7cdd…9f74ddc3c/.command.log: 65% /82.740Mi, 3.533Mi/s, 8s
 * ica_logs/work/c6/f7cdd…a3ec23a2a/.command.out: 46% /87.708Mi, 3.250Mi/s, 14s
 * ica_logs/work/c6/f7cdd…Log-20260529032739.log: 77% /87.583Mi, 6.500Mi/s, 3s
 * ica_logs/work/c6/f7cdd…Log-20260529033141.log: 87% /69.612Mi, 6.666Mi/s, 1s
 * ica_logs/out/Logs_Inte…b8dcfe938/.command.run:100% /13.050Ki, 0/s, -
 * Logs_Intermediates/nex…044865222/.command.out:  0% /0, 0/s, -
 * ica_logs/out/Logs_Inte…8fe392afd/.command.log:100% /1.712Ki, 0/s, -
 * ica_logs/out/Logs_Inte…1c1f06e999/.command.sh:100% /1.287Ki, 0/s, -
 * ica_logs/out/Logs_Inte…af4983f08/.command.env: transferring
 * Logs_Intermediates/nex…a5dae5946/.command.out:  0% /0, 0/s, -
 * ica_logs/out/Logs_Inte…672bd1a97/.command.log:100% /1.707Ki, 0/s, -
 * Logs_Intermediates/nex…481a60a61/.command.run: transferring
 * Logs_Intermediates/nex…71db7294b/.command.out:  0% /0, 0/s, -
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2026/05/29 18:39:08 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/fe/894bf83d970dc16058f68116ab907c/.command.out: Copied (new)
2026/05/29 18:39:08 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/f8/e0f9ff46881408533a63f5df654d1e/.command.run: Copied (new)
2026/05/29 18:39:08 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/fb/ac86e064b8e9ac559d30cb3a14635a/.command.run: Copied (new)
2026/05/29 18:39:08 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/fb/7e62ecca02622f25021191a178fefb/.command.run: Copied (new)
2026/05/29 18:39:08 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/f8/727461566d32435caddecc3e3f3009/.command.sh: Copied (new)
2026/05/29 18:39:08 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/fa/5de5e15ba4d1e1cba84f742aafbee5/.command.sh: Copied (new)
2026/05/29 18:39:08 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/f8/e0f9ff46881408533a63f5df654d1e/.command.sh: Copied (new)
2026/05/29 18:39:08 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/f9/c3f3081fdf214dce0afd6af914a1f7/.command.sh: Copied (new)
2026/05/29 18:39:08 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/f8/b32c88e2a04734a5ba470e5c1d203a/.command.sh: Copied (new)
2026/05/29 18:39:08 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/fb/7e62ecca02622f25021191a178fefb/.command.sh: Copied (new)
2026/05/29 18:39:08 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/f9/4a89e8e76fcb549f6a4f4532c2f88a/.command.sh: Copied (new)
2026/05/29 18:39:08 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/fb/ac86e064b8e9ac559d30cb3a14635a/.command.sh: Copied (new)
2026/05/29 18:39:08 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/fd/3237de35cbb3be5602506487f08db4/.command.run: Copied (new)
2026/05/29 18:39:08 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/fd/d917bb2064e450abd0adf3e9ec6e11/.command.run: Copied (new)
2026/05/29 18:39:08 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/fb/9f6a56239739a405e290b67f65aff0/.command.sh: Copied (new)
2026/05/29 18:39:08 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/fc/d4bce6d52167707c63c23d81ff36c4/.command.sh: Copied (new)
2026/05/29 18:39:08 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/fd/d917bb2064e450abd0adf3e9ec6e11/.command.sh: Copied (new)
2026/05/29 18:39:08 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/fe/894bf83d970dc16058f68116ab907c/.command.sh: Copied (new)
2026/05/29 18:39:08 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/fd/3237de35cbb3be5602506487f08db4/.command.sh: Copied (new)
2026/05/29 18:39:08 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/fc/d4bce6d52167707c63c23d81ff36c4/.command.run: Copied (new)
2026/05/29 18:39:08 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/fe/894bf83d970dc16058f68116ab907c/.command.run: Copied (new)
2026/05/29 18:39:12 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/88/1e2c1f6d89ca0c46e47bf54d7c320d/SampleAnalysisResults/1029_P7H-T1-TDNA-1_HLNMCDRX7_1_SARJeantLog-20260529033046.log: Copied (new)
2026/05/29 18:39:15 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/8e/9398f897aa1715e6883a4346fd6d4c/.command.log: Copied (new)
2026/05/29 18:39:16 INFO  : ica_logs/work/c6/f7cdd77340d346661bf4215d4e67e0/work/dc/62b5aa34e9bc2c63daa5ea3ec23a2a/.command.out: Copied (new)
2026/05/29 18:39:23 INFO  : Logs_Intermediates/FastqGeneration/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna_S25_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:39:27 INFO  : Logs_Intermediates/FastqGeneration/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna_S25_L002_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:39:29 INFO  : 
Transferred:   	  345.256 GiB / 383.137 GiB, 90%, 574.147 MiB/s, ETA 1m7s
Transferred:        14441 / 14458, 100%
Elapsed time:      4m30.0s
Transferring:
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 95% /5.954Gi, 22.600Mi/s, 12s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 58% /8.846Gi, 38.882Mi/s, 1m35s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 95% /4.417Gi, 24.041Mi/s, 8s
 * Logs_Intermediates/Fas…5_L001_R1_001.fastq.gz: 87% /4.295Gi, 21.238Mi/s, 26s
 * Logs_Intermediates/Fas…5_L001_R2_001.fastq.gz: 98% /4.458Gi, 22.385Mi/s, 3s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 33% /11.062Gi, 24.379Mi/s, 5m11s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 83% /4.656Gi, 28.978Mi/s, 27s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 79% /4.686Gi, 33.417Mi/s, 29s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 80% /4.249Gi, 19.476Mi/s, 42s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 78% /4.057Gi, 24.940Mi/s, 35s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 78% /3.690Gi, 33.089Mi/s, 24s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 59% /4.691Gi, 21.508Mi/s, 1m30s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 87% /3.064Gi, 32.708Mi/s, 11s
 * Logs_Intermediates/Fas…0_L001_R1_001.fastq.gz: 26% /6.862Gi, 19.790Mi/s, 4m21s
 * Logs_Intermediates/Fas…0_L001_R2_001.fastq.gz: 30% /7.043Gi, 24.400Mi/s, 3m25s
 * Logs_Intermediates/Fas…0_L002_R1_001.fastq.gz: 33% /6.909Gi, 27.064Mi/s, 2m53s
 * Logs_Intermediates/Fas…0_L002_R2_001.fastq.gz: 33% /7.096Gi, 32.169Mi/s, 2m30s

2026/05/29 18:39:33 INFO  : Logs_Intermediates/FastqGeneration/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna_S25_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:39:38 INFO  : Logs_Intermediates/DnaDragenCaller/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna/1241_RY0-T1-TDNA-1_HLNMCDRX7_1_dna.bam: Multi-thread Copied (new)
2026/05/29 18:39:40 INFO  : Logs_Intermediates/DnaDragenCaller/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_E2-T1-TDNA-1_HLNMCDRX7_1_dna.bam: Multi-thread Copied (new)
2026/05/29 18:39:40 INFO  : Logs_Intermediates/DnaDragenCaller/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna/659_hv-T1-TDNA-1_HLNMCDRX7_1_dna.bam: Multi-thread Copied (new)
2026/05/29 18:39:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna/659_Em-T1-TDNA-1_HLNMCDRX7_1_dna.bam: Multi-thread Copied (new)
2026/05/29 18:39:51 INFO  : Logs_Intermediates/DnaDragenCaller/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna/1267_ES-T1-TDNA-1_HLNMCDRX7_1_dna.bam: Multi-thread Copied (new)
2026/05/29 18:39:52 INFO  : Logs_Intermediates/DnaDragenCaller/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna/1267_Q-T1-TDNA-1_HLNMCDRX7_1_dna.bam: Multi-thread Copied (new)
2026/05/29 18:39:56 INFO  : Logs_Intermediates/DnaDragenCaller/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna/659_eNS-T1-TDNA-1_HLNMCDRX7_1_dna.bam: Multi-thread Copied (new)
2026/05/29 18:39:56 INFO  : Logs_Intermediates/DnaDragenCaller/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna/1267_FC-T1-TDNA-1_HLNMCDRX7_1_dna.bam: Multi-thread Copied (new)
2026/05/29 18:39:56 INFO  : Logs_Intermediates/FastqGeneration/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna_S25_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:39:59 INFO  : 
Transferred:   	  359.886 GiB / 383.137 GiB, 94%, 507.918 MiB/s, ETA 46s
Transferred:        14451 / 14458, 100%
Elapsed time:       5m0.0s
Transferring:
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 74% /8.846Gi, 49.702Mi/s, 46s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 44% /11.062Gi, 45.021Mi/s, 2m20s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 84% /4.691Gi, 40.974Mi/s, 18s
 * Logs_Intermediates/Fas…0_L001_R1_001.fastq.gz: 46% /6.862Gi, 46.640Mi/s, 1m20s
 * Logs_Intermediates/Fas…0_L001_R2_001.fastq.gz: 49% /7.043Gi, 47.049Mi/s, 1m17s
 * Logs_Intermediates/Fas…0_L002_R1_001.fastq.gz: 52% /6.909Gi, 45.862Mi/s, 1m14s
 * Logs_Intermediates/Fas…0_L002_R2_001.fastq.gz: 49% /7.096Gi, 43.968Mi/s, 1m23s

2026/05/29 18:40:12 INFO  : Logs_Intermediates/DnaDragenCaller/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna/659_eRe-T1-TDNA-1_HLNMCDRX7_1_dna.bam: Multi-thread Copied (new)
2026/05/29 18:40:29 INFO  : 
Transferred:   	  370.264 GiB / 383.137 GiB, 97%, 369.881 MiB/s, ETA 35s
Transferred:        14452 / 14458, 100%
Elapsed time:      5m30.0s
Transferring:
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 93% /8.846Gi, 56.762Mi/s, 10s
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 58% /11.062Gi, 53.390Mi/s, 1m28s
 * Logs_Intermediates/Fas…0_L001_R1_001.fastq.gz: 71% /6.862Gi, 58.908Mi/s, 33s
 * Logs_Intermediates/Fas…0_L001_R2_001.fastq.gz: 73% /7.043Gi, 56.585Mi/s, 33s
 * Logs_Intermediates/Fas…0_L002_R1_001.fastq.gz: 74% /6.909Gi, 53.953Mi/s, 33s
 * Logs_Intermediates/Fas…0_L002_R2_001.fastq.gz: 70% /7.096Gi, 48.443Mi/s, 44s

2026/05/29 18:40:40 INFO  : Logs_Intermediates/DnaDragenCaller/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna/1267_2-T1-TDNA-1_HLNMCDRX7_1_dna.bam: Multi-thread Copied (new)
2026/05/29 18:40:59 INFO  : 
Transferred:   	  379.043 GiB / 383.137 GiB, 99%, 297.333 MiB/s, ETA 14s
Transferred:        14453 / 14458, 100%
Elapsed time:       6m0.0s
Transferring:
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 71% /11.062Gi, 50.396Mi/s, 1m3s
 * Logs_Intermediates/Fas…0_L001_R1_001.fastq.gz: 97% /6.862Gi, 57.464Mi/s, 3s
 * Logs_Intermediates/Fas…0_L001_R2_001.fastq.gz: 98% /7.043Gi, 61.193Mi/s, 1s
 * Logs_Intermediates/Fas…0_L002_R1_001.fastq.gz: 99% /6.909Gi, 57.519Mi/s, 0s
 * Logs_Intermediates/Fas…0_L002_R2_001.fastq.gz: 91% /7.096Gi, 53.200Mi/s, 12s

2026/05/29 18:41:01 INFO  : Logs_Intermediates/FastqGeneration/Undetermined/Undetermined_S0_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:41:01 INFO  : Logs_Intermediates/FastqGeneration/Undetermined/Undetermined_S0_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:41:03 INFO  : Logs_Intermediates/FastqGeneration/Undetermined/Undetermined_S0_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:41:12 INFO  : Logs_Intermediates/FastqGeneration/Undetermined/Undetermined_S0_L002_R2_001.fastq.gz: Multi-thread Copied (new)
2026/05/29 18:41:29 INFO  : 
Transferred:   	  381.169 GiB / 383.137 GiB, 99%, 92.848 MiB/s, ETA 21s
Transferred:        14457 / 14458, 100%
Elapsed time:      6m30.0s
Transferring:
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 82% /11.062Gi, 40.689Mi/s, 49s

2026/05/29 18:41:59 INFO  : 
Transferred:   	  382.701 GiB / 383.137 GiB, 100%, 58.263 MiB/s, ETA 7s
Transferred:        14457 / 14458, 100%
Elapsed time:       7m0.0s
Transferring:
 * Logs_Intermediates/Dna…-1_HLNMCDRX7_1_dna.bam: 96% /11.062Gi, 50.636Mi/s, 8s

2026/05/29 18:42:08 INFO  : Logs_Intermediates/DnaDragenCaller/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna/1267_EO-T1-TDNA-1_HLNMCDRX7_1_dna.bam: Multi-thread Copied (new)
2026/05/29 18:42:08 INFO  : 
Transferred:   	  383.137 GiB / 383.137 GiB, 100%, 55.823 MiB/s, ETA 0s
Transferred:        14458 / 14458, 100%
Elapsed time:       7m9.3s