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2026/06/04 17:49:58 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.combined.counts.txt.gz: Copied (new)
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2026/06/04 17:49:58 INFO  : Logs_Intermediates/DnaDragenCaller/1173_M5U-T1-TDNA-01_HLNLMDRX7_1_dna/1173_M5U-T1-TDNA-01_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
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2026/06/04 17:50:02 INFO  : Results/659_qZ-T1-TDNA-1_HLNLMDRX7_1/659_qZ-T1-TDNA-1_HLNLMDRX7_1_MetricsOutput.tsv: Copied (new)
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2026/06/04 17:50:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:50:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:50:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:50:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:50:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:50:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:50:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/06/04 17:50:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/06/04 17:50:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:50:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/06/04 17:50:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/06/04 17:50:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/06/04 17:50:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/06/04 17:50:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:50:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:50:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/06/04 17:50:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/06/04 17:50:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/06/04 17:50:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/06/04 17:50:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/06/04 17:50:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/06/04 17:50:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/06/04 17:50:10 INFO  : Results/659_cqB-T1-TDNA-1_HLNLMDRX7_1/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf: Copied (new)
2026/06/04 17:50:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/06/04 17:50:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:50:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:50:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/06/04 17:50:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:50:11 INFO  : Results/659_UI-T1-TDNA-1_HLNLMDRX7_1/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf: Copied (new)
2026/06/04 17:50:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/06/04 17:50:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/06/04 17:50:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/06/04 17:50:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/06/04 17:50:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/06/04 17:50:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/06/04 17:50:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/06/04 17:50:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/06/04 17:50:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions.txt: Copied (new)
2026/06/04 17:50:11 INFO  : Logs_Intermediates/Tmb/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:50:11 INFO  : Logs_Intermediates/Tmb/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:50:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:50:11 INFO  : Logs_Intermediates/Tmb/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:50:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780520288180_112627.log: Copied (new)
2026/06/04 17:50:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780520288198_112627.log: Copied (new)
2026/06/04 17:50:11 INFO  : Logs_Intermediates/Tmb/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:50:11 INFO  : Results/659_eMB-T1-TDNA-1_HLNLMDRX7_1/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf: Copied (new)
2026/06/04 17:50:11 INFO  : Logs_Intermediates/Tmb/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:50:11 INFO  : Logs_Intermediates/Tmb/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna.tmb.metrics.csv: Copied (new)
2026/06/04 17:50:11 INFO  : Results/659_cZs-T1-TDNA-1_HLNLMDRX7_1/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf: Copied (new)
2026/06/04 17:50:11 INFO  : Logs_Intermediates/Tmb/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna.tmb.trace.tsv: Copied (new)
2026/06/04 17:50:11 INFO  : Logs_Intermediates/Tmb/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780525978075_311066.log: Copied (new)
2026/06/04 17:50:11 INFO  : Logs_Intermediates/Tmb/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603205722.log: Copied (new)
2026/06/04 17:50:11 INFO  : Logs_Intermediates/Tmb/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:50:11 INFO  : ica_logs/work/c9/94efd58f5ecfdba9e3a9e2be8fa9ac/.command.begin: Copied (new)
2026/06/04 17:50:11 INFO  : ica_logs/work/c9/94efd58f5ecfdba9e3a9e2be8fa9ac/.command.err: Copied (new)
2026/06/04 17:50:11 INFO  : Logs_Intermediates/Tmb/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780525978067_311066.log: Copied (new)
2026/06/04 17:50:11 INFO  : ica_logs/work/c9/94efd58f5ecfdba9e3a9e2be8fa9ac/.command.k8s.yml: Copied (new)
2026/06/04 17:50:11 INFO  : ica_logs/work/c9/94efd58f5ecfdba9e3a9e2be8fa9ac/.command.run: Copied (new)
2026/06/04 17:50:11 INFO  : ica_logs/work/c9/94efd58f5ecfdba9e3a9e2be8fa9ac/.exitcode: Copied (new)
2026/06/04 17:50:11 INFO  : ica_logs/work/c9/94efd58f5ecfdba9e3a9e2be8fa9ac/.command.sh: Copied (new)
2026/06/04 17:50:11 INFO  : ica_logs/work/c9/94efd58f5ecfdba9e3a9e2be8fa9ac/.command.trace: Copied (new)
2026/06/04 17:50:11 INFO  : ica_logs/work/c9/94efd58f5ecfdba9e3a9e2be8fa9ac/.command.out: Copied (new)
2026/06/04 17:50:11 INFO  : ica_logs/work/c9/94efd58f5ecfdba9e3a9e2be8fa9ac/.command.tes.yml: Copied (new)
2026/06/04 17:50:11 INFO  : Results/659_ev0-T1-TDNA-1_HLNLMDRX7_1/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf: Copied (new)
2026/06/04 17:50:11 INFO  : Results/659_ev0-T1-TDNA-1_HLNLMDRX7_1/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna.gene_cov_report.tsv: Copied (new)
2026/06/04 17:50:12 INFO  : Results/659_ev0-T1-TDNA-1_HLNLMDRX7_1/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_output.json: Copied (new)
2026/06/04 17:50:12 INFO  : Results/659_ev0-T1-TDNA-1_HLNLMDRX7_1/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna.exon_cov_report.tsv: Copied (new)
2026/06/04 17:50:12 INFO  : Results/659_ev0-T1-TDNA-1_HLNLMDRX7_1/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna.gis.json: Copied (new)
2026/06/04 17:50:12 INFO  : Results/659_ev0-T1-TDNA-1_HLNLMDRX7_1/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna_DNAExonCNV_Annotated.json.gz: Copied (new)
2026/06/04 17:50:12 INFO  : Results/659_7V-T1-TDNA-1_HLNLMDRX7_1/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf: Copied (new)
2026/06/04 17:50:12 INFO  : Results/659_ev0-T1-TDNA-1_HLNLMDRX7_1/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
2026/06/04 17:50:12 INFO  : Results/659_ev0-T1-TDNA-1_HLNLMDRX7_1/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf: Copied (new)
2026/06/04 17:50:12 INFO  : Logs_Intermediates/LrCalculator/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
2026/06/04 17:50:12 INFO  : Logs_Intermediates/LrCalculator/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna/LrCalculator-20260603223441.log: Copied (new)
2026/06/04 17:50:12 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:50:12 INFO  : Results/659_ev0-T1-TDNA-1_HLNLMDRX7_1/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna_TMB_Trace.tsv: Copied (new)
2026/06/04 17:50:12 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:50:12 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:50:12 INFO  : Results/659_dyd-T1-TDNA-1_HLNLMDRX7_1/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf: Copied (new)
2026/06/04 17:50:12 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:50:12 INFO  : Results/659_egs-T1-TDNA-1_HLNLMDRX7_1/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf: Copied (new)
2026/06/04 17:50:12 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:50:12 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:50:12 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:50:12 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:50:12 INFO  : Results/659_dZX-T1-TDNA-1_HLNLMDRX7_1/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf: Copied (new)
2026/06/04 17:50:12 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
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2026/06/04 17:50:18 INFO  : Logs_Intermediates/LrAnnotation/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna_DNAExonCNV_Annotated.json.gz.jsi: Copied (new)
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2026/06/04 17:50:18 INFO  : Logs_Intermediates/LrAnnotation/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603225000.log: Copied (new)
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2026/06/04 17:50:18 INFO  : ica_logs/bpe1-38386f8c-9796-4ea7-9fb5-4ea61fca1c4c-1pre/16/stderr.grtnk.log: Copied (new)
2026/06/04 17:50:18 INFO  : Results/659_dH2-T1-TDNA-1_HLNLMDRX7_1/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf: Copied (new)
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2026/06/04 17:50:18 INFO  : Logs_Intermediates/Gis/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
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2026/06/04 17:50:19 INFO  : Logs_Intermediates/Gis/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna_logRatio.tsv: Copied (new)
2026/06/04 17:50:19 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
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2026/06/04 17:50:19 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.exon_fine_hist.csv: Copied (new)
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2026/06/04 17:50:19 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/06/04 17:50:19 INFO  : Results/659_cYC-T1-TDNA-1_HLNLMDRX7_1/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf: Copied (new)
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2026/06/04 17:50:19 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.mapping_metrics.csv: Copied (new)
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2026/06/04 17:50:20 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/06/04 17:50:20 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:50:20 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/06/04 17:50:20 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:50:20 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/06/04 17:50:20 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/06/04 17:50:20 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/06/04 17:50:20 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:50:20 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/06/04 17:50:20 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/06/04 17:50:20 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
2026/06/04 17:50:20 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/06/04 17:50:20 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/06/04 17:50:20 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:50:20 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/06/04 17:50:20 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/06/04 17:50:20 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/06/04 17:50:20 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:50:20 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:50:20 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/06/04 17:50:20 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/06/04 17:50:20 INFO  : Results/659_ez6-T1-TDNA-1_HLNLMDRX7_1/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf: Copied (new)
2026/06/04 17:50:20 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/06/04 17:50:20 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/06/04 17:50:20 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/06/04 17:50:20 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/Tmb/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/Tmb/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780521053168_131791.log: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/Tmb/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780521053184_131791.log: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/Tmb/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/Tmb/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/Tmb/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.tmb.metrics.csv: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/Tmb/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/Tmb/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603212008.log: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/Tmb/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.tmb.trace.tsv: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/Tmb/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780526943661_340355.log: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/Tmb/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780526943668_340355.log: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/DnaCoverageReports/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.gene_cov_report.tsv: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/DnaCoverageReports/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/DnaCoverageReports/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.exon_cov_report.tsv: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780525179513_278956.log: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/nextflow_work_logs/04/e760071eaf8c312c34e10a2b387af8/.command.run: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/nextflow_work_logs/04/e760071eaf8c312c34e10a2b387af8/.command.log: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/nextflow_work_logs/04/e760071eaf8c312c34e10a2b387af8/.command.out: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/nextflow_work_logs/04/e760071eaf8c312c34e10a2b387af8/.command.err: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/LrCalculator/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/nextflow_work_logs/04/e760071eaf8c312c34e10a2b387af8/.command.sh: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780525179505_278956.log: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/LrCalculator/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/LrCalculator-20260603225001.log: Copied (new)
2026/06/04 17:50:21 INFO  : Logs_Intermediates/Annotation/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:50:22 INFO  : Logs_Intermediates/Contamination/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna_contamination.json: Copied (new)
2026/06/04 17:50:22 INFO  : Logs_Intermediates/Annotation/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603224905.log: Copied (new)
2026/06/04 17:50:22 INFO  : Results/659_qZ-T1-TDNA-1_HLNLMDRX7_1/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf: Copied (new)
2026/06/04 17:50:22 INFO  : 
Transferred:   	   33.813 GiB / 409.748 GiB, 8%, 1.164 GiB/s, ETA 5m23s
Transferred:         1671 / 11766, 14%
Elapsed time:        30.0s
Transferring:
 * Logs_Intermediates/Sam…Log-20260603230849.log: 81% /70.099Mi, 1.899Mi/s, 6s
 * Logs_Intermediates/Sam…Log-20260603230850.log: 89% /88.447Mi, 2.477Mi/s, 3s
 * Logs_Intermediates/Sam…Log-20260603230640.log: 88% /71.393Mi, 2.022Mi/s, 4s
 * Logs_Intermediates/Fas…5_L001_R1_001.fastq.gz: 69% /1.564Gi, 37.763Mi/s, 12s
 * Logs_Intermediates/Fas…5_L001_R2_001.fastq.gz: 58% /1.609Gi, 33.665Mi/s, 20s
 * Logs_Intermediates/Fas…5_L002_R1_001.fastq.gz: 47% /1.572Gi, 28.307Mi/s, 29s
 * Logs_Intermediates/Fas…5_L002_R2_001.fastq.gz: 67% /1.617Gi, 38.659Mi/s, 13s
 * ica_logs/out/TSO500_Ne…_node_001-nextflow.log: 97% /50.106Mi, 1.839Mi/s, 0s
 * Logs_Intermediates/Fas…2_L001_R1_001.fastq.gz: 56% /1.980Gi, 41.228Mi/s, 21s
 * Logs_Intermediates/Fas…2_L001_R2_001.fastq.gz: 44% /2.055Gi, 32.093Mi/s, 36s
 * Logs_Intermediates/Fas…2_L002_R1_001.fastq.gz: 39% /1.988Gi, 26.809Mi/s, 46s
 * Logs_Intermediates/Fas…2_L002_R2_001.fastq.gz: 39% /2.068Gi, 29.870Mi/s, 43s
 * Logs_Intermediates/Fas…2_L001_R1_001.fastq.gz: 58% /1.522Gi, 31.903Mi/s, 20s
 * Logs_Intermediates/Fas…2_L001_R2_001.fastq.gz: 43% /1.563Gi, 27.351Mi/s, 32s
 * Logs_Intermediates/Fas…2_L002_R1_001.fastq.gz: 58% /1.542Gi, 35.442Mi/s, 18s
 * Logs_Intermediates/Fas…2_L002_R2_001.fastq.gz: 43% /1.586Gi, 25.664Mi/s, 35s
 * Logs_Intermediates/Fas…4_L001_R1_001.fastq.gz: 47% /2.092Gi, 40.012Mi/s, 27s
 * Logs_Intermediates/Fas…4_L001_R2_001.fastq.gz: 44% /2.155Gi, 37.224Mi/s, 32s
 * Logs_Intermediates/Fas…4_L002_R1_001.fastq.gz: 55% /2.099Gi, 46.486Mi/s, 20s
 * Logs_Intermediates/Fas…4_L002_R2_001.fastq.gz: 31% /2.166Gi, 27.728Mi/s, 54s
 * Logs_Intermediates/Fas…2_L001_R1_001.fastq.gz: 47% /1.658Gi, 29.339Mi/s, 30s
 * Logs_Intermediates/Fas…2_L001_R2_001.fastq.gz: 52% /1.710Gi, 37.883Mi/s, 21s
 * Logs_Intermediates/Fas…2_L002_R1_001.fastq.gz: 59% /1.674Gi, 41.037Mi/s, 17s
 * Logs_Intermediates/Fas…2_L002_R2_001.fastq.gz: 47% /1.728Gi, 30.458Mi/s, 30s
 * Logs_Intermediates/Dna…01_HLNLMDRX7_1_dna.bam: 21% /4.461Gi, 41.145Mi/s, 1m26s
 * Logs_Intermediates/Dna…01_HLNLMDRX7_1_dna.bam: 15% /4.128Gi, 28.254Mi/s, 2m6s
 * Results/659_ciq-T1-TDN…dna.hard-filtered.gvcf: 88% /137.143Mi, 5.568Mi/s, 2s
 * Logs_Intermediates/Fas…1_L001_R1_001.fastq.gz: 34% /1.991Gi, 31.325Mi/s, 42s
 * Logs_Intermediates/Fas…1_L001_R2_001.fastq.gz: 38% /1.946Gi, 35.908Mi/s, 34s
 * Logs_Intermediates/Fas…1_L002_R1_001.fastq.gz: 29% /1.999Gi, 26.647Mi/s, 54s
 * Logs_Intermediates/Fas…1_L002_R2_001.fastq.gz: 40% /1.947Gi, 35.794Mi/s, 33s
 * Results/659_32-T1-TDNA…dna.hard-filtered.gvcf: 65% /138.292Mi, 4.229Mi/s, 11s
 * Results/659_bea-T1-TDN…dna.hard-filtered.gvcf: 15% /139.410Mi, 1.038Mi/s, 1m54s
 * Results/659_byZ-T1-TDN…dna.hard-filtered.gvcf: 79% /140.216Mi, 5.413Mi/s, 5s
 * Results/659_dot-T1-TDN…dna.hard-filtered.gvcf: 72% /137.043Mi, 5.175Mi/s, 7s
 * Results/659_eJY-T1-TDN…dna.hard-filtered.gvcf: 36% /141.446Mi, 2.651Mi/s, 33s
 * Logs_Intermediates/Fas…4_L001_R1_001.fastq.gz: 22% /1.906Gi, 29.867Mi/s, 50s
 * Logs_Intermediates/Fas…4_L001_R2_001.fastq.gz: 26% /1.982Gi, 34.133Mi/s, 43s
 * Logs_Intermediates/Fas…4_L002_R1_001.fastq.gz: 22% /1.909Gi, 27.733Mi/s, 54s
 * Logs_Intermediates/Fas…4_L002_R2_001.fastq.gz: 29% /1.987Gi, 40.533Mi/s, 35s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam:  9% /4.929Gi, 32.000Mi/s, 2m22s
 * Results/659_ev0-T1-TDN…dna.hard-filtered.gvcf: 98% /137.162Mi, 14.222Mi/s, 0s
 * Logs_Intermediates/Fas…0_L001_R1_001.fastq.gz: 21% /1.318Gi, 36.000Mi/s, 29s
 * Logs_Intermediates/Fas…0_L001_R2_001.fastq.gz: 27% /1.239Gi, 43.203Mi/s, 21s
 * Logs_Intermediates/Fas…0_L002_R1_001.fastq.gz: 11% /1.303Gi, 19.652Mi/s, 59s
 * Logs_Intermediates/Fas…0_L002_R2_001.fastq.gz: 17% /1.219Gi, 24.496Mi/s, 41s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam:  4% /5.160Gi, 32.000Mi/s, 2m38s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam:  1% /4.711Gi, 12.800Mi/s, 6m9s
 * Logs_Intermediates/Fas…8_L001_R1_001.fastq.gz:  2% /2.307Gi, 21.333Mi/s, 1m47s
 * Logs_Intermediates/Fas…8_L001_R2_001.fastq.gz:  5% /2.340Gi, 42.667Mi/s, 53s
 * Logs_Intermediates/Fas…8_L002_R1_001.fastq.gz:  2% /2.292Gi, 21.333Mi/s, 1m46s
 * Logs_Intermediates/Fas…8_L002_R2_001.fastq.gz:  1% /2.326Gi, 10.667Mi/s, 3m39s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam:  0% /4.999Gi, 10.667Mi/s, 7m56s
 * Logs_Intermediates/Dna…_1_dna.umi-regions.txt: 49% /2.021Mi, 1019.982Ki/s, 1s
 * Logs_Intermediates/Tmb…_TMB_Annotated.json.gz: 62% /9.618Mi, 0/s, -
 * Logs_Intermediates/Dna…combined.counts.txt.gz: 59% /23.642Mi, 0/s, -
 * Logs_Intermediates/Ann…ants_Annotated.json.gz:  6% /7.722Mi, 0/s, -
 * Logs_Intermediates/Con…ler-20260603230317.log:100% /2.154Ki, 0/s, -
 * Results/659_qZ-T1-TDNA…na.exon_cov_report.tsv:100% /389.274Ki, 0/s, -
 * Results/659_qZ-T1-TDNA…na.gene_cov_report.tsv: transferring
 * Results/659_qZ-T1-TDNA…NLMDRX7_1_dna.gis.json: transferring
 * Results/659_qZ-T1-TDNA…dna.hard-filtered.gvcf: transferring
 * Results/659_qZ-T1-TDNA…_dna.hard-filtered.vcf: transferring
 * Results/659_qZ-T1-TDNA…a.microsat_output.json: transferring

2026/06/04 17:50:22 INFO  : Logs_Intermediates/Contamination/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/Spoiler-20260603230317.log: Copied (new)
2026/06/04 17:50:22 INFO  : Results/659_qZ-T1-TDNA-1_HLNLMDRX7_1/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna.gis.json: Copied (new)
2026/06/04 17:50:22 INFO  : Results/659_qZ-T1-TDNA-1_HLNLMDRX7_1/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna.exon_cov_report.tsv: Copied (new)
2026/06/04 17:50:22 INFO  : Results/659_qZ-T1-TDNA-1_HLNLMDRX7_1/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna.gene_cov_report.tsv: Copied (new)
2026/06/04 17:50:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions.txt: Copied (new)
2026/06/04 17:50:22 INFO  : Results/659_qZ-T1-TDNA-1_HLNLMDRX7_1/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
2026/06/04 17:50:22 INFO  : Results/659_qZ-T1-TDNA-1_HLNLMDRX7_1/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna_DNAExonCNV_Annotated.json.gz: Copied (new)
2026/06/04 17:50:22 INFO  : Results/659_ev0-T1-TDNA-1_HLNLMDRX7_1/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf: Copied (new)
2026/06/04 17:50:22 INFO  : Results/659_qZ-T1-TDNA-1_HLNLMDRX7_1/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_output.json: Copied (new)
2026/06/04 17:50:22 INFO  : Logs_Intermediates/LrAnnotation/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna_DNAExonCNV_Annotated.json.gz: Copied (new)
2026/06/04 17:50:22 INFO  : Results/659_qZ-T1-TDNA-1_HLNLMDRX7_1/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna_TMB_Trace.tsv: Copied (new)
2026/06/04 17:50:22 INFO  : Logs_Intermediates/LrAnnotation/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna_DNAExonCNV_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:50:22 INFO  : Logs_Intermediates/LrAnnotation/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603224247.log: Copied (new)
2026/06/04 17:50:22 INFO  : Logs_Intermediates/MetricsOutput/659_UI-T1-TDNA-1_HLNLMDRX7_1/659_UI-T1-TDNA-1_HLNLMDRX7_1_MetricsOutput.tsv: Copied (new)
2026/06/04 17:50:22 INFO  : Results/659_qZ-T1-TDNA-1_HLNLMDRX7_1/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf: Copied (new)
2026/06/04 17:50:22 INFO  : Logs_Intermediates/Tmb/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz: Copied (new)
2026/06/04 17:50:22 INFO  : Logs_Intermediates/CombinedVariantOutput/659_UI-T1-TDNA-1_HLNLMDRX7_1/659_UI-T1-TDNA-1_HLNLMDRX7_1_CombinedVariantOutput.tsv: Copied (new)
2026/06/04 17:50:22 INFO  : ica_logs/out/TSO500_Nextflow_Logs/analysis_node_001-nextflow.log: Copied (new)
2026/06/04 17:50:22 INFO  : Logs_Intermediates/Gis/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:50:22 INFO  : Logs_Intermediates/Gis/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.abcn_genes.tsv: Copied (new)
2026/06/04 17:50:22 INFO  : Logs_Intermediates/Gis/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.abcn_annotated.vcf: Copied (new)
2026/06/04 17:50:22 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.combined.counts.txt.gz: Copied (new)
2026/06/04 17:50:22 INFO  : Logs_Intermediates/Gis/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:50:22 INFO  : Logs_Intermediates/Gis/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.baf.bedgraph.gz.gzi: Copied (new)
2026/06/04 17:50:22 INFO  : Logs_Intermediates/Gis/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.gis.json: Copied (new)
2026/06/04 17:50:22 INFO  : Logs_Intermediates/Gis/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780524351899_251415.log: Copied (new)
2026/06/04 17:50:22 INFO  : Logs_Intermediates/Gis/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.baf.bedgraph.gz: Copied (new)
2026/06/04 17:50:22 INFO  : ica_logs/bpe1-38386f8c-9796-4ea7-9fb5-4ea61fca1c4c-1pre/17/stderr.grtnk.log: Copied (new)
2026/06/04 17:50:22 INFO  : Logs_Intermediates/Gis/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780524351891_251415.log: Copied (new)
2026/06/04 17:50:22 INFO  : ica_logs/bpe1-38386f8c-9796-4ea7-9fb5-4ea61fca1c4c-1pre/17/stdout.grtnk.log: Copied (new)
2026/06/04 17:50:22 INFO  : Logs_Intermediates/Gis/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna_logRatio.tsv: Copied (new)
2026/06/04 17:50:22 INFO  : Logs_Intermediates/Gis/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna_bAllele.tsv: Copied (new)
2026/06/04 17:50:22 INFO  : Logs_Intermediates/Gis/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna_logRatio.original.tsv: Copied (new)
2026/06/04 17:50:22 INFO  : ica_logs/.nextflow/cache/859734da-7fdb-4510-9acb-e62ab3fa01f8/db/000003.log: Copied (new)
2026/06/04 17:50:22 INFO  : ica_logs/out/Logs_Intermediates/Annotation/1173_CPJ-T1-TDNA-01_HLNLMDRX7_1_dna/Nirvana-20260603223712.log: Copied (new)
2026/06/04 17:50:22 INFO  : Logs_Intermediates/DnaCoverageReports/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/06/04 17:50:22 INFO  : Logs_Intermediates/Tmb/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:50:22 INFO  : Logs_Intermediates/Tmb/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:50:22 INFO  : Logs_Intermediates/DnaCoverageReports/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.gene_cov_report.tsv: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/DnaCoverageReports/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.exon_cov_report.tsv: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/Tmb/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/Gis/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna_raw.tsv: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/Tmb/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/Tmb/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/Tmb/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.tmb.metrics.csv: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/Tmb/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/Tmb/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.tmb.trace.tsv: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/Tmb/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780526879604_337323.log: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/Tmb/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780526879597_337323.log: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/Annotation/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_Annotated.json.gz: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/Contamination/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna_contamination.json: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/Tmb/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603205858.log: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/Contamination/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/Spoiler-20260603225601.log: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/Tmb/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/06/04 17:50:23 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/06/04 17:50:24 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780524545149_257268.log: Copied (new)
2026/06/04 17:50:24 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780524545142_257268.log: Copied (new)
2026/06/04 17:50:24 INFO  : Results/659_qZ-T1-TDNA-1_HLNLMDRX7_1/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_Annotated.json.gz: Copied (new)
2026/06/04 17:50:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.bam.md5sum: Copied (new)
2026/06/04 17:50:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:50:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.gff3: Copied (new)
2026/06/04 17:50:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:50:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/06/04 17:50:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
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2026/06/04 17:50:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:50:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:50:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/06/04 17:50:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.bam.bai: Copied (new)
2026/06/04 17:50:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/06/04 17:50:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/06/04 17:50:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.exon_hist.csv: Copied (new)
2026/06/04 17:50:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/06/04 17:50:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/06/04 17:50:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.fastq_list.csv: Copied (new)
2026/06/04 17:50:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/06/04 17:50:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/06/04 17:50:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/06/04 17:50:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:50:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.fastqc_metrics.csv: Copied (new)
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2026/06/04 17:50:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/06/04 17:50:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/06/04 17:50:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:50:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/06/04 17:50:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
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2026/06/04 17:50:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.insert-stats.tab: Copied (new)
2026/06/04 17:50:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/06/04 17:50:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_log.txt: Copied (new)
2026/06/04 17:50:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/06/04 17:50:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_output.json: Copied (new)
2026/06/04 17:50:25 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.combined.counts.txt.gz: Copied (new)
2026/06/04 17:50:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/06/04 17:50:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
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2026/06/04 17:50:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
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2026/06/04 17:50:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
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2026/06/04 17:50:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
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2026/06/04 17:50:27 INFO  : Logs_Intermediates/LrCalculator/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/LrCalculator-20260603224959.log: Copied (new)
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2026/06/04 17:50:33 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/06/04 17:50:33 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:50:33 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:50:33 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:50:33 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:50:34 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/06/04 17:50:34 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.insert-stats.tab: Copied (new)
2026/06/04 17:50:34 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/06/04 17:50:34 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_log.txt: Copied (new)
2026/06/04 17:50:34 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_output.json: Copied (new)
2026/06/04 17:50:34 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/06/04 17:50:34 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:50:34 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:50:34 INFO  : Logs_Intermediates/SampleAnalysisResults/659_cZs-T1-TDNA-1_HLNLMDRX7_1_SARJeantLog-20260603230849.log: Copied (new)
2026/06/04 17:50:34 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:50:34 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.pileup.txt: Copied (new)
2026/06/04 17:50:34 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:50:34 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:50:34 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:50:34 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:50:34 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:50:34 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:50:34 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:50:34 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:50:34 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:50:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/06/04 17:50:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/06/04 17:50:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/06/04 17:50:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/06/04 17:50:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/06/04 17:50:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/06/04 17:50:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:50:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:50:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/06/04 17:50:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/06/04 17:50:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/06/04 17:50:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/06/04 17:50:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/06/04 17:50:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/06/04 17:50:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/06/04 17:50:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:50:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:50:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/06/04 17:50:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:50:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/06/04 17:50:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/06/04 17:50:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/06/04 17:50:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/06/04 17:50:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/06/04 17:50:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/06/04 17:50:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/06/04 17:50:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/06/04 17:50:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/06/04 17:50:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions.txt: Copied (new)
2026/06/04 17:50:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780519318103_80455.log: Copied (new)
2026/06/04 17:50:36 INFO  : Logs_Intermediates/LrCalculator/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
2026/06/04 17:50:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780519318119_80455.log: Copied (new)
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2026/06/04 17:50:36 INFO  : Logs_Intermediates/LrAnnotation/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna_DNAExonCNV_Annotated.json.gz: Copied (new)
2026/06/04 17:50:36 INFO  : Logs_Intermediates/LrAnnotation/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna_DNAExonCNV_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:50:36 INFO  : Logs_Intermediates/LrAnnotation/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603223439.log: Copied (new)
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2026/06/04 17:50:37 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:50:37 INFO  : Logs_Intermediates/Annotation/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603224002.log: Copied (new)
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2026/06/04 17:50:37 INFO  : Logs_Intermediates/FastqGeneration/1173_CPJ-T1-TDNA-01_HLNLMDRX7_1_dna/1173_CPJ-T1-TDNA-01_HLNLMDRX7_1_dna_S25_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:50:37 INFO  : Results/659_32-T1-TDNA-1_HLNLMDRX7_1/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf: Copied (new)
2026/06/04 17:50:37 INFO  : Logs_Intermediates/Gis/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
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2026/06/04 17:50:37 INFO  : Logs_Intermediates/Gis/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.abcn_genes.tsv: Copied (new)
2026/06/04 17:50:37 INFO  : Logs_Intermediates/Gis/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.baf.bedgraph.gz.gzi: Copied (new)
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2026/06/04 17:50:38 INFO  : Logs_Intermediates/Gis/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.gis.json: Copied (new)
2026/06/04 17:50:38 INFO  : Logs_Intermediates/Gis/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
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2026/06/04 17:50:38 INFO  : Logs_Intermediates/Gis/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna_logRatio.original.tsv: Copied (new)
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2026/06/04 17:50:39 INFO  : Logs_Intermediates/Gis/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780523299775_219662.log: Copied (new)
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2026/06/04 17:50:39 INFO  : Logs_Intermediates/Contamination/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna_contamination.json: Copied (new)
2026/06/04 17:50:39 INFO  : Logs_Intermediates/SampleAnalysisResults/659_dZX-T1-TDNA-1_HLNLMDRX7_1_SARJeantLog-20260603230640.log: Copied (new)
2026/06/04 17:50:39 INFO  : Logs_Intermediates/Contamination/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/Spoiler-20260603224722.log: Copied (new)
2026/06/04 17:50:39 INFO  : ica_logs/bpe1-38386f8c-9796-4ea7-9fb5-4ea61fca1c4c-1pre/19/stderr.grtnk.log: Copied (new)
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2026/06/04 17:50:39 INFO  : Logs_Intermediates/CombinedVariantOutput/659_bea-T1-TDNA-1_HLNLMDRX7_1/659_bea-T1-TDNA-1_HLNLMDRX7_1_CombinedVariantOutput.tsv: Copied (new)
2026/06/04 17:50:40 INFO  : ica_logs/out/Logs_Intermediates/Annotation/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603223335.log: Copied (new)
2026/06/04 17:50:40 INFO  : Logs_Intermediates/Tmb/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:50:40 INFO  : Logs_Intermediates/Tmb/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:50:40 INFO  : Logs_Intermediates/Tmb/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:50:40 INFO  : Logs_Intermediates/Tmb/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:50:40 INFO  : Logs_Intermediates/Tmb/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:50:40 INFO  : Logs_Intermediates/Tmb/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.tmb.metrics.csv: Copied (new)
2026/06/04 17:50:40 INFO  : Logs_Intermediates/Tmb/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:50:40 INFO  : Logs_Intermediates/Tmb/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.tmb.trace.tsv: Copied (new)
2026/06/04 17:50:40 INFO  : Logs_Intermediates/Tmb/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603201809.log: Copied (new)
2026/06/04 17:50:40 INFO  : Logs_Intermediates/Tmb/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780525869633_305881.log: Copied (new)
2026/06/04 17:50:40 INFO  : Logs_Intermediates/Tmb/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780525869626_305881.log: Copied (new)
2026/06/04 17:50:41 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:50:41 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:50:41 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:50:41 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:50:41 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
2026/06/04 17:50:41 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:50:41 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:50:41 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:50:41 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:50:41 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:50:41 INFO  : Results/659_byZ-T1-TDNA-1_HLNLMDRX7_1/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf: Copied (new)
2026/06/04 17:50:41 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:50:42 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/06/04 17:50:42 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:50:42 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:50:42 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:50:42 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/06/04 17:50:42 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:50:42 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780523122684_212875.log: Copied (new)
2026/06/04 17:50:42 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:50:42 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780523122676_212875.log: Copied (new)
2026/06/04 17:50:42 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.combined.counts.txt.gz: Copied (new)
2026/06/04 17:50:42 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.bam.md5sum: Copied (new)
2026/06/04 17:50:42 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:50:42 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.gff3: Copied (new)
2026/06/04 17:50:42 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:50:43 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/06/04 17:50:43 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/06/04 17:50:43 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:50:43 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/06/04 17:50:43 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/06/04 17:50:43 INFO  : Logs_Intermediates/FastqGeneration/1173_M5U-T1-TDNA-01_HLNLMDRX7_1_dna/1173_M5U-T1-TDNA-01_HLNLMDRX7_1_dna_S32_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:50:43 INFO  : Logs_Intermediates/FastqGeneration/1173_CPJ-T1-TDNA-01_HLNLMDRX7_1_dna/1173_CPJ-T1-TDNA-01_HLNLMDRX7_1_dna_S25_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:50:43 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/06/04 17:50:43 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/06/04 17:50:43 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/06/04 17:50:43 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.exon_hist.csv: Copied (new)
2026/06/04 17:50:43 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/06/04 17:50:43 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.bam.bai: Copied (new)
2026/06/04 17:50:43 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.fastq_list.csv: Copied (new)
2026/06/04 17:50:43 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/06/04 17:50:43 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:50:43 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/06/04 17:50:43 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/06/04 17:50:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/06/04 17:50:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/06/04 17:50:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/06/04 17:50:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/06/04 17:50:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/06/04 17:50:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:50:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:50:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.insert-stats.tab: Copied (new)
2026/06/04 17:50:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:50:44 INFO  : Logs_Intermediates/FastqGeneration/1173_CPJ-T1-TDNA-01_HLNLMDRX7_1_dna/1173_CPJ-T1-TDNA-01_HLNLMDRX7_1_dna_S25_L002_R2_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:50:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:50:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/06/04 17:50:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_log.txt: Copied (new)
2026/06/04 17:50:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/06/04 17:50:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_output.json: Copied (new)
2026/06/04 17:50:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:50:44 INFO  : Logs_Intermediates/Tmb/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz: Copied (new)
2026/06/04 17:50:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:50:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/06/04 17:50:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.pileup.txt: Copied (new)
2026/06/04 17:50:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:50:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:50:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:50:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:50:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:50:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:50:44 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:50:45 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:50:45 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
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2026/06/04 17:50:49 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.bam.md5sum: Copied (new)
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2026/06/04 17:50:49 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.bam.bai: Copied (new)
2026/06/04 17:50:49 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.gff3: Copied (new)
2026/06/04 17:50:49 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:50:49 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/06/04 17:50:49 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/06/04 17:50:49 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:50:49 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/06/04 17:50:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/06/04 17:50:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/06/04 17:50:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/06/04 17:50:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/06/04 17:50:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.exon_hist.csv: Copied (new)
2026/06/04 17:50:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/06/04 17:50:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:50:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/06/04 17:50:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.fastq_list.csv: Copied (new)
2026/06/04 17:50:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/06/04 17:50:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/06/04 17:50:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/06/04 17:50:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/06/04 17:50:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/06/04 17:50:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/06/04 17:50:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/06/04 17:50:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:50:52 INFO  : 
Transferred:   	   73.779 GiB / 409.891 GiB, 18%, 1.318 GiB/s, ETA 4m15s
Transferred:         2225 / 12321, 18%
Elapsed time:       1m0.0s
Transferring:
 * Logs_Intermediates/Fas…5_L002_R1_001.fastq.gz: 96% /1.572Gi, 25.749Mi/s, 2s
 * Logs_Intermediates/Fas…2_L001_R1_001.fastq.gz: 98% /1.980Gi, 34.527Mi/s, 0s
 * Logs_Intermediates/Fas…2_L001_R2_001.fastq.gz: 80% /2.055Gi, 25.318Mi/s, 16s
 * Logs_Intermediates/Fas…2_L002_R1_001.fastq.gz: 73% /1.988Gi, 24.246Mi/s, 21s
 * Logs_Intermediates/Fas…2_L002_R2_001.fastq.gz: 67% /2.068Gi, 19.311Mi/s, 35s
 * Logs_Intermediates/Fas…2_L001_R2_001.fastq.gz: 89% /1.563Gi, 24.682Mi/s, 6s
 * Logs_Intermediates/Fas…2_L002_R1_001.fastq.gz: 93% /1.542Gi, 20.618Mi/s, 5s
 * Logs_Intermediates/Fas…2_L002_R2_001.fastq.gz: 96% /1.586Gi, 27.405Mi/s, 2s
 * Logs_Intermediates/Fas…4_L001_R1_001.fastq.gz: 79% /2.092Gi, 23.893Mi/s, 18s
 * Logs_Intermediates/Fas…4_L001_R2_001.fastq.gz: 73% /2.155Gi, 24.386Mi/s, 23s
 * Logs_Intermediates/Fas…4_L002_R1_001.fastq.gz: 95% /2.099Gi, 27.487Mi/s, 3s
 * Logs_Intermediates/Fas…4_L002_R2_001.fastq.gz: 49% /2.166Gi, 13.714Mi/s, 1m22s
 * Logs_Intermediates/Fas…2_L001_R1_001.fastq.gz: 96% /1.658Gi, 25.975Mi/s, 2s
 * Logs_Intermediates/Fas…2_L001_R2_001.fastq.gz: 84% /1.710Gi, 21.033Mi/s, 13s
 * Logs_Intermediates/Fas…2_L002_R1_001.fastq.gz: 98% /1.674Gi, 19.687Mi/s, 1s
 * Logs_Intermediates/Fas…2_L002_R2_001.fastq.gz: 88% /1.728Gi, 23.401Mi/s, 8s
 * Logs_Intermediates/Dna…01_HLNLMDRX7_1_dna.bam: 35% /4.461Gi, 22.128Mi/s, 2m12s
 * Logs_Intermediates/Dna…01_HLNLMDRX7_1_dna.bam: 31% /4.128Gi, 22.461Mi/s, 2m9s
 * Logs_Intermediates/Fas…1_L001_R1_001.fastq.gz: 65% /1.991Gi, 25.219Mi/s, 27s
 * Logs_Intermediates/Fas…1_L001_R2_001.fastq.gz: 80% /1.946Gi, 32.488Mi/s, 12s
 * Logs_Intermediates/Fas…1_L002_R1_001.fastq.gz: 59% /1.999Gi, 24.082Mi/s, 34s
 * Logs_Intermediates/Fas…1_L002_R2_001.fastq.gz: 90% /1.947Gi, 33.619Mi/s, 5s
 * Results/659_bea-T1-TDN…dna.hard-filtered.gvcf: 30% /139.410Mi, 790.976Ki/s, 2m4s
 * Results/659_dot-T1-TDN…dna.hard-filtered.gvcf: 97% /137.043Mi, 1.607Mi/s, 2s
 * Results/659_eJY-T1-TDN…dna.hard-filtered.gvcf: 94% /141.446Mi, 3.043Mi/s, 2s
 * Logs_Intermediates/Fas…4_L001_R1_001.fastq.gz: 78% /1.906Gi, 33.695Mi/s, 12s
 * Logs_Intermediates/Fas…4_L001_R2_001.fastq.gz: 70% /1.982Gi, 31.744Mi/s, 18s
 * Logs_Intermediates/Fas…4_L002_R1_001.fastq.gz: 60% /1.909Gi, 27.283Mi/s, 28s
 * Logs_Intermediates/Fas…4_L002_R2_001.fastq.gz: 58% /1.987Gi, 23.351Mi/s, 36s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 22% /4.929Gi, 22.856Mi/s, 2m50s
 * Logs_Intermediates/Fas…0_L001_R1_001.fastq.gz: 66% /1.318Gi, 22.140Mi/s, 20s
 * Logs_Intermediates/Fas…0_L001_R2_001.fastq.gz: 90% /1.239Gi, 29.584Mi/s, 3s
 * Logs_Intermediates/Fas…0_L002_R1_001.fastq.gz: 71% /1.303Gi, 31.109Mi/s, 12s
 * Logs_Intermediates/Fas…0_L002_R2_001.fastq.gz: 76% /1.219Gi, 23.920Mi/s, 12s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 21% /5.160Gi, 29.474Mi/s, 2m21s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 19% /4.711Gi, 27.128Mi/s, 2m23s
 * Logs_Intermediates/Fas…8_L001_R1_001.fastq.gz: 46% /2.307Gi, 33.220Mi/s, 38s
 * Logs_Intermediates/Fas…8_L001_R2_001.fastq.gz: 36% /2.340Gi, 23.843Mi/s, 1m4s
 * Logs_Intermediates/Fas…8_L002_R1_001.fastq.gz: 43% /2.292Gi, 29.770Mi/s, 44s
 * Logs_Intermediates/Fas…8_L002_R2_001.fastq.gz: 32% /2.326Gi, 21.464Mi/s, 1m15s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 15% /4.999Gi, 25.496Mi/s, 2m50s
 * Results/659_qZ-T1-TDNA…dna.hard-filtered.gvcf: 83% /137.086Mi, 3.793Mi/s, 6s
 * Logs_Intermediates/Fas…1_L001_R1_001.fastq.gz: 40% /1.779Gi, 24.031Mi/s, 45s
 * Logs_Intermediates/Fas…1_L001_R2_001.fastq.gz: 42% /1.846Gi, 28.751Mi/s, 37s
 * Logs_Intermediates/Fas…1_L002_R1_001.fastq.gz: 42% /1.784Gi, 27.684Mi/s, 38s
 * Logs_Intermediates/Fas…1_L002_R2_001.fastq.gz: 40% /1.856Gi, 23.986Mi/s, 47s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 15% /5.417Gi, 27.058Mi/s, 2m53s
 * Logs_Intermediates/Fas…4_L001_R1_001.fastq.gz: 42% /1.678Gi, 29.285Mi/s, 33s
 * Logs_Intermediates/Fas…4_L001_R2_001.fastq.gz: 34% /1.732Gi, 24.080Mi/s, 48s
 * Logs_Intermediates/Fas…4_L002_R1_001.fastq.gz: 47% /1.702Gi, 34.735Mi/s, 26s
 * Logs_Intermediates/Fas…4_L002_R2_001.fastq.gz: 24% /1.759Gi, 16.572Mi/s, 1m21s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 14% /3.966Gi, 28.262Mi/s, 2m3s
 * Logs_Intermediates/Fas…8_L001_R1_001.fastq.gz: 32% /1.635Gi, 36.267Mi/s, 31s
 * Logs_Intermediates/Fas…8_L001_R2_001.fastq.gz: 27% /1.684Gi, 34.172Mi/s, 36s
 * Logs_Intermediates/Fas…8_L002_R1_001.fastq.gz: 22% /1.646Gi, 25.143Mi/s, 51s
 * Logs_Intermediates/Fas…8_L002_R2_001.fastq.gz: 28% /1.696Gi, 34.286Mi/s, 36s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam:  3% /4.751Gi, 21.333Mi/s, 3m39s
 * Logs_Intermediates/Fas…3_L001_R1_001.fastq.gz:  4% /2.227Gi, 24.000Mi/s, 1m31s
 * Logs_Intermediates/Fas…3_L001_R2_001.fastq.gz:  2% /2.205Gi, 16.000Mi/s, 2m17s
 * Logs_Intermediates/Fas…3_L002_R1_001.fastq.gz:  0% /2.236Gi, 0/s, -
 * Logs_Intermediates/Fas…3_L002_R2_001.fastq.gz:  4% /2.207Gi, 24.000Mi/s, 1m30s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam:  0% /5.229Gi, 10.667Mi/s, 8m18s
 * Logs_Intermediates/Dna….hard-filtered.gvcf.gz:  5% /17.659Mi, 0/s, -
 * Logs_Intermediates/Dna…filtered.vcf.gz.md5sum:100% /32, 0/s, -

2026/06/04 17:50:52 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:50:52 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:50:52 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:50:52 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.insert-stats.tab: Copied (new)
2026/06/04 17:50:52 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/06/04 17:50:52 INFO  : Logs_Intermediates/FastqGeneration/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna_S22_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:50:52 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/06/04 17:50:52 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_log.txt: Copied (new)
2026/06/04 17:50:53 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_output.json: Copied (new)
2026/06/04 17:50:53 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/06/04 17:50:53 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:50:53 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:50:53 INFO  : Logs_Intermediates/FastqGeneration/1173_M5U-T1-TDNA-01_HLNLMDRX7_1_dna/1173_M5U-T1-TDNA-01_HLNLMDRX7_1_dna_S32_L002_R2_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:50:53 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.pileup.txt: Copied (new)
2026/06/04 17:50:53 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:50:53 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:50:53 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:50:53 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:50:53 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:50:53 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:50:53 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:50:53 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:50:53 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:50:54 INFO  : Results/659_eJY-T1-TDNA-1_HLNLMDRX7_1/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf: Copied (new)
2026/06/04 17:50:54 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:50:54 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/06/04 17:50:54 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/06/04 17:50:54 INFO  : Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
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2026/06/04 17:50:57 INFO  : Results/659_qZ-T1-TDNA-1_HLNLMDRX7_1/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf: Copied (new)
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2026/06/04 17:50:57 INFO  : Logs_Intermediates/Gis/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna.gis.json: Copied (new)
2026/06/04 17:50:57 INFO  : Logs_Intermediates/Gis/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna.baf.bedgraph.gz: Copied (new)
2026/06/04 17:50:57 INFO  : Logs_Intermediates/Gis/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780522901965_207094.log: Copied (new)
2026/06/04 17:50:57 INFO  : Logs_Intermediates/Gis/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna_bAllele.tsv: Copied (new)
2026/06/04 17:50:57 INFO  : Logs_Intermediates/Gis/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780522901958_207094.log: Copied (new)
2026/06/04 17:50:57 INFO  : Logs_Intermediates/MetricsOutput/659_bsr-T1-TDNA-1_HLNLMDRX7_1/659_bsr-T1-TDNA-1_HLNLMDRX7_1_MetricsOutput.tsv: Copied (new)
2026/06/04 17:50:57 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1173_CPJ-T1-TDNA-01_HLNLMDRX7_1_dna/1173_CPJ-T1-TDNA-01_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:50:57 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1173_CPJ-T1-TDNA-01_HLNLMDRX7_1_dna/1173_CPJ-T1-TDNA-01_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:50:57 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1173_CPJ-T1-TDNA-01_HLNLMDRX7_1_dna/1173_CPJ-T1-TDNA-01_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:50:57 INFO  : Logs_Intermediates/Gis/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna_logRatio.tsv: Copied (new)
2026/06/04 17:50:57 INFO  : Logs_Intermediates/Annotation/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_Annotated.json.gz: Copied (new)
2026/06/04 17:50:57 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:50:57 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.bam.md5sum: Copied (new)
2026/06/04 17:50:57 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1173_CPJ-T1-TDNA-01_HLNLMDRX7_1_dna/dragen_syslog_1780518641160_63587.log: Copied (new)
2026/06/04 17:50:57 INFO  : Logs_Intermediates/Gis/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna_raw.tsv: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/06/04 17:50:58 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1173_CPJ-T1-TDNA-01_HLNLMDRX7_1_dna/dragen_run_1780518641176_63587.log: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.gff3: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/Gis/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna_logRatio.original.tsv: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.exon_hist.csv: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.fastq_list.csv: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.bam.bai: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.insert-stats.tab: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:50:58 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_log.txt: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_output.json: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.pileup.txt: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/06/04 17:50:59 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/06/04 17:51:00 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/06/04 17:51:00 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:51:00 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/06/04 17:51:00 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:51:00 INFO  : Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
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2026/06/04 17:51:05 INFO  : Logs_Intermediates/DnaDragenCaller/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/06/04 17:51:05 INFO  : Logs_Intermediates/DnaDragenCaller/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/06/04 17:51:05 INFO  : Logs_Intermediates/DnaDragenCaller/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/06/04 17:51:05 INFO  : Logs_Intermediates/DnaDragenCaller/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/06/04 17:51:05 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/09/9828a132ecec0d88f704a45671f9e4/.command.env: Copied (new)
2026/06/04 17:51:05 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/09/9828a132ecec0d88f704a45671f9e4/.command.begin: Copied (new)
2026/06/04 17:51:05 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/09/9828a132ecec0d88f704a45671f9e4/.command.err: Copied (new)
2026/06/04 17:51:05 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/09/9828a132ecec0d88f704a45671f9e4/.command.log: Copied (new)
2026/06/04 17:51:05 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/09/9828a132ecec0d88f704a45671f9e4/.command.out: Copied (new)
2026/06/04 17:51:05 INFO  : Logs_Intermediates/DnaDragenCaller/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions.txt: Copied (new)
2026/06/04 17:51:05 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/09/9828a132ecec0d88f704a45671f9e4/.command.run: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:51:06 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/09/9828a132ecec0d88f704a45671f9e4/.exitcode: Copied (new)
2026/06/04 17:51:06 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/09/9828a132ecec0d88f704a45671f9e4/.command.trace: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780517469303_7370.log: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/LrCalculator/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/LrCalculator-20260603223925.log: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/LrCalculator/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
2026/06/04 17:51:06 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1173_M5U-T1-TDNA-01_HLNLMDRX7_1_dna/1173_M5U-T1-TDNA-01_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:51:06 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1173_M5U-T1-TDNA-01_HLNLMDRX7_1_dna/1173_M5U-T1-TDNA-01_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780517469319_7370.log: Copied (new)
2026/06/04 17:51:06 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/09/9828a132ecec0d88f704a45671f9e4/.command.sh: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/FastqGeneration/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna_S2_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:51:06 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1173_M5U-T1-TDNA-01_HLNLMDRX7_1_dna/1173_M5U-T1-TDNA-01_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/FastqGeneration/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna_S14_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:51:06 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1173_M5U-T1-TDNA-01_HLNLMDRX7_1_dna/dragen_syslog_1780520328384_111448.log: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/FastqGeneration/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna_S11_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/FastqGeneration/1173_M5U-T1-TDNA-01_HLNLMDRX7_1_dna/1173_M5U-T1-TDNA-01_HLNLMDRX7_1_dna_S32_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:51:06 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/1173_M5U-T1-TDNA-01_HLNLMDRX7_1_dna/dragen_run_1780520328399_111448.log: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780526536863_322907.log: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/06/04 17:51:06 INFO  : ica_logs/out/Logs_Intermediates/Annotation/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603224905.log: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/DnaCoverageReports/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/DnaCoverageReports/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.gene_cov_report.tsv: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/Tmb/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:51:06 INFO  : ica_logs/out/Logs_Intermediates/Contamination/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna/Spoiler-20260603224724.log: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/DnaCoverageReports/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.exon_cov_report.tsv: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/Tmb/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/Tmb/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/Tmb/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/Tmb/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna.tmb.metrics.csv: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780526536856_322907.log: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/Tmb/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:51:06 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/08/a1dfb0ab825cf05cf05f7bb56cf83d/.command.begin: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/Tmb/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603201952.log: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/Tmb/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780526169728_316688.log: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/Tmb/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/Tmb/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780526169720_316688.log: Copied (new)
2026/06/04 17:51:06 INFO  : ica_logs/out/Logs_Intermediates/DnaCoverageReports/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/06/04 17:51:06 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/08/a1dfb0ab825cf05cf05f7bb56cf83d/.command.err: Copied (new)
2026/06/04 17:51:06 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/08/a1dfb0ab825cf05cf05f7bb56cf83d/.command.sh: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/Tmb/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna.tmb.trace.tsv: Copied (new)
2026/06/04 17:51:06 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/08/a1dfb0ab825cf05cf05f7bb56cf83d/.exitcode: Copied (new)
2026/06/04 17:51:06 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/09/17a587534130e52c402053c0ae94f8/.command.begin: Copied (new)
2026/06/04 17:51:06 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/08/a1dfb0ab825cf05cf05f7bb56cf83d/.command.trace: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/Contamination/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna_contamination.json: Copied (new)
2026/06/04 17:51:06 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/09/17a587534130e52c402053c0ae94f8/.command.err: Copied (new)
2026/06/04 17:51:06 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/08/a1dfb0ab825cf05cf05f7bb56cf83d/.command.log: Copied (new)
2026/06/04 17:51:06 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/08/a1dfb0ab825cf05cf05f7bb56cf83d/.command.run: Copied (new)
2026/06/04 17:51:06 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/09/17a587534130e52c402053c0ae94f8/.command.log: Copied (new)
2026/06/04 17:51:06 INFO  : Logs_Intermediates/Contamination/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/Spoiler-20260603230320.log: Copied (new)
2026/06/04 17:51:06 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/09/17a587534130e52c402053c0ae94f8/.command.out: Copied (new)
2026/06/04 17:51:06 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/09/17a587534130e52c402053c0ae94f8/.command.run: Copied (new)
2026/06/04 17:51:06 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/08/a1dfb0ab825cf05cf05f7bb56cf83d/.command.out: Copied (new)
2026/06/04 17:51:07 INFO  : Logs_Intermediates/Tmb/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz: Copied (new)
2026/06/04 17:51:07 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/09/17a587534130e52c402053c0ae94f8/.command.sh: Copied (new)
2026/06/04 17:51:07 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/09/17a587534130e52c402053c0ae94f8/.exitcode: Copied (new)
2026/06/04 17:51:07 INFO  : Logs_Intermediates/nextflow_work_logs/0c/0a99adf532edb56c9c3da72aa3d41a/.command.log: Copied (new)
2026/06/04 17:51:07 INFO  : Logs_Intermediates/nextflow_work_logs/0c/0a99adf532edb56c9c3da72aa3d41a/.command.err: Copied (new)
2026/06/04 17:51:07 INFO  : Logs_Intermediates/Annotation/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:51:07 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/09/17a587534130e52c402053c0ae94f8/.command.trace: Copied (new)
2026/06/04 17:51:07 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/09/17a587534130e52c402053c0ae94f8/Nirvana-20260603224956.log: Copied (new)
2026/06/04 17:51:07 INFO  : Logs_Intermediates/FastqGeneration/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna_S22_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:51:07 INFO  : Logs_Intermediates/nextflow_work_logs/0c/0a99adf532edb56c9c3da72aa3d41a/.command.out: Copied (new)
2026/06/04 17:51:07 INFO  : Logs_Intermediates/Annotation/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603223611.log: Copied (new)
2026/06/04 17:51:07 INFO  : Logs_Intermediates/nextflow_work_logs/0c/0a99adf532edb56c9c3da72aa3d41a/.command.run: Copied (new)
2026/06/04 17:51:07 INFO  : Logs_Intermediates/nextflow_work_logs/0c/0a99adf532edb56c9c3da72aa3d41a/.command.sh: Copied (new)
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2026/06/04 17:51:07 INFO  : Logs_Intermediates/LrAnnotation/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603225000.log: Copied (new)
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2026/06/04 17:51:07 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/02/27c091a7307e877e30db59bd5c7dde/.exitcode: Copied (new)
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2026/06/04 17:51:07 INFO  : ica_logs/bpe1-38386f8c-9796-4ea7-9fb5-4ea61fca1c4c-1pre/4/stdout.grtnk.log: Copied (new)
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2026/06/04 17:51:07 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.combined.counts.txt.gz: Copied (new)
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2026/06/04 17:51:07 INFO  : Logs_Intermediates/Tmb/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
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2026/06/04 17:51:07 INFO  : Logs_Intermediates/Tmb/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603213036.log: Copied (new)
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2026/06/04 17:51:08 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780520288180_112627.log: Copied (new)
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2026/06/04 17:51:08 INFO  : Logs_Intermediates/FastqGeneration/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/659_32-T1-TDNA-1_HLNLMDRX7_1_dna_S2_L002_R1_001.fastq.gz: Multi-thread Copied (new)
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2026/06/04 17:51:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:51:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:51:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:51:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:51:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:51:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:51:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:51:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:51:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:51:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:51:08 INFO  : Logs_Intermediates/FastqGeneration/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna_S14_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:51:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/06/04 17:51:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/06/04 17:51:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:51:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:51:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780525603194_292934.log: Copied (new)
2026/06/04 17:51:08 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/0a/cb5c9c570b296fa05a99e4dbe7ed7e/.command.begin: Copied (new)
2026/06/04 17:51:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780525603186_292934.log: Copied (new)
2026/06/04 17:51:08 INFO  : Logs_Intermediates/Tmb/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz: Copied (new)
2026/06/04 17:51:08 INFO  : Logs_Intermediates/DnaCoverageReports/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/06/04 17:51:08 INFO  : Logs_Intermediates/DnaCoverageReports/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.gene_cov_report.tsv: Copied (new)
2026/06/04 17:51:08 INFO  : Logs_Intermediates/DnaCoverageReports/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.exon_cov_report.tsv: Copied (new)
2026/06/04 17:51:08 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/0a/cb5c9c570b296fa05a99e4dbe7ed7e/.command.log: Copied (new)
2026/06/04 17:51:08 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/0a/cb5c9c570b296fa05a99e4dbe7ed7e/.command.run: Copied (new)
2026/06/04 17:51:08 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/0a/cb5c9c570b296fa05a99e4dbe7ed7e/.command.err: Copied (new)
2026/06/04 17:51:08 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/0a/cb5c9c570b296fa05a99e4dbe7ed7e/.command.sh: Copied (new)
2026/06/04 17:51:08 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/0a/cb5c9c570b296fa05a99e4dbe7ed7e/.exitcode: Copied (new)
2026/06/04 17:51:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:51:08 INFO  : ica_logs/work/03/c4e0fa9d4c06e1456969cbac6474fa/work/26/3e69b53ceaff7e501490f465acd62d/.command.log: Copied (new)
2026/06/04 17:51:08 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/0a/cb5c9c570b296fa05a99e4dbe7ed7e/.command.trace: Copied (new)
2026/06/04 17:51:08 INFO  : ica_logs/work/03/c4e0fa9d4c06e1456969cbac6474fa/work/26/3e69b53ceaff7e501490f465acd62d/.command.begin: Copied (new)
2026/06/04 17:51:08 INFO  : ica_logs/work/03/c4e0fa9d4c06e1456969cbac6474fa/work/26/3e69b53ceaff7e501490f465acd62d/.command.err: Copied (new)
2026/06/04 17:51:08 INFO  : ica_logs/work/03/c4e0fa9d4c06e1456969cbac6474fa/work/26/3e69b53ceaff7e501490f465acd62d/.command.out: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/0a/cb5c9c570b296fa05a99e4dbe7ed7e/.command.out: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/03/c4e0fa9d4c06e1456969cbac6474fa/work/26/3e69b53ceaff7e501490f465acd62d/.exitcode: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/03/c4e0fa9d4c06e1456969cbac6474fa/work/26/3e69b53ceaff7e501490f465acd62d/.command.sh: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/03/c4e0fa9d4c06e1456969cbac6474fa/work/26/3e69b53ceaff7e501490f465acd62d/.command.trace: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/03/c4e0fa9d4c06e1456969cbac6474fa/work/26/3e69b53ceaff7e501490f465acd62d/.command.run: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/out/Logs_Intermediates/Contamination/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna/Spoiler-20260603225559.log: Copied (new)
2026/06/04 17:51:09 INFO  : Logs_Intermediates/nextflow_work_logs/0d/3e1530cfc461d86e531194ed9a2430/.command.out: Copied (new)
2026/06/04 17:51:09 INFO  : Logs_Intermediates/nextflow_work_logs/0d/3e1530cfc461d86e531194ed9a2430/.command.log: Copied (new)
2026/06/04 17:51:09 INFO  : Logs_Intermediates/nextflow_work_logs/0d/3e1530cfc461d86e531194ed9a2430/.command.err: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/out/Logs_Intermediates/DnaCoverageReports/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/05/268e43c73e4bdcb1e2eb79d99b2df8/.command.begin: Copied (new)
2026/06/04 17:51:09 INFO  : Logs_Intermediates/nextflow_work_logs/0d/3e1530cfc461d86e531194ed9a2430/.command.run: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/05/268e43c73e4bdcb1e2eb79d99b2df8/.command.err: Copied (new)
2026/06/04 17:51:09 INFO  : Logs_Intermediates/nextflow_work_logs/0d/3e1530cfc461d86e531194ed9a2430/.command.sh: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/05/268e43c73e4bdcb1e2eb79d99b2df8/.command.sh: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/05/268e43c73e4bdcb1e2eb79d99b2df8/.exitcode: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/05/268e43c73e4bdcb1e2eb79d99b2df8/.command.run: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/05/268e43c73e4bdcb1e2eb79d99b2df8/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/05/268e43c73e4bdcb1e2eb79d99b2df8/.command.out: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/05/268e43c73e4bdcb1e2eb79d99b2df8/.command.log: Copied (new)
2026/06/04 17:51:09 INFO  : Logs_Intermediates/Annotation/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:51:09 INFO  : Logs_Intermediates/Annotation/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603224956.log: Copied (new)
2026/06/04 17:51:09 INFO  : Logs_Intermediates/Contamination/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/Spoiler-20260603230318.log: Copied (new)
2026/06/04 17:51:09 INFO  : Logs_Intermediates/Contamination/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna_contamination.json: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/04/04b7c44276b23ade69a7a4da2479ce/.command.err: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/05/268e43c73e4bdcb1e2eb79d99b2df8/.command.trace: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/04/04b7c44276b23ade69a7a4da2479ce/.command.begin: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/04/04b7c44276b23ade69a7a4da2479ce/.command.log: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/04/04b7c44276b23ade69a7a4da2479ce/.command.out: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/04/04b7c44276b23ade69a7a4da2479ce/.exitcode: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/04/04b7c44276b23ade69a7a4da2479ce/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/04/04b7c44276b23ade69a7a4da2479ce/.command.run: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/04/04b7c44276b23ade69a7a4da2479ce/.command.sh: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/04/04b7c44276b23ade69a7a4da2479ce/.command.trace: Copied (new)
2026/06/04 17:51:09 INFO  : Logs_Intermediates/LrAnnotation/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna_DNAExonCNV_Annotated.json.gz: Copied (new)
2026/06/04 17:51:09 INFO  : Logs_Intermediates/LrAnnotation/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna_DNAExonCNV_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/04/e760071eaf8c312c34e10a2b387af8/.command.begin: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/04/e760071eaf8c312c34e10a2b387af8/.command.err: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/04/e760071eaf8c312c34e10a2b387af8/.command.run: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/04/e760071eaf8c312c34e10a2b387af8/.exitcode: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/04/e760071eaf8c312c34e10a2b387af8/.command.log: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/04/e760071eaf8c312c34e10a2b387af8/.command.sh: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/04/e760071eaf8c312c34e10a2b387af8/.command.trace: Copied (new)
2026/06/04 17:51:09 INFO  : Logs_Intermediates/LrAnnotation/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603223443.log: Copied (new)
2026/06/04 17:51:09 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/04/e760071eaf8c312c34e10a2b387af8/.command.out: Copied (new)
2026/06/04 17:51:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:51:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.bam.md5sum: Copied (new)
2026/06/04 17:51:09 INFO  : Logs_Intermediates/CombinedVariantOutput/659_c8U-T1-TDNA-1_HLNLMDRX7_1/659_c8U-T1-TDNA-1_HLNLMDRX7_1_CombinedVariantOutput.tsv: Copied (new)
2026/06/04 17:51:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/06/04 17:51:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/06/04 17:51:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:51:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:51:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.gff3: Copied (new)
2026/06/04 17:51:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/06/04 17:51:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/06/04 17:51:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:51:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/06/04 17:51:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.exon_hist.csv: Copied (new)
2026/06/04 17:51:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/06/04 17:51:09 INFO  : Logs_Intermediates/Annotation/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_Annotated.json.gz: Copied (new)
2026/06/04 17:51:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/06/04 17:51:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.fastq_list.csv: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.bam.bai: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.insert-stats.tab: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_output.json: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_log.txt: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.pileup.txt: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/06/04 17:51:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:51:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/06/04 17:51:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/06/04 17:51:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:51:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/06/04 17:51:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/06/04 17:51:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/06/04 17:51:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:51:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:51:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/06/04 17:51:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/06/04 17:51:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/06/04 17:51:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/06/04 17:51:11 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/14/b73c3948a2b86e9be52b98bc2ce353/.command.begin: Copied (new)
2026/06/04 17:51:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/06/04 17:51:11 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/14/b73c3948a2b86e9be52b98bc2ce353/.command.err: Copied (new)
2026/06/04 17:51:11 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/14/b73c3948a2b86e9be52b98bc2ce353/.command.out: Copied (new)
2026/06/04 17:51:11 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/14/b73c3948a2b86e9be52b98bc2ce353/.command.log: Copied (new)
2026/06/04 17:51:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780521658695_148414.log: Copied (new)
2026/06/04 17:51:11 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/14/b73c3948a2b86e9be52b98bc2ce353/.command.sh: Copied (new)
2026/06/04 17:51:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780521658711_148414.log: Copied (new)
2026/06/04 17:51:11 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/14/b73c3948a2b86e9be52b98bc2ce353/.command.run: Copied (new)
2026/06/04 17:51:11 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/14/b73c3948a2b86e9be52b98bc2ce353/.command.trace: Copied (new)
2026/06/04 17:51:11 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/14/b73c3948a2b86e9be52b98bc2ce353/.exitcode: Copied (new)
2026/06/04 17:51:11 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/0f/8aac340e1dc5c56617814259409d20/.command.begin: Copied (new)
2026/06/04 17:51:11 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/0f/8aac340e1dc5c56617814259409d20/.command.env: Copied (new)
2026/06/04 17:51:11 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/0f/8aac340e1dc5c56617814259409d20/.command.err: Copied (new)
2026/06/04 17:51:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:51:11 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/0f/8aac340e1dc5c56617814259409d20/.command.log: Copied (new)
2026/06/04 17:51:11 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/0f/8aac340e1dc5c56617814259409d20/.command.out: Copied (new)
2026/06/04 17:51:11 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/0f/8aac340e1dc5c56617814259409d20/.command.run: Copied (new)
2026/06/04 17:51:11 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/0f/8aac340e1dc5c56617814259409d20/.exitcode: Copied (new)
2026/06/04 17:51:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions.txt: Copied (new)
2026/06/04 17:51:11 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/0f/8aac340e1dc5c56617814259409d20/.command.sh: Copied (new)
2026/06/04 17:51:11 INFO  : Logs_Intermediates/Gis/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.baf.bedgraph.gz: Copied (new)
2026/06/04 17:51:11 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/0f/8aac340e1dc5c56617814259409d20/.command.trace: Copied (new)
2026/06/04 17:51:11 INFO  : Logs_Intermediates/Gis/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.baf.bedgraph.gz.gzi: Copied (new)
2026/06/04 17:51:11 INFO  : Logs_Intermediates/Gis/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:51:11 INFO  : Logs_Intermediates/Gis/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
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2026/06/04 17:51:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.fragment_length_hist.csv: Copied (new)
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2026/06/04 17:51:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:51:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/06/04 17:51:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/06/04 17:51:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/06/04 17:51:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/06/04 17:51:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:51:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/06/04 17:51:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:51:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.insert-stats.tab: Copied (new)
2026/06/04 17:51:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/06/04 17:51:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/06/04 17:51:14 INFO  : Logs_Intermediates/FastqGeneration/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna_S4_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:51:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:51:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_log.txt: Copied (new)
2026/06/04 17:51:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/06/04 17:51:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_output.json: Copied (new)
2026/06/04 17:51:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:51:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:51:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:51:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.pileup.txt: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/06/04 17:51:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/06/04 17:51:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/06/04 17:51:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/06/04 17:51:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/06/04 17:51:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/06/04 17:51:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/06/04 17:51:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/06/04 17:51:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/06/04 17:51:16 INFO  : ica_logs/out/Logs_Intermediates/Annotation/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603224002.log: Copied (new)
2026/06/04 17:51:16 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/0a/539f11c1992d4ce31bdac07ddea559/.command.begin: Copied (new)
2026/06/04 17:51:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780520389174_114305.log: Copied (new)
2026/06/04 17:51:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:51:16 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/0a/539f11c1992d4ce31bdac07ddea559/.command.err: Copied (new)
2026/06/04 17:51:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780520389157_114305.log: Copied (new)
2026/06/04 17:51:16 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/0a/539f11c1992d4ce31bdac07ddea559/.command.out: Copied (new)
2026/06/04 17:51:16 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/0a/539f11c1992d4ce31bdac07ddea559/.command.log: Copied (new)
2026/06/04 17:51:16 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/0a/539f11c1992d4ce31bdac07ddea559/.command.run: Copied (new)
2026/06/04 17:51:16 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/0a/539f11c1992d4ce31bdac07ddea559/.command.trace: Copied (new)
2026/06/04 17:51:16 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/0a/539f11c1992d4ce31bdac07ddea559/.command.sh: Copied (new)
2026/06/04 17:51:16 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/0a/539f11c1992d4ce31bdac07ddea559/.exitcode: Copied (new)
2026/06/04 17:51:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.gff3: Copied (new)
2026/06/04 17:51:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:51:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:51:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/06/04 17:51:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/06/04 17:51:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/06/04 17:51:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:51:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:51:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:51:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions.txt: Copied (new)
2026/06/04 17:51:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:51:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/06/04 17:51:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/06/04 17:51:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780525312537_284612.log: Copied (new)
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2026/06/04 17:51:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/0b/8b2869513e072913a0bdc9bd864e88/.command.begin: Copied (new)
2026/06/04 17:51:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/0b/8b2869513e072913a0bdc9bd864e88/.command.err: Copied (new)
2026/06/04 17:51:20 INFO  : Logs_Intermediates/nextflow_work_logs/0a/fed44bd1d52f92585d49ac10bf3384/.command.sh: Copied (new)
2026/06/04 17:51:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/0b/8b2869513e072913a0bdc9bd864e88/.command.env: Copied (new)
2026/06/04 17:51:20 INFO  : Logs_Intermediates/FastqGeneration/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna_S20_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:51:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/0b/8b2869513e072913a0bdc9bd864e88/.command.out: Copied (new)
2026/06/04 17:51:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/0b/8b2869513e072913a0bdc9bd864e88/.exitcode: Copied (new)
2026/06/04 17:51:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/0b/8b2869513e072913a0bdc9bd864e88/.command.sh: Copied (new)
2026/06/04 17:51:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/0b/8b2869513e072913a0bdc9bd864e88/.command.run: Copied (new)
2026/06/04 17:51:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/0b/8b2869513e072913a0bdc9bd864e88/.command.log: Copied (new)
2026/06/04 17:51:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/0b/8b2869513e072913a0bdc9bd864e88/.command.trace: Copied (new)
2026/06/04 17:51:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/0c/0a99adf532edb56c9c3da72aa3d41a/.command.begin: Copied (new)
2026/06/04 17:51:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/0c/0a99adf532edb56c9c3da72aa3d41a/.command.err: Copied (new)
2026/06/04 17:51:21 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/0c/0a99adf532edb56c9c3da72aa3d41a/.command.sh: Copied (new)
2026/06/04 17:51:21 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/0c/0a99adf532edb56c9c3da72aa3d41a/.command.out: Copied (new)
2026/06/04 17:51:21 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/0c/0a99adf532edb56c9c3da72aa3d41a/.command.run: Copied (new)
2026/06/04 17:51:21 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/0c/0a99adf532edb56c9c3da72aa3d41a/.exitcode: Copied (new)
2026/06/04 17:51:21 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/0c/0a99adf532edb56c9c3da72aa3d41a/.command.trace: Copied (new)
2026/06/04 17:51:21 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/0c/0a99adf532edb56c9c3da72aa3d41a/.command.log: Copied (new)
2026/06/04 17:51:21 INFO  : Logs_Intermediates/Tmb/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:51:21 INFO  : Logs_Intermediates/Tmb/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:51:21 INFO  : Logs_Intermediates/Tmb/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:51:21 INFO  : Logs_Intermediates/Tmb/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:51:21 INFO  : Logs_Intermediates/Tmb/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:51:21 INFO  : Logs_Intermediates/Tmb/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.tmb.trace.tsv: Copied (new)
2026/06/04 17:51:21 INFO  : Logs_Intermediates/Tmb/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.tmb.metrics.csv: Copied (new)
2026/06/04 17:51:21 INFO  : Logs_Intermediates/Tmb/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:51:21 INFO  : Logs_Intermediates/Tmb/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780526044966_314144.log: Copied (new)
2026/06/04 17:51:21 INFO  : Logs_Intermediates/Tmb/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz: Copied (new)
2026/06/04 17:51:21 INFO  : Logs_Intermediates/Tmb/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603211231.log: Copied (new)
2026/06/04 17:51:21 INFO  : Logs_Intermediates/Tmb/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780526044958_314144.log: Copied (new)
2026/06/04 17:51:21 INFO  : Logs_Intermediates/nextflow_work_logs/0f/3786a4dbeb7861783c68174e458759/.command.err: Copied (new)
2026/06/04 17:51:21 INFO  : Logs_Intermediates/nextflow_work_logs/0f/3786a4dbeb7861783c68174e458759/.command.log: Copied (new)
2026/06/04 17:51:21 INFO  : Logs_Intermediates/nextflow_work_logs/0f/3786a4dbeb7861783c68174e458759/.command.out: Copied (new)
2026/06/04 17:51:21 INFO  : Logs_Intermediates/nextflow_work_logs/0f/3786a4dbeb7861783c68174e458759/.command.run: Copied (new)
2026/06/04 17:51:21 INFO  : Logs_Intermediates/nextflow_work_logs/0f/3786a4dbeb7861783c68174e458759/.command.sh: Copied (new)
2026/06/04 17:51:21 INFO  : ica_logs/bpe1-38386f8c-9796-4ea7-9fb5-4ea61fca1c4c-1pre/6/stderr.grtnk.log: Copied (new)
2026/06/04 17:51:21 INFO  : Logs_Intermediates/Tmb/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz: Copied (new)
2026/06/04 17:51:21 INFO  : ica_logs/bpe1-38386f8c-9796-4ea7-9fb5-4ea61fca1c4c-1pre/6/stdout.grtnk.log: Copied (new)
2026/06/04 17:51:21 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:51:21 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:51:21 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:51:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0a/bc85d50d2b13f641aaf5be9063d69c/.command.begin: Copied (new)
2026/06/04 17:51:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0a/bc85d50d2b13f641aaf5be9063d69c/.command.err: Copied (new)
2026/06/04 17:51:22 INFO  : 
Transferred:   	  115.738 GiB / 409.902 GiB, 28%, 1.399 GiB/s, ETA 3m30s
Transferred:         3312 / 13408, 25%
Elapsed time:      1m30.0s
Transferring:
 * Logs_Intermediates/Fas…2_L002_R2_001.fastq.gz: 98% /2.068Gi, 16.540Mi/s, 1s
 * Logs_Intermediates/Fas…4_L001_R2_001.fastq.gz: 98% /2.155Gi, 20.644Mi/s, 1s
 * Logs_Intermediates/Fas…4_L002_R2_001.fastq.gz: 76% /2.166Gi, 18.331Mi/s, 28s
 * Logs_Intermediates/Dna…01_HLNLMDRX7_1_dna.bam: 54% /4.461Gi, 25.568Mi/s, 1m21s
 * Logs_Intermediates/Dna…01_HLNLMDRX7_1_dna.bam: 48% /4.128Gi, 29.308Mi/s, 1m14s
 * Logs_Intermediates/Fas…1_L001_R1_001.fastq.gz: 97% /1.991Gi, 22.442Mi/s, 2s
 * Logs_Intermediates/Fas…1_L002_R1_001.fastq.gz: 98% /1.999Gi, 28.390Mi/s, 1s
 * Results/659_bea-T1-TDN…dna.hard-filtered.gvcf: 59% /139.410Mi, 1.235Mi/s, 45s
 * Logs_Intermediates/Fas…4_L002_R2_001.fastq.gz: 98% /1.987Gi, 27.927Mi/s, 1s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 41% /4.929Gi, 28.159Mi/s, 1m45s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 38% /5.160Gi, 27.226Mi/s, 2m0s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 35% /4.711Gi, 25.491Mi/s, 2m2s
 * Logs_Intermediates/Fas…8_L001_R1_001.fastq.gz: 82% /2.307Gi, 29.542Mi/s, 13s
 * Logs_Intermediates/Fas…8_L001_R2_001.fastq.gz: 68% /2.340Gi, 26.925Mi/s, 28s
 * Logs_Intermediates/Fas…8_L002_R1_001.fastq.gz: 83% /2.292Gi, 34.677Mi/s, 11s
 * Logs_Intermediates/Fas…8_L002_R2_001.fastq.gz: 59% /2.326Gi, 24.080Mi/s, 40s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 33% /4.999Gi, 29.095Mi/s, 1m56s
 * Logs_Intermediates/Fas…1_L001_R1_001.fastq.gz: 94% /1.779Gi, 35.447Mi/s, 2s
 * Logs_Intermediates/Fas…1_L001_R2_001.fastq.gz: 86% /1.846Gi, 27.627Mi/s, 9s
 * Logs_Intermediates/Fas…1_L002_R1_001.fastq.gz: 96% /1.784Gi, 31.974Mi/s, 2s
 * Logs_Intermediates/Fas…1_L002_R2_001.fastq.gz: 88% /1.856Gi, 29.744Mi/s, 7s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 28% /5.417Gi, 26.662Mi/s, 2m28s
 * Logs_Intermediates/Fas…4_L001_R1_001.fastq.gz: 83% /1.678Gi, 24.826Mi/s, 11s
 * Logs_Intermediates/Fas…4_L001_R2_001.fastq.gz: 84% /1.732Gi, 27.299Mi/s, 9s
 * Logs_Intermediates/Fas…4_L002_R1_001.fastq.gz: 93% /1.702Gi, 28.486Mi/s, 3s
 * Logs_Intermediates/Fas…4_L002_R2_001.fastq.gz: 74% /1.759Gi, 29.087Mi/s, 15s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 34% /3.966Gi, 29.103Mi/s, 1m31s
 * Logs_Intermediates/Fas…8_L001_R1_001.fastq.gz: 80% /1.635Gi, 25.074Mi/s, 13s
 * Logs_Intermediates/Fas…8_L001_R2_001.fastq.gz: 85% /1.684Gi, 32.152Mi/s, 7s
 * Logs_Intermediates/Fas…8_L002_R1_001.fastq.gz: 74% /1.646Gi, 28.335Mi/s, 15s
 * Logs_Intermediates/Fas…8_L002_R2_001.fastq.gz: 73% /1.696Gi, 26.564Mi/s, 17s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 17% /4.751Gi, 20.141Mi/s, 3m20s
 * Logs_Intermediates/Fas…3_L001_R1_001.fastq.gz: 49% /2.227Gi, 34.197Mi/s, 33s
 * Logs_Intermediates/Fas…3_L001_R2_001.fastq.gz: 38% /2.205Gi, 24.122Mi/s, 57s
 * Logs_Intermediates/Fas…3_L002_R1_001.fastq.gz: 39% /2.236Gi, 25.263Mi/s, 55s
 * Logs_Intermediates/Fas…3_L002_R2_001.fastq.gz: 43% /2.207Gi, 29.650Mi/s, 42s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 18% /5.229Gi, 29.517Mi/s, 2m27s
 * Logs_Intermediates/Fas…2_L001_R1_001.fastq.gz: 30% /2.080Gi, 26.278Mi/s, 56s
 * Logs_Intermediates/Fas…2_L001_R2_001.fastq.gz: 31% /2.080Gi, 27.259Mi/s, 53s
 * Logs_Intermediates/Fas…2_L002_R1_001.fastq.gz: 36% /2.065Gi, 31.410Mi/s, 42s
 * Logs_Intermediates/Fas…2_L002_R2_001.fastq.gz: 27% /2.063Gi, 22.366Mi/s, 1m8s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 13% /4.573Gi, 26.621Mi/s, 2m31s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 10% /4.391Gi, 23.211Mi/s, 2m53s
 * Logs_Intermediates/Fas…9_L001_R1_001.fastq.gz: 14% /1.884Gi, 17.260Mi/s, 1m35s
 * Logs_Intermediates/Fas…9_L001_R2_001.fastq.gz: 22% /1.944Gi, 34.462Mi/s, 44s
 * Logs_Intermediates/Fas…9_L002_R1_001.fastq.gz: 18% /1.886Gi, 24.615Mi/s, 1m3s
 * Logs_Intermediates/Fas…9_L002_R2_001.fastq.gz: 12% /1.950Gi, 17.231Mi/s, 1m41s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam:  7% /5.364Gi, 34.666Mi/s, 2m26s
 * Logs_Intermediates/Fas…0_L001_R1_001.fastq.gz: 11% /1.640Gi, 18.021Mi/s, 1m22s
 * Logs_Intermediates/Fas…0_L001_R2_001.fastq.gz: 15% /1.665Gi, 24.889Mi/s, 58s
 * Logs_Intermediates/Fas…0_L002_R1_001.fastq.gz: 13% /1.651Gi, 17.778Mi/s, 1m22s
 * Logs_Intermediates/Fas…0_L002_R2_001.fastq.gz: 11% /1.676Gi, 21.333Mi/s, 1m11s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam:  3% /4.924Gi, 23.324Mi/s, 3m27s
 * Logs_Intermediates/Ann…ants_Annotated.json.gz: 54% /25.461Mi, 3.499Mi/s, 3s
 * ica_logs/work/67/bf96a…35e73e6f0/.command.log: 65% /67.149Mi, 11.665Mi/s, 1s
 * ica_logs/work/67/bf96a…35e73e6f0/.command.out: 26% /67.148Mi, 4.665Mi/s, 10s
 * Logs_Intermediates/Fas…6_L001_R1_001.fastq.gz:  0% /1.677Gi, 0/s, -
 * Logs_Intermediates/Fas…6_L001_R2_001.fastq.gz:  0% /1.786Gi, 0/s, -
 * Logs_Intermediates/Fas…6_L002_R1_001.fastq.gz:  0% /1.695Gi, 0/s, -
 * Logs_Intermediates/Fas…6_L002_R2_001.fastq.gz:  0% /1.810Gi, 0/s, -
 * ica_logs/out/Logs_Inte…780518126762_47179.log:100% /548.949Ki, 0/s, -
 * ica_logs/out/Logs_Inte…780518126747_47179.log:100% /141.823Ki, 0/s, -
 * ica_logs/work/c9/18d5f…e9063d69c/.command.log: transferring
 * ica_logs/work/c9/18d5f…e9063d69c/.command.out: transferring

2026/06/04 17:51:22 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780518126762_47179.log: Copied (new)
2026/06/04 17:51:22 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780518126747_47179.log: Copied (new)
2026/06/04 17:51:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0a/bc85d50d2b13f641aaf5be9063d69c/.command.log: Copied (new)
2026/06/04 17:51:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0a/bc85d50d2b13f641aaf5be9063d69c/.command.out: Copied (new)
2026/06/04 17:51:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0a/bc85d50d2b13f641aaf5be9063d69c/.command.sh: Copied (new)
2026/06/04 17:51:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0a/bc85d50d2b13f641aaf5be9063d69c/.command.run: Copied (new)
2026/06/04 17:51:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0a/bc85d50d2b13f641aaf5be9063d69c/.exitcode: Copied (new)
2026/06/04 17:51:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0a/bc85d50d2b13f641aaf5be9063d69c/.command.trace: Copied (new)
2026/06/04 17:51:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0a/bc85d50d2b13f641aaf5be9063d69c/gen_coverage_reports.log: Copied (new)
2026/06/04 17:51:22 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/1173_CPJ-T1-TDNA-01_HLNLMDRX7_1_dna/Nirvana-20260603223928.log: Copied (new)
2026/06/04 17:51:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/.nextflow/cache/0f7407f7-8d20-4fcb-80dc-3853d740803d/db/000003.log: Copied (new)
2026/06/04 17:51:22 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/02/72751533bda83d9d20a6e93ba9a217/Tmb/dragen_syslog_1780526362108_326003.log: Copied (new)
2026/06/04 17:51:22 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/02/72751533bda83d9d20a6e93ba9a217/Tmb/dragen_run_1780526362116_326003.log: Copied (new)
2026/06/04 17:51:22 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/9a/7053d668c8ffebc33c749037e8dda5/.command.begin: Copied (new)
2026/06/04 17:51:22 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/9a/7053d668c8ffebc33c749037e8dda5/.command.err: Copied (new)
2026/06/04 17:51:22 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/9a/7053d668c8ffebc33c749037e8dda5/.command.log: Copied (new)
2026/06/04 17:51:22 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/9a/7053d668c8ffebc33c749037e8dda5/.command.out: Copied (new)
2026/06/04 17:51:22 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/9a/7053d668c8ffebc33c749037e8dda5/.command.run: Copied (new)
2026/06/04 17:51:22 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/9a/7053d668c8ffebc33c749037e8dda5/.exitcode: Copied (new)
2026/06/04 17:51:22 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/9a/7053d668c8ffebc33c749037e8dda5/.command.trace: Copied (new)
2026/06/04 17:51:22 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/9a/7053d668c8ffebc33c749037e8dda5/.command.sh: Copied (new)
2026/06/04 17:51:22 INFO  : Logs_Intermediates/nextflow_work_logs/0e/c903313d2bee4712b6e9a1efb59178/.command.env: Copied (new)
2026/06/04 17:51:22 INFO  : Logs_Intermediates/nextflow_work_logs/0e/c903313d2bee4712b6e9a1efb59178/.command.err: Copied (new)
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2026/06/04 17:51:23 INFO  : Logs_Intermediates/nextflow_work_logs/0e/c903313d2bee4712b6e9a1efb59178/.command.out: Copied (new)
2026/06/04 17:51:23 INFO  : Logs_Intermediates/nextflow_work_logs/0e/c903313d2bee4712b6e9a1efb59178/.command.run: Copied (new)
2026/06/04 17:51:23 INFO  : Logs_Intermediates/FastqGeneration/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna_S14_L002_R2_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:51:23 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/05/e1cfaafdffe6820aae90178d1cc16b/.command.err: Copied (new)
2026/06/04 17:51:23 INFO  : Logs_Intermediates/nextflow_work_logs/0e/c903313d2bee4712b6e9a1efb59178/.command.sh: Copied (new)
2026/06/04 17:51:23 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/05/e1cfaafdffe6820aae90178d1cc16b/.command.begin: Copied (new)
2026/06/04 17:51:23 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/05/e1cfaafdffe6820aae90178d1cc16b/.command.log: Copied (new)
2026/06/04 17:51:23 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/05/e1cfaafdffe6820aae90178d1cc16b/.command.out: Copied (new)
2026/06/04 17:51:23 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/05/e1cfaafdffe6820aae90178d1cc16b/.command.sh: Copied (new)
2026/06/04 17:51:23 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/05/e1cfaafdffe6820aae90178d1cc16b/.command.run: Copied (new)
2026/06/04 17:51:23 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/05/e1cfaafdffe6820aae90178d1cc16b/.command.trace: Copied (new)
2026/06/04 17:51:23 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/05/e1cfaafdffe6820aae90178d1cc16b/.exitcode: Copied (new)
2026/06/04 17:51:23 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/05/e1cfaafdffe6820aae90178d1cc16b/Nirvana-20260603223408.log: Copied (new)
2026/06/04 17:51:23 INFO  : ica_logs/out/Logs_Intermediates/DnaCoverageReports/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/06/04 17:51:23 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780524709444_263382.log: Copied (new)
2026/06/04 17:51:23 INFO  : ica_logs/out/Logs_Intermediates/Annotation/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603223112.log: Copied (new)
2026/06/04 17:51:23 INFO  : Logs_Intermediates/LrCalculator/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
2026/06/04 17:51:23 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780524709436_263382.log: Copied (new)
2026/06/04 17:51:23 INFO  : Logs_Intermediates/LrCalculator/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/LrCalculator-20260603223442.log: Copied (new)
2026/06/04 17:51:23 INFO  : ica_logs/out/Logs_Intermediates/Contamination/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/Spoiler-20260603230317.log: Copied (new)
2026/06/04 17:51:23 INFO  : Logs_Intermediates/DnaCoverageReports/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.gene_cov_report.tsv: Copied (new)
2026/06/04 17:51:23 INFO  : Logs_Intermediates/DnaCoverageReports/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/06/04 17:51:23 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:51:23 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:51:23 INFO  : Logs_Intermediates/DnaCoverageReports/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.exon_cov_report.tsv: Copied (new)
2026/06/04 17:51:23 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:51:23 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:51:23 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:51:23 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:51:24 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:51:24 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:51:24 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:51:24 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:51:24 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:51:24 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:51:24 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/06/04 17:51:24 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:51:24 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:51:24 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/06/04 17:51:24 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/18/93c5fd8375fd065af5d6235e73e6f0/.command.log: Copied (new)
2026/06/04 17:51:24 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780523459173_222355.log: Copied (new)
2026/06/04 17:51:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/0e/545598b7e4889af2a8371edb39e427/.command.begin: Copied (new)
2026/06/04 17:51:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/0e/545598b7e4889af2a8371edb39e427/.command.err: Copied (new)
2026/06/04 17:51:24 INFO  : Logs_Intermediates/Annotation/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_Annotated.json.gz: Copied (new)
2026/06/04 17:51:24 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780523459165_222355.log: Copied (new)
2026/06/04 17:51:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/0e/545598b7e4889af2a8371edb39e427/.command.out: Copied (new)
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2026/06/04 17:51:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/0e/545598b7e4889af2a8371edb39e427/.command.sh: Copied (new)
2026/06/04 17:51:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/0e/545598b7e4889af2a8371edb39e427/.exitcode: Copied (new)
2026/06/04 17:51:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/0e/545598b7e4889af2a8371edb39e427/.command.trace: Copied (new)
2026/06/04 17:51:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/0e/545598b7e4889af2a8371edb39e427/Nirvana-20260603210657.log: Copied (new)
2026/06/04 17:51:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0a/7e3436250fcb44d61a50d4a291e070/.command.begin: Copied (new)
2026/06/04 17:51:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/0e/545598b7e4889af2a8371edb39e427/.command.run: Copied (new)
2026/06/04 17:51:24 INFO  : Logs_Intermediates/FastqGeneration/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna_S11_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:51:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0a/7e3436250fcb44d61a50d4a291e070/.command.env: Copied (new)
2026/06/04 17:51:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0a/7e3436250fcb44d61a50d4a291e070/.command.err: Copied (new)
2026/06/04 17:51:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0a/7e3436250fcb44d61a50d4a291e070/.command.out: Copied (new)
2026/06/04 17:51:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0a/7e3436250fcb44d61a50d4a291e070/.command.run: Copied (new)
2026/06/04 17:51:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0a/7e3436250fcb44d61a50d4a291e070/.command.sh: Copied (new)
2026/06/04 17:51:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0a/7e3436250fcb44d61a50d4a291e070/.command.trace: Copied (new)
2026/06/04 17:51:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0a/7e3436250fcb44d61a50d4a291e070/.exitcode: Copied (new)
2026/06/04 17:51:25 INFO  : ica_logs/out/Logs_Intermediates/Gis/1173_M5U-T1-TDNA-01_HLNLMDRX7_1_dna/dragen_run_1780525115296_281959.log: Copied (new)
2026/06/04 17:51:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0a/7e3436250fcb44d61a50d4a291e070/.command.log: Copied (new)
2026/06/04 17:51:25 INFO  : ica_logs/out/Logs_Intermediates/Gis/1173_M5U-T1-TDNA-01_HLNLMDRX7_1_dna/dragen_syslog_1780525115289_281959.log: Copied (new)
2026/06/04 17:51:25 INFO  : Logs_Intermediates/Annotation/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:51:25 INFO  : Logs_Intermediates/Annotation/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_Annotated.json.gz: Copied (new)
2026/06/04 17:51:25 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/0e/c903313d2bee4712b6e9a1efb59178/SampleSheetReader/ReaderService-20260603195021.log: Copied (new)
2026/06/04 17:51:25 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/1b/b5682ba94047da35ba074628fb2641/.command.begin: Copied (new)
2026/06/04 17:51:25 INFO  : Logs_Intermediates/Annotation/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603223408.log: Copied (new)
2026/06/04 17:51:25 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/1b/b5682ba94047da35ba074628fb2641/.command.err: Copied (new)
2026/06/04 17:51:25 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/1b/b5682ba94047da35ba074628fb2641/.command.run: Copied (new)
2026/06/04 17:51:25 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/1b/b5682ba94047da35ba074628fb2641/.exitcode: Copied (new)
2026/06/04 17:51:25 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/1b/b5682ba94047da35ba074628fb2641/.command.trace: Copied (new)
2026/06/04 17:51:25 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/1b/b5682ba94047da35ba074628fb2641/.command.sh: Copied (new)
2026/06/04 17:51:25 INFO  : Logs_Intermediates/Contamination/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna_contamination.json: Copied (new)
2026/06/04 17:51:25 INFO  : Logs_Intermediates/Contamination/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/Spoiler-20260603230314.log: Copied (new)
2026/06/04 17:51:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:51:25 INFO  : Logs_Intermediates/FastqGeneration/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna_S4_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:51:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.bam.md5sum: Copied (new)
2026/06/04 17:51:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:51:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:51:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.bam: Copied (new)
2026/06/04 17:51:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/06/04 17:51:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/06/04 17:51:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.gff3: Copied (new)
2026/06/04 17:51:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/06/04 17:51:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:51:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/06/04 17:51:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/06/04 17:51:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/06/04 17:51:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/06/04 17:51:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.exon_hist.csv: Copied (new)
2026/06/04 17:51:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.bam.bai: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.fastq_list.csv: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.baf: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.insert-stats.tab: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_output.json: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_log.txt: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/FastqGeneration/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna_S24_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.pileup.txt: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.combined.counts.txt.gz: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:51:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions.txt: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/FastqGeneration/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna_S1_L002_R2_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:51:27 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
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2026/06/04 17:51:27 INFO  : Logs_Intermediates/CombinedVariantOutput/659_cYC-T1-TDNA-1_HLNLMDRX7_1/659_cYC-T1-TDNA-1_HLNLMDRX7_1_CombinedVariantOutput.tsv: Copied (new)
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2026/06/04 17:51:28 INFO  : Logs_Intermediates/DnaDragenCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780520889869_129600.log: Copied (new)
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2026/06/04 17:51:30 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
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2026/06/04 17:51:30 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:51:30 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:51:30 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:51:30 INFO  : Logs_Intermediates/Tmb/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz: Copied (new)
2026/06/04 17:51:30 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/06/04 17:51:30 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:51:30 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.insert-stats.tab: Copied (new)
2026/06/04 17:51:30 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/1b/b5682ba94047da35ba074628fb2641/.command.out: Copied (new)
2026/06/04 17:51:30 INFO  : Logs_Intermediates/FastqGeneration/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna_S24_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:51:30 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/06/04 17:51:30 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_output.json: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_log.txt: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.pileup.txt: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions.txt: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/06/04 17:51:31 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/06/04 17:51:32 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/06/04 17:51:32 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0b/a39548e14d9bcf933a6ec5f151fe37/.command.begin: Copied (new)
2026/06/04 17:51:32 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0b/a39548e14d9bcf933a6ec5f151fe37/.command.err: Copied (new)
2026/06/04 17:51:32 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0b/a39548e14d9bcf933a6ec5f151fe37/.command.log: Copied (new)
2026/06/04 17:51:32 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0b/a39548e14d9bcf933a6ec5f151fe37/.command.out: Copied (new)
2026/06/04 17:51:32 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780517370138_7324.log: Copied (new)
2026/06/04 17:51:32 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:51:32 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0b/a39548e14d9bcf933a6ec5f151fe37/.command.run: Copied (new)
2026/06/04 17:51:32 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0b/a39548e14d9bcf933a6ec5f151fe37/.command.sh: Copied (new)
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2026/06/04 17:51:32 INFO  : Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780517370122_7324.log: Copied (new)
2026/06/04 17:51:32 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0b/a39548e14d9bcf933a6ec5f151fe37/.exitcode: Copied (new)
2026/06/04 17:51:32 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0b/a39548e14d9bcf933a6ec5f151fe37/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:51:32 INFO  : Logs_Intermediates/MetricsOutput/659_cYC-T1-TDNA-1_HLNLMDRX7_1/659_cYC-T1-TDNA-1_HLNLMDRX7_1_MetricsOutput.tsv: Copied (new)
2026/06/04 17:51:32 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/18/93c5fd8375fd065af5d6235e73e6f0/.command.out: Copied (new)
2026/06/04 17:51:32 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:51:32 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:51:32 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/0e/e2e698209da5f857568643648d7a0a/.command.err: Copied (new)
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2026/06/04 17:51:32 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/0e/e2e698209da5f857568643648d7a0a/.command.begin: Copied (new)
2026/06/04 17:51:32 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/1173_M5U-T1-TDNA-01_HLNLMDRX7_1_dna/Nirvana-20260603223930.log: Copied (new)
2026/06/04 17:51:32 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/0e/e2e698209da5f857568643648d7a0a/.command.out: Copied (new)
2026/06/04 17:51:32 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/0e/e2e698209da5f857568643648d7a0a/.command.run: Copied (new)
2026/06/04 17:51:32 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/0e/e2e698209da5f857568643648d7a0a/.command.log: Copied (new)
2026/06/04 17:51:32 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780521053168_131791.log: Copied (new)
2026/06/04 17:51:32 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/0e/e2e698209da5f857568643648d7a0a/.command.sh: Copied (new)
2026/06/04 17:51:32 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/0e/e2e698209da5f857568643648d7a0a/.exitcode: Copied (new)
2026/06/04 17:51:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:51:32 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/0e/e2e698209da5f857568643648d7a0a/.command.trace: Copied (new)
2026/06/04 17:51:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:51:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:51:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:51:32 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/0e/e2e698209da5f857568643648d7a0a/Nirvana-20260603223929.log: Copied (new)
2026/06/04 17:51:32 INFO  : ica_logs/out/Logs_Intermediates/Annotation/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603223023.log: Copied (new)
2026/06/04 17:51:32 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780521053184_131791.log: Copied (new)
2026/06/04 17:51:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:51:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:51:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:51:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:51:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:51:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:51:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:51:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:51:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:51:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:51:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/06/04 17:51:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/06/04 17:51:32 INFO  : Logs_Intermediates/FastqGeneration/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna_S1_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:51:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780524138840_248235.log: Copied (new)
2026/06/04 17:51:32 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/a5/aa7e7531142f7d783564f916afb88d/.command.env: Copied (new)
2026/06/04 17:51:32 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/a5/aa7e7531142f7d783564f916afb88d/.command.err: Copied (new)
2026/06/04 17:51:32 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/a5/aa7e7531142f7d783564f916afb88d/.command.begin: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/a5/aa7e7531142f7d783564f916afb88d/.command.out: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/a5/aa7e7531142f7d783564f916afb88d/.command.log: Copied (new)
2026/06/04 17:51:33 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780524138832_248235.log: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/a5/aa7e7531142f7d783564f916afb88d/.command.sh: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/a5/aa7e7531142f7d783564f916afb88d/.command.run: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/a5/aa7e7531142f7d783564f916afb88d/.exitcode: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/1b/b5682ba94047da35ba074628fb2641/.command.log: Copied (new)
2026/06/04 17:51:33 INFO  : Logs_Intermediates/nextflow_work_logs/0e/ccbaaeba9e51a3857866c060f7595f/.command.err: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/a5/aa7e7531142f7d783564f916afb88d/.command.trace: Copied (new)
2026/06/04 17:51:33 INFO  : Logs_Intermediates/nextflow_work_logs/0e/ccbaaeba9e51a3857866c060f7595f/.command.out: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/out/Logs_Intermediates/DnaCoverageReports/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/06/04 17:51:33 INFO  : Logs_Intermediates/nextflow_work_logs/0e/ccbaaeba9e51a3857866c060f7595f/.command.log: Copied (new)
2026/06/04 17:51:33 INFO  : Logs_Intermediates/nextflow_work_logs/0e/ccbaaeba9e51a3857866c060f7595f/.command.run: Copied (new)
2026/06/04 17:51:33 INFO  : Logs_Intermediates/nextflow_work_logs/0e/ccbaaeba9e51a3857866c060f7595f/.command.sh: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0c/7441b567f787b8a044406ce3312e50/.command.begin: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/out/Logs_Intermediates/Contamination/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/Spoiler-20260603225601.log: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0c/7441b567f787b8a044406ce3312e50/.command.err: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/03/c4e0fa9d4c06e1456969cbac6474fa/work/a9/f5b78edb3619e2e162aea32bbcd8f5/SampleSheetValidation/ValidationService.log-20260603193431.log: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0c/7441b567f787b8a044406ce3312e50/.command.run: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0c/7441b567f787b8a044406ce3312e50/.command.log: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0c/7441b567f787b8a044406ce3312e50/.command.sh: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0c/7441b567f787b8a044406ce3312e50/.command.out: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0c/7441b567f787b8a044406ce3312e50/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:51:33 INFO  : Logs_Intermediates/LrCalculator/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
2026/06/04 17:51:33 INFO  : Logs_Intermediates/DnaCoverageReports/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.exon_cov_report.tsv: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/79/8d5c665b911f77050b1499f8dcedbb/.command.begin: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/79/8d5c665b911f77050b1499f8dcedbb/.command.err: Copied (new)
2026/06/04 17:51:33 INFO  : Logs_Intermediates/DnaCoverageReports/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.gene_cov_report.tsv: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0c/7441b567f787b8a044406ce3312e50/.command.trace: Copied (new)
2026/06/04 17:51:33 INFO  : Logs_Intermediates/LrCalculator/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/LrCalculator-20260603224956.log: Copied (new)
2026/06/04 17:51:33 INFO  : Logs_Intermediates/DnaCoverageReports/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/79/8d5c665b911f77050b1499f8dcedbb/.command.log: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/79/8d5c665b911f77050b1499f8dcedbb/.command.out: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0c/7441b567f787b8a044406ce3312e50/.exitcode: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/79/8d5c665b911f77050b1499f8dcedbb/.command.trace: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/1d/5a6429124a505d197920f743a44231/.command.begin: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/79/8d5c665b911f77050b1499f8dcedbb/.exitcode: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/1d/5a6429124a505d197920f743a44231/.command.err: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/1d/5a6429124a505d197920f743a44231/.command.log: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/79/8d5c665b911f77050b1499f8dcedbb/.command.sh: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/79/8d5c665b911f77050b1499f8dcedbb/.command.run: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/1d/5a6429124a505d197920f743a44231/.command.out: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/1d/5a6429124a505d197920f743a44231/.command.sh: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/1d/5a6429124a505d197920f743a44231/.command.run: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/1d/5a6429124a505d197920f743a44231/.command.trace: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/1d/5a6429124a505d197920f743a44231/.exitcode: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0a/fed44bd1d52f92585d49ac10bf3384/.command.begin: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0a/fed44bd1d52f92585d49ac10bf3384/.command.out: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0a/fed44bd1d52f92585d49ac10bf3384/.command.err: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0a/fed44bd1d52f92585d49ac10bf3384/.command.run: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0a/fed44bd1d52f92585d49ac10bf3384/.command.trace: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0a/fed44bd1d52f92585d49ac10bf3384/.command.log: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0a/fed44bd1d52f92585d49ac10bf3384/.command.sh: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0a/fed44bd1d52f92585d49ac10bf3384/.exitcode: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0a/fed44bd1d52f92585d49ac10bf3384/Nirvana-20260603202114.log: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/out/Logs_Intermediates/Gis/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780524885180_270420.log: Copied (new)
2026/06/04 17:51:33 INFO  : Logs_Intermediates/LrAnnotation/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna_DNAExonCNV_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/out/Logs_Intermediates/Gis/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780524885173_270420.log: Copied (new)
2026/06/04 17:51:33 INFO  : Logs_Intermediates/LrAnnotation/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna_DNAExonCNV_Annotated.json.gz: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/0a/539f11c1992d4ce31bdac07ddea559/DnaDragenExonCnvCaller/dragen_run_1780523306310_220466.log: Copied (new)
2026/06/04 17:51:33 INFO  : Logs_Intermediates/Annotation/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603224539.log: Copied (new)
2026/06/04 17:51:33 INFO  : Logs_Intermediates/Annotation/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:51:33 INFO  : Logs_Intermediates/LrAnnotation/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603223932.log: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/0a/539f11c1992d4ce31bdac07ddea559/DnaDragenExonCnvCaller/dragen_syslog_1780523306302_220466.log: Copied (new)
2026/06/04 17:51:33 INFO  : Logs_Intermediates/CombinedVariantOutput/659_cZs-T1-TDNA-1_HLNLMDRX7_1/659_cZs-T1-TDNA-1_HLNLMDRX7_1_CombinedVariantOutput.tsv: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/60/703917ba43e5c1694404c2190747e5/SampleSheetReader/ReaderService-20260603200122.log: Copied (new)
2026/06/04 17:51:33 INFO  : Logs_Intermediates/Contamination/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna_contamination.json: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/05/9d3321e845f3a485143aa76b4a6fa0/DnaDragenExonCnvCaller/dragen_syslog_1780524026451_241937.log: Copied (new)
2026/06/04 17:51:33 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/05/9d3321e845f3a485143aa76b4a6fa0/DnaDragenExonCnvCaller/dragen_run_1780524026459_241937.log: Copied (new)
2026/06/04 17:51:34 INFO  : Logs_Intermediates/Contamination/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/Spoiler-20260603225241.log: Copied (new)
2026/06/04 17:51:34 INFO  : ica_logs/out/Logs_Intermediates/RunQc/RunQc-20260603195013.log: Copied (new)
2026/06/04 17:51:34 INFO  : Logs_Intermediates/Gis/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna.abcn_genes.tsv: Copied (new)
2026/06/04 17:51:34 INFO  : Logs_Intermediates/Gis/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
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2026/06/04 17:51:36 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
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2026/06/04 17:51:36 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780525714319_301102.log: Copied (new)
2026/06/04 17:51:36 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:51:36 INFO  : Logs_Intermediates/nextflow_work_logs/0e/e2e698209da5f857568643648d7a0a/.command.err: Copied (new)
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2026/06/04 17:51:36 INFO  : Logs_Intermediates/LrCalculator/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
2026/06/04 17:51:36 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/20/d99f57ced35473fc9d12320598149f/.command.begin: Copied (new)
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2026/06/04 17:51:36 INFO  : Logs_Intermediates/LrCalculator/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/LrCalculator-20260603223928.log: Copied (new)
2026/06/04 17:51:36 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/20/d99f57ced35473fc9d12320598149f/.command.err: Copied (new)
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2026/06/04 17:51:36 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/20/d99f57ced35473fc9d12320598149f/.exitcode: Copied (new)
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2026/06/04 17:51:36 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/20/d99f57ced35473fc9d12320598149f/.command.sh: Copied (new)
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2026/06/04 17:51:36 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0e/ccbaaeba9e51a3857866c060f7595f/.command.sh: Copied (new)
2026/06/04 17:51:36 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0e/ccbaaeba9e51a3857866c060f7595f/.exitcode: Copied (new)
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2026/06/04 17:51:36 INFO  : ica_logs/out/Logs_Intermediates/Annotation/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603224210.log: Copied (new)
2026/06/04 17:51:36 INFO  : ica_logs/out/Logs_Intermediates/Contamination/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/Spoiler-20260603224722.log: Copied (new)
2026/06/04 17:51:37 INFO  : ica_logs/out/Logs_Intermediates/DnaCoverageReports/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/06/04 17:51:37 INFO  : Logs_Intermediates/LrAnnotation/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna_DNAExonCNV_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:51:37 INFO  : Logs_Intermediates/DnaCoverageReports/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/gen_coverage_reports.log: Copied (new)
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2026/06/04 17:51:37 INFO  : Logs_Intermediates/Contamination/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/Spoiler-20260603225245.log: Copied (new)
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2026/06/04 17:51:37 INFO  : Logs_Intermediates/FastqGeneration/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna_S8_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:51:37 INFO  : Logs_Intermediates/CombinedVariantOutput/659_ciq-T1-TDNA-1_HLNLMDRX7_1/659_ciq-T1-TDNA-1_HLNLMDRX7_1_CombinedVariantOutput.tsv: Copied (new)
2026/06/04 17:51:37 INFO  : Logs_Intermediates/Gis/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.abcn_genes.tsv: Copied (new)
2026/06/04 17:51:37 INFO  : Logs_Intermediates/Annotation/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603223643.log: Copied (new)
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2026/06/04 17:51:37 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
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2026/06/04 17:51:37 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/06/04 17:51:37 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/06/04 17:51:37 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna.combined.counts.txt.gz: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.exon_hist.csv: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.fastq_list.csv: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.insert-stats.tab: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/FastqGeneration/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna_S28_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_log.txt: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_output.json: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.pileup.txt: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:51:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/06/04 17:51:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/06/04 17:51:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.bam.bai: Copied (new)
2026/06/04 17:51:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/06/04 17:51:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:51:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/06/04 17:51:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:51:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/06/04 17:51:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/06/04 17:51:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/06/04 17:51:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/06/04 17:51:39 INFO  : Logs_Intermediates/FastqGeneration/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna_S24_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:51:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/06/04 17:51:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/06/04 17:51:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/06/04 17:51:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/06/04 17:51:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/06/04 17:51:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:51:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:51:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/06/04 17:51:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:51:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/06/04 17:51:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/06/04 17:51:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/06/04 17:51:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/06/04 17:51:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions.txt: Copied (new)
2026/06/04 17:51:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780519194620_79382.log: Copied (new)
2026/06/04 17:51:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780519194641_79382.log: Copied (new)
2026/06/04 17:51:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:51:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
2026/06/04 17:51:40 INFO  : Logs_Intermediates/FastqGeneration/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna_S4_L002_R2_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:51:41 INFO  : Logs_Intermediates/FastqGeneration/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna_S24_L002_R2_001.fastq.gz: Multi-thread Copied (new)
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2026/06/04 17:51:49 INFO  : ica_logs/out/Logs_Intermediates/SampleAnalysisResults/659_bsr-T1-TDNA-1_HLNLMDRX7_1_SARJeantLog-20260603230921.log: Copied (new)
2026/06/04 17:51:49 INFO  : Logs_Intermediates/MetricsOutput/659_ciq-T1-TDNA-1_HLNLMDRX7_1/659_ciq-T1-TDNA-1_HLNLMDRX7_1_MetricsOutput.tsv: Copied (new)
2026/06/04 17:51:49 INFO  : Logs_Intermediates/nextflow_work_logs/14/380cd1a369216f2724a682a8f1f2d3/.command.err: Copied (new)
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2026/06/04 17:51:50 INFO  : Logs_Intermediates/nextflow_work_logs/10/e74dd3d48d65b46dfce1b60fc1c506/.command.err: Copied (new)
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2026/06/04 17:51:50 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/16/1ad92224d09af2583553a15238af92/.command.err: Copied (new)
2026/06/04 17:51:50 INFO  : ica_logs/out/Logs_Intermediates/SampleAnalysisResults/659_dyd-T1-TDNA-1_HLNLMDRX7_1_SARJeantLog-20260603230952.log: Copied (new)
2026/06/04 17:51:50 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/16/1ad92224d09af2583553a15238af92/.command.log: Copied (new)
2026/06/04 17:51:50 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/16/1ad92224d09af2583553a15238af92/.command.out: Copied (new)
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2026/06/04 17:51:50 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/16/1ad92224d09af2583553a15238af92/.command.trace: Copied (new)
2026/06/04 17:51:50 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/16/1ad92224d09af2583553a15238af92/.exitcode: Copied (new)
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2026/06/04 17:51:52 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0d/3e1530cfc461d86e531194ed9a2430/.command.begin: Copied (new)
2026/06/04 17:51:52 INFO  : 
Transferred:   	  159.081 GiB / 409.909 GiB, 39%, 1.450 GiB/s, ETA 2m53s
Transferred:         4115 / 14211, 29%
Elapsed time:       2m0.0s
Transferring:
 * Logs_Intermediates/Dna…01_HLNLMDRX7_1_dna.bam: 72% /4.461Gi, 28.270Mi/s, 44s
 * Logs_Intermediates/Dna…01_HLNLMDRX7_1_dna.bam: 65% /4.128Gi, 25.572Mi/s, 56s
 * Results/659_bea-T1-TDN…dna.hard-filtered.gvcf: 90% /139.410Mi, 1.340Mi/s, 10s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 60% /4.929Gi, 31.436Mi/s, 1m3s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 55% /5.160Gi, 28.376Mi/s, 1m22s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 53% /4.711Gi, 28.664Mi/s, 1m17s
 * Logs_Intermediates/Fas…8_L001_R2_001.fastq.gz:100% /2.340Gi, 19.473Mi/s, 0s
 * Logs_Intermediates/Fas…8_L002_R2_001.fastq.gz: 98% /2.326Gi, 30.117Mi/s, 1s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 50% /4.999Gi, 28.827Mi/s, 1m27s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 44% /5.417Gi, 28.700Mi/s, 1m46s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 57% /3.966Gi, 31.476Mi/s, 54s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 35% /4.751Gi, 28.093Mi/s, 1m51s
 * Logs_Intermediates/Fas…3_L001_R1_001.fastq.gz: 87% /2.227Gi, 31.508Mi/s, 9s
 * Logs_Intermediates/Fas…3_L001_R2_001.fastq.gz: 79% /2.205Gi, 32.936Mi/s, 14s
 * Logs_Intermediates/Fas…3_L002_R1_001.fastq.gz: 85% /2.236Gi, 36.228Mi/s, 9s
 * Logs_Intermediates/Fas…3_L002_R2_001.fastq.gz: 89% /2.207Gi, 33.199Mi/s, 6s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 35% /5.229Gi, 27.744Mi/s, 2m3s
 * Logs_Intermediates/Fas…2_L001_R1_001.fastq.gz: 67% /2.080Gi, 26.746Mi/s, 25s
 * Logs_Intermediates/Fas…2_L001_R2_001.fastq.gz: 76% /2.080Gi, 32.644Mi/s, 15s
 * Logs_Intermediates/Fas…2_L002_R1_001.fastq.gz: 75% /2.065Gi, 29.593Mi/s, 17s
 * Logs_Intermediates/Fas…2_L002_R2_001.fastq.gz: 69% /2.063Gi, 27.474Mi/s, 23s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 30% /4.573Gi, 27.599Mi/s, 1m58s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 30% /4.391Gi, 30.655Mi/s, 1m41s
 * Logs_Intermediates/Fas…9_L001_R1_001.fastq.gz: 51% /1.884Gi, 23.389Mi/s, 40s
 * Logs_Intermediates/Fas…9_L001_R2_001.fastq.gz: 65% /1.944Gi, 27.598Mi/s, 24s
 * Logs_Intermediates/Fas…9_L002_R1_001.fastq.gz: 69% /1.886Gi, 30.312Mi/s, 19s
 * Logs_Intermediates/Fas…9_L002_R2_001.fastq.gz: 62% /1.950Gi, 30.762Mi/s, 24s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 23% /5.364Gi, 33.140Mi/s, 2m6s
 * Logs_Intermediates/Fas…0_L001_R1_001.fastq.gz: 72% /1.640Gi, 32.666Mi/s, 14s
 * Logs_Intermediates/Fas…0_L001_R2_001.fastq.gz: 65% /1.665Gi, 28.573Mi/s, 20s
 * Logs_Intermediates/Fas…0_L002_R1_001.fastq.gz: 62% /1.651Gi, 26.417Mi/s, 24s
 * Logs_Intermediates/Fas…0_L002_R2_001.fastq.gz: 61% /1.676Gi, 26.913Mi/s, 24s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 16% /4.924Gi, 20.538Mi/s, 3m24s
 * Logs_Intermediates/Fas…6_L001_R1_001.fastq.gz: 52% /1.677Gi, 27.659Mi/s, 29s
 * Logs_Intermediates/Fas…6_L001_R2_001.fastq.gz: 55% /1.786Gi, 32.615Mi/s, 24s
 * Logs_Intermediates/Fas…6_L002_R1_001.fastq.gz: 47% /1.695Gi, 27.340Mi/s, 33s
 * Logs_Intermediates/Fas…6_L002_R2_001.fastq.gz: 41% /1.810Gi, 26.318Mi/s, 41s
 * Logs_Intermediates/Fas…3_L001_R1_001.fastq.gz: 36% /1.617Gi, 26.899Mi/s, 38s
 * Logs_Intermediates/Fas…3_L001_R2_001.fastq.gz: 35% /1.651Gi, 25.252Mi/s, 42s
 * Logs_Intermediates/Fas…3_L002_R1_001.fastq.gz: 35% /1.651Gi, 25.831Mi/s, 41s
 * Logs_Intermediates/Fas…3_L002_R2_001.fastq.gz: 33% /1.685Gi, 24.434Mi/s, 47s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 12% /5.095Gi, 29.214Mi/s, 2m36s
 * Logs_Intermediates/Fas…5_L001_R1_001.fastq.gz: 24% /1.794Gi, 26.490Mi/s, 52s
 * Logs_Intermediates/Fas…5_L001_R2_001.fastq.gz: 29% /1.812Gi, 32.125Mi/s, 40s
 * Logs_Intermediates/Fas…5_L002_R1_001.fastq.gz: 25% /1.809Gi, 28.125Mi/s, 48s
 * Logs_Intermediates/Fas…5_L002_R2_001.fastq.gz: 23% /1.828Gi, 25.557Mi/s, 55s
 * ica_logs/work/67/bf96a…Log-20260603230943.log: 74% /67.037Mi, 2.890Mi/s, 5s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam:  9% /4.297Gi, 29.714Mi/s, 2m14s
 * ica_logs/out/Logs_Inte…Log-20260603230714.log: 43% /66.872Mi, 2.333Mi/s, 16s
 * ica_logs/out/Logs_Inte…Log-20260603230610.log: 71% /64.211Mi, 3.833Mi/s, 4s
 * ica_logs/out/Logs_Inte…Log-20260603230610.log: 43% /64.380Mi, 3.571Mi/s, 10s
 * ica_logs/out/Logs_Inte…Log-20260603230610.log: 78% /69.886Mi, 9.399Mi/s, 1s
 * ica_logs/out/Logs_Inte…Log-20260603230909.log: 45% /79.941Mi, 8.499Mi/s, 5s
 * ica_logs/out/Logs_Inte…Log-20260603230958.log: 64% /71.049Mi, 11.249Mi/s, 2s
 * ica_logs/out/Logs_Inte…Log-20260603230744.log: 44% /74.678Mi, 8.249Mi/s, 5s
 * ica_logs/out/Logs_Inte…Log-20260603230818.log: 74% /69.676Mi, 12.665Mi/s, 1s
 * ica_logs/out/Logs_Inte…Log-20260603230954.log: 83% /70.273Mi, 16.332Mi/s, 0s
 * ica_logs/out/Logs_Inte…Log-20260603230746.log: 51% /71.731Mi, 12.332Mi/s, 2s
 * ica_logs/work/67/bf96a…Log-20260603230849.log: 38% /70.099Mi, 10.498Mi/s, 4s
 * Logs_Intermediates/Fas…5_L001_R1_001.fastq.gz:  0% /1.956Gi, 0/s, -
 * Logs_Intermediates/Fas…5_L001_R2_001.fastq.gz:  0% /2.014Gi, 0/s, -
 * Logs_Intermediates/Fas…5_L002_R1_001.fastq.gz:  0% /1.970Gi, 0/s, -
 * Logs_Intermediates/Fas…5_L002_R2_001.fastq.gz:  0% /2.031Gi, 0/s, -
 * ica_logs/work/c9/18d5f…4ed9a2430/.command.err: transferring

2026/06/04 17:51:52 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0d/3e1530cfc461d86e531194ed9a2430/.command.err: Copied (new)
2026/06/04 17:51:52 INFO  : Logs_Intermediates/FastqGeneration/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna_S8_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:51:52 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0d/3e1530cfc461d86e531194ed9a2430/.command.log: Copied (new)
2026/06/04 17:51:52 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0d/3e1530cfc461d86e531194ed9a2430/.command.out: Copied (new)
2026/06/04 17:51:52 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0d/3e1530cfc461d86e531194ed9a2430/.command.run: Copied (new)
2026/06/04 17:51:52 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0d/3e1530cfc461d86e531194ed9a2430/.command.sh: Copied (new)
2026/06/04 17:51:52 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0d/3e1530cfc461d86e531194ed9a2430/.exitcode: Copied (new)
2026/06/04 17:51:52 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0d/3e1530cfc461d86e531194ed9a2430/.command.trace: Copied (new)
2026/06/04 17:51:52 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/LrCalculator-20260603223441.log: Copied (new)
2026/06/04 17:51:53 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780525179513_278956.log: Copied (new)
2026/06/04 17:51:53 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780525179505_278956.log: Copied (new)
2026/06/04 17:51:53 INFO  : Logs_Intermediates/Tmb/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:51:53 INFO  : ica_logs/out/Logs_Intermediates/SampleAnalysisResults/659_ez6-T1-TDNA-1_HLNLMDRX7_1_SARJeantLog-20260603230954.log: Copied (new)
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2026/06/04 17:51:53 INFO  : Logs_Intermediates/FastqGeneration/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna_S8_L002_R2_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:51:54 INFO  : Logs_Intermediates/Tmb/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780526362116_326003.log: Copied (new)
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2026/06/04 17:51:54 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
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2026/06/04 17:51:56 INFO  : Logs_Intermediates/DnaDragenCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/06/04 17:51:56 INFO  : Logs_Intermediates/DnaDragenCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/06/04 17:51:56 INFO  : Logs_Intermediates/DnaDragenCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:51:56 INFO  : Logs_Intermediates/DnaDragenCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/06/04 17:51:56 INFO  : Logs_Intermediates/DnaDragenCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/06/04 17:51:56 INFO  : Logs_Intermediates/DnaDragenCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:51:56 INFO  : Logs_Intermediates/DnaDragenCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
2026/06/04 17:51:56 INFO  : Logs_Intermediates/DnaDragenCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:51:56 INFO  : Logs_Intermediates/DnaDragenCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/06/04 17:51:56 INFO  : Logs_Intermediates/DnaDragenCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/06/04 17:51:57 INFO  : Logs_Intermediates/DnaDragenCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/06/04 17:51:57 INFO  : Logs_Intermediates/DnaDragenCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/06/04 17:51:57 INFO  : Logs_Intermediates/DnaDragenCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/06/04 17:51:57 INFO  : Logs_Intermediates/DnaDragenCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/06/04 17:51:57 INFO  : Logs_Intermediates/DnaDragenCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/06/04 17:51:57 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0f/c445eab524660993f1224ecd3bb05e/.command.begin: Copied (new)
2026/06/04 17:51:57 INFO  : Logs_Intermediates/DnaDragenCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/06/04 17:51:57 INFO  : Logs_Intermediates/DnaDragenCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780521460950_143474.log: Copied (new)
2026/06/04 17:51:57 INFO  : Logs_Intermediates/DnaDragenCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:51:57 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0f/c445eab524660993f1224ecd3bb05e/.command.err: Copied (new)
2026/06/04 17:51:57 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0f/c445eab524660993f1224ecd3bb05e/.command.log: Copied (new)
2026/06/04 17:51:57 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0f/c445eab524660993f1224ecd3bb05e/.command.run: Copied (new)
2026/06/04 17:51:57 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0f/c445eab524660993f1224ecd3bb05e/.command.out: Copied (new)
2026/06/04 17:51:57 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0f/c445eab524660993f1224ecd3bb05e/.exitcode: Copied (new)
2026/06/04 17:51:57 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0f/c445eab524660993f1224ecd3bb05e/.command.sh: Copied (new)
2026/06/04 17:51:57 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/0f/c445eab524660993f1224ecd3bb05e/.command.trace: Copied (new)
2026/06/04 17:51:57 INFO  : Logs_Intermediates/DnaDragenCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780521460966_143474.log: Copied (new)
2026/06/04 17:51:57 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0b/a39548e14d9bcf933a6ec5f151fe37/Contamination/Spoiler-20260603224721.log: Copied (new)
2026/06/04 17:51:57 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:51:57 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:51:57 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:51:57 INFO  : ica_logs/out/Logs_Intermediates/Annotation/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603223611.log: Copied (new)
2026/06/04 17:51:57 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:51:57 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:51:57 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:51:57 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:51:57 INFO  : Logs_Intermediates/DnaDragenCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions.txt: Copied (new)
2026/06/04 17:51:57 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:51:57 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:51:57 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:51:57 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:51:57 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:51:57 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:51:57 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:51:57 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780523359819_217271.log: Copied (new)
2026/06/04 17:51:58 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/c5/0b7999c77fc50b5b3c10b1379310b7/.command.begin: Copied (new)
2026/06/04 17:51:58 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/c5/0b7999c77fc50b5b3c10b1379310b7/.command.log: Copied (new)
2026/06/04 17:51:58 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/c5/0b7999c77fc50b5b3c10b1379310b7/.command.err: Copied (new)
2026/06/04 17:51:58 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/06/04 17:51:58 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/c5/0b7999c77fc50b5b3c10b1379310b7/.command.out: Copied (new)
2026/06/04 17:51:58 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/06/04 17:51:58 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780523359812_217271.log: Copied (new)
2026/06/04 17:51:58 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/c5/0b7999c77fc50b5b3c10b1379310b7/.command.sh: Copied (new)
2026/06/04 17:51:58 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/c5/0b7999c77fc50b5b3c10b1379310b7/.command.trace: Copied (new)
2026/06/04 17:51:58 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/c5/0b7999c77fc50b5b3c10b1379310b7/.command.run: Copied (new)
2026/06/04 17:51:58 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/c5/0b7999c77fc50b5b3c10b1379310b7/.exitcode: Copied (new)
2026/06/04 17:51:58 INFO  : ica_logs/bpe1-38386f8c-9796-4ea7-9fb5-4ea61fca1c4c-1pre/9/stderr.grtnk.log: Copied (new)
2026/06/04 17:51:58 INFO  : Logs_Intermediates/DnaCoverageReports/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/06/04 17:51:58 INFO  : Logs_Intermediates/DnaCoverageReports/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.gene_cov_report.tsv: Copied (new)
2026/06/04 17:51:58 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/21/52931c42698052f73d5489b5355205/.command.begin: Copied (new)
2026/06/04 17:51:58 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/21/52931c42698052f73d5489b5355205/.command.err: Copied (new)
2026/06/04 17:51:58 INFO  : ica_logs/bpe1-38386f8c-9796-4ea7-9fb5-4ea61fca1c4c-1pre/9/stdout.grtnk.log: Copied (new)
2026/06/04 17:51:58 INFO  : Logs_Intermediates/DnaCoverageReports/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.exon_cov_report.tsv: Copied (new)
2026/06/04 17:51:58 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/21/52931c42698052f73d5489b5355205/.exitcode: Copied (new)
2026/06/04 17:51:58 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/21/52931c42698052f73d5489b5355205/.command.sh: Copied (new)
2026/06/04 17:51:58 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/21/52931c42698052f73d5489b5355205/.command.run: Copied (new)
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2026/06/04 17:51:58 INFO  : Logs_Intermediates/nextflow_work_logs/10/4f3506bcbad2f708de80820a4eb52e/.command.err: Copied (new)
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2026/06/04 17:51:58 INFO  : Logs_Intermediates/nextflow_work_logs/10/4f3506bcbad2f708de80820a4eb52e/.command.log: Copied (new)
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2026/06/04 17:51:58 INFO  : Logs_Intermediates/nextflow_work_logs/10/4f3506bcbad2f708de80820a4eb52e/.command.run: Copied (new)
2026/06/04 17:51:58 INFO  : Logs_Intermediates/Annotation/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603223925.log: Copied (new)
2026/06/04 17:51:58 INFO  : ica_logs/out/Logs_Intermediates/Contamination/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/Spoiler-20260603224721.log: Copied (new)
2026/06/04 17:51:58 INFO  : ica_logs/out/Logs_Intermediates/SampleAnalysisResults/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_SARJeantLog-20260603230610.log: Copied (new)
2026/06/04 17:51:58 INFO  : Logs_Intermediates/Contamination/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna_contamination.json: Copied (new)
2026/06/04 17:51:58 INFO  : Logs_Intermediates/LrCalculator/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/LrCalculator-20260603223931.log: Copied (new)
2026/06/04 17:51:58 INFO  : Logs_Intermediates/LrCalculator/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
2026/06/04 17:51:58 INFO  : Logs_Intermediates/Annotation/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:51:59 INFO  : Logs_Intermediates/Contamination/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/Spoiler-20260603225600.log: Copied (new)
2026/06/04 17:51:59 INFO  : ica_logs/out/Logs_Intermediates/Gis/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780523529466_224228.log: Copied (new)
2026/06/04 17:51:59 INFO  : Logs_Intermediates/LrAnnotation/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna_DNAExonCNV_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:51:59 INFO  : Logs_Intermediates/LrAnnotation/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna_DNAExonCNV_Annotated.json.gz: Copied (new)
2026/06/04 17:51:59 INFO  : ica_logs/out/Logs_Intermediates/Gis/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780523529460_224228.log: Copied (new)
2026/06/04 17:51:59 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/91/257dc48527147294bcb01ee9662bde/.command.begin: Copied (new)
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2026/06/04 17:51:59 INFO  : Logs_Intermediates/LrAnnotation/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603224959.log: Copied (new)
2026/06/04 17:51:59 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/91/257dc48527147294bcb01ee9662bde/.command.env: Copied (new)
2026/06/04 17:51:59 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/91/257dc48527147294bcb01ee9662bde/.command.err: Copied (new)
2026/06/04 17:51:59 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/91/257dc48527147294bcb01ee9662bde/.command.out: Copied (new)
2026/06/04 17:51:59 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/91/257dc48527147294bcb01ee9662bde/.command.run: Copied (new)
2026/06/04 17:51:59 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/91/257dc48527147294bcb01ee9662bde/.command.log: Copied (new)
2026/06/04 17:51:59 INFO  : Logs_Intermediates/CombinedVariantOutput/659_cqB-T1-TDNA-1_HLNLMDRX7_1/659_cqB-T1-TDNA-1_HLNLMDRX7_1_CombinedVariantOutput.tsv: Copied (new)
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2026/06/04 17:52:01 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0f/9a333399423df9aa32bf55c3d3b75e/.command.err: Copied (new)
2026/06/04 17:52:01 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/15/08f170eda63fdc0461a33d63df66d1/DnaDragenExonCnvCaller/dragen_run_1780525714319_301102.log: Copied (new)
2026/06/04 17:52:01 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/14/380cd1a369216f2724a682a8f1f2d3/DnaDragenCaller/dragen_run_1780519770480_97408.log: Copied (new)
2026/06/04 17:52:01 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780524545142_257268.log: Copied (new)
2026/06/04 17:52:01 INFO  : ica_logs/out/Logs_Intermediates/Annotation/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603224956.log: Copied (new)
2026/06/04 17:52:01 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:52:01 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:52:01 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:52:01 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/15/08f170eda63fdc0461a33d63df66d1/DnaDragenExonCnvCaller/dragen_syslog_1780525714311_301102.log: Copied (new)
2026/06/04 17:52:01 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:52:01 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:52:01 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:52:01 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:52:01 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:52:01 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:52:01 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:52:01 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:52:01 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/06/04 17:52:01 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:52:01 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:52:01 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/21/97092e8e6c5d22f5fb0b69ed3b91df/.command.begin: Copied (new)
2026/06/04 17:52:01 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/21/97092e8e6c5d22f5fb0b69ed3b91df/.command.err: Copied (new)
2026/06/04 17:52:01 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780524745075_264529.log: Copied (new)
2026/06/04 17:52:01 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780524745067_264529.log: Copied (new)
2026/06/04 17:52:01 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/21/97092e8e6c5d22f5fb0b69ed3b91df/.command.log: Copied (new)
2026/06/04 17:52:01 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/06/04 17:52:01 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/21/97092e8e6c5d22f5fb0b69ed3b91df/.command.out: Copied (new)
2026/06/04 17:52:01 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/21/97092e8e6c5d22f5fb0b69ed3b91df/.command.run: Copied (new)
2026/06/04 17:52:01 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:52:01 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/21/97092e8e6c5d22f5fb0b69ed3b91df/.exitcode: Copied (new)
2026/06/04 17:52:01 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/21/97092e8e6c5d22f5fb0b69ed3b91df/.command.sh: Copied (new)
2026/06/04 17:52:01 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/21/97092e8e6c5d22f5fb0b69ed3b91df/.command.trace: Copied (new)
2026/06/04 17:52:01 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0c/380272ce6e4f25bb05990cdba2bde4/Tmb/dragen_run_1780525935211_309039.log: Copied (new)
2026/06/04 17:52:01 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0c/380272ce6e4f25bb05990cdba2bde4/Tmb/dragen_syslog_1780525935203_309039.log: Copied (new)
2026/06/04 17:52:01 INFO  : Logs_Intermediates/LrCalculator/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/LrCalculator-20260603224245.log: Copied (new)
2026/06/04 17:52:01 INFO  : Logs_Intermediates/LrCalculator/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
2026/06/04 17:52:01 INFO  : Logs_Intermediates/DnaCoverageReports/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.gene_cov_report.tsv: Copied (new)
2026/06/04 17:52:01 INFO  : Logs_Intermediates/DnaCoverageReports/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/06/04 17:52:02 INFO  : Logs_Intermediates/DnaCoverageReports/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.exon_cov_report.tsv: Copied (new)
2026/06/04 17:52:02 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/27/94f00f73744d6112752cb6a8a7101a/.command.begin: Copied (new)
2026/06/04 17:52:02 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/27/94f00f73744d6112752cb6a8a7101a/.command.err: Copied (new)
2026/06/04 17:52:02 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/27/94f00f73744d6112752cb6a8a7101a/.command.log: Copied (new)
2026/06/04 17:52:02 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/12/daaa2d0833edf1c5896d8fd0e8d80d/LrCalculator/LrCalculator-20260603225001.log: Copied (new)
2026/06/04 17:52:02 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/27/94f00f73744d6112752cb6a8a7101a/.command.out: Copied (new)
2026/06/04 17:52:02 INFO  : Results/659_bea-T1-TDNA-1_HLNLMDRX7_1/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf: Copied (new)
2026/06/04 17:52:02 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/27/94f00f73744d6112752cb6a8a7101a/.command.run: Copied (new)
2026/06/04 17:52:02 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/27/94f00f73744d6112752cb6a8a7101a/.command.sh: Copied (new)
2026/06/04 17:52:02 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/27/94f00f73744d6112752cb6a8a7101a/.command.trace: Copied (new)
2026/06/04 17:52:02 INFO  : Logs_Intermediates/Annotation/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:52:02 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/27/94f00f73744d6112752cb6a8a7101a/.exitcode: Copied (new)
2026/06/04 17:52:02 INFO  : ica_logs/out/Logs_Intermediates/Contamination/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/Spoiler-20260603225604.log: Copied (new)
2026/06/04 17:52:02 INFO  : ica_logs/out/Logs_Intermediates/DnaCoverageReports/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/06/04 17:52:02 INFO  : ica_logs/out/Logs_Intermediates/Gis/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780525793533_300291.log: Copied (new)
2026/06/04 17:52:02 INFO  : ica_logs/out/Logs_Intermediates/Gis/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780525793527_300291.log: Copied (new)
2026/06/04 17:52:02 INFO  : Logs_Intermediates/Annotation/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603223934.log: Copied (new)
2026/06/04 17:52:02 INFO  : Logs_Intermediates/LrAnnotation/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna_DNAExonCNV_Annotated.json.gz: Copied (new)
2026/06/04 17:52:02 INFO  : Logs_Intermediates/LrAnnotation/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna_DNAExonCNV_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:52:02 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/b2/a69245e71888f8d06781673f111cb1/.command.begin: Copied (new)
2026/06/04 17:52:02 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/b2/a69245e71888f8d06781673f111cb1/.command.env: Copied (new)
2026/06/04 17:52:02 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/b2/a69245e71888f8d06781673f111cb1/.command.err: Copied (new)
2026/06/04 17:52:02 INFO  : Logs_Intermediates/LrAnnotation/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603223443.log: Copied (new)
2026/06/04 17:52:02 INFO  : ica_logs/work/3f/f041d01d784625e06a5d168a107c74/work/a9/f020b9814d2d73d417d3cafebb4c20/DnaFastqValidation/DnaFastqValidation-20260603200123.log: Copied (new)
2026/06/04 17:52:02 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/b2/a69245e71888f8d06781673f111cb1/.command.run: Copied (new)
2026/06/04 17:52:02 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/b2/a69245e71888f8d06781673f111cb1/.command.sh: Copied (new)
2026/06/04 17:52:02 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/b2/a69245e71888f8d06781673f111cb1/.exitcode: Copied (new)
2026/06/04 17:52:02 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/b2/a69245e71888f8d06781673f111cb1/.command.trace: Copied (new)
2026/06/04 17:52:02 INFO  : Logs_Intermediates/Contamination/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna_contamination.json: Copied (new)
2026/06/04 17:52:02 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/b2/a69245e71888f8d06781673f111cb1/ResourceVerification-20260603194955.log: Copied (new)
2026/06/04 17:52:02 INFO  : Logs_Intermediates/Contamination/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/Spoiler-20260603230316.log: Copied (new)
2026/06/04 17:52:02 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/b2/a69245e71888f8d06781673f111cb1/.command.log: Copied (new)
2026/06/04 17:52:02 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.combined.counts.txt.gz: Copied (new)
2026/06/04 17:52:02 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:52:02 INFO  : Logs_Intermediates/Annotation/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_Annotated.json.gz: Copied (new)
2026/06/04 17:52:02 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.bam.md5sum: Copied (new)
2026/06/04 17:52:02 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:52:02 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/b2/a69245e71888f8d06781673f111cb1/.command.out: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.gff3: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.exon_hist.csv: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.bam.bai: Copied (new)
2026/06/04 17:52:03 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/1b/b5682ba94047da35ba074628fb2641/SampleAnalysisResults/659_cZs-T1-TDNA-1_HLNLMDRX7_1_SARJeantLog-20260603230849.log: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.fastq_list.csv: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.insert-stats.tab: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_log.txt: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_output.json: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.pileup.txt: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:52:03 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/06/04 17:52:04 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/10/4f3506bcbad2f708de80820a4eb52e/.command.begin: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780517574878_9417.log: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780517574894_9417.log: Copied (new)
2026/06/04 17:52:04 INFO  : Logs_Intermediates/CombinedVariantOutput/659_dH2-T1-TDNA-1_HLNLMDRX7_1/659_dH2-T1-TDNA-1_HLNLMDRX7_1_CombinedVariantOutput.tsv: Copied (new)
2026/06/04 17:52:05 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions.txt: Copied (new)
2026/06/04 17:52:05 INFO  : Logs_Intermediates/MetricsOutput/659_dH2-T1-TDNA-1_HLNLMDRX7_1/659_dH2-T1-TDNA-1_HLNLMDRX7_1_MetricsOutput.tsv: Copied (new)
2026/06/04 17:52:05 INFO  : ica_logs/out/Logs_Intermediates/SampleSheetValidation/ValidationService.log-20260603193431.log: Copied (new)
2026/06/04 17:52:05 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/10/4f3506bcbad2f708de80820a4eb52e/.command.err: Copied (new)
2026/06/04 17:52:05 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:52:05 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/10/4f3506bcbad2f708de80820a4eb52e/.command.out: Copied (new)
2026/06/04 17:52:05 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/10/4f3506bcbad2f708de80820a4eb52e/.command.trace: Copied (new)
2026/06/04 17:52:05 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/10/4f3506bcbad2f708de80820a4eb52e/.command.run: Copied (new)
2026/06/04 17:52:05 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/10/4f3506bcbad2f708de80820a4eb52e/.exitcode: Copied (new)
2026/06/04 17:52:05 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/10/4f3506bcbad2f708de80820a4eb52e/.command.log: Copied (new)
2026/06/04 17:52:05 INFO  : Logs_Intermediates/Gis/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:52:05 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/10/4f3506bcbad2f708de80820a4eb52e/.command.sh: Copied (new)
2026/06/04 17:52:05 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/10/4f3506bcbad2f708de80820a4eb52e/Nirvana-20260603224244.log: Copied (new)
2026/06/04 17:52:05 INFO  : Logs_Intermediates/Gis/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.baf.bedgraph.gz.gzi: Copied (new)
2026/06/04 17:52:05 INFO  : Logs_Intermediates/Gis/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.abcn_genes.tsv: Copied (new)
2026/06/04 17:52:05 INFO  : Logs_Intermediates/Gis/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.abcn_annotated.vcf: Copied (new)
2026/06/04 17:52:05 INFO  : Logs_Intermediates/Gis/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:52:05 INFO  : Logs_Intermediates/Gis/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.gis.json: Copied (new)
2026/06/04 17:52:05 INFO  : Logs_Intermediates/Gis/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.baf.bedgraph.gz: Copied (new)
2026/06/04 17:52:05 INFO  : Logs_Intermediates/Gis/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780525395983_289999.log: Copied (new)
2026/06/04 17:52:05 INFO  : Logs_Intermediates/Gis/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna_bAllele.tsv: Copied (new)
2026/06/04 17:52:05 INFO  : Logs_Intermediates/Gis/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780525395990_289999.log: Copied (new)
2026/06/04 17:52:05 INFO  : Logs_Intermediates/Gis/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna_logRatio.original.tsv: Copied (new)
2026/06/04 17:52:05 INFO  : Logs_Intermediates/nextflow_work_logs/14/90b45705f9712d832dc9aec3631c0b/.command.err: Copied (new)
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2026/06/04 17:52:05 INFO  : Logs_Intermediates/nextflow_work_logs/14/90b45705f9712d832dc9aec3631c0b/.command.out: Copied (new)
2026/06/04 17:52:05 INFO  : Logs_Intermediates/nextflow_work_logs/14/90b45705f9712d832dc9aec3631c0b/.command.run: Copied (new)
2026/06/04 17:52:05 INFO  : Logs_Intermediates/Gis/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna_raw.tsv: Copied (new)
2026/06/04 17:52:06 INFO  : Logs_Intermediates/nextflow_work_logs/14/90b45705f9712d832dc9aec3631c0b/.command.sh: Copied (new)
2026/06/04 17:52:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
2026/06/04 17:52:06 INFO  : Logs_Intermediates/Tmb/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:52:06 INFO  : Logs_Intermediates/Tmb/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:52:06 INFO  : Logs_Intermediates/Gis/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna_logRatio.tsv: Copied (new)
2026/06/04 17:52:06 INFO  : Logs_Intermediates/Tmb/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:52:06 INFO  : Logs_Intermediates/Tmb/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:52:06 INFO  : Logs_Intermediates/Tmb/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:52:06 INFO  : Logs_Intermediates/Tmb/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.tmb.metrics.csv: Copied (new)
2026/06/04 17:52:06 INFO  : Logs_Intermediates/Tmb/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.tmb.trace.tsv: Copied (new)
2026/06/04 17:52:06 INFO  : Logs_Intermediates/Tmb/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:52:06 INFO  : Logs_Intermediates/Tmb/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603204846.log: Copied (new)
2026/06/04 17:52:06 INFO  : Logs_Intermediates/Tmb/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780526815478_334245.log: Copied (new)
2026/06/04 17:52:06 INFO  : Logs_Intermediates/Tmb/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780526815470_334245.log: Copied (new)
2026/06/04 17:52:06 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/1d/7eb94d3f8eb8bd5040a5366549eae6/.command.begin: Copied (new)
2026/06/04 17:52:06 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/1d/7eb94d3f8eb8bd5040a5366549eae6/.command.err: Copied (new)
2026/06/04 17:52:06 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/1d/7eb94d3f8eb8bd5040a5366549eae6/.command.log: Copied (new)
2026/06/04 17:52:06 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/1d/7eb94d3f8eb8bd5040a5366549eae6/.command.out: Copied (new)
2026/06/04 17:52:06 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/1d/7eb94d3f8eb8bd5040a5366549eae6/.command.run: Copied (new)
2026/06/04 17:52:06 INFO  : Logs_Intermediates/Tmb/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz: Copied (new)
2026/06/04 17:52:06 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/1d/7eb94d3f8eb8bd5040a5366549eae6/.exitcode: Copied (new)
2026/06/04 17:52:06 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/1d/7eb94d3f8eb8bd5040a5366549eae6/.command.trace: Copied (new)
2026/06/04 17:52:06 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/1d/7eb94d3f8eb8bd5040a5366549eae6/.command.sh: Copied (new)
2026/06/04 17:52:06 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/1d/7eb94d3f8eb8bd5040a5366549eae6/gen_coverage_reports.log: Copied (new)
2026/06/04 17:52:06 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna/LrCalculator-20260603224245.log: Copied (new)
2026/06/04 17:52:06 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603225001.log: Copied (new)
2026/06/04 17:52:06 INFO  : Logs_Intermediates/nextflow_work_logs/16/1ad92224d09af2583553a15238af92/.command.out: Copied (new)
2026/06/04 17:52:06 INFO  : Logs_Intermediates/nextflow_work_logs/16/1ad92224d09af2583553a15238af92/.command.err: Copied (new)
2026/06/04 17:52:07 INFO  : Logs_Intermediates/nextflow_work_logs/16/1ad92224d09af2583553a15238af92/.command.log: Copied (new)
2026/06/04 17:52:07 INFO  : Logs_Intermediates/nextflow_work_logs/16/1ad92224d09af2583553a15238af92/.command.run: Copied (new)
2026/06/04 17:52:07 INFO  : Logs_Intermediates/nextflow_work_logs/16/1ad92224d09af2583553a15238af92/.command.sh: Copied (new)
2026/06/04 17:52:07 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/1a/3a48c1beef143145d8e22eeb1d0295/.command.begin: Copied (new)
2026/06/04 17:52:07 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/1a/3a48c1beef143145d8e22eeb1d0295/.command.err: Copied (new)
2026/06/04 17:52:07 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/1a/3a48c1beef143145d8e22eeb1d0295/.command.out: Copied (new)
2026/06/04 17:52:07 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/1a/3a48c1beef143145d8e22eeb1d0295/.command.log: Copied (new)
2026/06/04 17:52:07 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/1a/3a48c1beef143145d8e22eeb1d0295/.command.sh: Copied (new)
2026/06/04 17:52:07 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/1a/3a48c1beef143145d8e22eeb1d0295/.command.run: Copied (new)
2026/06/04 17:52:07 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/1a/3a48c1beef143145d8e22eeb1d0295/.command.trace: Copied (new)
2026/06/04 17:52:07 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/1a/3a48c1beef143145d8e22eeb1d0295/.exitcode: Copied (new)
2026/06/04 17:52:07 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/10/8a4cd47f20b2a0df7f0e06ab16220b/.command.begin: Copied (new)
2026/06/04 17:52:07 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/10/8a4cd47f20b2a0df7f0e06ab16220b/.command.err: Copied (new)
2026/06/04 17:52:07 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/10/8a4cd47f20b2a0df7f0e06ab16220b/.command.out: Copied (new)
2026/06/04 17:52:07 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/10/8a4cd47f20b2a0df7f0e06ab16220b/.command.sh: Copied (new)
2026/06/04 17:52:07 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/10/8a4cd47f20b2a0df7f0e06ab16220b/.command.run: Copied (new)
2026/06/04 17:52:07 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/10/8a4cd47f20b2a0df7f0e06ab16220b/.command.log: Copied (new)
2026/06/04 17:52:07 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/10/8a4cd47f20b2a0df7f0e06ab16220b/.command.trace: Copied (new)
2026/06/04 17:52:07 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/10/8a4cd47f20b2a0df7f0e06ab16220b/.exitcode: Copied (new)
2026/06/04 17:52:07 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780522936307_205642.log: Copied (new)
2026/06/04 17:52:07 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:52:07 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/10/8a4cd47f20b2a0df7f0e06ab16220b/Nirvana-20260603201809.log: Copied (new)
2026/06/04 17:52:07 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:52:07 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780522936298_205642.log: Copied (new)
2026/06/04 17:52:07 INFO  : ica_logs/out/Logs_Intermediates/SampleAnalysisResults/659_bea-T1-TDNA-1_HLNLMDRX7_1_SARJeantLog-20260603230714.log: Copied (new)
2026/06/04 17:52:07 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:52:07 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:52:07 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:52:07 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780517936647_46796.log: Copied (new)
2026/06/04 17:52:07 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780517936662_46796.log: Copied (new)
2026/06/04 17:52:07 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:52:07 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:52:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:52:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:52:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:52:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:52:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:52:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:52:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:52:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:52:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/06/04 17:52:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:52:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/06/04 17:52:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:52:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780525643699_297020.log: Copied (new)
2026/06/04 17:52:08 INFO  : Logs_Intermediates/LrCalculator/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
2026/06/04 17:52:08 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780525643691_297020.log: Copied (new)
2026/06/04 17:52:08 INFO  : ica_logs/out/Logs_Intermediates/Annotation/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603224837.log: Copied (new)
2026/06/04 17:52:08 INFO  : Logs_Intermediates/LrCalculator/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/LrCalculator-20260603224958.log: Copied (new)
2026/06/04 17:52:08 INFO  : Logs_Intermediates/DnaCoverageReports/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.exon_cov_report.tsv: Copied (new)
2026/06/04 17:52:08 INFO  : Logs_Intermediates/DnaCoverageReports/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.gene_cov_report.tsv: Copied (new)
2026/06/04 17:52:08 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.bam.md5sum: Copied (new)
2026/06/04 17:52:08 INFO  : Logs_Intermediates/DnaCoverageReports/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/06/04 17:52:08 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:52:08 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:52:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.gff3: Copied (new)
2026/06/04 17:52:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:52:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.bam.bai: Copied (new)
2026/06/04 17:52:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/06/04 17:52:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/06/04 17:52:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:52:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/06/04 17:52:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/06/04 17:52:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/06/04 17:52:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/06/04 17:52:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/06/04 17:52:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.exon_hist.csv: Copied (new)
2026/06/04 17:52:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/06/04 17:52:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/06/04 17:52:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.fastq_list.csv: Copied (new)
2026/06/04 17:52:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:52:09 INFO  : Logs_Intermediates/FastqGeneration/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna_S13_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:52:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/06/04 17:52:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/06/04 17:52:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/06/04 17:52:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/06/04 17:52:09 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/06/04 17:52:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/06/04 17:52:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/06/04 17:52:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:52:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:52:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:52:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:52:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/06/04 17:52:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.insert-stats.tab: Copied (new)
2026/06/04 17:52:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/06/04 17:52:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_output.json: Copied (new)
2026/06/04 17:52:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_log.txt: Copied (new)
2026/06/04 17:52:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:52:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/06/04 17:52:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:52:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:52:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.pileup.txt: Copied (new)
2026/06/04 17:52:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:52:10 INFO  : Logs_Intermediates/FastqGeneration/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna_S30_L002_R2_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:52:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:52:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:52:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:52:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:52:10 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:52:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:52:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:52:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/06/04 17:52:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/06/04 17:52:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:52:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/06/04 17:52:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/06/04 17:52:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/06/04 17:52:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/06/04 17:52:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:52:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/06/04 17:52:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:52:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/06/04 17:52:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/06/04 17:52:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/06/04 17:52:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/06/04 17:52:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/06/04 17:52:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/06/04 17:52:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/06/04 17:52:11 INFO  : Logs_Intermediates/FastqGeneration/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna_S30_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:52:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:52:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:52:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:52:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/06/04 17:52:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/06/04 17:52:11 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/21/52931c42698052f73d5489b5355205/.command.log: Copied (new)
2026/06/04 17:52:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/06/04 17:52:12 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/06/04 17:52:12 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/06/04 17:52:12 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/06/04 17:52:12 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/06/04 17:52:12 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/06/04 17:52:12 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/06/04 17:52:12 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions.txt: Copied (new)
2026/06/04 17:52:12 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:52:12 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780519189320_80927.log: Copied (new)
2026/06/04 17:52:12 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0d/3e1530cfc461d86e531194ed9a2430/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:52:12 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780519189304_80927.log: Copied (new)
2026/06/04 17:52:12 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0d/3e1530cfc461d86e531194ed9a2430/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:52:12 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0d/3e1530cfc461d86e531194ed9a2430/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:52:12 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/16/1ad92224d09af2583553a15238af92/Gis/dragen_syslog_1780525498314_294721.log: Copied (new)
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2026/06/04 17:52:13 INFO  : Logs_Intermediates/LrAnnotation/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna_DNAExonCNV_Annotated.json.gz: Copied (new)
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2026/06/04 17:52:13 INFO  : Logs_Intermediates/MetricsOutput/659_dZX-T1-TDNA-1_HLNLMDRX7_1/659_dZX-T1-TDNA-1_HLNLMDRX7_1_MetricsOutput.tsv: Copied (new)
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2026/06/04 17:52:15 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/20/891e3b5bd8fda7adc7ba5fb388028f/.exitcode: Copied (new)
2026/06/04 17:52:15 INFO  : Logs_Intermediates/FastqGeneration/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna_S12_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:52:15 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780523122684_212875.log: Copied (new)
2026/06/04 17:52:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.bam.md5sum: Copied (new)
2026/06/04 17:52:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:52:15 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780523122676_212875.log: Copied (new)
2026/06/04 17:52:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:52:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/06/04 17:52:15 INFO  : Logs_Intermediates/FastqGeneration/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna_S12_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:52:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:52:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.gff3: Copied (new)
2026/06/04 17:52:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/06/04 17:52:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/06/04 17:52:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:52:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/06/04 17:52:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/06/04 17:52:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/06/04 17:52:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/06/04 17:52:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.exon_hist.csv: Copied (new)
2026/06/04 17:52:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/06/04 17:52:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/06/04 17:52:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.fastq_list.csv: Copied (new)
2026/06/04 17:52:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:52:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/06/04 17:52:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/06/04 17:52:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/06/04 17:52:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/06/04 17:52:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/06/04 17:52:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/06/04 17:52:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:52:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/06/04 17:52:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.bam.bai: Copied (new)
2026/06/04 17:52:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:52:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:52:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.insert-stats.tab: Copied (new)
2026/06/04 17:52:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/06/04 17:52:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:52:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_log.txt: Copied (new)
2026/06/04 17:52:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/06/04 17:52:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:52:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_output.json: Copied (new)
2026/06/04 17:52:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/06/04 17:52:16 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/FastqGeneration/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna_S9_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.pileup.txt: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/FastqGeneration/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna_S9_L002_R2_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions.txt: Copied (new)
2026/06/04 17:52:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/06/04 17:52:18 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/1a/d2ad1974d198c58693d71f53c62ef2/.command.begin: Copied (new)
2026/06/04 17:52:18 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/1a/d2ad1974d198c58693d71f53c62ef2/.command.err: Copied (new)
2026/06/04 17:52:18 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780521227906_139825.log: Copied (new)
2026/06/04 17:52:18 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/1a/d2ad1974d198c58693d71f53c62ef2/.command.log: Copied (new)
2026/06/04 17:52:18 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/1a/d2ad1974d198c58693d71f53c62ef2/.command.run: Copied (new)
2026/06/04 17:52:18 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/1a/d2ad1974d198c58693d71f53c62ef2/.command.out: Copied (new)
2026/06/04 17:52:18 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/1a/d2ad1974d198c58693d71f53c62ef2/.command.sh: Copied (new)
2026/06/04 17:52:18 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/1a/d2ad1974d198c58693d71f53c62ef2/.command.trace: Copied (new)
2026/06/04 17:52:18 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:52:18 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/1a/d2ad1974d198c58693d71f53c62ef2/.exitcode: Copied (new)
2026/06/04 17:52:18 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603225000.log: Copied (new)
2026/06/04 17:52:18 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780521227890_139825.log: Copied (new)
2026/06/04 17:52:18 INFO  : Logs_Intermediates/LrCalculator/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
2026/06/04 17:52:18 INFO  : Logs_Intermediates/LrCalculator/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/LrCalculator-20260603223443.log: Copied (new)
2026/06/04 17:52:18 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:52:18 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:52:18 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:52:18 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:52:18 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:52:18 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:52:18 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:52:18 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:52:18 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:52:18 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:52:18 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:52:18 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/06/04 17:52:18 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:52:18 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/06/04 17:52:18 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:52:18 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:52:18 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780523557042_226952.log: Copied (new)
2026/06/04 17:52:18 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/1b/c91599a76afa34cd8eb61584589514/.command.begin: Copied (new)
2026/06/04 17:52:18 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/1b/c91599a76afa34cd8eb61584589514/.command.err: Copied (new)
2026/06/04 17:52:18 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/1b/c91599a76afa34cd8eb61584589514/.command.run: Copied (new)
2026/06/04 17:52:18 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/1b/c91599a76afa34cd8eb61584589514/.command.out: Copied (new)
2026/06/04 17:52:18 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/1b/c91599a76afa34cd8eb61584589514/.command.log: Copied (new)
2026/06/04 17:52:18 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/1b/c91599a76afa34cd8eb61584589514/.command.trace: Copied (new)
2026/06/04 17:52:18 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/1b/c91599a76afa34cd8eb61584589514/.exitcode: Copied (new)
2026/06/04 17:52:18 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/1b/c91599a76afa34cd8eb61584589514/.command.sh: Copied (new)
2026/06/04 17:52:18 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780523557034_226952.log: Copied (new)
2026/06/04 17:52:18 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/21/52931c42698052f73d5489b5355205/.command.out: Copied (new)
2026/06/04 17:52:18 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/1b/c91599a76afa34cd8eb61584589514/gen_coverage_reports.log: Copied (new)
2026/06/04 17:52:18 INFO  : Logs_Intermediates/DnaCoverageReports/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/06/04 17:52:18 INFO  : Logs_Intermediates/DnaCoverageReports/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.gene_cov_report.tsv: Copied (new)
2026/06/04 17:52:18 INFO  : ica_logs/out/Logs_Intermediates/Annotation/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603223408.log: Copied (new)
2026/06/04 17:52:18 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/1a/a2104882081bc5de0ea0598019af1a/.command.begin: Copied (new)
2026/06/04 17:52:18 INFO  : ica_logs/out/Logs_Intermediates/Contamination/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/Spoiler-20260603230320.log: Copied (new)
2026/06/04 17:52:18 INFO  : ica_logs/out/Logs_Intermediates/DnaCoverageReports/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/06/04 17:52:19 INFO  : Logs_Intermediates/DnaCoverageReports/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.exon_cov_report.tsv: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/1a/a2104882081bc5de0ea0598019af1a/.command.err: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/1a/a2104882081bc5de0ea0598019af1a/.command.out: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/1a/a2104882081bc5de0ea0598019af1a/.command.log: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/1a/a2104882081bc5de0ea0598019af1a/.command.trace: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/1a/a2104882081bc5de0ea0598019af1a/.command.sh: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/1a/a2104882081bc5de0ea0598019af1a/.exitcode: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/1a/a2104882081bc5de0ea0598019af1a/.command.run: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/1a/a2104882081bc5de0ea0598019af1a/gen_coverage_reports.log: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/out/Logs_Intermediates/Gis/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780524351899_251415.log: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/out/Logs_Intermediates/Gis/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780524351891_251415.log: Copied (new)
2026/06/04 17:52:19 INFO  : Logs_Intermediates/FastqGeneration/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna_S12_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:52:19 INFO  : Logs_Intermediates/Contamination/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna_contamination.json: Copied (new)
2026/06/04 17:52:19 INFO  : Logs_Intermediates/Annotation/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:52:19 INFO  : Logs_Intermediates/Contamination/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/Spoiler-20260603224722.log: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/1b/27f9f89a6ec727bee583f8ee4db873/Gis/dragen_run_1780524260587_250809.log: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/17/c97cc789f76d68715247cb1883d589/DnaDragenCaller/1173_M5U-T1-TDNA-01_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/1b/27f9f89a6ec727bee583f8ee4db873/Gis/dragen_syslog_1780524260579_250809.log: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/17/c97cc789f76d68715247cb1883d589/DnaDragenCaller/1173_M5U-T1-TDNA-01_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:52:19 INFO  : Logs_Intermediates/Annotation/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603223437.log: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/2c/985f3dc6c9c0db67dca8ade1adcbf6/.command.begin: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/2c/985f3dc6c9c0db67dca8ade1adcbf6/.command.err: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/2c/985f3dc6c9c0db67dca8ade1adcbf6/.command.log: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/17/c97cc789f76d68715247cb1883d589/DnaDragenCaller/1173_M5U-T1-TDNA-01_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/2c/985f3dc6c9c0db67dca8ade1adcbf6/.command.out: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/2c/985f3dc6c9c0db67dca8ade1adcbf6/.command.sh: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/2c/985f3dc6c9c0db67dca8ade1adcbf6/.command.run: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/2c/985f3dc6c9c0db67dca8ade1adcbf6/.exitcode: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/17/c97cc789f76d68715247cb1883d589/DnaDragenCaller/dragen_syslog_1780520328384_111448.log: Copied (new)
2026/06/04 17:52:19 INFO  : Logs_Intermediates/LrAnnotation/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna_DNAExonCNV_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/2c/985f3dc6c9c0db67dca8ade1adcbf6/.command.trace: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/17/c97cc789f76d68715247cb1883d589/DnaDragenCaller/dragen_run_1780520328399_111448.log: Copied (new)
2026/06/04 17:52:19 INFO  : Logs_Intermediates/LrAnnotation/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna_DNAExonCNV_Annotated.json.gz: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/b9/f5a77dad5b2c683575642560de0e76/.command.env: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/b9/f5a77dad5b2c683575642560de0e76/.command.begin: Copied (new)
2026/06/04 17:52:19 INFO  : Logs_Intermediates/LrAnnotation/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603224248.log: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/b9/f5a77dad5b2c683575642560de0e76/.command.err: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/b9/f5a77dad5b2c683575642560de0e76/.command.out: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/b9/f5a77dad5b2c683575642560de0e76/.command.log: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/b9/f5a77dad5b2c683575642560de0e76/.command.trace: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/b9/f5a77dad5b2c683575642560de0e76/.exitcode: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0f/9a333399423df9aa32bf55c3d3b75e/Gis/dragen_run_1780525354177_287993.log: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/b9/f5a77dad5b2c683575642560de0e76/.command.sh: Copied (new)
2026/06/04 17:52:19 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.combined.counts.txt.gz: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/b8/31cda7107977849a16ebc4c67c7153/work/b9/f5a77dad5b2c683575642560de0e76/.command.run: Copied (new)
2026/06/04 17:52:19 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/0f/9a333399423df9aa32bf55c3d3b75e/Gis/dragen_syslog_1780525354169_287993.log: Copied (new)
2026/06/04 17:52:19 INFO  : Logs_Intermediates/CombinedVariantOutput/659_dot-T1-TDNA-1_HLNLMDRX7_1/659_dot-T1-TDNA-1_HLNLMDRX7_1_CombinedVariantOutput.tsv: Copied (new)
2026/06/04 17:52:19 INFO  : Logs_Intermediates/Gis/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:52:19 INFO  : Logs_Intermediates/Gis/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna.abcn_genes.tsv: Copied (new)
2026/06/04 17:52:20 INFO  : Logs_Intermediates/Gis/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna.gis.json: Copied (new)
2026/06/04 17:52:20 INFO  : Logs_Intermediates/Gis/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna.baf.bedgraph.gz.gzi: Copied (new)
2026/06/04 17:52:20 INFO  : Logs_Intermediates/Gis/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna.abcn_annotated.vcf: Copied (new)
2026/06/04 17:52:20 INFO  : Logs_Intermediates/Gis/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:52:20 INFO  : Logs_Intermediates/Gis/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna.baf.bedgraph.gz: Copied (new)
2026/06/04 17:52:20 INFO  : Logs_Intermediates/Annotation/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_Annotated.json.gz: Copied (new)
2026/06/04 17:52:20 INFO  : Logs_Intermediates/Gis/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780524703405_263697.log: Copied (new)
2026/06/04 17:52:20 INFO  : Logs_Intermediates/Gis/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna_bAllele.tsv: Copied (new)
2026/06/04 17:52:20 INFO  : Logs_Intermediates/FastqGeneration/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna_S30_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:52:20 INFO  : Logs_Intermediates/Gis/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780524703398_263697.log: Copied (new)
2026/06/04 17:52:20 INFO  : Logs_Intermediates/nextflow_work_logs/17/c97cc789f76d68715247cb1883d589/.command.err: Copied (new)
2026/06/04 17:52:20 INFO  : Logs_Intermediates/MetricsOutput/659_dot-T1-TDNA-1_HLNLMDRX7_1/659_dot-T1-TDNA-1_HLNLMDRX7_1_MetricsOutput.tsv: Copied (new)
2026/06/04 17:52:20 INFO  : Logs_Intermediates/Gis/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna_raw.tsv: Copied (new)
2026/06/04 17:52:20 INFO  : Logs_Intermediates/nextflow_work_logs/17/c97cc789f76d68715247cb1883d589/.command.log: Copied (new)
2026/06/04 17:52:20 INFO  : Logs_Intermediates/Gis/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna_logRatio.tsv: Copied (new)
2026/06/04 17:52:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/22/412c25fcd9453014d0d40d448dbd1e/.command.begin: Copied (new)
2026/06/04 17:52:20 INFO  : Logs_Intermediates/nextflow_work_logs/17/c97cc789f76d68715247cb1883d589/.command.out: Copied (new)
2026/06/04 17:52:20 INFO  : Logs_Intermediates/Gis/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna_logRatio.original.tsv: Copied (new)
2026/06/04 17:52:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/22/412c25fcd9453014d0d40d448dbd1e/.command.err: Copied (new)
2026/06/04 17:52:20 INFO  : Logs_Intermediates/nextflow_work_logs/17/c97cc789f76d68715247cb1883d589/.command.run: Copied (new)
2026/06/04 17:52:20 INFO  : Logs_Intermediates/nextflow_work_logs/17/c97cc789f76d68715247cb1883d589/.command.sh: Copied (new)
2026/06/04 17:52:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/22/412c25fcd9453014d0d40d448dbd1e/.command.log: Copied (new)
2026/06/04 17:52:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/22/412c25fcd9453014d0d40d448dbd1e/.command.out: Copied (new)
2026/06/04 17:52:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/22/412c25fcd9453014d0d40d448dbd1e/.exitcode: Copied (new)
2026/06/04 17:52:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/22/412c25fcd9453014d0d40d448dbd1e/.command.run: Copied (new)
2026/06/04 17:52:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/22/412c25fcd9453014d0d40d448dbd1e/.command.sh: Copied (new)
2026/06/04 17:52:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/22/412c25fcd9453014d0d40d448dbd1e/Nirvana-20260603213036.log: Copied (new)
2026/06/04 17:52:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/22/412c25fcd9453014d0d40d448dbd1e/.command.trace: Copied (new)
2026/06/04 17:52:20 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780525782169_298064.log: Copied (new)
2026/06/04 17:52:20 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:52:20 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:52:20 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780525782161_298064.log: Copied (new)
2026/06/04 17:52:20 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/LrCalculator-20260603224959.log: Copied (new)
2026/06/04 17:52:20 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:52:20 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:52:20 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780517469303_7370.log: Copied (new)
2026/06/04 17:52:20 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.bam.md5sum: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/06/04 17:52:21 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780517469319_7370.log: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.gff3: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.fastq_list.csv: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.exon_hist.csv: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.bam.bai: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.insert-stats.tab: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/06/04 17:52:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_output.json: Copied (new)
2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_log.txt: Copied (new)
2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/06/04 17:52:22 INFO  : 
Transferred:   	  199.424 GiB / 409.914 GiB, 49%, 1.356 GiB/s, ETA 2m35s
Transferred:         5117 / 14718, 35%
Elapsed time:      2m30.0s
Transferring:
 * Logs_Intermediates/Dna…01_HLNLMDRX7_1_dna.bam: 87% /4.461Gi, 24.768Mi/s, 22s
 * Logs_Intermediates/Dna…01_HLNLMDRX7_1_dna.bam: 87% /4.128Gi, 30.721Mi/s, 16s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 75% /4.929Gi, 24.402Mi/s, 50s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 76% /5.160Gi, 34.980Mi/s, 36s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 69% /4.711Gi, 23.322Mi/s, 1m2s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 70% /4.999Gi, 29.705Mi/s, 51s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 59% /5.417Gi, 25.674Mi/s, 1m27s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 76% /3.966Gi, 26.817Mi/s, 35s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 53% /4.751Gi, 30.311Mi/s, 1m14s
 * Logs_Intermediates/Fas…3_L002_R1_001.fastq.gz: 98% /2.236Gi, 10.721Mi/s, 2s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 51% /5.229Gi, 29.461Mi/s, 1m28s
 * Logs_Intermediates/Fas…2_L002_R2_001.fastq.gz: 98% /2.063Gi, 21.115Mi/s, 1s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 46% /4.573Gi, 27.564Mi/s, 1m30s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 45% /4.391Gi, 22.833Mi/s, 1m47s
 * Logs_Intermediates/Fas…9_L001_R1_001.fastq.gz: 84% /1.884Gi, 17.944Mi/s, 16s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 37% /5.364Gi, 24.048Mi/s, 2m23s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 31% /4.924Gi, 21.115Mi/s, 2m43s
 * Logs_Intermediates/Fas…6_L001_R1_001.fastq.gz: 98% /1.677Gi, 24.291Mi/s, 1s
 * Logs_Intermediates/Fas…6_L001_R2_001.fastq.gz: 96% /1.786Gi, 22.801Mi/s, 2s
 * Logs_Intermediates/Fas…6_L002_R1_001.fastq.gz: 82% /1.695Gi, 20.746Mi/s, 14s
 * Logs_Intermediates/Fas…6_L002_R2_001.fastq.gz: 82% /1.810Gi, 24.923Mi/s, 12s
 * Logs_Intermediates/Fas…3_L001_R1_001.fastq.gz: 69% /1.617Gi, 21.281Mi/s, 23s
 * Logs_Intermediates/Fas…3_L001_R2_001.fastq.gz: 87% /1.651Gi, 25.879Mi/s, 8s
 * Logs_Intermediates/Fas…3_L002_R1_001.fastq.gz: 87% /1.651Gi, 27.910Mi/s, 7s
 * Logs_Intermediates/Fas…3_L002_R2_001.fastq.gz: 72% /1.685Gi, 22.500Mi/s, 21s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 28% /5.095Gi, 31.018Mi/s, 1m59s
 * Logs_Intermediates/Fas…5_L001_R1_001.fastq.gz: 71% /1.794Gi, 30.198Mi/s, 17s
 * Logs_Intermediates/Fas…5_L001_R2_001.fastq.gz: 74% /1.812Gi, 32.571Mi/s, 14s
 * Logs_Intermediates/Fas…5_L002_R1_001.fastq.gz: 63% /1.809Gi, 21.739Mi/s, 30s
 * Logs_Intermediates/Fas…5_L002_R2_001.fastq.gz: 68% /1.828Gi, 26.859Mi/s, 22s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 24% /4.297Gi, 23.048Mi/s, 2m25s
 * Logs_Intermediates/Fas…5_L001_R1_001.fastq.gz: 47% /1.956Gi, 33.724Mi/s, 30s
 * Logs_Intermediates/Fas…5_L001_R2_001.fastq.gz: 46% /2.014Gi, 32.254Mi/s, 34s
 * Logs_Intermediates/Fas…5_L002_R1_001.fastq.gz: 41% /1.970Gi, 29.171Mi/s, 40s
 * Logs_Intermediates/Fas…5_L002_R2_001.fastq.gz: 35% /2.031Gi, 23.767Mi/s, 56s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 13% /4.893Gi, 23.688Mi/s, 3m2s
 * Logs_Intermediates/Fas…3_L001_R1_001.fastq.gz: 19% /1.880Gi, 19.318Mi/s, 1m19s
 * Logs_Intermediates/Fas…3_L001_R2_001.fastq.gz: 29% /1.939Gi, 29.018Mi/s, 48s
 * Logs_Intermediates/Fas…3_L002_R1_001.fastq.gz: 34% /1.904Gi, 34.345Mi/s, 37s
 * Logs_Intermediates/Fas…3_L002_R2_001.fastq.gz: 23% /1.967Gi, 23.930Mi/s, 1m4s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam:  8% /4.616Gi, 20.105Mi/s, 3m36s
 * Logs_Intermediates/Fas…8_L001_R1_001.fastq.gz: 28% /1.739Gi, 30.000Mi/s, 42s
 * Logs_Intermediates/Fas…8_L001_R2_001.fastq.gz: 20% /1.809Gi, 24.000Mi/s, 1m1s
 * Logs_Intermediates/Fas…8_L002_R1_001.fastq.gz: 25% /1.745Gi, 26.000Mi/s, 51s
 * Logs_Intermediates/Fas…8_L002_R2_001.fastq.gz: 24% /1.818Gi, 27.908Mi/s, 50s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam:  6% /5.032Gi, 22.154Mi/s, 3m38s
 * Logs_Intermediates/Fas…6_L001_R1_001.fastq.gz: 10% /2.133Gi, 28.000Mi/s, 1m10s
 * Logs_Intermediates/Fas…6_L001_R2_001.fastq.gz: 11% /2.124Gi, 31.594Mi/s, 1m0s
 * Logs_Intermediates/Fas…6_L002_R1_001.fastq.gz:  5% /2.152Gi, 16.000Mi/s, 2m9s
 * Logs_Intermediates/Fas…6_L002_R2_001.fastq.gz: 10% /2.138Gi, 28.000Mi/s, 1m9s
 * ica_logs/work/67/bf96a…Log-20260603230610.log: 45% /69.622Mi, 4.000Mi/s, 9s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam:  1% /5.053Gi, 10.667Mi/s, 7m59s
 * Logs_Intermediates/Fas…7_L001_R1_001.fastq.gz:  0% /1.709Gi, 0/s, -
 * Logs_Intermediates/Fas…7_L001_R2_001.fastq.gz:  3% /1.759Gi, 18.672Mi/s, 1m33s
 * Logs_Intermediates/Fas…7_L002_R1_001.fastq.gz:  0% /1.724Gi, 0/s, -
 * Logs_Intermediates/Fas…7_L002_R2_001.fastq.gz:  0% /1.776Gi, 0/s, -
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam:  0% /5.199Gi, 0/s, -
 * Logs_Intermediates/Dna….hard-filtered.gvcf.gz: 11% /17.878Mi, 0/s, -
 * Logs_Intermediates/Dna…_1_dna.pcr-model-0.log: transferring
 * Logs_Intermediates/Dna…MDRX7_1_dna.pileup.txt: transferring
 * Logs_Intermediates/Dna…w.hard-filtered.vcf.gz: transferring
 * Logs_Intermediates/Dna…filtered.vcf.gz.md5sum: transferring
 * Logs_Intermediates/Dna…rd-filtered.vcf.gz.tbi: transferring
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.seg: transferring

2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.pileup.txt: Copied (new)
2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/06/04 17:52:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/06/04 17:52:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/06/04 17:52:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/06/04 17:52:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:52:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:52:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:52:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/06/04 17:52:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/06/04 17:52:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/06/04 17:52:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/06/04 17:52:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/06/04 17:52:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/06/04 17:52:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/06/04 17:52:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/06/04 17:52:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780518517942_63232.log: Copied (new)
2026/06/04 17:52:23 INFO  : Logs_Intermediates/Tmb/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:52:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780518517958_63232.log: Copied (new)
2026/06/04 17:52:23 INFO  : Logs_Intermediates/Tmb/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:52:23 INFO  : Logs_Intermediates/Tmb/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:52:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions.txt: Copied (new)
2026/06/04 17:52:23 INFO  : Logs_Intermediates/Tmb/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:52:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:52:23 INFO  : Logs_Intermediates/Tmb/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:52:23 INFO  : Logs_Intermediates/Tmb/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.tmb.metrics.csv: Copied (new)
2026/06/04 17:52:23 INFO  : Logs_Intermediates/Tmb/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:52:24 INFO  : Logs_Intermediates/Tmb/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780525897707_307380.log: Copied (new)
2026/06/04 17:52:24 INFO  : Logs_Intermediates/Tmb/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603203737.log: Copied (new)
2026/06/04 17:52:24 INFO  : Logs_Intermediates/Tmb/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780525897699_307380.log: Copied (new)
2026/06/04 17:52:24 INFO  : Logs_Intermediates/nextflow_work_logs/18/58a3d595b47bdf1c2706b326ae93b1/.command.err: Copied (new)
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2026/06/04 17:52:24 INFO  : Logs_Intermediates/Tmb/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz: Copied (new)
2026/06/04 17:52:24 INFO  : Logs_Intermediates/LrCalculator/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
2026/06/04 17:52:24 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603224247.log: Copied (new)
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2026/06/04 17:52:24 INFO  : ica_logs/out/Logs_Intermediates/Annotation/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603224539.log: Copied (new)
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2026/06/04 17:52:24 INFO  : ica_logs/out/Logs_Intermediates/DnaCoverageReports/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/gen_coverage_reports.log: Copied (new)
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2026/06/04 17:52:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/20/337e24a9def6a1fcb505da6d34fe13/.command.begin: Copied (new)
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2026/06/04 17:52:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/20/337e24a9def6a1fcb505da6d34fe13/.command.trace: Copied (new)
2026/06/04 17:52:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/17/2c0d2daba1030a39e3664af1e04d4e/.command.begin: Copied (new)
2026/06/04 17:52:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/20/337e24a9def6a1fcb505da6d34fe13/.exitcode: Copied (new)
2026/06/04 17:52:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/17/2c0d2daba1030a39e3664af1e04d4e/.command.err: Copied (new)
2026/06/04 17:52:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/17/2c0d2daba1030a39e3664af1e04d4e/.command.run: Copied (new)
2026/06/04 17:52:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/17/2c0d2daba1030a39e3664af1e04d4e/.command.trace: Copied (new)
2026/06/04 17:52:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/17/2c0d2daba1030a39e3664af1e04d4e/.command.log: Copied (new)
2026/06/04 17:52:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/17/2c0d2daba1030a39e3664af1e04d4e/.command.out: Copied (new)
2026/06/04 17:52:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/17/2c0d2daba1030a39e3664af1e04d4e/.exitcode: Copied (new)
2026/06/04 17:52:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/17/2c0d2daba1030a39e3664af1e04d4e/.command.sh: Copied (new)
2026/06/04 17:52:25 INFO  : ica_logs/out/Logs_Intermediates/Gis/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780522706512_198967.log: Copied (new)
2026/06/04 17:52:25 INFO  : ica_logs/out/Logs_Intermediates/Gis/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780522706505_198967.log: Copied (new)
2026/06/04 17:52:25 INFO  : Logs_Intermediates/Annotation/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:52:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/1b/064eac8c209ad3a505919a71cf515a/.command.begin: Copied (new)
2026/06/04 17:52:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/1b/064eac8c209ad3a505919a71cf515a/.command.err: Copied (new)
2026/06/04 17:52:25 INFO  : Logs_Intermediates/Annotation/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603223140.log: Copied (new)
2026/06/04 17:52:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/1b/064eac8c209ad3a505919a71cf515a/.command.out: Copied (new)
2026/06/04 17:52:25 INFO  : Logs_Intermediates/FastqGeneration/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna_S26_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:52:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/1b/064eac8c209ad3a505919a71cf515a/.command.run: Copied (new)
2026/06/04 17:52:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/1b/064eac8c209ad3a505919a71cf515a/.command.log: Copied (new)
2026/06/04 17:52:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/1b/064eac8c209ad3a505919a71cf515a/.command.trace: Copied (new)
2026/06/04 17:52:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/1b/064eac8c209ad3a505919a71cf515a/.exitcode: Copied (new)
2026/06/04 17:52:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/1b/064eac8c209ad3a505919a71cf515a/.command.sh: Copied (new)
2026/06/04 17:52:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/1b/064eac8c209ad3a505919a71cf515a/Nirvana-20260603223900.log: Copied (new)
2026/06/04 17:52:25 INFO  : Logs_Intermediates/Contamination/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/Spoiler-20260603225602.log: Copied (new)
2026/06/04 17:52:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
2026/06/04 17:52:25 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:52:25 INFO  : Logs_Intermediates/Contamination/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna_contamination.json: Copied (new)
2026/06/04 17:52:25 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:52:25 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:52:25 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:52:25 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:52:25 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:52:25 INFO  : Logs_Intermediates/Annotation/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_Annotated.json.gz: Copied (new)
2026/06/04 17:52:25 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:52:25 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:52:25 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:52:25 INFO  : Logs_Intermediates/CombinedVariantOutput/659_dtd-T1-TDNA-1_HLNLMDRX7_1/659_dtd-T1-TDNA-1_HLNLMDRX7_1_CombinedVariantOutput.tsv: Copied (new)
2026/06/04 17:52:25 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:52:25 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:52:25 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/06/04 17:52:25 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:52:26 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:52:26 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/06/04 17:52:26 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780524942108_270478.log: Copied (new)
2026/06/04 17:52:26 INFO  : Logs_Intermediates/FastqGeneration/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna_S13_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:52:26 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:52:26 INFO  : Logs_Intermediates/LrAnnotation/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna_DNAExonCNV_Annotated.json.gz: Copied (new)
2026/06/04 17:52:26 INFO  : Logs_Intermediates/LrAnnotation/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna_DNAExonCNV_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:52:26 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/30/1166b23d996c17453d4c852b76cf22/.command.begin: Copied (new)
2026/06/04 17:52:26 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/30/1166b23d996c17453d4c852b76cf22/.command.err: Copied (new)
2026/06/04 17:52:26 INFO  : Logs_Intermediates/LrAnnotation/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603223440.log: Copied (new)
2026/06/04 17:52:26 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780524942100_270478.log: Copied (new)
2026/06/04 17:52:26 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/30/1166b23d996c17453d4c852b76cf22/.command.run: Copied (new)
2026/06/04 17:52:26 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/30/1166b23d996c17453d4c852b76cf22/.command.sh: Copied (new)
2026/06/04 17:52:26 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/30/1166b23d996c17453d4c852b76cf22/.command.trace: Copied (new)
2026/06/04 17:52:26 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/30/1166b23d996c17453d4c852b76cf22/.exitcode: Copied (new)
2026/06/04 17:52:26 INFO  : Logs_Intermediates/Gis/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:52:26 INFO  : Logs_Intermediates/Gis/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.abcn_genes.tsv: Copied (new)
2026/06/04 17:52:26 INFO  : Logs_Intermediates/Gis/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.abcn_annotated.vcf: Copied (new)
2026/06/04 17:52:26 INFO  : Logs_Intermediates/Gis/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.baf.bedgraph.gz.gzi: Copied (new)
2026/06/04 17:52:26 INFO  : Logs_Intermediates/Gis/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.gis.json: Copied (new)
2026/06/04 17:52:26 INFO  : Logs_Intermediates/Gis/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.baf.bedgraph.gz: Copied (new)
2026/06/04 17:52:26 INFO  : Logs_Intermediates/Gis/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:52:26 INFO  : Logs_Intermediates/FastqGeneration/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna_S26_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:52:26 INFO  : Logs_Intermediates/Gis/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna_bAllele.tsv: Copied (new)
2026/06/04 17:52:26 INFO  : Logs_Intermediates/Gis/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna_logRatio.tsv: Copied (new)
2026/06/04 17:52:26 INFO  : Logs_Intermediates/Gis/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780524207797_249054.log: Copied (new)
2026/06/04 17:52:26 INFO  : Logs_Intermediates/Gis/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780524207804_249054.log: Copied (new)
2026/06/04 17:52:26 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/1a/3a48c1beef143145d8e22eeb1d0295/LrCalculator/LrCalculator-20260603223925.log: Copied (new)
2026/06/04 17:52:26 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/LrCalculator-20260603224247.log: Copied (new)
2026/06/04 17:52:26 INFO  : Logs_Intermediates/MetricsOutput/659_dtd-T1-TDNA-1_HLNLMDRX7_1/659_dtd-T1-TDNA-1_HLNLMDRX7_1_MetricsOutput.tsv: Copied (new)
2026/06/04 17:52:26 INFO  : Logs_Intermediates/Gis/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna_logRatio.original.tsv: Copied (new)
2026/06/04 17:52:27 INFO  : Logs_Intermediates/Gis/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna_raw.tsv: Copied (new)
2026/06/04 17:52:27 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna.combined.counts.txt.gz: Copied (new)
2026/06/04 17:52:27 INFO  : Logs_Intermediates/Tmb/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:52:27 INFO  : Logs_Intermediates/Tmb/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:52:27 INFO  : Logs_Intermediates/Tmb/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:52:27 INFO  : Logs_Intermediates/FastqGeneration/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna_S12_L002_R2_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:52:27 INFO  : Logs_Intermediates/Tmb/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna.tmb.metrics.csv: Copied (new)
2026/06/04 17:52:27 INFO  : Logs_Intermediates/Tmb/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:52:27 INFO  : Logs_Intermediates/Tmb/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:52:27 INFO  : Logs_Intermediates/Tmb/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:52:27 INFO  : Logs_Intermediates/Tmb/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603205945.log: Copied (new)
2026/06/04 17:52:27 INFO  : Logs_Intermediates/Tmb/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna.tmb.trace.tsv: Copied (new)
2026/06/04 17:52:27 INFO  : Logs_Intermediates/Tmb/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780526462404_324180.log: Copied (new)
2026/06/04 17:52:27 INFO  : Logs_Intermediates/Tmb/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780526462397_324180.log: Copied (new)
2026/06/04 17:52:27 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780523136155_213795.log: Copied (new)
2026/06/04 17:52:27 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/22/67e50cff499781fc3da67a38bbc920/.command.begin: Copied (new)
2026/06/04 17:52:27 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/22/67e50cff499781fc3da67a38bbc920/.command.err: Copied (new)
2026/06/04 17:52:27 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/22/67e50cff499781fc3da67a38bbc920/.command.env: Copied (new)
2026/06/04 17:52:27 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780523136146_213795.log: Copied (new)
2026/06/04 17:52:27 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/22/67e50cff499781fc3da67a38bbc920/.command.out: Copied (new)
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2026/06/04 17:52:33 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/21/ac4971e09465212c546f6aaf1751eb/.exitcode: Copied (new)
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2026/06/04 17:52:33 INFO  : Logs_Intermediates/DnaCoverageReports/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.gene_cov_report.tsv: Copied (new)
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2026/06/04 17:52:33 INFO  : Logs_Intermediates/DnaCoverageReports/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/gen_coverage_reports.log: Copied (new)
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2026/06/04 17:52:33 INFO  : Logs_Intermediates/LrCalculator/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
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2026/06/04 17:52:33 INFO  : ica_logs/out/Logs_Intermediates/Tmb/1173_CPJ-T1-TDNA-01_HLNLMDRX7_1_dna/Nirvana-20260603203909.log: Copied (new)
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2026/06/04 17:52:33 INFO  : Logs_Intermediates/Annotation/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_Annotated.json.gz.jsi: Copied (new)
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2026/06/04 17:52:34 INFO  : Logs_Intermediates/Annotation/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603224104.log: Copied (new)
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2026/06/04 17:52:34 INFO  : Logs_Intermediates/CombinedVariantOutput/659_du4-T1-TDNA-1_HLNLMDRX7_1/659_du4-T1-TDNA-1_HLNLMDRX7_1_CombinedVariantOutput.tsv: Copied (new)
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2026/06/04 17:52:34 INFO  : Logs_Intermediates/Contamination/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/Spoiler-20260603224723.log: Copied (new)
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2026/06/04 17:52:35 INFO  : Logs_Intermediates/FastqGeneration/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna_S23_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:52:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
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2026/06/04 17:52:35 INFO  : Logs_Intermediates/MetricsOutput/659_du4-T1-TDNA-1_HLNLMDRX7_1/659_du4-T1-TDNA-1_HLNLMDRX7_1_MetricsOutput.tsv: Copied (new)
2026/06/04 17:52:35 INFO  : Logs_Intermediates/Gis/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna_logRatio.original.tsv: Copied (new)
2026/06/04 17:52:35 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/LrCalculator-20260603223437.log: Copied (new)
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2026/06/04 17:52:35 INFO  : Logs_Intermediates/Tmb/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:52:35 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780520389157_114305.log: Copied (new)
2026/06/04 17:52:35 INFO  : Logs_Intermediates/Gis/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna_raw.tsv: Copied (new)
2026/06/04 17:52:35 INFO  : Logs_Intermediates/FastqGeneration/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna_S26_L002_R1_001.fastq.gz: Multi-thread Copied (new)
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2026/06/04 17:52:35 INFO  : Logs_Intermediates/Tmb/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603204717.log: Copied (new)
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2026/06/04 17:52:36 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/32/27eb3dc2a83d4ae50f61643d151bee/.exitcode: Copied (new)
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2026/06/04 17:52:36 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780521058595_128886.log: Copied (new)
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2026/06/04 17:52:36 INFO  : Logs_Intermediates/FastqGeneration/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna_S26_L002_R2_001.fastq.gz: Multi-thread Copied (new)
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2026/06/04 17:52:36 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/26/56d875d37033ae67eb57640a4677e9/.command.sh: Copied (new)
2026/06/04 17:52:36 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/26/56d875d37033ae67eb57640a4677e9/.exitcode: Copied (new)
2026/06/04 17:52:36 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/26/56d875d37033ae67eb57640a4677e9/.command.trace: Copied (new)
2026/06/04 17:52:37 INFO  : Logs_Intermediates/nextflow_work_logs/1a/a2104882081bc5de0ea0598019af1a/.command.out: Copied (new)
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2026/06/04 17:52:37 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780526536863_322907.log: Copied (new)
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2026/06/04 17:52:37 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:52:37 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780526536856_322907.log: Copied (new)
2026/06/04 17:52:37 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:52:37 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:52:37 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:52:37 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:52:37 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:52:37 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:52:37 INFO  : Logs_Intermediates/FastqGeneration/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna_S9_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:52:37 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:52:37 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
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2026/06/04 17:52:37 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
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2026/06/04 17:52:37 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:52:37 INFO  : Logs_Intermediates/LrCalculator/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
2026/06/04 17:52:37 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/06/04 17:52:37 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780523306310_220466.log: Copied (new)
2026/06/04 17:52:38 INFO  : Logs_Intermediates/LrCalculator/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/LrCalculator-20260603223440.log: Copied (new)
2026/06/04 17:52:38 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780523306302_220466.log: Copied (new)
2026/06/04 17:52:38 INFO  : Logs_Intermediates/DnaCoverageReports/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna.gene_cov_report.tsv: Copied (new)
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2026/06/04 17:52:38 INFO  : Logs_Intermediates/nextflow_work_logs/1b/064eac8c209ad3a505919a71cf515a/.command.out: Copied (new)
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2026/06/04 17:52:38 INFO  : ica_logs/out/Logs_Intermediates/Gis/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780525540137_291203.log: Copied (new)
2026/06/04 17:52:38 INFO  : Logs_Intermediates/nextflow_work_logs/1b/064eac8c209ad3a505919a71cf515a/.command.run: Copied (new)
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2026/06/04 17:52:38 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/22/1a9f6f3564aef8fac9bdd7bbe1c0b0/.command.err: Copied (new)
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2026/06/04 17:52:38 INFO  : Logs_Intermediates/LrAnnotation/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603224251.log: Copied (new)
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2026/06/04 17:52:38 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/22/1a9f6f3564aef8fac9bdd7bbe1c0b0/.command.sh: Copied (new)
2026/06/04 17:52:38 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/22/1a9f6f3564aef8fac9bdd7bbe1c0b0/.command.run: Copied (new)
2026/06/04 17:52:38 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/22/1a9f6f3564aef8fac9bdd7bbe1c0b0/.exitcode: Copied (new)
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2026/06/04 17:52:38 INFO  : Logs_Intermediates/FastqGeneration/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna_S15_L001_R1_001.fastq.gz: Multi-thread Copied (new)
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2026/06/04 17:52:39 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/22/2143cb231de1efa1ebb9e2527bd794/.command.err: Copied (new)
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2026/06/04 17:52:39 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/22/2143cb231de1efa1ebb9e2527bd794/.command.log: Copied (new)
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2026/06/04 17:52:39 INFO  : Logs_Intermediates/Contamination/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna_contamination.json: Copied (new)
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2026/06/04 17:52:39 INFO  : Logs_Intermediates/Contamination/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/Spoiler-20260603225239.log: Copied (new)
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2026/06/04 17:52:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.bam.md5sum: Copied (new)
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2026/06/04 17:52:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:52:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/06/04 17:52:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
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2026/06/04 17:52:39 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna.combined.counts.txt.gz: Copied (new)
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2026/06/04 17:52:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
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2026/06/04 17:52:40 INFO  : Logs_Intermediates/DnaDragenCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.gc_metrics.csv: Copied (new)
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2026/06/04 17:52:40 INFO  : Logs_Intermediates/DnaDragenCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
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2026/06/04 17:52:40 INFO  : Logs_Intermediates/DnaDragenCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
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2026/06/04 17:52:40 INFO  : Logs_Intermediates/DnaDragenCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
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2026/06/04 17:52:40 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/21/52931c42698052f73d5489b5355205/SampleAnalysisResults/659_dot-T1-TDNA-1_HLNLMDRX7_1_SARJeantLog-20260603230610.log: Copied (new)
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2026/06/04 17:52:40 INFO  : Logs_Intermediates/DnaDragenCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:52:40 INFO  : Logs_Intermediates/DnaDragenCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:52:40 INFO  : Logs_Intermediates/DnaDragenCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/06/04 17:52:40 INFO  : Logs_Intermediates/DnaDragenCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/06/04 17:52:40 INFO  : Logs_Intermediates/DnaDragenCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/06/04 17:52:41 INFO  : Logs_Intermediates/DnaDragenCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
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2026/06/04 17:52:41 INFO  : Logs_Intermediates/DnaDragenCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
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2026/06/04 17:52:41 INFO  : Logs_Intermediates/DnaDragenCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
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2026/06/04 17:52:41 INFO  : Logs_Intermediates/DnaDragenCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_hist.csv: Copied (new)
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2026/06/04 17:52:41 INFO  : Logs_Intermediates/DnaDragenCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780519107043_79667.log: Copied (new)
2026/06/04 17:52:41 INFO  : Logs_Intermediates/Annotation/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:52:41 INFO  : Logs_Intermediates/Annotation/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603223218.log: Copied (new)
2026/06/04 17:52:41 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/26/17b84b28687faadf2600d7e207cbe6/.command.begin: Copied (new)
2026/06/04 17:52:41 INFO  : Logs_Intermediates/DnaDragenCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:52:41 INFO  : Logs_Intermediates/FastqGeneration/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna_S15_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:52:41 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/26/17b84b28687faadf2600d7e207cbe6/.command.err: Copied (new)
2026/06/04 17:52:41 INFO  : Logs_Intermediates/DnaDragenCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780519107059_79667.log: Copied (new)
2026/06/04 17:52:41 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/26/17b84b28687faadf2600d7e207cbe6/.command.log: Copied (new)
2026/06/04 17:52:41 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/26/17b84b28687faadf2600d7e207cbe6/.command.sh: Copied (new)
2026/06/04 17:52:42 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/26/17b84b28687faadf2600d7e207cbe6/.command.trace: Copied (new)
2026/06/04 17:52:42 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/26/17b84b28687faadf2600d7e207cbe6/.exitcode: Copied (new)
2026/06/04 17:52:42 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/26/17b84b28687faadf2600d7e207cbe6/.command.run: Copied (new)
2026/06/04 17:52:42 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/26/17b84b28687faadf2600d7e207cbe6/.command.out: Copied (new)
2026/06/04 17:52:42 INFO  : Logs_Intermediates/Gis/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna.baf.bedgraph.gz.gzi: Copied (new)
2026/06/04 17:52:42 INFO  : Logs_Intermediates/Gis/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:52:42 INFO  : Logs_Intermediates/Gis/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:52:42 INFO  : Logs_Intermediates/Gis/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna.abcn_annotated.vcf: Copied (new)
2026/06/04 17:52:42 INFO  : Logs_Intermediates/Gis/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna.abcn_genes.tsv: Copied (new)
2026/06/04 17:52:42 INFO  : Logs_Intermediates/Gis/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna.baf.bedgraph.gz: Copied (new)
2026/06/04 17:52:42 INFO  : Logs_Intermediates/Gis/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna.gis.json: Copied (new)
2026/06/04 17:52:42 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/3d/d376705b7e9aeab9c51b74eefe9e57/.command.begin: Copied (new)
2026/06/04 17:52:42 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/3d/d376705b7e9aeab9c51b74eefe9e57/.command.env: Copied (new)
2026/06/04 17:52:42 INFO  : Logs_Intermediates/Gis/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780526116359_311532.log: Copied (new)
2026/06/04 17:52:42 INFO  : Logs_Intermediates/Gis/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780526116352_311532.log: Copied (new)
2026/06/04 17:52:42 INFO  : Logs_Intermediates/Gis/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna_bAllele.tsv: Copied (new)
2026/06/04 17:52:42 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/3d/d376705b7e9aeab9c51b74eefe9e57/.command.err: Copied (new)
2026/06/04 17:52:42 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/3d/d376705b7e9aeab9c51b74eefe9e57/.command.out: Copied (new)
2026/06/04 17:52:42 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/3d/d376705b7e9aeab9c51b74eefe9e57/.command.run: Copied (new)
2026/06/04 17:52:42 INFO  : Logs_Intermediates/Gis/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna_logRatio.original.tsv: Copied (new)
2026/06/04 17:52:42 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/3d/d376705b7e9aeab9c51b74eefe9e57/.command.sh: Copied (new)
2026/06/04 17:52:42 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/3d/d376705b7e9aeab9c51b74eefe9e57/.command.log: Copied (new)
2026/06/04 17:52:42 INFO  : Logs_Intermediates/Gis/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna_raw.tsv: Copied (new)
2026/06/04 17:52:42 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/3d/d376705b7e9aeab9c51b74eefe9e57/.exitcode: Copied (new)
2026/06/04 17:52:42 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/3d/d376705b7e9aeab9c51b74eefe9e57/.command.trace: Copied (new)
2026/06/04 17:52:42 INFO  : Logs_Intermediates/Gis/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna_logRatio.tsv: Copied (new)
2026/06/04 17:52:42 INFO  : Logs_Intermediates/MetricsOutput/659_dyd-T1-TDNA-1_HLNLMDRX7_1/659_dyd-T1-TDNA-1_HLNLMDRX7_1_MetricsOutput.tsv: Copied (new)
2026/06/04 17:52:42 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/LrCalculator-20260603223438.log: Copied (new)
2026/06/04 17:52:42 INFO  : Logs_Intermediates/Tmb/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:52:42 INFO  : Logs_Intermediates/Tmb/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:52:42 INFO  : Logs_Intermediates/Tmb/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:52:42 INFO  : Logs_Intermediates/Tmb/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:52:42 INFO  : Logs_Intermediates/Tmb/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna.tmb.metrics.csv: Copied (new)
2026/06/04 17:52:43 INFO  : Logs_Intermediates/Tmb/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:52:43 INFO  : Logs_Intermediates/Tmb/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna.tmb.trace.tsv: Copied (new)
2026/06/04 17:52:43 INFO  : Logs_Intermediates/Tmb/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:52:43 INFO  : Logs_Intermediates/Tmb/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603202951.log: Copied (new)
2026/06/04 17:52:43 INFO  : Logs_Intermediates/Tmb/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780526134088_314794.log: Copied (new)
2026/06/04 17:52:43 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780525603194_292934.log: Copied (new)
2026/06/04 17:52:43 INFO  : Logs_Intermediates/Tmb/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780526134080_314794.log: Copied (new)
2026/06/04 17:52:43 INFO  : Logs_Intermediates/Annotation/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_Annotated.json.gz: Copied (new)
2026/06/04 17:52:43 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780525603186_292934.log: Copied (new)
2026/06/04 17:52:43 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/29/bad9e7bcb77837c1a45c6eebfa1335/.command.begin: Copied (new)
2026/06/04 17:52:43 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/659_bhQ-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603223439.log: Copied (new)
2026/06/04 17:52:43 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/29/bad9e7bcb77837c1a45c6eebfa1335/.command.err: Copied (new)
2026/06/04 17:52:43 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/29/bad9e7bcb77837c1a45c6eebfa1335/.command.log: Copied (new)
2026/06/04 17:52:43 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/29/bad9e7bcb77837c1a45c6eebfa1335/.command.out: Copied (new)
2026/06/04 17:52:43 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/29/bad9e7bcb77837c1a45c6eebfa1335/.command.run: Copied (new)
2026/06/04 17:52:43 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/29/bad9e7bcb77837c1a45c6eebfa1335/.command.sh: Copied (new)
2026/06/04 17:52:43 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/29/bad9e7bcb77837c1a45c6eebfa1335/.exitcode: Copied (new)
2026/06/04 17:52:43 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/29/bad9e7bcb77837c1a45c6eebfa1335/.command.trace: Copied (new)
2026/06/04 17:52:43 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/26/c73b8526c6efaff86f53f957fae41e/.command.begin: Copied (new)
2026/06/04 17:52:43 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/26/c73b8526c6efaff86f53f957fae41e/.command.err: Copied (new)
2026/06/04 17:52:43 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/26/c73b8526c6efaff86f53f957fae41e/.command.out: Copied (new)
2026/06/04 17:52:43 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/26/c73b8526c6efaff86f53f957fae41e/.command.log: Copied (new)
2026/06/04 17:52:43 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/26/c73b8526c6efaff86f53f957fae41e/.command.run: Copied (new)
2026/06/04 17:52:43 INFO  : Logs_Intermediates/Tmb/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz: Copied (new)
2026/06/04 17:52:43 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/26/c73b8526c6efaff86f53f957fae41e/.command.sh: Copied (new)
2026/06/04 17:52:44 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/26/c73b8526c6efaff86f53f957fae41e/.exitcode: Copied (new)
2026/06/04 17:52:44 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/26/c73b8526c6efaff86f53f957fae41e/gen_coverage_reports.log: Copied (new)
2026/06/04 17:52:44 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/17/2c0d2daba1030a39e3664af1e04d4e/DnaDragenExonCnvCaller/dragen_run_1780523122684_212875.log: Copied (new)
2026/06/04 17:52:44 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/26/c73b8526c6efaff86f53f957fae41e/.command.trace: Copied (new)
2026/06/04 17:52:44 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/17/2c0d2daba1030a39e3664af1e04d4e/DnaDragenExonCnvCaller/dragen_syslog_1780523122676_212875.log: Copied (new)
2026/06/04 17:52:44 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:52:44 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:52:44 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:52:44 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:52:44 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:52:44 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:52:44 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:52:44 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:52:44 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:52:44 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:52:44 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/06/04 17:52:44 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:52:44 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:52:44 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:52:44 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/06/04 17:52:44 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:52:44 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780525949332_305022.log: Copied (new)
2026/06/04 17:52:44 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780525949324_305022.log: Copied (new)
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2026/06/04 17:52:48 INFO  : Logs_Intermediates/DnaDragenCaller/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
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2026/06/04 17:52:48 INFO  : Logs_Intermediates/DnaDragenCaller/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna.vc_metrics.csv: Copied (new)
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2026/06/04 17:52:48 INFO  : Logs_Intermediates/DnaDragenCaller/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/06/04 17:52:48 INFO  : Logs_Intermediates/DnaDragenCaller/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions.txt: Copied (new)
2026/06/04 17:52:48 INFO  : Logs_Intermediates/DnaDragenCaller/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/06/04 17:52:48 INFO  : ica_logs/out/Logs_Intermediates/DnaCoverageReports/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/06/04 17:52:48 INFO  : Logs_Intermediates/DnaDragenCaller/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780518051396_46954.log: Copied (new)
2026/06/04 17:52:48 INFO  : Logs_Intermediates/LrCalculator/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/LrCalculator-20260603223926.log: Copied (new)
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2026/06/04 17:52:48 INFO  : Logs_Intermediates/nextflow_work_logs/1c/a2c17218953218b43b00ff22078a9d/.command.err: Copied (new)
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2026/06/04 17:52:48 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:52:48 INFO  : ica_logs/out/Logs_Intermediates/Contamination/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/Spoiler-20260603225241.log: Copied (new)
2026/06/04 17:52:48 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:52:48 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:52:48 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:52:48 INFO  : Logs_Intermediates/CombinedVariantOutput/659_dyd-T1-TDNA-1_HLNLMDRX7_1/659_dyd-T1-TDNA-1_HLNLMDRX7_1_CombinedVariantOutput.tsv: Copied (new)
2026/06/04 17:52:49 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:52:49 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:52:49 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:52:49 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:52:49 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:52:49 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:52:49 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:52:49 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:52:49 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/06/04 17:52:49 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:52:49 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:52:49 INFO  : ica_logs/out/Logs_Intermediates/Gis/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780522901965_207094.log: Copied (new)
2026/06/04 17:52:49 INFO  : ica_logs/out/Logs_Intermediates/Gis/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780522901958_207094.log: Copied (new)
2026/06/04 17:52:49 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/06/04 17:52:49 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780524026451_241937.log: Copied (new)
2026/06/04 17:52:49 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780524026459_241937.log: Copied (new)
2026/06/04 17:52:49 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603210710.log: Copied (new)
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2026/06/04 17:52:49 INFO  : Logs_Intermediates/Annotation/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:52:49 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_32-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780526013098_312645.log: Copied (new)
2026/06/04 17:52:49 INFO  : Logs_Intermediates/Annotation/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603223536.log: Copied (new)
2026/06/04 17:52:49 INFO  : Logs_Intermediates/DnaDragenCaller/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:52:49 INFO  : Logs_Intermediates/Contamination/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna_contamination.json: Copied (new)
2026/06/04 17:52:49 INFO  : Logs_Intermediates/Contamination/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/Spoiler-20260603225605.log: Copied (new)
2026/06/04 17:52:49 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/14/7178db22487a4fdcaa14a40111678c/.command.begin: Copied (new)
2026/06/04 17:52:49 INFO  : Logs_Intermediates/CombinedVariantOutput/659_eJY-T1-TDNA-1_HLNLMDRX7_1/659_eJY-T1-TDNA-1_HLNLMDRX7_1_CombinedVariantOutput.tsv: Copied (new)
2026/06/04 17:52:49 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/14/7178db22487a4fdcaa14a40111678c/.command.log: Copied (new)
2026/06/04 17:52:50 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/14/7178db22487a4fdcaa14a40111678c/.command.run: Copied (new)
2026/06/04 17:52:50 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/14/7178db22487a4fdcaa14a40111678c/.command.err: Copied (new)
2026/06/04 17:52:50 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/14/7178db22487a4fdcaa14a40111678c/.command.out: Copied (new)
2026/06/04 17:52:50 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/14/7178db22487a4fdcaa14a40111678c/.command.sh: Copied (new)
2026/06/04 17:52:50 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/14/7178db22487a4fdcaa14a40111678c/.exitcode: Copied (new)
2026/06/04 17:52:50 INFO  : Logs_Intermediates/LrAnnotation/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna_DNAExonCNV_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:52:50 INFO  : Logs_Intermediates/LrAnnotation/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna_DNAExonCNV_Annotated.json.gz: Copied (new)
2026/06/04 17:52:50 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/14/7178db22487a4fdcaa14a40111678c/.command.trace: Copied (new)
2026/06/04 17:52:50 INFO  : Logs_Intermediates/LrAnnotation/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603224249.log: Copied (new)
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2026/06/04 17:52:50 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/27/c3031386b70c47a79bd6e406aa2a84/.command.out: Copied (new)
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2026/06/04 17:52:50 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/27/c3031386b70c47a79bd6e406aa2a84/.command.err: Copied (new)
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2026/06/04 17:52:50 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/27/c3031386b70c47a79bd6e406aa2a84/.command.sh: Copied (new)
2026/06/04 17:52:50 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/27/c3031386b70c47a79bd6e406aa2a84/.exitcode: Copied (new)
2026/06/04 17:52:50 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/45/4f1bccdbc5000a41cb3e488bc6131d/.command.begin: Copied (new)
2026/06/04 17:52:50 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/27/c3031386b70c47a79bd6e406aa2a84/.command.trace: Copied (new)
2026/06/04 17:52:50 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.combined.counts.txt.gz: Copied (new)
2026/06/04 17:52:50 INFO  : Logs_Intermediates/FastqGeneration/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna_S15_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:52:50 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/45/4f1bccdbc5000a41cb3e488bc6131d/.command.err: Copied (new)
2026/06/04 17:52:50 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/45/4f1bccdbc5000a41cb3e488bc6131d/.exitcode: Copied (new)
2026/06/04 17:52:50 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/45/4f1bccdbc5000a41cb3e488bc6131d/.command.run: Copied (new)
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2026/06/04 17:52:50 INFO  : Logs_Intermediates/Tmb/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:52:50 INFO  : Logs_Intermediates/Tmb/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:52:50 INFO  : Logs_Intermediates/Tmb/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:52:50 INFO  : Logs_Intermediates/Tmb/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
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2026/06/04 17:52:50 INFO  : Logs_Intermediates/Tmb/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:52:50 INFO  : Logs_Intermediates/Tmb/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna.tmb.trace.tsv: Copied (new)
2026/06/04 17:52:51 INFO  : Logs_Intermediates/Tmb/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:52:51 INFO  : Logs_Intermediates/Tmb/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603212928.log: Copied (new)
2026/06/04 17:52:51 INFO  : Logs_Intermediates/Tmb/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780526561137_328918.log: Copied (new)
2026/06/04 17:52:51 INFO  : Logs_Intermediates/Tmb/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780526561145_328918.log: Copied (new)
2026/06/04 17:52:51 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/27/c1e7227d8cdae10b7be95a8bc094e9/.command.begin: Copied (new)
2026/06/04 17:52:51 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/27/c1e7227d8cdae10b7be95a8bc094e9/.command.err: Copied (new)
2026/06/04 17:52:51 INFO  : Logs_Intermediates/DnaDragenCaller/1173_CPJ-T1-TDNA-01_HLNLMDRX7_1_dna/1173_CPJ-T1-TDNA-01_HLNLMDRX7_1_dna.bam: Multi-thread Copied (new)
2026/06/04 17:52:51 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/27/c1e7227d8cdae10b7be95a8bc094e9/.command.log: Copied (new)
2026/06/04 17:52:51 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/27/c1e7227d8cdae10b7be95a8bc094e9/.command.out: Copied (new)
2026/06/04 17:52:51 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/27/c1e7227d8cdae10b7be95a8bc094e9/.command.run: Copied (new)
2026/06/04 17:52:51 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/27/c1e7227d8cdae10b7be95a8bc094e9/.command.trace: Copied (new)
2026/06/04 17:52:51 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/27/c1e7227d8cdae10b7be95a8bc094e9/.exitcode: Copied (new)
2026/06/04 17:52:51 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/27/c1e7227d8cdae10b7be95a8bc094e9/.command.sh: Copied (new)
2026/06/04 17:52:51 INFO  : Logs_Intermediates/Gis/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:52:51 INFO  : Logs_Intermediates/Gis/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.abcn_genes.tsv: Copied (new)
2026/06/04 17:52:51 INFO  : Logs_Intermediates/Gis/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.baf.bedgraph.gz.gzi: Copied (new)
2026/06/04 17:52:51 INFO  : Logs_Intermediates/Gis/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.abcn_annotated.vcf: Copied (new)
2026/06/04 17:52:51 INFO  : Logs_Intermediates/Gis/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:52:51 INFO  : Logs_Intermediates/Gis/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.gis.json: Copied (new)
2026/06/04 17:52:51 INFO  : Logs_Intermediates/Gis/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.baf.bedgraph.gz: Copied (new)
2026/06/04 17:52:51 INFO  : Logs_Intermediates/Gis/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna_bAllele.tsv: Copied (new)
2026/06/04 17:52:52 INFO  : 
Transferred:   	  240.001 GiB / 409.914 GiB, 59%, 1.336 GiB/s, ETA 2m7s
Transferred:         5946 / 14718, 40%
Elapsed time:       3m0.0s
Transferring:
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 91% /4.929Gi, 26.762Mi/s, 15s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 88% /5.160Gi, 21.188Mi/s, 28s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 85% /4.711Gi, 22.125Mi/s, 31s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 85% /4.999Gi, 27.111Mi/s, 28s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 73% /5.417Gi, 27.431Mi/s, 52s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 89% /3.966Gi, 20.875Mi/s, 19s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 71% /4.751Gi, 26.554Mi/s, 53s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 66% /5.229Gi, 24.531Mi/s, 1m13s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 62% /4.573Gi, 22.976Mi/s, 1m15s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 64% /4.391Gi, 28.512Mi/s, 56s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 51% /5.364Gi, 23.205Mi/s, 1m55s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 48% /4.924Gi, 28.213Mi/s, 1m32s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 44% /5.095Gi, 24.805Mi/s, 1m57s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 40% /4.297Gi, 23.205Mi/s, 1m52s
 * Logs_Intermediates/Fas…5_L001_R1_001.fastq.gz: 78% /1.956Gi, 19.650Mi/s, 22s
 * Logs_Intermediates/Fas…5_L001_R2_001.fastq.gz: 79% /2.014Gi, 20.179Mi/s, 21s
 * Logs_Intermediates/Fas…5_L002_R1_001.fastq.gz: 80% /1.970Gi, 26.536Mi/s, 14s
 * Logs_Intermediates/Fas…5_L002_R2_001.fastq.gz: 71% /2.031Gi, 27.520Mi/s, 21s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 26% /4.893Gi, 22.052Mi/s, 2m46s
 * Logs_Intermediates/Fas…3_L001_R1_001.fastq.gz: 63% /1.880Gi, 26.669Mi/s, 26s
 * Logs_Intermediates/Fas…3_L001_R2_001.fastq.gz: 54% /1.939Gi, 15.830Mi/s, 56s
 * Logs_Intermediates/Fas…3_L002_R1_001.fastq.gz: 73% /1.904Gi, 26.714Mi/s, 19s
 * Logs_Intermediates/Fas…3_L002_R2_001.fastq.gz: 57% /1.967Gi, 25.434Mi/s, 33s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 25% /4.616Gi, 24.126Mi/s, 2m26s
 * Logs_Intermediates/Fas…8_L001_R1_001.fastq.gz: 62% /1.739Gi, 22.276Mi/s, 29s
 * Logs_Intermediates/Fas…8_L001_R2_001.fastq.gz: 65% /1.809Gi, 27.419Mi/s, 23s
 * Logs_Intermediates/Fas…8_L002_R1_001.fastq.gz: 68% /1.745Gi, 28.346Mi/s, 20s
 * Logs_Intermediates/Fas…8_L002_R2_001.fastq.gz: 61% /1.818Gi, 22.637Mi/s, 31s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 19% /5.032Gi, 22.789Mi/s, 3m2s
 * Logs_Intermediates/Fas…6_L001_R1_001.fastq.gz: 52% /2.133Gi, 29.628Mi/s, 34s
 * Logs_Intermediates/Fas…6_L001_R2_001.fastq.gz: 55% /2.124Gi, 32.579Mi/s, 29s
 * Logs_Intermediates/Fas…6_L002_R1_001.fastq.gz: 36% /2.152Gi, 23.565Mi/s, 59s
 * Logs_Intermediates/Fas…6_L002_R2_001.fastq.gz: 42% /2.138Gi, 23.898Mi/s, 52s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 14% /5.053Gi, 20.171Mi/s, 3m38s
 * Logs_Intermediates/Fas…7_L001_R1_001.fastq.gz: 42% /1.709Gi, 23.623Mi/s, 42s
 * Logs_Intermediates/Fas…7_L001_R2_001.fastq.gz: 49% /1.759Gi, 25.485Mi/s, 35s
 * Logs_Intermediates/Fas…7_L002_R1_001.fastq.gz: 47% /1.724Gi, 25.031Mi/s, 37s
 * Logs_Intermediates/Fas…7_L002_R2_001.fastq.gz: 45% /1.776Gi, 24.588Mi/s, 40s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 13% /5.199Gi, 22.480Mi/s, 3m24s
 * Logs_Intermediates/Fas…9_L001_R1_001.fastq.gz: 25% /1.852Gi, 18.890Mi/s, 1m14s
 * Logs_Intermediates/Fas…9_L001_R2_001.fastq.gz: 30% /1.823Gi, 21.704Mi/s, 59s
 * Logs_Intermediates/Fas…9_L002_R1_001.fastq.gz: 32% /1.820Gi, 22.578Mi/s, 55s
 * Logs_Intermediates/Fas…9_L002_R2_001.fastq.gz: 39% /1.790Gi, 30.044Mi/s, 37s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 12% /4.565Gi, 23.971Mi/s, 2m50s
 * Logs_Intermediates/Fas…7_L001_R1_001.fastq.gz: 22% /1.842Gi, 23.467Mi/s, 1m2s
 * Logs_Intermediates/Fas…7_L001_R2_001.fastq.gz: 14% /1.899Gi, 19.200Mi/s, 1m26s
 * Logs_Intermediates/Fas…7_L002_R1_001.fastq.gz: 20% /1.858Gi, 21.333Mi/s, 1m11s
 * Logs_Intermediates/Fas…7_L002_R2_001.fastq.gz: 24% /1.918Gi, 32.000Mi/s, 46s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam:  5% /5.390Gi, 26.667Mi/s, 3m14s
 * Logs_Intermediates/Fas…1_L001_R1_001.fastq.gz: 11% /1.918Gi, 24.889Mi/s, 1m9s
 * Logs_Intermediates/Fas…1_L001_R2_001.fastq.gz: 10% /1.784Gi, 17.778Mi/s, 1m31s
 * Logs_Intermediates/Fas…1_L002_R1_001.fastq.gz:  6% /1.918Gi, 14.222Mi/s, 2m9s
 * Logs_Intermediates/Fas…1_L002_R2_001.fastq.gz: 10% /1.777Gi, 21.333Mi/s, 1m16s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam:  4% /4.435Gi, 32.000Mi/s, 2m15s
 * ica_logs/work/67/bf96a…Log-20260603230817.log: 93% /68.203Mi, 19.332Mi/s, 0s
 * Logs_Intermediates/Ann…ants_Annotated.json.gz: 82% /6.069Mi, 1.998Mi/s, 0s
 * ica_logs/work/67/bf96a…88bc6131d/.command.log: 54% /65.623Mi, 25.995Mi/s, 1s
 * ica_logs/work/67/bf96a…88bc6131d/.command.out:  6% /65.622Mi, 2.996Mi/s, 20s
 * Logs_Intermediates/Tmb…_TMB_Annotated.json.gz:100% /20.178Mi, 18.996Mi/s, 0s
 * Logs_Intermediates/Gis…_logRatio.original.tsv: 26% /1.870Mi, 0/s, -
 * Logs_Intermediates/Gis…RX7_1_dna_logRatio.tsv: 43% /2.289Mi, 0/s, -
 * Logs_Intermediates/Gis…LNLMDRX7_1_dna_raw.tsv: 36% /2.734Mi, 0/s, -
 * Logs_Intermediates/Gis…80525289127_284264.log: transferring
 * Logs_Intermediates/Gis…80525289120_284264.log: transferring

2026/06/04 17:52:52 INFO  : Logs_Intermediates/Tmb/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz: Copied (new)
2026/06/04 17:52:52 INFO  : Logs_Intermediates/Gis/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780525289120_284264.log: Copied (new)
2026/06/04 17:52:52 INFO  : Logs_Intermediates/Gis/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna_logRatio.tsv: Copied (new)
2026/06/04 17:52:52 INFO  : Logs_Intermediates/Gis/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780525289127_284264.log: Copied (new)
2026/06/04 17:52:52 INFO  : Logs_Intermediates/Annotation/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_Annotated.json.gz: Copied (new)
2026/06/04 17:52:52 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/30/1166b23d996c17453d4c852b76cf22/SampleAnalysisResults/659_b73-T1-TDNA-1_HLNLMDRX7_1_SARJeantLog-20260603230817.log: Copied (new)
2026/06/04 17:52:52 INFO  : Logs_Intermediates/Gis/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna_raw.tsv: Copied (new)
2026/06/04 17:52:52 INFO  : Logs_Intermediates/MetricsOutput/659_eJY-T1-TDNA-1_HLNLMDRX7_1/659_eJY-T1-TDNA-1_HLNLMDRX7_1_MetricsOutput.tsv: Copied (new)
2026/06/04 17:52:52 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780525312537_284612.log: Copied (new)
2026/06/04 17:52:52 INFO  : ica_logs/out/Logs_Intermediates/Annotation/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603223925.log: Copied (new)
2026/06/04 17:52:52 INFO  : Logs_Intermediates/Gis/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna_logRatio.original.tsv: Copied (new)
2026/06/04 17:52:52 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/LrCalculator-20260603224250.log: Copied (new)
2026/06/04 17:52:52 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603223926.log: Copied (new)
2026/06/04 17:52:52 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780525312529_284612.log: Copied (new)
2026/06/04 17:52:52 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/22/eeb9146b3c49b6c6706c072ffdc8c3/.command.begin: Copied (new)
2026/06/04 17:52:52 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/22/eeb9146b3c49b6c6706c072ffdc8c3/.command.err: Copied (new)
2026/06/04 17:52:52 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/22/eeb9146b3c49b6c6706c072ffdc8c3/.command.log: Copied (new)
2026/06/04 17:52:52 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/22/eeb9146b3c49b6c6706c072ffdc8c3/.command.out: Copied (new)
2026/06/04 17:52:52 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/22/eeb9146b3c49b6c6706c072ffdc8c3/.command.run: Copied (new)
2026/06/04 17:52:52 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/22/eeb9146b3c49b6c6706c072ffdc8c3/.command.sh: Copied (new)
2026/06/04 17:52:52 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/22/eeb9146b3c49b6c6706c072ffdc8c3/.exitcode: Copied (new)
2026/06/04 17:52:53 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/22/eeb9146b3c49b6c6706c072ffdc8c3/.command.trace: Copied (new)
2026/06/04 17:52:53 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:52:53 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/22/eeb9146b3c49b6c6706c072ffdc8c3/Nirvana-20260603224539.log: Copied (new)
2026/06/04 17:52:53 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:52:53 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:52:53 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/34/881d84bed9313a2498994b6683c4cb/.command.begin: Copied (new)
2026/06/04 17:52:53 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/34/881d84bed9313a2498994b6683c4cb/.command.err: Copied (new)
2026/06/04 17:52:53 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780517370122_7324.log: Copied (new)
2026/06/04 17:52:53 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/34/881d84bed9313a2498994b6683c4cb/.command.log: Copied (new)
2026/06/04 17:52:53 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/45/4f1bccdbc5000a41cb3e488bc6131d/.command.log: Copied (new)
2026/06/04 17:52:53 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/34/881d84bed9313a2498994b6683c4cb/.command.out: Copied (new)
2026/06/04 17:52:53 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/34/881d84bed9313a2498994b6683c4cb/.command.run: Copied (new)
2026/06/04 17:52:53 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/34/881d84bed9313a2498994b6683c4cb/.exitcode: Copied (new)
2026/06/04 17:52:53 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/34/881d84bed9313a2498994b6683c4cb/.command.sh: Copied (new)
2026/06/04 17:52:53 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/34/881d84bed9313a2498994b6683c4cb/.command.trace: Copied (new)
2026/06/04 17:52:53 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780517370138_7324.log: Copied (new)
2026/06/04 17:52:53 INFO  : Logs_Intermediates/nextflow_work_logs/1d/7eb94d3f8eb8bd5040a5366549eae6/.command.err: Copied (new)
2026/06/04 17:52:53 INFO  : Logs_Intermediates/nextflow_work_logs/1d/7eb94d3f8eb8bd5040a5366549eae6/.command.out: Copied (new)
2026/06/04 17:52:53 INFO  : Logs_Intermediates/nextflow_work_logs/1d/7eb94d3f8eb8bd5040a5366549eae6/.command.log: Copied (new)
2026/06/04 17:52:53 INFO  : Logs_Intermediates/nextflow_work_logs/1d/7eb94d3f8eb8bd5040a5366549eae6/.command.sh: Copied (new)
2026/06/04 17:52:53 INFO  : Logs_Intermediates/nextflow_work_logs/1d/7eb94d3f8eb8bd5040a5366549eae6/.command.run: Copied (new)
2026/06/04 17:52:53 INFO  : Logs_Intermediates/nextflow_work_logs/1b/c91599a76afa34cd8eb61584589514/.command.err: Copied (new)
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2026/06/04 17:52:55 INFO  : Logs_Intermediates/DnaCoverageReports/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/gen_coverage_reports.log: Copied (new)
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2026/06/04 17:52:56 INFO  : Logs_Intermediates/Annotation/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603224244.log: Copied (new)
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2026/06/04 17:52:56 INFO  : Logs_Intermediates/Contamination/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna_contamination.json: Copied (new)
2026/06/04 17:52:56 INFO  : Logs_Intermediates/Contamination/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/Spoiler-20260603225603.log: Copied (new)
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2026/06/04 17:52:57 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.combined.counts.txt.gz: Copied (new)
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2026/06/04 17:53:04 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/47/6e63b32e3d82f67361fbaefb635d83/.exitcode: Copied (new)
2026/06/04 17:53:04 INFO  : Logs_Intermediates/CombinedVariantOutput/659_eMB-T1-TDNA-1_HLNLMDRX7_1/659_eMB-T1-TDNA-1_HLNLMDRX7_1_CombinedVariantOutput.tsv: Copied (new)
2026/06/04 17:53:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
2026/06/04 17:53:05 INFO  : Logs_Intermediates/Gis/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:53:05 INFO  : Logs_Intermediates/Gis/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.abcn_genes.tsv: Copied (new)
2026/06/04 17:53:05 INFO  : Logs_Intermediates/Gis/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.abcn_annotated.vcf: Copied (new)
2026/06/04 17:53:05 INFO  : Logs_Intermediates/Gis/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.baf.bedgraph.gz: Copied (new)
2026/06/04 17:53:05 INFO  : Logs_Intermediates/Gis/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.baf.bedgraph.gz.gzi: Copied (new)
2026/06/04 17:53:05 INFO  : Logs_Intermediates/Gis/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:53:05 INFO  : Logs_Intermediates/Gis/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.gis.json: Copied (new)
2026/06/04 17:53:05 INFO  : Logs_Intermediates/Gis/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna_bAllele.tsv: Copied (new)
2026/06/04 17:53:06 INFO  : Logs_Intermediates/Gis/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna_logRatio.original.tsv: Copied (new)
2026/06/04 17:53:06 INFO  : Logs_Intermediates/DnaDragenCaller/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna.bam: Multi-thread Copied (new)
2026/06/04 17:53:06 INFO  : Logs_Intermediates/Gis/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna_logRatio.tsv: Copied (new)
2026/06/04 17:53:06 INFO  : Logs_Intermediates/Gis/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780524538270_261629.log: Copied (new)
2026/06/04 17:53:06 INFO  : Logs_Intermediates/MetricsOutput/659_eMB-T1-TDNA-1_HLNLMDRX7_1/659_eMB-T1-TDNA-1_HLNLMDRX7_1_MetricsOutput.tsv: Copied (new)
2026/06/04 17:53:06 INFO  : Logs_Intermediates/Gis/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780524538263_261629.log: Copied (new)
2026/06/04 17:53:06 INFO  : Logs_Intermediates/Gis/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna_raw.tsv: Copied (new)
2026/06/04 17:53:06 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/25/4009214082eb7207b5a2dabcf32c98/.command.begin: Copied (new)
2026/06/04 17:53:06 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/25/4009214082eb7207b5a2dabcf32c98/.command.err: Copied (new)
2026/06/04 17:53:06 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/25/4009214082eb7207b5a2dabcf32c98/.command.out: Copied (new)
2026/06/04 17:53:06 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/25/4009214082eb7207b5a2dabcf32c98/.command.run: Copied (new)
2026/06/04 17:53:06 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/25/4009214082eb7207b5a2dabcf32c98/.command.log: Copied (new)
2026/06/04 17:53:06 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/25/4009214082eb7207b5a2dabcf32c98/.command.sh: Copied (new)
2026/06/04 17:53:06 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/25/4009214082eb7207b5a2dabcf32c98/.exitcode: Copied (new)
2026/06/04 17:53:06 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/25/4009214082eb7207b5a2dabcf32c98/.command.trace: Copied (new)
2026/06/04 17:53:06 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/22/86b34ed3cd10986760e3af75d16c36/.command.err: Copied (new)
2026/06/04 17:53:07 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/22/86b34ed3cd10986760e3af75d16c36/.command.begin: Copied (new)
2026/06/04 17:53:07 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/25/4009214082eb7207b5a2dabcf32c98/gen_coverage_reports.log: Copied (new)
2026/06/04 17:53:07 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/22/86b34ed3cd10986760e3af75d16c36/.command.out: Copied (new)
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2026/06/04 17:53:07 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/22/86b34ed3cd10986760e3af75d16c36/.command.run: Copied (new)
2026/06/04 17:53:07 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/22/86b34ed3cd10986760e3af75d16c36/.command.trace: Copied (new)
2026/06/04 17:53:07 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/22/86b34ed3cd10986760e3af75d16c36/.exitcode: Copied (new)
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2026/06/04 17:53:07 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/22/86b34ed3cd10986760e3af75d16c36/Nirvana-20260603223926.log: Copied (new)
2026/06/04 17:53:07 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/LrCalculator-20260603223925.log: Copied (new)
2026/06/04 17:53:07 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/45/f95b93c6ff8e70046c4184b775beef/.command.begin: Copied (new)
2026/06/04 17:53:07 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/45/f95b93c6ff8e70046c4184b775beef/.command.err: Copied (new)
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2026/06/04 17:53:07 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/45/f95b93c6ff8e70046c4184b775beef/.command.out: Copied (new)
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2026/06/04 17:53:07 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/45/f95b93c6ff8e70046c4184b775beef/.command.run: Copied (new)
2026/06/04 17:53:07 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/45/f95b93c6ff8e70046c4184b775beef/.command.sh: Copied (new)
2026/06/04 17:53:07 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/45/f95b93c6ff8e70046c4184b775beef/.command.trace: Copied (new)
2026/06/04 17:53:07 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/45/f95b93c6ff8e70046c4184b775beef/.exitcode: Copied (new)
2026/06/04 17:53:07 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780523459173_222355.log: Copied (new)
2026/06/04 17:53:07 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780523459165_222355.log: Copied (new)
2026/06/04 17:53:08 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/45/4f1bccdbc5000a41cb3e488bc6131d/.command.out: Copied (new)
2026/06/04 17:53:08 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/37/4e178cd62cfb398f90470ecc6bdf91/.command.begin: Copied (new)
2026/06/04 17:53:08 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/37/4e178cd62cfb398f90470ecc6bdf91/.command.err: Copied (new)
2026/06/04 17:53:08 INFO  : Logs_Intermediates/FastqGeneration/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna_S5_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:53:08 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/37/4e178cd62cfb398f90470ecc6bdf91/.command.out: Copied (new)
2026/06/04 17:53:09 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/37/4e178cd62cfb398f90470ecc6bdf91/.command.log: Copied (new)
2026/06/04 17:53:09 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/37/4e178cd62cfb398f90470ecc6bdf91/.command.run: Copied (new)
2026/06/04 17:53:09 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/37/4e178cd62cfb398f90470ecc6bdf91/.command.sh: Copied (new)
2026/06/04 17:53:09 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/37/4e178cd62cfb398f90470ecc6bdf91/.command.trace: Copied (new)
2026/06/04 17:53:09 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/37/4e178cd62cfb398f90470ecc6bdf91/.exitcode: Copied (new)
2026/06/04 17:53:09 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/37/4e178cd62cfb398f90470ecc6bdf91/Nirvana-20260603224801.log: Copied (new)
2026/06/04 17:53:09 INFO  : Logs_Intermediates/Tmb/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:53:09 INFO  : Logs_Intermediates/Tmb/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:53:09 INFO  : Logs_Intermediates/FastqGeneration/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna_S18_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:53:09 INFO  : Logs_Intermediates/Tmb/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:53:09 INFO  : Logs_Intermediates/Tmb/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:53:09 INFO  : Logs_Intermediates/Tmb/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:53:10 INFO  : Logs_Intermediates/Tmb/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.tmb.trace.tsv: Copied (new)
2026/06/04 17:53:10 INFO  : Logs_Intermediates/Tmb/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.tmb.metrics.csv: Copied (new)
2026/06/04 17:53:10 INFO  : Logs_Intermediates/Tmb/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:53:10 INFO  : Logs_Intermediates/Tmb/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603211010.log: Copied (new)
2026/06/04 17:53:10 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/47/6e63b32e3d82f67361fbaefb635d83/.command.out: Copied (new)
2026/06/04 17:53:10 INFO  : Logs_Intermediates/Tmb/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780526494209_325759.log: Copied (new)
2026/06/04 17:53:10 INFO  : Logs_Intermediates/Tmb/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz: Copied (new)
2026/06/04 17:53:10 INFO  : Logs_Intermediates/Tmb/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780526494202_325759.log: Copied (new)
2026/06/04 17:53:10 INFO  : ica_logs/out/Logs_Intermediates/Annotation/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603223437.log: Copied (new)
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2026/06/04 17:53:10 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/28/ca847d1527bdb82529f99f4fb97d41/.command.begin: Copied (new)
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2026/06/04 17:53:10 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/28/ca847d1527bdb82529f99f4fb97d41/.command.err: Copied (new)
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2026/06/04 17:53:10 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/28/ca847d1527bdb82529f99f4fb97d41/.command.out: Copied (new)
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2026/06/04 17:53:10 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/28/ca847d1527bdb82529f99f4fb97d41/.command.sh: Copied (new)
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2026/06/04 17:53:10 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/28/ca847d1527bdb82529f99f4fb97d41/.exitcode: Copied (new)
2026/06/04 17:53:11 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603225002.log: Copied (new)
2026/06/04 17:53:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.bam.md5sum: Copied (new)
2026/06/04 17:53:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
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2026/06/04 17:53:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:53:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.bam.bai: Copied (new)
2026/06/04 17:53:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:53:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/06/04 17:53:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/06/04 17:53:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/06/04 17:53:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:53:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/06/04 17:53:11 INFO  : Logs_Intermediates/FastqGeneration/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna_S5_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:53:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/06/04 17:53:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/06/04 17:53:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/06/04 17:53:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/06/04 17:53:11 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.exon_hist.csv: Copied (new)
2026/06/04 17:53:12 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/06/04 17:53:12 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.fastq_list.csv: Copied (new)
2026/06/04 17:53:12 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:53:12 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/06/04 17:53:12 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/06/04 17:53:12 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/06/04 17:53:12 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/06/04 17:53:12 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/06/04 17:53:12 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/06/04 17:53:12 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/06/04 17:53:12 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:53:12 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:53:12 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:53:12 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:53:12 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.insert-stats.tab: Copied (new)
2026/06/04 17:53:13 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/06/04 17:53:13 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/06/04 17:53:13 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_log.txt: Copied (new)
2026/06/04 17:53:13 INFO  : Logs_Intermediates/FastqGeneration/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna_S5_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:53:13 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_output.json: Copied (new)
2026/06/04 17:53:13 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/06/04 17:53:13 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:53:13 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:53:13 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:53:13 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:53:13 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.pileup.txt: Copied (new)
2026/06/04 17:53:13 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:53:13 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:53:13 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:53:13 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:53:13 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:53:13 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:53:13 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:53:13 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:53:13 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/06/04 17:53:13 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/06/04 17:53:13 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/06/04 17:53:13 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/06/04 17:53:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/06/04 17:53:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/06/04 17:53:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:53:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:53:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/06/04 17:53:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/06/04 17:53:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/06/04 17:53:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/06/04 17:53:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/06/04 17:53:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/06/04 17:53:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/06/04 17:53:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:53:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:53:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:53:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/06/04 17:53:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/06/04 17:53:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/06/04 17:53:14 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/06/04 17:53:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/06/04 17:53:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/06/04 17:53:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/06/04 17:53:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/06/04 17:53:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/06/04 17:53:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/06/04 17:53:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780520473553_112931.log: Copied (new)
2026/06/04 17:53:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780520473537_112931.log: Copied (new)
2026/06/04 17:53:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:53:15 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions.txt: Copied (new)
2026/06/04 17:53:15 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:53:15 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:53:15 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:53:15 INFO  : Logs_Intermediates/FastqGeneration/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna_S3_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:53:15 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:53:15 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:53:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:53:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:53:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:53:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:53:16 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
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2026/06/04 17:53:17 INFO  : Logs_Intermediates/LrCalculator/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
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2026/06/04 17:53:18 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/02/27c091a7307e877e30db59bd5c7dde/.command.err: Copied (new)
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2026/06/04 17:53:19 INFO  : Logs_Intermediates/FastqGeneration/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna_S18_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:53:19 INFO  : Logs_Intermediates/Contamination/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/Spoiler-20260603225243.log: Copied (new)
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2026/06/04 17:53:19 INFO  : Logs_Intermediates/MetricsOutput/659_egs-T1-TDNA-1_HLNLMDRX7_1/659_egs-T1-TDNA-1_HLNLMDRX7_1_MetricsOutput.tsv: Copied (new)
2026/06/04 17:53:19 INFO  : Logs_Intermediates/CombinedVariantOutput/659_egs-T1-TDNA-1_HLNLMDRX7_1/659_egs-T1-TDNA-1_HLNLMDRX7_1_CombinedVariantOutput.tsv: Copied (new)
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2026/06/04 17:53:21 INFO  : Logs_Intermediates/FastqGeneration/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna_S5_L002_R2_001.fastq.gz: Multi-thread Copied (new)
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2026/06/04 17:53:21 INFO  : Logs_Intermediates/Tmb/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz: Copied (new)
2026/06/04 17:53:21 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/38/cb96655a363120b3331f6869339d8e/.command.log: Copied (new)
2026/06/04 17:53:21 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/38/cb96655a363120b3331f6869339d8e/.command.out: Copied (new)
2026/06/04 17:53:21 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/38/cb96655a363120b3331f6869339d8e/.command.run: Copied (new)
2026/06/04 17:53:22 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/38/cb96655a363120b3331f6869339d8e/.command.trace: Copied (new)
2026/06/04 17:53:22 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/38/cb96655a363120b3331f6869339d8e/.command.sh: Copied (new)
2026/06/04 17:53:22 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/38/cb96655a363120b3331f6869339d8e/.exitcode: Copied (new)
2026/06/04 17:53:22 INFO  : 
Transferred:   	  279.955 GiB / 409.914 GiB, 68%, 1.318 GiB/s, ETA 1m38s
Transferred:         6454 / 14718, 44%
Elapsed time:      3m30.0s
Transferring:
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 99% /5.160Gi, 16.835Mi/s, 1s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 99% /4.711Gi, 21.333Mi/s, 1s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 99% /4.999Gi, 23.598Mi/s, 1s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 87% /5.417Gi, 24.035Mi/s, 29s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 81% /4.751Gi, 20.530Mi/s, 43s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 77% /5.229Gi, 21.143Mi/s, 56s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 75% /4.573Gi, 19.842Mi/s, 56s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 81% /4.391Gi, 25.877Mi/s, 32s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 67% /5.364Gi, 29.311Mi/s, 1m1s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 61% /4.924Gi, 22.986Mi/s, 1m24s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 57% /5.095Gi, 25.572Mi/s, 1m27s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 57% /4.297Gi, 25.690Mi/s, 1m12s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 37% /4.893Gi, 17.787Mi/s, 2m55s
 * Logs_Intermediates/Fas…3_L001_R1_001.fastq.gz: 98% /1.880Gi, 23.236Mi/s, 1s
 * Logs_Intermediates/Fas…3_L001_R2_001.fastq.gz: 96% /1.939Gi, 27.594Mi/s, 2s
 * Logs_Intermediates/Fas…3_L002_R2_001.fastq.gz: 90% /1.967Gi, 24.303Mi/s, 7s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 39% /4.616Gi, 24.594Mi/s, 1m55s
 * Logs_Intermediates/Fas…8_L002_R2_001.fastq.gz: 96% /1.818Gi, 23.121Mi/s, 2s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 34% /5.032Gi, 29.580Mi/s, 1m54s
 * Logs_Intermediates/Fas…6_L001_R1_001.fastq.gz: 84% /2.133Gi, 26.189Mi/s, 12s
 * Logs_Intermediates/Fas…6_L001_R2_001.fastq.gz: 91% /2.124Gi, 27.048Mi/s, 7s
 * Logs_Intermediates/Fas…6_L002_R1_001.fastq.gz: 74% /2.152Gi, 24.620Mi/s, 23s
 * Logs_Intermediates/Fas…6_L002_R2_001.fastq.gz: 71% /2.138Gi, 20.611Mi/s, 30s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 32% /5.053Gi, 25.075Mi/s, 2m19s
 * Logs_Intermediates/Fas…7_L001_R1_001.fastq.gz: 84% /1.709Gi, 22.853Mi/s, 12s
 * Logs_Intermediates/Fas…7_L001_R2_001.fastq.gz: 92% /1.759Gi, 23.742Mi/s, 5s
 * Logs_Intermediates/Fas…7_L002_R1_001.fastq.gz: 92% /1.724Gi, 27.302Mi/s, 4s
 * Logs_Intermediates/Fas…7_L002_R2_001.fastq.gz: 82% /1.776Gi, 22.461Mi/s, 14s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 27% /5.199Gi, 22.354Mi/s, 2m52s
 * Logs_Intermediates/Fas…9_L001_R1_001.fastq.gz: 64% /1.852Gi, 23.503Mi/s, 28s
 * Logs_Intermediates/Fas…9_L001_R2_001.fastq.gz: 75% /1.823Gi, 27.076Mi/s, 16s
 * Logs_Intermediates/Fas…9_L002_R1_001.fastq.gz: 60% /1.820Gi, 19.439Mi/s, 38s
 * Logs_Intermediates/Fas…9_L002_R2_001.fastq.gz: 82% /1.790Gi, 24.257Mi/s, 13s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 23% /4.565Gi, 19.996Mi/s, 2m57s
 * Logs_Intermediates/Fas…7_L001_R1_001.fastq.gz: 57% /1.842Gi, 22.219Mi/s, 35s
 * Logs_Intermediates/Fas…7_L001_R2_001.fastq.gz: 47% /1.899Gi, 20.388Mi/s, 49s
 * Logs_Intermediates/Fas…7_L002_R1_001.fastq.gz: 53% /1.858Gi, 20.406Mi/s, 43s
 * Logs_Intermediates/Fas…7_L002_R2_001.fastq.gz: 55% /1.918Gi, 20.501Mi/s, 42s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 18% /5.390Gi, 28.053Mi/s, 2m40s
 * Logs_Intermediates/Fas…1_L001_R1_001.fastq.gz: 40% /1.918Gi, 18.018Mi/s, 1m4s
 * Logs_Intermediates/Fas…1_L001_R2_001.fastq.gz: 56% /1.784Gi, 27.453Mi/s, 29s
 * Logs_Intermediates/Fas…1_L002_R1_001.fastq.gz: 43% /1.918Gi, 23.095Mi/s, 47s
 * Logs_Intermediates/Fas…1_L002_R2_001.fastq.gz: 43% /1.777Gi, 19.189Mi/s, 53s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 17% /4.435Gi, 20.258Mi/s, 3m4s
 * Logs_Intermediates/Fas…0_L001_R1_001.fastq.gz: 40% /1.922Gi, 24.102Mi/s, 48s
 * Logs_Intermediates/Fas…0_L001_R2_001.fastq.gz: 37% /1.988Gi, 25.748Mi/s, 49s
 * Logs_Intermediates/Fas…0_L002_R1_001.fastq.gz: 37% /1.938Gi, 23.960Mi/s, 52s
 * Logs_Intermediates/Fas…0_L002_R2_001.fastq.gz: 31% /2.010Gi, 21.220Mi/s, 1m6s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam:  8% /4.442Gi, 15.468Mi/s, 4m29s
 * Logs_Intermediates/Fas…1_L001_R1_001.fastq.gz: 17% /1.792Gi, 22.857Mi/s, 1m6s
 * Logs_Intermediates/Fas…1_L001_R2_001.fastq.gz: 12% /1.785Gi, 16.000Mi/s, 1m40s
 * Logs_Intermediates/Fas…1_L002_R1_001.fastq.gz: 12% /1.788Gi, 16.000Mi/s, 1m40s
 * Logs_Intermediates/Fas…1_L002_R2_001.fastq.gz: 22% /1.777Gi, 29.539Mi/s, 47s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam:  3% /5.006Gi, 17.455Mi/s, 4m42s
 * ica_logs/work/67/bf96a…5d4d7bf1f/.command.log: 41% /71.509Mi, 10.998Mi/s, 3s
 * ica_logs/work/67/bf96a…5d4d7bf1f/.command.out:  9% /71.509Mi, 2.498Mi/s, 25s
 * Logs_Intermediates/Fas…9_L001_R1_001.fastq.gz:  3% /1.739Gi, 0/s, -
 * Logs_Intermediates/Fas…9_L001_R2_001.fastq.gz:  0% /1.740Gi, 0/s, -
 * Logs_Intermediates/Fas…9_L002_R1_001.fastq.gz:  1% /1.726Gi, 0/s, -
 * Logs_Intermediates/Fas…9_L002_R2_001.fastq.gz:  3% /1.727Gi, 0/s, -
 * ica_logs/work/c7/82c9c…a.snperror-sampler.log:100% /2.140Ki, 0/s, -
 * ica_logs/work/f9/f8f98…80526527813_327339.log: transferring
 * ica_logs/work/f9/f8f98…80526527805_327339.log: transferring
 * ica_logs/out/Logs_Inte…ana-20260603225000.log: transferring

2026/06/04 17:53:22 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/38/cb96655a363120b3331f6869339d8e/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:53:22 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/27/c3031386b70c47a79bd6e406aa2a84/Tmb/dragen_run_1780526527813_327339.log: Copied (new)
2026/06/04 17:53:22 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/27/c3031386b70c47a79bd6e406aa2a84/Tmb/dragen_syslog_1780526527805_327339.log: Copied (new)
2026/06/04 17:53:22 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603225000.log: Copied (new)
2026/06/04 17:53:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:53:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.bam.md5sum: Copied (new)
2026/06/04 17:53:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:53:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.gff3: Copied (new)
2026/06/04 17:53:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:53:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/06/04 17:53:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/06/04 17:53:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/06/04 17:53:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:53:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/06/04 17:53:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna/659_7V-T1-TDNA-1_HLNLMDRX7_1_dna.bam: Multi-thread Copied (new)
2026/06/04 17:53:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/06/04 17:53:23 INFO  : Logs_Intermediates/FastqGeneration/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna_S18_L002_R2_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:53:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna/659_F2-T1-TDNA-1_HLNLMDRX7_1_dna.bam: Multi-thread Copied (new)
2026/06/04 17:53:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.bam.bai: Copied (new)
2026/06/04 17:53:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/06/04 17:53:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/06/04 17:53:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/06/04 17:53:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.exon_hist.csv: Copied (new)
2026/06/04 17:53:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.fastq_list.csv: Copied (new)
2026/06/04 17:53:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/06/04 17:53:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/06/04 17:53:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:53:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/06/04 17:53:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/06/04 17:53:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/06/04 17:53:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/06/04 17:53:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/06/04 17:53:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/06/04 17:53:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:53:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:53:23 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:53:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.insert-stats.tab: Copied (new)
2026/06/04 17:53:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:53:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/06/04 17:53:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_log.txt: Copied (new)
2026/06/04 17:53:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/06/04 17:53:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_output.json: Copied (new)
2026/06/04 17:53:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:53:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/06/04 17:53:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:53:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.pileup.txt: Copied (new)
2026/06/04 17:53:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:53:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:53:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:53:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:53:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:53:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:53:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:53:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:53:24 INFO  : Logs_Intermediates/FastqGeneration/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna_S3_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:53:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:53:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:53:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/06/04 17:53:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/06/04 17:53:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/06/04 17:53:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/06/04 17:53:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/06/04 17:53:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/06/04 17:53:24 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:53:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/06/04 17:53:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:53:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/06/04 17:53:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/06/04 17:53:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/06/04 17:53:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/06/04 17:53:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/06/04 17:53:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/06/04 17:53:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/06/04 17:53:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:53:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/06/04 17:53:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:53:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:53:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/06/04 17:53:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/06/04 17:53:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/06/04 17:53:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/06/04 17:53:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/06/04 17:53:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/06/04 17:53:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/06/04 17:53:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/06/04 17:53:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions.txt: Copied (new)
2026/06/04 17:53:25 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/27/c1e7227d8cdae10b7be95a8bc094e9/Gis/dragen_run_1780523738113_234068.log: Copied (new)
2026/06/04 17:53:25 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/49/ef15186a3dc4df2f821c95d4d7bf1f/.command.log: Copied (new)
2026/06/04 17:53:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780519752526_95160.log: Copied (new)
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2026/06/04 17:53:25 INFO  : Logs_Intermediates/nextflow_work_logs/21/ac4971e09465212c546f6aaf1751eb/.command.err: Copied (new)
2026/06/04 17:53:25 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780519752542_95160.log: Copied (new)
2026/06/04 17:53:25 INFO  : Logs_Intermediates/nextflow_work_logs/21/ac4971e09465212c546f6aaf1751eb/.command.out: Copied (new)
2026/06/04 17:53:25 INFO  : Logs_Intermediates/nextflow_work_logs/21/ac4971e09465212c546f6aaf1751eb/.command.log: Copied (new)
2026/06/04 17:53:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz: Copied (new)
2026/06/04 17:53:26 INFO  : Logs_Intermediates/nextflow_work_logs/21/ac4971e09465212c546f6aaf1751eb/.command.run: Copied (new)
2026/06/04 17:53:26 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:53:26 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:53:26 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:53:26 INFO  : Logs_Intermediates/nextflow_work_logs/21/ac4971e09465212c546f6aaf1751eb/.command.sh: Copied (new)
2026/06/04 17:53:26 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/2f/65c711cd07b847fd86468c1dfec9b7/.command.begin: Copied (new)
2026/06/04 17:53:26 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/2f/65c711cd07b847fd86468c1dfec9b7/.command.err: Copied (new)
2026/06/04 17:53:26 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:53:26 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/2f/65c711cd07b847fd86468c1dfec9b7/.command.log: Copied (new)
2026/06/04 17:53:26 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780521460950_143474.log: Copied (new)
2026/06/04 17:53:26 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/2f/65c711cd07b847fd86468c1dfec9b7/.command.out: Copied (new)
2026/06/04 17:53:26 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/2f/65c711cd07b847fd86468c1dfec9b7/.command.sh: Copied (new)
2026/06/04 17:53:26 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/2f/65c711cd07b847fd86468c1dfec9b7/.command.run: Copied (new)
2026/06/04 17:53:26 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/2f/65c711cd07b847fd86468c1dfec9b7/.command.trace: Copied (new)
2026/06/04 17:53:26 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/2f/65c711cd07b847fd86468c1dfec9b7/.exitcode: Copied (new)
2026/06/04 17:53:26 INFO  : ica_logs/out/Logs_Intermediates/Annotation/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603223140.log: Copied (new)
2026/06/04 17:53:26 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780521460966_143474.log: Copied (new)
2026/06/04 17:53:26 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/2e/327f8d4155e8e08ffd65d1c7c34102/.command.begin: Copied (new)
2026/06/04 17:53:26 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/2e/327f8d4155e8e08ffd65d1c7c34102/.command.err: Copied (new)
2026/06/04 17:53:26 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/2e/327f8d4155e8e08ffd65d1c7c34102/.command.log: Copied (new)
2026/06/04 17:53:26 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/2e/327f8d4155e8e08ffd65d1c7c34102/.command.out: Copied (new)
2026/06/04 17:53:26 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/2e/327f8d4155e8e08ffd65d1c7c34102/.command.run: Copied (new)
2026/06/04 17:53:26 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/2e/327f8d4155e8e08ffd65d1c7c34102/.exitcode: Copied (new)
2026/06/04 17:53:26 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/2e/327f8d4155e8e08ffd65d1c7c34102/.command.sh: Copied (new)
2026/06/04 17:53:26 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/2e/327f8d4155e8e08ffd65d1c7c34102/.command.trace: Copied (new)
2026/06/04 17:53:26 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/2e/327f8d4155e8e08ffd65d1c7c34102/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:53:26 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:53:26 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:53:26 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:53:26 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:53:26 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:53:26 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:53:26 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:53:26 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:53:26 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:53:27 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:53:27 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:53:27 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:53:27 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/06/04 17:53:27 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
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2026/06/04 17:53:28 INFO  : Logs_Intermediates/FastqGeneration/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna_S3_L001_R2_001.fastq.gz: Multi-thread Copied (new)
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2026/06/04 17:53:28 INFO  : Logs_Intermediates/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.bam: Multi-thread Copied (new)
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2026/06/04 17:53:29 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780525714319_301102.log: Copied (new)
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2026/06/04 17:53:29 INFO  : Logs_Intermediates/FastqGeneration/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna_S3_L002_R2_001.fastq.gz: Multi-thread Copied (new)
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2026/06/04 17:53:32 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/47/de765187dc109120ef19cfe05ae0e6/.command.sh: Copied (new)
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2026/06/04 17:53:32 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/30/2af1d73fbd31ec5ae55a80340defca/.command.env: Copied (new)
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2026/06/04 17:53:32 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/30/2af1d73fbd31ec5ae55a80340defca/.command.err: Copied (new)
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2026/06/04 17:53:32 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780519194620_79382.log: Copied (new)
2026/06/04 17:53:32 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/30/2af1d73fbd31ec5ae55a80340defca/.command.log: Copied (new)
2026/06/04 17:53:32 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/30/2af1d73fbd31ec5ae55a80340defca/.exitcode: Copied (new)
2026/06/04 17:53:32 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/30/2af1d73fbd31ec5ae55a80340defca/.command.out: Copied (new)
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2026/06/04 17:53:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:53:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:53:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:53:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:53:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:53:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:53:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:53:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:53:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:53:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:53:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:53:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/06/04 17:53:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:53:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:53:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:53:32 INFO  : Logs_Intermediates/LrAnnotation/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna_DNAExonCNV_Annotated.json.gz.jsi: Copied (new)
2026/06/04 17:53:32 INFO  : Logs_Intermediates/LrAnnotation/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna_DNAExonCNV_Annotated.json.gz: Copied (new)
2026/06/04 17:53:32 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/2e/0bba4ffffbe067692beef74e8c1ca9/.command.begin: Copied (new)
2026/06/04 17:53:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/06/04 17:53:32 INFO  : Logs_Intermediates/LrAnnotation/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603224247.log: Copied (new)
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2026/06/04 17:53:32 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780524182604_244827.log: Copied (new)
2026/06/04 17:53:32 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/2e/0bba4ffffbe067692beef74e8c1ca9/.command.err: Copied (new)
2026/06/04 17:53:33 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/2e/0bba4ffffbe067692beef74e8c1ca9/.exitcode: Copied (new)
2026/06/04 17:53:33 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/2e/0bba4ffffbe067692beef74e8c1ca9/.command.run: Copied (new)
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2026/06/04 17:53:33 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/2e/0bba4ffffbe067692beef74e8c1ca9/.command.out: Copied (new)
2026/06/04 17:53:33 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780524182596_244827.log: Copied (new)
2026/06/04 17:53:33 INFO  : ica_logs/out/Logs_Intermediates/DnaCoverageReports/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/06/04 17:53:33 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/2e/0bba4ffffbe067692beef74e8c1ca9/.command.log: Copied (new)
2026/06/04 17:53:33 INFO  : Logs_Intermediates/LrCalculator/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna/LrCalculator-20260603224957.log: Copied (new)
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2026/06/04 17:53:33 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603205858.log: Copied (new)
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2026/06/04 17:53:33 INFO  : Logs_Intermediates/Annotation/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_Annotated.json.gz.jsi: Copied (new)
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2026/06/04 17:53:33 INFO  : ica_logs/out/Logs_Intermediates/Gis/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780523191574_214886.log: Copied (new)
2026/06/04 17:53:33 INFO  : Logs_Intermediates/Annotation/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603224612.log: Copied (new)
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2026/06/04 17:53:33 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_UI-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780526879597_337323.log: Copied (new)
2026/06/04 17:53:33 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/04/e760071eaf8c312c34e10a2b387af8/.command.err: Copied (new)
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2026/06/04 17:53:33 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/04/e760071eaf8c312c34e10a2b387af8/.command.run: Copied (new)
2026/06/04 17:53:33 INFO  : Logs_Intermediates/Gis/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:53:33 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/04/e760071eaf8c312c34e10a2b387af8/.command.sh: Copied (new)
2026/06/04 17:53:33 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/04/e760071eaf8c312c34e10a2b387af8/.command.log: Copied (new)
2026/06/04 17:53:33 INFO  : Logs_Intermediates/Gis/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.abcn_annotated.vcf: Copied (new)
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2026/06/04 17:53:33 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/04/e760071eaf8c312c34e10a2b387af8/.command.out: Copied (new)
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2026/06/04 17:53:33 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/05/268e43c73e4bdcb1e2eb79d99b2df8/.command.err: Copied (new)
2026/06/04 17:53:33 INFO  : Logs_Intermediates/Gis/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780525498321_294721.log: Copied (new)
2026/06/04 17:53:33 INFO  : Logs_Intermediates/Contamination/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna_contamination.json: Copied (new)
2026/06/04 17:53:33 INFO  : Logs_Intermediates/Contamination/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/Spoiler-20260603225601.log: Copied (new)
2026/06/04 17:53:33 INFO  : Logs_Intermediates/Gis/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780525498314_294721.log: Copied (new)
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2026/06/04 17:53:33 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/05/268e43c73e4bdcb1e2eb79d99b2df8/.command.log: Copied (new)
2026/06/04 17:53:33 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/05/268e43c73e4bdcb1e2eb79d99b2df8/.command.out: Copied (new)
2026/06/04 17:53:33 INFO  : Logs_Intermediates/Gis/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna_bAllele.tsv: Copied (new)
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2026/06/04 17:53:33 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/05/268e43c73e4bdcb1e2eb79d99b2df8/.command.run: Copied (new)
2026/06/04 17:53:33 INFO  : Logs_Intermediates/Gis/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna_raw.tsv: Copied (new)
2026/06/04 17:53:33 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/05/268e43c73e4bdcb1e2eb79d99b2df8/.command.sh: Copied (new)
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2026/06/04 17:53:33 INFO  : Logs_Intermediates/CombinedVariantOutput/659_ev0-T1-TDNA-1_HLNLMDRX7_1/659_ev0-T1-TDNA-1_HLNLMDRX7_1_CombinedVariantOutput.tsv: Copied (new)
2026/06/04 17:53:33 INFO  : Logs_Intermediates/Tmb/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
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2026/06/04 17:53:33 INFO  : Logs_Intermediates/Gis/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna_logRatio.tsv: Copied (new)
2026/06/04 17:53:33 INFO  : Logs_Intermediates/Tmb/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna.tmb.metrics.csv: Copied (new)
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2026/06/04 17:53:33 INFO  : Logs_Intermediates/Tmb/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603204042.log: Copied (new)
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2026/06/04 17:53:33 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/LrCalculator-20260603223442.log: Copied (new)
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2026/06/04 17:53:33 INFO  : Logs_Intermediates/MetricsOutput/659_ev0-T1-TDNA-1_HLNLMDRX7_1/659_ev0-T1-TDNA-1_HLNLMDRX7_1_MetricsOutput.tsv: Copied (new)
2026/06/04 17:53:34 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/34/bf1fe5064756e68064c3d67e8310d6/.command.begin: Copied (new)
2026/06/04 17:53:34 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/34/bf1fe5064756e68064c3d67e8310d6/.command.err: Copied (new)
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2026/06/04 17:53:34 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/34/bf1fe5064756e68064c3d67e8310d6/.command.out: Copied (new)
2026/06/04 17:53:34 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/34/bf1fe5064756e68064c3d67e8310d6/.command.trace: Copied (new)
2026/06/04 17:53:34 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/34/bf1fe5064756e68064c3d67e8310d6/.command.sh: Copied (new)
2026/06/04 17:53:34 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/34/bf1fe5064756e68064c3d67e8310d6/.exitcode: Copied (new)
2026/06/04 17:53:34 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/34/bf1fe5064756e68064c3d67e8310d6/gen_coverage_reports.log: Copied (new)
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2026/06/04 17:53:34 INFO  : Logs_Intermediates/Annotation/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_Annotated.json.gz: Copied (new)
2026/06/04 17:53:34 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:53:34 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603224956.log: Copied (new)
2026/06/04 17:53:34 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/40/455628fe8c33e94bdac9eb4972b9c6/.command.begin: Copied (new)
2026/06/04 17:53:34 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:53:34 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/40/455628fe8c33e94bdac9eb4972b9c6/.command.err: Copied (new)
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2026/06/04 17:53:34 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/40/455628fe8c33e94bdac9eb4972b9c6/.command.log: Copied (new)
2026/06/04 17:53:34 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780519189304_80927.log: Copied (new)
2026/06/04 17:53:34 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/40/455628fe8c33e94bdac9eb4972b9c6/.exitcode: Copied (new)
2026/06/04 17:53:34 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/40/455628fe8c33e94bdac9eb4972b9c6/.command.out: Copied (new)
2026/06/04 17:53:34 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:53:34 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/40/455628fe8c33e94bdac9eb4972b9c6/.command.trace: Copied (new)
2026/06/04 17:53:34 INFO  : Logs_Intermediates/Tmb/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz: Copied (new)
2026/06/04 17:53:34 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/40/455628fe8c33e94bdac9eb4972b9c6/.command.run: Copied (new)
2026/06/04 17:53:34 INFO  : Logs_Intermediates/nextflow_work_logs/22/2143cb231de1efa1ebb9e2527bd794/.command.out: Copied (new)
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2026/06/04 17:53:34 INFO  : Logs_Intermediates/nextflow_work_logs/22/2143cb231de1efa1ebb9e2527bd794/.command.run: Copied (new)
2026/06/04 17:53:34 INFO  : Logs_Intermediates/nextflow_work_logs/22/2143cb231de1efa1ebb9e2527bd794/.command.log: Copied (new)
2026/06/04 17:53:34 INFO  : Logs_Intermediates/LrCalculator/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.vcf: Copied (new)
2026/06/04 17:53:34 INFO  : Logs_Intermediates/LrCalculator/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/LrCalculator-20260603224246.log: Copied (new)
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2026/06/04 17:53:34 INFO  : Logs_Intermediates/nextflow_work_logs/22/2143cb231de1efa1ebb9e2527bd794/.command.sh: Copied (new)
2026/06/04 17:53:34 INFO  : Logs_Intermediates/nextflow_work_logs/22/2143cb231de1efa1ebb9e2527bd794/.command.err: Copied (new)
2026/06/04 17:53:34 INFO  : Logs_Intermediates/DnaCoverageReports/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.gene_cov_report.tsv: Copied (new)
2026/06/04 17:53:34 INFO  : Logs_Intermediates/DnaCoverageReports/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/06/04 17:53:34 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:53:34 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:53:34 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:53:34 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:53:34 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:53:34 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:53:34 INFO  : Logs_Intermediates/DnaCoverageReports/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.exon_cov_report.tsv: Copied (new)
2026/06/04 17:53:34 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:53:34 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:53:34 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:53:34 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:53:34 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:53:34 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/32/d8da49e7fc3aa79a9e0a077b56502a/.command.begin: Copied (new)
2026/06/04 17:53:34 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780525333183_288132.log: Copied (new)
2026/06/04 17:53:34 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:53:34 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:53:34 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:53:34 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna_DragenExonCNV.json: Copied (new)
2026/06/04 17:53:34 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/32/d8da49e7fc3aa79a9e0a077b56502a/.command.err: Copied (new)
2026/06/04 17:53:34 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gc-corrected.gz: Copied (new)
2026/06/04 17:53:34 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/32/d8da49e7fc3aa79a9e0a077b56502a/.command.out: Copied (new)
2026/06/04 17:53:34 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780525333175_288132.log: Copied (new)
2026/06/04 17:53:34 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/32/d8da49e7fc3aa79a9e0a077b56502a/.command.log: Copied (new)
2026/06/04 17:53:34 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/32/d8da49e7fc3aa79a9e0a077b56502a/.command.run: Copied (new)
2026/06/04 17:53:34 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/32/d8da49e7fc3aa79a9e0a077b56502a/.exitcode: Copied (new)
2026/06/04 17:53:34 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/32/d8da49e7fc3aa79a9e0a077b56502a/.command.trace: Copied (new)
2026/06/04 17:53:34 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/32/d8da49e7fc3aa79a9e0a077b56502a/.command.sh: Copied (new)
2026/06/04 17:53:34 INFO  : ica_logs/out/Logs_Intermediates/Gis/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780524313146_255010.log: Copied (new)
2026/06/04 17:53:34 INFO  : ica_logs/out/Logs_Intermediates/Gis/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780524313153_255010.log: Copied (new)
2026/06/04 17:53:34 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/3b/16cbdba1640d15c313f656126d9065/.command.err: Copied (new)
2026/06/04 17:53:34 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/3b/16cbdba1640d15c313f656126d9065/.command.begin: Copied (new)
2026/06/04 17:53:35 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/3b/16cbdba1640d15c313f656126d9065/.command.out: Copied (new)
2026/06/04 17:53:35 INFO  : ica_logs/out/Logs_Intermediates/Contamination/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/Spoiler-20260603224722.log: Copied (new)
2026/06/04 17:53:35 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/3b/16cbdba1640d15c313f656126d9065/.command.log: Copied (new)
2026/06/04 17:53:35 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/3b/16cbdba1640d15c313f656126d9065/.command.run: Copied (new)
2026/06/04 17:53:35 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/3b/16cbdba1640d15c313f656126d9065/.command.sh: Copied (new)
2026/06/04 17:53:35 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/3b/16cbdba1640d15c313f656126d9065/.exitcode: Copied (new)
2026/06/04 17:53:35 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/3b/16cbdba1640d15c313f656126d9065/.command.trace: Copied (new)
2026/06/04 17:53:35 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/38/cb96655a363120b3331f6869339d8e/Contamination/Spoiler-20260603230315.log: Copied (new)
2026/06/04 17:53:35 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780526400834_321182.log: Copied (new)
2026/06/04 17:53:35 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603204937.log: Copied (new)
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2026/06/04 17:53:35 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_b73-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780526400826_321182.log: Copied (new)
2026/06/04 17:53:35 INFO  : Logs_Intermediates/Tmb/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:53:35 INFO  : Logs_Intermediates/Tmb/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:53:35 INFO  : Logs_Intermediates/Tmb/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:53:35 INFO  : ica_logs/out/Logs_Intermediates/DnaCoverageReports/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/06/04 17:53:35 INFO  : Logs_Intermediates/Tmb/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna.tmb.metrics.csv: Copied (new)
2026/06/04 17:53:35 INFO  : Logs_Intermediates/Tmb/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
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2026/06/04 17:53:35 INFO  : Logs_Intermediates/DnaDragenCaller/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna.bam.md5sum: Copied (new)
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2026/06/04 17:53:38 INFO  : Logs_Intermediates/Gis/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna_logRatio.original.tsv: Copied (new)
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2026/06/04 17:53:38 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/41/846aa907228e90ce6b4cb13ac5194e/.exitcode: Copied (new)
2026/06/04 17:53:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.bam.md5sum: Copied (new)
2026/06/04 17:53:38 INFO  : Logs_Intermediates/Gis/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna_raw.tsv: Copied (new)
2026/06/04 17:53:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna-replay.json: Copied (new)
2026/06/04 17:53:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
2026/06/04 17:53:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz.md5sum: Copied (new)
2026/06/04 17:53:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.igv_session.xml: Copied (new)
2026/06/04 17:53:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz: Copied (new)
2026/06/04 17:53:38 INFO  : Logs_Intermediates/Gis/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna_bAllele.tsv: Copied (new)
2026/06/04 17:53:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.vcf.gz.tbi: Copied (new)
2026/06/04 17:53:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
2026/06/04 17:53:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.gff3: Copied (new)
2026/06/04 17:53:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.exon_contig_mean_cov.csv: Copied (new)
2026/06/04 17:53:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.exon_fine_hist.csv: Copied (new)
2026/06/04 17:53:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.exon_overall_mean_cov.csv: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.exon_hist.csv: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.exon_coverage_metrics.csv: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.fastq_list.csv: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.exon_read_cov_report.bed: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.exon_cov_report.bed: Copied (new)
2026/06/04 17:53:39 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/4b/7529941c30470ada110dc49ed10201/.command.log: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/Gis/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna_logRatio.tsv: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.gvcf_metrics.csv: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.md5sum: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.fragment_length_hist.csv: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.gc_metrics.csv: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.gvcf.gz.tbi: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.hard-filtered.baf.bw: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.fastqc_metrics.csv: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.mapping_metrics.csv: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.insert-stats.tab: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.exon_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_diffs.txt: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.improper.pairs.bw: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_output.json: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.md5sum: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_log.txt: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.microsat_tumor.dist: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.pileup.txt: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/Tmb/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna_DNAVariants_TMB_Annotated.json.gz: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz.tbi: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.seg: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.bw: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.target.counts.gz: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.raw.hard-filtered.vcf.gz: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_contig_mean_cov.csv: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_overall_mean_cov.csv: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_coverage_metrics.csv: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_fine_hist.csv: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_callability.bed: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_hist.csv: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.bam.bai: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_contig_mean_cov.csv: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_fine_hist.csv: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.time_metrics.csv: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_callability.bed: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_hist.csv: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_overall_mean_cov.csv: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_coverage_metrics.csv: Copied (new)
2026/06/04 17:53:39 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:53:40 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.trimmer_metrics.csv: Copied (new)
2026/06/04 17:53:40 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_contig_mean_cov.csv: Copied (new)
2026/06/04 17:53:40 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.umi_metrics.csv: Copied (new)
2026/06/04 17:53:40 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.target_bed_read_cov_report.bed: Copied (new)
2026/06/04 17:53:40 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_coverage_metrics.csv: Copied (new)
2026/06/04 17:53:40 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.tn.bw: Copied (new)
2026/06/04 17:53:40 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_somatic_callable_regions.bed: Copied (new)
2026/06/04 17:53:40 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.tmb_read_cov_report.bed: Copied (new)
2026/06/04 17:53:40 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.tn.tsv.gz: Copied (new)
2026/06/04 17:53:40 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions.txt: Copied (new)
2026/06/04 17:53:40 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.vc_metrics.csv: Copied (new)
2026/06/04 17:53:40 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_overall_mean_cov.csv: Copied (new)
2026/06/04 17:53:40 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_hist.csv: Copied (new)
2026/06/04 17:53:40 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_fine_hist.csv: Copied (new)
2026/06/04 17:53:40 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.umi-regions-finder.txt: Copied (new)
2026/06/04 17:53:40 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/40/79e72246cc185efaeeb597dbfffc0f/.command.err: Copied (new)
2026/06/04 17:53:40 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/40/79e72246cc185efaeeb597dbfffc0f/.command.begin: Copied (new)
2026/06/04 17:53:40 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780520868640_126681.log: Copied (new)
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2026/06/04 17:53:40 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/40/79e72246cc185efaeeb597dbfffc0f/.exitcode: Copied (new)
2026/06/04 17:53:40 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.wgs_somatic_callable_regions.bed: Copied (new)
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2026/06/04 17:53:40 INFO  : Logs_Intermediates/nextflow_work_logs/22/412c25fcd9453014d0d40d448dbd1e/.command.err: Copied (new)
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2026/06/04 17:53:40 INFO  : Logs_Intermediates/nextflow_work_logs/22/412c25fcd9453014d0d40d448dbd1e/.command.out: Copied (new)
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2026/06/04 17:53:40 INFO  : Logs_Intermediates/nextflow_work_logs/22/412c25fcd9453014d0d40d448dbd1e/.command.run: Copied (new)
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2026/06/04 17:53:40 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna.cnv.excluded_intervals.bed.gz: Copied (new)
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2026/06/04 17:53:40 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna.seg.bw: Copied (new)
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2026/06/04 17:53:40 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called: Copied (new)
2026/06/04 17:53:40 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna.seg.called.merged: Copied (new)
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2026/06/04 17:53:40 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna.cnv_metrics.csv: Copied (new)
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2026/06/04 17:53:40 INFO  : ica_logs/out/Logs_Intermediates/Annotation/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603223536.log: Copied (new)
2026/06/04 17:53:40 INFO  : Logs_Intermediates/LrCalculator/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/LrCalculator-20260603223930.log: Copied (new)
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2026/06/04 17:53:41 INFO  : ica_logs/out/Logs_Intermediates/DnaCoverageReports/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/gen_coverage_reports.log: Copied (new)
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2026/06/04 17:53:41 INFO  : Logs_Intermediates/DnaDragenExonCnvCaller/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780524076562_243613.log: Copied (new)
2026/06/04 17:53:41 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/38/6b2c502b646dc9a0de1730715b87b0/.command.log: Copied (new)
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2026/06/04 17:53:41 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/39/2943812df08c8b8e29034a3519998b/.exitcode: Copied (new)
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2026/06/04 17:53:41 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780525869626_305881.log: Copied (new)
2026/06/04 17:53:41 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603201809.log: Copied (new)
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2026/06/04 17:53:41 INFO  : Logs_Intermediates/Annotation/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603223852.log: Copied (new)
2026/06/04 17:53:41 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/07/6e673f7be24b9526f41557a5ac8770/.command.err: Copied (new)
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2026/06/04 17:53:41 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/07/6e673f7be24b9526f41557a5ac8770/.command.sh: Copied (new)
2026/06/04 17:53:41 INFO  : Logs_Intermediates/FastqGeneration/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna_S19_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:53:41 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/58/3a53cf050be4f8686f9f751ce0ac20/.command.begin: Copied (new)
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2026/06/04 17:53:41 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/07/6e673f7be24b9526f41557a5ac8770/.command.log: Copied (new)
2026/06/04 17:53:41 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/07/6e673f7be24b9526f41557a5ac8770/.command.run: Copied (new)
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2026/06/04 17:53:41 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780523359819_217271.log: Copied (new)
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2026/06/04 17:53:42 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/05/e1cfaafdffe6820aae90178d1cc16b/.command.out: Copied (new)
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2026/06/04 17:53:42 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/05/e1cfaafdffe6820aae90178d1cc16b/.command.log: Copied (new)
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2026/06/04 17:53:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna/659_bea-T1-TDNA-1_HLNLMDRX7_1_dna.bam: Multi-thread Copied (new)
2026/06/04 17:53:50 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/3e/d6bdd0981747bd648fae989379d7d9/.command.begin: Copied (new)
2026/06/04 17:53:50 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/3e/d6bdd0981747bd648fae989379d7d9/.command.out: Copied (new)
2026/06/04 17:53:50 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/3e/d6bdd0981747bd648fae989379d7d9/.exitcode: Copied (new)
2026/06/04 17:53:50 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/3e/d6bdd0981747bd648fae989379d7d9/.command.run: Copied (new)
2026/06/04 17:53:50 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/3e/d6bdd0981747bd648fae989379d7d9/.command.trace: Copied (new)
2026/06/04 17:53:50 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/3e/d6bdd0981747bd648fae989379d7d9/Nirvana-20260603223611.log: Copied (new)
2026/06/04 17:53:50 INFO  : ica_logs/out/Logs_Intermediates/DnaCoverageReports/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/06/04 17:53:50 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/3e/d6bdd0981747bd648fae989379d7d9/.command.sh: Copied (new)
2026/06/04 17:53:50 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/3e/d6bdd0981747bd648fae989379d7d9/.command.log: Copied (new)
2026/06/04 17:53:50 INFO  : Logs_Intermediates/FastqGeneration/Logs/Lane_2/FastqComplete.txt: Copied (new)
2026/06/04 17:53:50 INFO  : Logs_Intermediates/FastqGeneration/Logs/Lane_2/Errors.log: Copied (new)
2026/06/04 17:53:50 INFO  : Logs_Intermediates/FastqGeneration/Logs/Lane_2/Info.log: Copied (new)
2026/06/04 17:53:50 INFO  : ica_logs/out/Logs_Intermediates/Contamination/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/Spoiler-20260603225239.log: Copied (new)
2026/06/04 17:53:50 INFO  : Logs_Intermediates/FastqGeneration/Logs/Lane_2/Warnings.log: Copied (new)
2026/06/04 17:53:50 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/43/03b30ffbe9dd7c4eb8dc1ded2cfee5/.command.begin: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/43/03b30ffbe9dd7c4eb8dc1ded2cfee5/.command.err: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/out/Logs_Intermediates/Annotation/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603224137.log: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/43/03b30ffbe9dd7c4eb8dc1ded2cfee5/.command.log: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/43/03b30ffbe9dd7c4eb8dc1ded2cfee5/.command.run: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/43/03b30ffbe9dd7c4eb8dc1ded2cfee5/.command.trace: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/43/03b30ffbe9dd7c4eb8dc1ded2cfee5/.exitcode: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/43/03b30ffbe9dd7c4eb8dc1ded2cfee5/.command.out: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/43/03b30ffbe9dd7c4eb8dc1ded2cfee5/.command.sh: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/41/846aa907228e90ce6b4cb13ac5194e/Tmb/dragen_run_1780526768868_332136.log: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/09/9828a132ecec0d88f704a45671f9e4/.command.env: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/09/9828a132ecec0d88f704a45671f9e4/.command.err: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/09/9828a132ecec0d88f704a45671f9e4/.command.log: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/09/9828a132ecec0d88f704a45671f9e4/.command.out: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/41/846aa907228e90ce6b4cb13ac5194e/Tmb/dragen_syslog_1780526768860_332136.log: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/out/Logs_Intermediates/Gis/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780524508941_258036.log: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/09/9828a132ecec0d88f704a45671f9e4/.command.sh: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/09/9828a132ecec0d88f704a45671f9e4/.command.run: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/40/79e72246cc185efaeeb597dbfffc0f/DnaDragenCaller/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/40/79e72246cc185efaeeb597dbfffc0f/DnaDragenCaller/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/40/79e72246cc185efaeeb597dbfffc0f/DnaDragenCaller/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/out/Logs_Intermediates/Gis/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780524508948_258036.log: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780526527805_327339.log: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603211940.log: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780526527813_327339.log: Copied (new)
2026/06/04 17:53:51 INFO  : Logs_Intermediates/nextflow_work_logs/25/4009214082eb7207b5a2dabcf32c98/.command.err: Copied (new)
2026/06/04 17:53:51 INFO  : Logs_Intermediates/nextflow_work_logs/25/4009214082eb7207b5a2dabcf32c98/.command.out: Copied (new)
2026/06/04 17:53:51 INFO  : Logs_Intermediates/nextflow_work_logs/25/4009214082eb7207b5a2dabcf32c98/.command.log: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/40/79e72246cc185efaeeb597dbfffc0f/DnaDragenCaller/dragen_syslog_1780517973999_47132.log: Copied (new)
2026/06/04 17:53:51 INFO  : Logs_Intermediates/nextflow_work_logs/25/4009214082eb7207b5a2dabcf32c98/.command.run: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/5b/868889f7a650da63c019bdaf1ffb8d/.command.err: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/5b/868889f7a650da63c019bdaf1ffb8d/.command.begin: Copied (new)
2026/06/04 17:53:51 INFO  : Logs_Intermediates/nextflow_work_logs/25/4009214082eb7207b5a2dabcf32c98/.command.sh: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/5b/868889f7a650da63c019bdaf1ffb8d/.command.sh: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/5b/868889f7a650da63c019bdaf1ffb8d/.exitcode: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/40/79e72246cc185efaeeb597dbfffc0f/DnaDragenCaller/dragen_run_1780517974015_47132.log: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/5b/868889f7a650da63c019bdaf1ffb8d/.command.trace: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/5b/868889f7a650da63c019bdaf1ffb8d/.command.run: Copied (new)
2026/06/04 17:53:51 INFO  : Logs_Intermediates/nextflow_work_logs/26/56d875d37033ae67eb57640a4677e9/.command.out: Copied (new)
2026/06/04 17:53:51 INFO  : Logs_Intermediates/nextflow_work_logs/26/56d875d37033ae67eb57640a4677e9/.command.err: Copied (new)
2026/06/04 17:53:51 INFO  : Logs_Intermediates/nextflow_work_logs/26/56d875d37033ae67eb57640a4677e9/.command.run: Copied (new)
2026/06/04 17:53:51 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/3d/f427583b4a75cdf56ead78a635a1ca/.command.begin: Copied (new)
2026/06/04 17:53:52 INFO  : Logs_Intermediates/nextflow_work_logs/26/56d875d37033ae67eb57640a4677e9/.command.log: Copied (new)
2026/06/04 17:53:52 INFO  : Logs_Intermediates/nextflow_work_logs/26/56d875d37033ae67eb57640a4677e9/.command.sh: Copied (new)
2026/06/04 17:53:52 INFO  : 
Transferred:   	  320.074 GiB / 409.914 GiB, 78%, 1.337 GiB/s, ETA 1m7s
Transferred:         7685 / 14718, 52%
Elapsed time:       4m0.0s
Transferring:
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 93% /5.229Gi, 26.000Mi/s, 13s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 96% /4.573Gi, 32.128Mi/s, 5s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 96% /4.391Gi, 20.277Mi/s, 8s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 84% /5.364Gi, 34.387Mi/s, 24s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 78% /4.924Gi, 29.219Mi/s, 36s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 70% /5.095Gi, 20.352Mi/s, 1m15s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 79% /4.297Gi, 30.605Mi/s, 29s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 52% /4.893Gi, 22.948Mi/s, 1m43s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 55% /4.616Gi, 23.386Mi/s, 1m29s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 50% /5.032Gi, 27.781Mi/s, 1m32s
 * Logs_Intermediates/Fas…6_L002_R2_001.fastq.gz: 98% /2.138Gi, 17.299Mi/s, 1s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 44% /5.053Gi, 21.715Mi/s, 2m12s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 43% /5.199Gi, 26.828Mi/s, 1m52s
 * Logs_Intermediates/Fas…9_L002_R1_001.fastq.gz: 98% /1.820Gi, 22.519Mi/s, 1s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 44% /4.565Gi, 29.404Mi/s, 1m28s
 * Logs_Intermediates/Fas…7_L001_R1_001.fastq.gz: 96% /1.842Gi, 20.934Mi/s, 3s
 * Logs_Intermediates/Fas…7_L001_R2_001.fastq.gz: 83% /1.899Gi, 21.706Mi/s, 14s
 * Logs_Intermediates/Fas…7_L002_R1_001.fastq.gz: 92% /1.858Gi, 20.802Mi/s, 6s
 * Logs_Intermediates/Fas…7_L002_R2_001.fastq.gz: 94% /1.918Gi, 26.544Mi/s, 4s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 31% /5.390Gi, 22.806Mi/s, 2m46s
 * Logs_Intermediates/Fas…1_L001_R1_001.fastq.gz: 84% /1.918Gi, 27.075Mi/s, 11s
 * Logs_Intermediates/Fas…1_L001_R2_001.fastq.gz: 98% /1.784Gi, 26.218Mi/s, 1s
 * Logs_Intermediates/Fas…1_L002_R1_001.fastq.gz: 87% /1.918Gi, 29.097Mi/s, 8s
 * Logs_Intermediates/Fas…1_L002_R2_001.fastq.gz: 84% /1.777Gi, 23.975Mi/s, 11s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 37% /4.435Gi, 29.404Mi/s, 1m36s
 * Logs_Intermediates/Fas…0_L001_R1_001.fastq.gz: 81% /1.922Gi, 23.912Mi/s, 15s
 * Logs_Intermediates/Fas…0_L001_R2_001.fastq.gz: 69% /1.988Gi, 22.560Mi/s, 27s
 * Logs_Intermediates/Fas…0_L002_R1_001.fastq.gz: 77% /1.938Gi, 26.183Mi/s, 17s
 * Logs_Intermediates/Fas…0_L002_R2_001.fastq.gz: 76% /2.010Gi, 28.855Mi/s, 16s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 23% /4.442Gi, 21.059Mi/s, 2m45s
 * Logs_Intermediates/Fas…1_L001_R1_001.fastq.gz: 59% /1.792Gi, 23.801Mi/s, 31s
 * Logs_Intermediates/Fas…1_L001_R2_001.fastq.gz: 50% /1.785Gi, 22.830Mi/s, 39s
 * Logs_Intermediates/Fas…1_L002_R1_001.fastq.gz: 61% /1.788Gi, 30.242Mi/s, 23s
 * Logs_Intermediates/Fas…1_L002_R2_001.fastq.gz: 72% /1.777Gi, 29.587Mi/s, 17s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 17% /5.006Gi, 22.219Mi/s, 3m10s
 * Logs_Intermediates/Fas…9_L001_R1_001.fastq.gz: 53% /1.739Gi, 29.635Mi/s, 27s
 * Logs_Intermediates/Fas…9_L001_R2_001.fastq.gz: 44% /1.740Gi, 24.118Mi/s, 40s
 * Logs_Intermediates/Fas…9_L002_R1_001.fastq.gz: 45% /1.726Gi, 24.296Mi/s, 39s
 * Logs_Intermediates/Fas…9_L002_R2_001.fastq.gz: 34% /1.727Gi, 18.171Mi/s, 1m3s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 14% /5.054Gi, 27.493Mi/s, 2m40s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam:  9% /5.102Gi, 23.328Mi/s, 3m21s
 * ica_logs/work/67/bf96a…Log-20260603230640.log: 88% /71.393Mi, 3.636Mi/s, 2s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam:  7% /4.676Gi, 22.000Mi/s, 3m21s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam:  6% /4.475Gi, 22.154Mi/s, 3m12s
 * ica_logs/work/67/bf96a…Log-20260603230642.log: 51% /74.062Mi, 3.363Mi/s, 10s
 * Logs_Intermediates/Fas…6_L001_R1_001.fastq.gz: 11% /1.864Gi, 22.400Mi/s, 1m15s
 * Logs_Intermediates/Fas…6_L001_R2_001.fastq.gz: 15% /1.933Gi, 25.944Mi/s, 1m4s
 * Logs_Intermediates/Fas…6_L002_R1_001.fastq.gz: 11% /1.892Gi, 22.400Mi/s, 1m16s
 * Logs_Intermediates/Fas…6_L002_R2_001.fastq.gz: 17% /1.966Gi, 35.200Mi/s, 47s
 * Logs_Intermediates/Fas…0_L001_R1_001.fastq.gz:  5% /3.196Gi, 21.333Mi/s, 2m24s
 * Logs_Intermediates/Fas…0_L001_R2_001.fastq.gz:  4% /3.194Gi, 17.778Mi/s, 2m54s
 * Logs_Intermediates/Fas…0_L002_R1_001.fastq.gz:  6% /3.209Gi, 24.889Mi/s, 2m3s
 * Logs_Intermediates/Fas…0_L002_R2_001.fastq.gz:  6% /3.216Gi, 21.333Mi/s, 2m23s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam:  3% /4.982Gi, 20.000Mi/s, 4m7s
 * ica_logs/work/67/bf96a…af2f11ff7/.command.log: 32% /68.371Mi, 5.999Mi/s, 7s
 * ica_logs/work/67/bf96a…af2f11ff7/.command.out: 97% /68.371Mi, 18.332Mi/s, 0s
 * ica_logs/work/67/bf96a…daf1ffb8d/.command.log:  5% /70.000Mi, 0/s, -
 * ica_logs/work/67/bf96a…daf1ffb8d/.command.out:  1% /70.000Mi, 0/s, -
 * ica_logs/work/f9/f8f98…8a635a1ca/.command.err:  0% /0, 0/s, -
 * ica_logs/work/f9/f8f98…8a635a1ca/.command.log:100% /1.711Ki, 0/s, -
 * ica_logs/work/f9/f8f98…8a635a1ca/.command.out:  0% /0, 0/s, -
 * ica_logs/work/f9/f8f98…8a635a1ca/.command.run: transferring
 * ica_logs/work/f9/f8f98…78a635a1ca/.command.sh: transferring
 * ica_logs/work/f9/f8f98…635a1ca/.command.trace: transferring

2026/06/04 17:53:52 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/3d/f427583b4a75cdf56ead78a635a1ca/.command.err: Copied (new)
2026/06/04 17:53:52 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/3d/f427583b4a75cdf56ead78a635a1ca/.command.out: Copied (new)
2026/06/04 17:53:52 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/3d/f427583b4a75cdf56ead78a635a1ca/.command.log: Copied (new)
2026/06/04 17:53:52 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/3d/f427583b4a75cdf56ead78a635a1ca/.command.sh: Copied (new)
2026/06/04 17:53:52 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/3d/f427583b4a75cdf56ead78a635a1ca/.command.run: Copied (new)
2026/06/04 17:53:52 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/3d/f427583b4a75cdf56ead78a635a1ca/.command.trace: Copied (new)
2026/06/04 17:53:52 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/3d/f427583b4a75cdf56ead78a635a1ca/.exitcode: Copied (new)
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2026/06/04 17:53:58 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0d/3e1530cfc461d86e531194ed9a2430/.command.err: Copied (new)
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2026/06/04 17:53:59 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0c/380272ce6e4f25bb05990cdba2bde4/.command.err: Copied (new)
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2026/06/04 17:53:59 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0c/380272ce6e4f25bb05990cdba2bde4/.command.run: Copied (new)
2026/06/04 17:53:59 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0c/380272ce6e4f25bb05990cdba2bde4/.command.out: Copied (new)
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2026/06/04 17:53:59 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780526044958_314144.log: Copied (new)
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2026/06/04 17:53:59 INFO  : ica_logs/out/Logs_Intermediates/Gis/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780524207804_249054.log: Copied (new)
2026/06/04 17:53:59 INFO  : ica_logs/out/Logs_Intermediates/Gis/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780524207797_249054.log: Copied (new)
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2026/06/04 17:53:59 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/40/b2a42bbbbef476a37d4758b86f7bfe/.command.err: Copied (new)
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2026/06/04 17:53:59 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/44/245744e34bf80e968c5d0f093591ec/.command.begin: Copied (new)
2026/06/04 17:53:59 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/40/b2a42bbbbef476a37d4758b86f7bfe/.exitcode: Copied (new)
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2026/06/04 17:53:59 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/47/cbf3026eed73f845bc5ae659fb1ee7/.exitcode: Copied (new)
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2026/06/04 17:54:00 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/4d/fadb06c9be9316041d953ade94cb69/.command.out: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/4c/7950a6fe78c71ec045906158fec85c/.command.err: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/4c/7950a6fe78c71ec045906158fec85c/.command.trace: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/4c/7950a6fe78c71ec045906158fec85c/.exitcode: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/4c/7950a6fe78c71ec045906158fec85c/.command.sh: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0a/fed44bd1d52f92585d49ac10bf3384/.command.err: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780525116077_277228.log: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0a/fed44bd1d52f92585d49ac10bf3384/.command.out: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0a/fed44bd1d52f92585d49ac10bf3384/.command.run: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/43/4ea91102c7fef07f0f8ed0395fc334/.command.begin: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780519752526_95160.log: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0a/fed44bd1d52f92585d49ac10bf3384/.command.log: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780525116068_277228.log: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0a/fed44bd1d52f92585d49ac10bf3384/.command.sh: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/out/Logs_Intermediates/DnaCoverageReports/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna/gen_coverage_reports.log: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/43/4ea91102c7fef07f0f8ed0395fc334/.command.err: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780519752542_95160.log: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/43/4ea91102c7fef07f0f8ed0395fc334/.command.log: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/43/4ea91102c7fef07f0f8ed0395fc334/.command.out: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/43/4ea91102c7fef07f0f8ed0395fc334/.command.run: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/43/4ea91102c7fef07f0f8ed0395fc334/.exitcode: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/43/4ea91102c7fef07f0f8ed0395fc334/.command.sh: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/43/4ea91102c7fef07f0f8ed0395fc334/.command.trace: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/out/Logs_Intermediates/Annotation/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603224732.log: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0c/7441b567f787b8a044406ce3312e50/.command.err: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603223440.log: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0c/7441b567f787b8a044406ce3312e50/.command.out: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0c/7441b567f787b8a044406ce3312e50/.command.run: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0c/7441b567f787b8a044406ce3312e50/.command.log: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0c/7441b567f787b8a044406ce3312e50/.command.sh: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/62/b52519ec16ad06394fac5e58c30cde/.command.err: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/62/b52519ec16ad06394fac5e58c30cde/.command.begin: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/out/Logs_Intermediates/Gis/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780523477698_227450.log: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/out/Logs_Intermediates/Gis/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780523477691_227450.log: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/62/b52519ec16ad06394fac5e58c30cde/.command.run: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/62/b52519ec16ad06394fac5e58c30cde/.exitcode: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/62/b52519ec16ad06394fac5e58c30cde/.command.trace: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/out/Logs_Intermediates/Contamination/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/Spoiler-20260603225601.log: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/62/b52519ec16ad06394fac5e58c30cde/.command.sh: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0e/545598b7e4889af2a8371edb39e427/.command.err: Copied (new)
2026/06/04 17:54:00 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0e/545598b7e4889af2a8371edb39e427/.command.out: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0e/545598b7e4889af2a8371edb39e427/.command.log: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0e/545598b7e4889af2a8371edb39e427/.command.sh: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780524776635_268410.log: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0e/545598b7e4889af2a8371edb39e427/.command.run: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/3e/fd434b9952e26a588fd85c227fb151/Tmb/dragen_syslog_1780525978067_311066.log: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780526736744_330558.log: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/3e/fd434b9952e26a588fd85c227fb151/Tmb/dragen_run_1780525978075_311066.log: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603201841.log: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/47/23a804706437fd6392901bbae74051/.command.begin: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780526736736_330558.log: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/LrCalculator-20260603223440.log: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/47/23a804706437fd6392901bbae74051/.command.err: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/5e/f7de9146f992239d2b32fa1257b1a3/.command.log: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/47/23a804706437fd6392901bbae74051/.command.out: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/47/23a804706437fd6392901bbae74051/.command.run: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/4f/854bb1127d69bade7b0f325c1f3806/.command.begin: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/47/23a804706437fd6392901bbae74051/.command.log: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/47/23a804706437fd6392901bbae74051/.command.sh: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/47/23a804706437fd6392901bbae74051/.command.trace: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/4f/854bb1127d69bade7b0f325c1f3806/.command.err: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/47/23a804706437fd6392901bbae74051/.exitcode: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/4f/854bb1127d69bade7b0f325c1f3806/.command.sh: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/4f/854bb1127d69bade7b0f325c1f3806/.exitcode: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/4f/854bb1127d69bade7b0f325c1f3806/.command.trace: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/40/c668116b9e82117ce72e8c4a83696f/.command.begin: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/4f/854bb1127d69bade7b0f325c1f3806/.command.out: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/4f/854bb1127d69bade7b0f325c1f3806/.command.run: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/4f/854bb1127d69bade7b0f325c1f3806/.command.log: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/40/c668116b9e82117ce72e8c4a83696f/.command.err: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/5e/f7de9146f992239d2b32fa1257b1a3/.command.out: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/40/c668116b9e82117ce72e8c4a83696f/.command.out: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/40/c668116b9e82117ce72e8c4a83696f/.command.run: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/40/c668116b9e82117ce72e8c4a83696f/.command.log: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/40/c668116b9e82117ce72e8c4a83696f/.exitcode: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/40/c668116b9e82117ce72e8c4a83696f/.command.trace: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/4d/c48001e9d799d128a0c0e06a05f28f/.command.begin: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/4d/c48001e9d799d128a0c0e06a05f28f/.command.err: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/40/c668116b9e82117ce72e8c4a83696f/.command.sh: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/3f/8d10ec25b78fe2fd28ebcff7b9e611/SampleSheetReader/ReaderService-20260603200834.log: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/4d/c48001e9d799d128a0c0e06a05f28f/.exitcode: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/4d/c48001e9d799d128a0c0e06a05f28f/.command.out: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/4d/c48001e9d799d128a0c0e06a05f28f/.command.log: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/4e/8617a429364de74de15973da6b6628/.command.begin: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/4d/c48001e9d799d128a0c0e06a05f28f/.command.run: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/4e/8617a429364de74de15973da6b6628/.command.err: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/4d/c48001e9d799d128a0c0e06a05f28f/.command.trace: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/out/Logs_Intermediates/DnaDragenExonCnvCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780524776627_268410.log: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/4d/c48001e9d799d128a0c0e06a05f28f/.command.sh: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/4e/8617a429364de74de15973da6b6628/.command.out: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/4e/8617a429364de74de15973da6b6628/.command.log: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/4e/8617a429364de74de15973da6b6628/.exitcode: Copied (new)
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2026/06/04 17:54:01 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/4e/8617a429364de74de15973da6b6628/.command.trace: Copied (new)
2026/06/04 17:54:01 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/4e/8617a429364de74de15973da6b6628/.command.sh: Copied (new)
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2026/06/04 17:54:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna.bam: Multi-thread Copied (new)
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2026/06/04 17:54:04 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603224249.log: Copied (new)
2026/06/04 17:54:04 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0f/91aacd0f4166280fec59fd8783d1df/.command.env: Copied (new)
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2026/06/04 17:54:04 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0f/91aacd0f4166280fec59fd8783d1df/.command.run: Copied (new)
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2026/06/04 17:54:06 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/10/e74dd3d48d65b46dfce1b60fc1c506/.command.err: Copied (new)
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2026/06/04 17:54:06 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/12/daaa2d0833edf1c5896d8fd0e8d80d/.command.err: Copied (new)
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2026/06/04 17:54:06 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/12/daaa2d0833edf1c5896d8fd0e8d80d/.command.run: Copied (new)
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2026/06/04 17:54:06 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/LrCalculator-20260603223929.log: Copied (new)
2026/06/04 17:54:06 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/12/daaa2d0833edf1c5896d8fd0e8d80d/.command.sh: Copied (new)
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2026/06/04 17:54:07 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/14/7178db22487a4fdcaa14a40111678c/.command.err: Copied (new)
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2026/06/04 17:54:07 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/15/08f170eda63fdc0461a33d63df66d1/.command.err: Copied (new)
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2026/06/04 17:54:07 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/15/08f170eda63fdc0461a33d63df66d1/.command.log: Copied (new)
2026/06/04 17:54:07 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/0f/c445eab524660993f1224ecd3bb05e/.command.out: Copied (new)
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2026/06/04 17:54:07 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/16/1ad92224d09af2583553a15238af92/.command.out: Copied (new)
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2026/06/04 17:54:07 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/16/1ad92224d09af2583553a15238af92/.command.log: Copied (new)
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2026/06/04 17:54:07 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603224247.log: Copied (new)
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2026/06/04 17:54:07 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/16/1ad92224d09af2583553a15238af92/.command.err: Copied (new)
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2026/06/04 17:54:08 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/16/1ad92224d09af2583553a15238af92/.command.sh: Copied (new)
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2026/06/04 17:54:08 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/14/90b45705f9712d832dc9aec3631c0b/.command.err: Copied (new)
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2026/06/04 17:54:09 INFO  : ica_logs/out/Logs_Intermediates/LrAnnotation/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603224958.log: Copied (new)
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2026/06/04 17:54:09 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/68/411dd01303b15291089bb58b64b9c2/.command.out: Copied (new)
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2026/06/04 17:54:09 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/68/411dd01303b15291089bb58b64b9c2/.exitcode: Copied (new)
2026/06/04 17:54:09 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/65/f393cdcbcec2a3d77dfa25667894ca/.command.begin: Copied (new)
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2026/06/04 17:54:09 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/65/f393cdcbcec2a3d77dfa25667894ca/.command.log: Copied (new)
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2026/06/04 17:54:09 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/65/f393cdcbcec2a3d77dfa25667894ca/.command.trace: Copied (new)
2026/06/04 17:54:09 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/65/f393cdcbcec2a3d77dfa25667894ca/.command.err: Copied (new)
2026/06/04 17:54:09 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/68/411dd01303b15291089bb58b64b9c2/.command.log: Copied (new)
2026/06/04 17:54:09 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/65/f393cdcbcec2a3d77dfa25667894ca/Nirvana-20260603223852.log: Copied (new)
2026/06/04 17:54:09 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/68/411dd01303b15291089bb58b64b9c2/.command.trace: Copied (new)
2026/06/04 17:54:09 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/74/6bd6f781c12496eeecf1d5d9dd15b2/.command.begin: Copied (new)
2026/06/04 17:54:09 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/65/f393cdcbcec2a3d77dfa25667894ca/.exitcode: Copied (new)
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2026/06/04 17:54:09 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/74/6bd6f781c12496eeecf1d5d9dd15b2/.command.sh: Copied (new)
2026/06/04 17:54:09 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/71/84b94e22317a8d28edfa8d07307788/.command.log: Copied (new)
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2026/06/04 17:54:09 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/61/3de6990985191f20ac7c3bfd7e3e3b/.command.begin: Copied (new)
2026/06/04 17:54:09 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/74/6bd6f781c12496eeecf1d5d9dd15b2/.command.run: Copied (new)
2026/06/04 17:54:09 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/74/6bd6f781c12496eeecf1d5d9dd15b2/.command.log: Copied (new)
2026/06/04 17:54:09 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/74/6bd6f781c12496eeecf1d5d9dd15b2/.exitcode: Copied (new)
2026/06/04 17:54:09 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/61/3de6990985191f20ac7c3bfd7e3e3b/.command.log: Copied (new)
2026/06/04 17:54:09 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/61/3de6990985191f20ac7c3bfd7e3e3b/.exitcode: Copied (new)
2026/06/04 17:54:09 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/74/6bd6f781c12496eeecf1d5d9dd15b2/.command.out: Copied (new)
2026/06/04 17:54:09 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/74/6bd6f781c12496eeecf1d5d9dd15b2/.command.trace: Copied (new)
2026/06/04 17:54:09 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/61/3de6990985191f20ac7c3bfd7e3e3b/.command.out: Copied (new)
2026/06/04 17:54:09 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/61/3de6990985191f20ac7c3bfd7e3e3b/.command.sh: Copied (new)
2026/06/04 17:54:09 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/5e/2f7c81707828a87ee659d296168822/Tmb/dragen_syslog_1780526736736_330558.log: Copied (new)
2026/06/04 17:54:09 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/61/3de6990985191f20ac7c3bfd7e3e3b/.command.trace: Copied (new)
2026/06/04 17:54:09 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/5e/2f7c81707828a87ee659d296168822/Tmb/dragen_run_1780526736744_330558.log: Copied (new)
2026/06/04 17:54:09 INFO  : Logs_Intermediates/nextflow_work_logs/37/4e178cd62cfb398f90470ecc6bdf91/.command.err: Copied (new)
2026/06/04 17:54:09 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/17/c97cc789f76d68715247cb1883d589/.command.sh: Copied (new)
2026/06/04 17:54:09 INFO  : Logs_Intermediates/nextflow_work_logs/37/4e178cd62cfb398f90470ecc6bdf91/.command.out: Copied (new)
2026/06/04 17:54:09 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/17/c97cc789f76d68715247cb1883d589/.command.err: Copied (new)
2026/06/04 17:54:09 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/61/3de6990985191f20ac7c3bfd7e3e3b/.command.run: Copied (new)
2026/06/04 17:54:09 INFO  : Logs_Intermediates/nextflow_work_logs/37/4e178cd62cfb398f90470ecc6bdf91/.command.log: Copied (new)
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2026/06/04 17:54:10 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/5f/b8a7f9e8d04be8201deca6aa33d198/.command.begin: Copied (new)
2026/06/04 17:54:10 INFO  : Logs_Intermediates/nextflow_work_logs/37/4e178cd62cfb398f90470ecc6bdf91/.command.sh: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/17/c97cc789f76d68715247cb1883d589/.command.out: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/17/c97cc789f76d68715247cb1883d589/.command.run: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/5f/b8a7f9e8d04be8201deca6aa33d198/.command.err: Copied (new)
2026/06/04 17:54:10 INFO  : Logs_Intermediates/nextflow_work_logs/37/4e178cd62cfb398f90470ecc6bdf91/.command.run: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/17/c97cc789f76d68715247cb1883d589/.command.log: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/5f/b8a7f9e8d04be8201deca6aa33d198/.command.out: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/5f/b8a7f9e8d04be8201deca6aa33d198/.exitcode: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/5f/b8a7f9e8d04be8201deca6aa33d198/.command.log: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603204717.log: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/5f/b8a7f9e8d04be8201deca6aa33d198/1173_CPJ-T1-TDNA-01_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/7b/ad612ee35657b3f00a6b566868b4fd/.command.begin: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/5f/b8a7f9e8d04be8201deca6aa33d198/.command.trace: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/5f/b8a7f9e8d04be8201deca6aa33d198/.command.run: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/5f/b8a7f9e8d04be8201deca6aa33d198/.command.sh: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780525935211_309039.log: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780525935203_309039.log: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/7b/ad612ee35657b3f00a6b566868b4fd/.command.err: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/5c/610d52e4d8bba11ec575d0e827d69f/LrCalculator/LrCalculator-20260603223926.log: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/71/84b94e22317a8d28edfa8d07307788/.command.out: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/7b/ad612ee35657b3f00a6b566868b4fd/.command.sh: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/7b/ad612ee35657b3f00a6b566868b4fd/.exitcode: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/65/a16ee5812399f0ab7c0add0449f113/.command.err: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/65/a16ee5812399f0ab7c0add0449f113/.command.begin: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/7b/ad612ee35657b3f00a6b566868b4fd/.command.run: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/7b/ad612ee35657b3f00a6b566868b4fd/.command.trace: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/out/Logs_Intermediates/LrCalculator/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna/LrCalculator-20260603224958.log: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/6f/fff133bc4467356e8321cd57a40e84/.command.log: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/65/a16ee5812399f0ab7c0add0449f113/.command.out: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/65/a16ee5812399f0ab7c0add0449f113/.command.trace: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/65/a16ee5812399f0ab7c0add0449f113/.command.run: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/65/a16ee5812399f0ab7c0add0449f113/.exitcode: Copied (new)
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2026/06/04 17:54:10 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/61/9b5c3c6bcf8745bf1b33d86debc04d/.command.begin: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/65/a16ee5812399f0ab7c0add0449f113/659_byZ-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/65/a16ee5812399f0ab7c0add0449f113/.command.log: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/61/9b5c3c6bcf8745bf1b33d86debc04d/.command.log: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/61/9b5c3c6bcf8745bf1b33d86debc04d/.exitcode: Copied (new)
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2026/06/04 17:54:10 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/61/9b5c3c6bcf8745bf1b33d86debc04d/.command.run: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/18/58a3d595b47bdf1c2706b326ae93b1/.command.err: Copied (new)
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2026/06/04 17:54:10 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/18/58a3d595b47bdf1c2706b326ae93b1/.command.out: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/72/360d578ef8b26ecbf0a61665aaa512/.command.begin: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/61/9b5c3c6bcf8745bf1b33d86debc04d/.command.trace: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/61/9b5c3c6bcf8745bf1b33d86debc04d/.command.out: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/18/58a3d595b47bdf1c2706b326ae93b1/.command.run: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/18/58a3d595b47bdf1c2706b326ae93b1/.command.log: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/72/360d578ef8b26ecbf0a61665aaa512/.command.err: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/72/360d578ef8b26ecbf0a61665aaa512/.command.log: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/72/360d578ef8b26ecbf0a61665aaa512/.command.sh: Copied (new)
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2026/06/04 17:54:10 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/72/360d578ef8b26ecbf0a61665aaa512/.command.trace: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/72/360d578ef8b26ecbf0a61665aaa512/.command.out: Copied (new)
2026/06/04 17:54:10 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780526134088_314794.log: Copied (new)
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2026/06/04 17:54:11 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1a/a2104882081bc5de0ea0598019af1a/.command.log: Copied (new)
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2026/06/04 17:54:11 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/81/7d4c141d381a0f4d468b7d80905df1/.command.begin: Copied (new)
2026/06/04 17:54:11 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1a/a2104882081bc5de0ea0598019af1a/.command.run: Copied (new)
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2026/06/04 17:54:11 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780526494202_325759.log: Copied (new)
2026/06/04 17:54:11 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780526494209_325759.log: Copied (new)
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2026/06/04 17:54:11 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/81/7d4c141d381a0f4d468b7d80905df1/.exitcode: Copied (new)
2026/06/04 17:54:11 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1b/064eac8c209ad3a505919a71cf515a/.command.err: Copied (new)
2026/06/04 17:54:11 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1b/064eac8c209ad3a505919a71cf515a/.command.out: Copied (new)
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2026/06/04 17:54:11 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/81/7d4c141d381a0f4d468b7d80905df1/.command.sh: Copied (new)
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2026/06/04 17:54:11 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/81/7d4c141d381a0f4d468b7d80905df1/.command.trace: Copied (new)
2026/06/04 17:54:11 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1b/064eac8c209ad3a505919a71cf515a/.command.log: Copied (new)
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2026/06/04 17:54:11 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1b/064eac8c209ad3a505919a71cf515a/.command.sh: Copied (new)
2026/06/04 17:54:11 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1b/064eac8c209ad3a505919a71cf515a/.command.run: Copied (new)
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2026/06/04 17:54:11 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/64/e28be01e67116cb04e87e1ca6908dd/.command.out: Copied (new)
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2026/06/04 17:54:11 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/6a/ceebf7ee6772efa3fb4dc80571df97/.command.begin: Copied (new)
2026/06/04 17:54:11 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/7c/9a5a5a29caccadcc46c70fe4d4e368/.command.trace: Copied (new)
2026/06/04 17:54:11 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/6a/ceebf7ee6772efa3fb4dc80571df97/.command.err: Copied (new)
2026/06/04 17:54:11 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/6a/ceebf7ee6772efa3fb4dc80571df97/.exitcode: Copied (new)
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2026/06/04 17:54:11 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/7c/9a5a5a29caccadcc46c70fe4d4e368/gen_coverage_reports.log: Copied (new)
2026/06/04 17:54:11 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/6a/ceebf7ee6772efa3fb4dc80571df97/.command.run: Copied (new)
2026/06/04 17:54:11 INFO  : Logs_Intermediates/nextflow_work_logs/3a/abe6d86868d224479041b022465567/.command.err: Copied (new)
2026/06/04 17:54:11 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/6a/ceebf7ee6772efa3fb4dc80571df97/.command.out: Copied (new)
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2026/06/04 17:54:11 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/6a/ceebf7ee6772efa3fb4dc80571df97/.command.trace: Copied (new)
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2026/06/04 17:54:11 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1a/d2ad1974d198c58693d71f53c62ef2/.command.log: Copied (new)
2026/06/04 17:54:11 INFO  : Logs_Intermediates/nextflow_work_logs/3a/abe6d86868d224479041b022465567/.command.run: Copied (new)
2026/06/04 17:54:12 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1a/d2ad1974d198c58693d71f53c62ef2/.command.err: Copied (new)
2026/06/04 17:54:12 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1a/d2ad1974d198c58693d71f53c62ef2/.command.out: Copied (new)
2026/06/04 17:54:12 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/77/fdee103474316d93e0b3d9f0383aca/.command.err: Copied (new)
2026/06/04 17:54:12 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/77/fdee103474316d93e0b3d9f0383aca/.command.begin: Copied (new)
2026/06/04 17:54:12 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/77/fdee103474316d93e0b3d9f0383aca/.command.log: Copied (new)
2026/06/04 17:54:12 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1a/d2ad1974d198c58693d71f53c62ef2/.command.run: Copied (new)
2026/06/04 17:54:12 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/77/fdee103474316d93e0b3d9f0383aca/.command.sh: Copied (new)
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2026/06/04 17:54:12 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/77/fdee103474316d93e0b3d9f0383aca/.command.out: Copied (new)
2026/06/04 17:54:12 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/77/fdee103474316d93e0b3d9f0383aca/.command.run: Copied (new)
2026/06/04 17:54:12 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1a/d2ad1974d198c58693d71f53c62ef2/.command.sh: Copied (new)
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2026/06/04 17:54:12 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/6a/3dae42f7b5ea6bb049f61ebda596c5/.command.begin: Copied (new)
2026/06/04 17:54:12 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603205805.log: Copied (new)
2026/06/04 17:54:12 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780526262460_321265.log: Copied (new)
2026/06/04 17:54:12 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780526262452_321265.log: Copied (new)
2026/06/04 17:54:12 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/6a/3dae42f7b5ea6bb049f61ebda596c5/.command.err: Copied (new)
2026/06/04 17:54:12 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/6a/3dae42f7b5ea6bb049f61ebda596c5/.command.env: Copied (new)
2026/06/04 17:54:12 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/6a/3dae42f7b5ea6bb049f61ebda596c5/.command.out: Copied (new)
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2026/06/04 17:54:12 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/77/fdee103474316d93e0b3d9f0383aca/.command.trace: Copied (new)
2026/06/04 17:54:12 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/6a/3dae42f7b5ea6bb049f61ebda596c5/.command.sh: Copied (new)
2026/06/04 17:54:12 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/6a/3dae42f7b5ea6bb049f61ebda596c5/.exitcode: Copied (new)
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2026/06/04 17:54:12 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/89/cd656cbc12d32c299e669133e693f4/.command.begin: Copied (new)
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2026/06/04 17:54:12 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/60/cff0fd24bf8bfc98214356faa00f57/Gis/dragen_syslog_1780525395983_289999.log: Copied (new)
2026/06/04 17:54:12 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/89/cd656cbc12d32c299e669133e693f4/.command.err: Copied (new)
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2026/06/04 17:54:12 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/89/cd656cbc12d32c299e669133e693f4/.command.run: Copied (new)
2026/06/04 17:54:12 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1c/a2c17218953218b43b00ff22078a9d/.command.err: Copied (new)
2026/06/04 17:54:12 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/89/cd656cbc12d32c299e669133e693f4/.exitcode: Copied (new)
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2026/06/04 17:54:12 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/79/cd9bb05b47538bb6611cbcded93c49/.command.out: Copied (new)
2026/06/04 17:54:12 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1b/27f9f89a6ec727bee583f8ee4db873/.command.err: Copied (new)
2026/06/04 17:54:12 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1c/a2c17218953218b43b00ff22078a9d/.command.run: Copied (new)
2026/06/04 17:54:12 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1c/a2c17218953218b43b00ff22078a9d/.command.log: Copied (new)
2026/06/04 17:54:12 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1c/a2c17218953218b43b00ff22078a9d/.command.sh: Copied (new)
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2026/06/04 17:54:12 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1c/a2c17218953218b43b00ff22078a9d/.command.out: Copied (new)
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2026/06/04 17:54:12 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1b/27f9f89a6ec727bee583f8ee4db873/.command.sh: Copied (new)
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2026/06/04 17:54:12 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1b/27f9f89a6ec727bee583f8ee4db873/.command.run: Copied (new)
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2026/06/04 17:54:12 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/79/161feb2444bcb0aa2bd7dc2cbc0f7b/.command.out: Copied (new)
2026/06/04 17:54:12 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/79/161feb2444bcb0aa2bd7dc2cbc0f7b/.exitcode: Copied (new)
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2026/06/04 17:54:12 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1b/27f9f89a6ec727bee583f8ee4db873/.command.log: Copied (new)
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2026/06/04 17:54:12 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1b/c91599a76afa34cd8eb61584589514/.command.out: Copied (new)
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2026/06/04 17:54:12 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1b/c91599a76afa34cd8eb61584589514/.command.err: Copied (new)
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2026/06/04 17:54:12 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1b/c91599a76afa34cd8eb61584589514/.command.run: Copied (new)
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2026/06/04 17:54:12 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780526768868_332136.log: Copied (new)
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2026/06/04 17:54:13 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/1d/7eb94d3f8eb8bd5040a5366549eae6/.command.err: Copied (new)
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2026/06/04 17:54:13 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/70/52c5d4e7bfedbbc6a34f773889a6a3/.command.err: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/70/52c5d4e7bfedbbc6a34f773889a6a3/.command.trace: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/70/5262710a46d3b43be74bfcb81cd0f8/.command.run: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/70/52c5d4e7bfedbbc6a34f773889a6a3/.command.log: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/70/52c5d4e7bfedbbc6a34f773889a6a3/.exitcode: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/70/52c5d4e7bfedbbc6a34f773889a6a3/.command.sh: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/70/5262710a46d3b43be74bfcb81cd0f8/.command.trace: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/62/5772bf4d8a360a2e522ea5aa6f8071/LrCalculator/LrCalculator-20260603223443.log: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/70/52c5d4e7bfedbbc6a34f773889a6a3/.command.run: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/70/5262710a46d3b43be74bfcb81cd0f8/gen_coverage_reports.log: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/7d/0d6869c95d85572aacd6f138e921e5/.command.err: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/7d/0d6869c95d85572aacd6f138e921e5/.command.begin: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/70/52c5d4e7bfedbbc6a34f773889a6a3/gen_coverage_reports.log: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/7d/0d6869c95d85572aacd6f138e921e5/.command.run: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/7d/0d6869c95d85572aacd6f138e921e5/.command.sh: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/7d/0d6869c95d85572aacd6f138e921e5/.command.trace: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/7d/0d6869c95d85572aacd6f138e921e5/.exitcode: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/7d/0d6869c95d85572aacd6f138e921e5/.command.log: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/7d/0d6869c95d85572aacd6f138e921e5/.command.out: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/7d/0d6869c95d85572aacd6f138e921e5/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/74/b1d4186e8214faeacb773bdd05ebbe/DnaDragenExonCnvCaller/dragen_run_1780526069227_307920.log: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/83/0cb0de84bb21b659d0e19adaf69ff4/.command.begin: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780526427939_322601.log: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/83/0cb0de84bb21b659d0e19adaf69ff4/.command.err: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/83/0cb0de84bb21b659d0e19adaf69ff4/.command.log: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_syslog_1780526427931_322601.log: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/7b/ad612ee35657b3f00a6b566868b4fd/.command.out: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/83/0cb0de84bb21b659d0e19adaf69ff4/.exitcode: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/83/0cb0de84bb21b659d0e19adaf69ff4/.command.out: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/83/0cb0de84bb21b659d0e19adaf69ff4/.command.run: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/83/0cb0de84bb21b659d0e19adaf69ff4/.command.sh: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/8b/8a9ce00b015226480295246125ae57/.command.begin: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/Nirvana-20260603204042.log: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/8b/8a9ce00b015226480295246125ae57/.command.err: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/8b/8a9ce00b015226480295246125ae57/.command.log: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/8b/8a9ce00b015226480295246125ae57/.command.out: Copied (new)
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2026/06/04 17:54:13 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/83/0cb0de84bb21b659d0e19adaf69ff4/.command.trace: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/75/8e7e2edc5662ec08560dcb33755e00/.command.begin: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/8b/8a9ce00b015226480295246125ae57/.exitcode: Copied (new)
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2026/06/04 17:54:13 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/8b/8a9ce00b015226480295246125ae57/.command.sh: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/75/8e7e2edc5662ec08560dcb33755e00/.exitcode: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/71/319cf150e8149637b8547ba2e317c3/.command.begin: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/75/8e7e2edc5662ec08560dcb33755e00/.command.run: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/75/8e7e2edc5662ec08560dcb33755e00/.command.err: Copied (new)
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2026/06/04 17:54:13 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/71/319cf150e8149637b8547ba2e317c3/.command.err: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/75/8e7e2edc5662ec08560dcb33755e00/.command.trace: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/75/8e7e2edc5662ec08560dcb33755e00/.command.sh: Copied (new)
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2026/06/04 17:54:13 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/71/319cf150e8149637b8547ba2e317c3/.command.log: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/75/8e7e2edc5662ec08560dcb33755e00/.command.out: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/71/319cf150e8149637b8547ba2e317c3/.command.sh: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/71/319cf150e8149637b8547ba2e317c3/.exitcode: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/20/337e24a9def6a1fcb505da6d34fe13/.command.log: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/20/337e24a9def6a1fcb505da6d34fe13/.command.err: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/71/319cf150e8149637b8547ba2e317c3/.command.run: Copied (new)
2026/06/04 17:54:13 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/71/319cf150e8149637b8547ba2e317c3/.command.trace: Copied (new)
2026/06/04 17:54:14 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/20/337e24a9def6a1fcb505da6d34fe13/.command.out: Copied (new)
2026/06/04 17:54:14 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/7e/2998f24d5d22eba45e442ebdd16f56/.command.begin: Copied (new)
2026/06/04 17:54:14 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/20/337e24a9def6a1fcb505da6d34fe13/.command.sh: Copied (new)
2026/06/04 17:54:14 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/7e/2998f24d5d22eba45e442ebdd16f56/.command.sh: Copied (new)
2026/06/04 17:54:14 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/7e/2998f24d5d22eba45e442ebdd16f56/.exitcode: Copied (new)
2026/06/04 17:54:14 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/7e/2998f24d5d22eba45e442ebdd16f56/.command.trace: Copied (new)
2026/06/04 17:54:14 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/94/712e9437120e31b6322837416e4741/.command.begin: Copied (new)
2026/06/04 17:54:14 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/7e/2998f24d5d22eba45e442ebdd16f56/.command.run: Copied (new)
2026/06/04 17:54:14 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/7e/2998f24d5d22eba45e442ebdd16f56/.command.out: Copied (new)
2026/06/04 17:54:14 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/94/712e9437120e31b6322837416e4741/.command.err: Copied (new)
2026/06/04 17:54:14 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/94/712e9437120e31b6322837416e4741/.command.log: Copied (new)
2026/06/04 17:54:14 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/7e/2998f24d5d22eba45e442ebdd16f56/.command.err: Copied (new)
2026/06/04 17:54:14 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/94/712e9437120e31b6322837416e4741/.command.out: Copied (new)
2026/06/04 17:54:14 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/94/712e9437120e31b6322837416e4741/.command.sh: Copied (new)
2026/06/04 17:54:14 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/7e/2998f24d5d22eba45e442ebdd16f56/.command.log: Copied (new)
2026/06/04 17:54:14 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/8b/8a9ce00b015226480295246125ae57/.command.trace: Copied (new)
2026/06/04 17:54:14 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/94/712e9437120e31b6322837416e4741/.command.run: Copied (new)
2026/06/04 17:54:14 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/94/712e9437120e31b6322837416e4741/.exitcode: Copied (new)
2026/06/04 17:54:14 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/94/712e9437120e31b6322837416e4741/.command.trace: Copied (new)
2026/06/04 17:54:14 INFO  : Logs_Intermediates/nextflow_work_logs/3d/d376705b7e9aeab9c51b74eefe9e57/.command.env: Copied (new)
2026/06/04 17:54:14 INFO  : ica_logs/out/Logs_Intermediates/Tmb/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/dragen_run_1780526330364_324424.log: Copied (new)
2026/06/04 17:54:14 INFO  : Logs_Intermediates/nextflow_work_logs/3d/d376705b7e9aeab9c51b74eefe9e57/.command.out: Copied (new)
2026/06/04 17:54:14 INFO  : Logs_Intermediates/nextflow_work_logs/3d/d376705b7e9aeab9c51b74eefe9e57/.command.err: Copied (new)
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2026/06/04 17:54:14 INFO  : Logs_Intermediates/nextflow_work_logs/3e/209ac797e7ddc3ad32c0f2072f2ead/.command.err: Copied (new)
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2026/06/04 17:54:14 INFO  : Logs_Intermediates/nextflow_work_logs/3d/d376705b7e9aeab9c51b74eefe9e57/.command.sh: Copied (new)
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2026/06/04 17:54:14 INFO  : Logs_Intermediates/nextflow_work_logs/3e/209ac797e7ddc3ad32c0f2072f2ead/.command.out: Copied (new)
2026/06/04 17:54:14 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/20/337e24a9def6a1fcb505da6d34fe13/.command.run: Copied (new)
2026/06/04 17:54:14 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/87/61c23bbcff66b25fa29825bcaf269c/.command.begin: Copied (new)
2026/06/04 17:54:14 INFO  : Logs_Intermediates/nextflow_work_logs/3d/d376705b7e9aeab9c51b74eefe9e57/.command.run: Copied (new)
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2026/06/04 17:54:14 INFO  : Logs_Intermediates/nextflow_work_logs/3e/209ac797e7ddc3ad32c0f2072f2ead/.command.log: Copied (new)
2026/06/04 17:54:14 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/87/61c23bbcff66b25fa29825bcaf269c/.command.env: Copied (new)
2026/06/04 17:54:14 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/87/61c23bbcff66b25fa29825bcaf269c/.command.err: Copied (new)
2026/06/04 17:54:14 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/87/61c23bbcff66b25fa29825bcaf269c/.command.out: Copied (new)
2026/06/04 17:54:14 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/87/61c23bbcff66b25fa29825bcaf269c/.exitcode: Copied (new)
2026/06/04 17:54:14 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/87/61c23bbcff66b25fa29825bcaf269c/.command.run: Copied (new)
2026/06/04 17:54:14 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/87/61c23bbcff66b25fa29825bcaf269c/.command.log: Copied (new)
2026/06/04 17:54:14 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/21/ac4971e09465212c546f6aaf1751eb/.command.out: Copied (new)
2026/06/04 17:54:14 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/21/ac4971e09465212c546f6aaf1751eb/.command.err: Copied (new)
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2026/06/04 17:54:14 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/20/891e3b5bd8fda7adc7ba5fb388028f/.command.err: Copied (new)
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2026/06/04 17:54:15 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/88/86beb828dc78c0ef4e0f2ac19056a7/.command.sh: Copied (new)
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2026/06/04 17:54:15 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/74/c0d4fce8c76692b80ef5bf576c15da/.command.trace: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/9a/d3e1dff395c2c8c07511eed0190336/.command.trace: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/9a/d3e1dff395c2c8c07511eed0190336/.command.run: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/9a/d3e1dff395c2c8c07511eed0190336/.exitcode: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/24/773643a5f2c8a56e44eff12b2649d2/.command.err: Copied (new)
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2026/06/04 17:54:15 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/81/e7534a5140f32855ccfa4ea191c3e5/.command.begin: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/24/773643a5f2c8a56e44eff12b2649d2/.command.out: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/24/773643a5f2c8a56e44eff12b2649d2/.command.sh: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/24/773643a5f2c8a56e44eff12b2649d2/.command.run: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/81/e7534a5140f32855ccfa4ea191c3e5/.command.run: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/81/e7534a5140f32855ccfa4ea191c3e5/.exitcode: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/96/eb39ef4543fbddc2a8661f62ac7ce5/.command.begin: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/7f/0f2c41eb6f1bbbe5f6336f64d81157/LrCalculator/LrCalculator-20260603224956.log: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/24/773643a5f2c8a56e44eff12b2649d2/.command.log: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/81/e7534a5140f32855ccfa4ea191c3e5/.command.err: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/81/e7534a5140f32855ccfa4ea191c3e5/.command.log: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/96/eb39ef4543fbddc2a8661f62ac7ce5/.command.err: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/81/e7534a5140f32855ccfa4ea191c3e5/.command.sh: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/81/e7534a5140f32855ccfa4ea191c3e5/.command.trace: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/96/eb39ef4543fbddc2a8661f62ac7ce5/.command.trace: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/81/e7534a5140f32855ccfa4ea191c3e5/.command.out: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/96/eb39ef4543fbddc2a8661f62ac7ce5/.command.run: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/96/eb39ef4543fbddc2a8661f62ac7ce5/.exitcode: Copied (new)
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2026/06/04 17:54:15 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/81/7d4c141d381a0f4d468b7d80905df1/.command.log: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/6b/e87c03e80877a05b64f8594fad6ddc/Contamination/Spoiler-20260603225243.log: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/22/2143cb231de1efa1ebb9e2527bd794/.command.sh: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/91/1c9df84b7341735cc85c437613f5bb/.command.begin: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/7a/b25aa5708ab156717e0a41286d908a/LrCalculator/LrCalculator-20260603224248.log: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/22/2143cb231de1efa1ebb9e2527bd794/.command.log: Copied (new)
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2026/06/04 17:54:15 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/91/1c9df84b7341735cc85c437613f5bb/.command.log: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/91/1c9df84b7341735cc85c437613f5bb/.command.err: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/22/2143cb231de1efa1ebb9e2527bd794/.command.err: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/22/2143cb231de1efa1ebb9e2527bd794/.command.run: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/22/2143cb231de1efa1ebb9e2527bd794/.command.out: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/91/1c9df84b7341735cc85c437613f5bb/.exitcode: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/91/1c9df84b7341735cc85c437613f5bb/.command.trace: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/91/1c9df84b7341735cc85c437613f5bb/.command.run: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/91/1c9df84b7341735cc85c437613f5bb/.command.sh: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/7f/db913eea496b10cc893886317adf8e/.command.err: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/7f/db913eea496b10cc893886317adf8e/.command.begin: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/91/1c9df84b7341735cc85c437613f5bb/Nirvana-20260603224837.log: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/7f/db913eea496b10cc893886317adf8e/.exitcode: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/7f/db913eea496b10cc893886317adf8e/.command.out: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/7f/db913eea496b10cc893886317adf8e/.command.log: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/7f/db913eea496b10cc893886317adf8e/.command.run: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/7f/db913eea496b10cc893886317adf8e/.command.sh: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/80/77296ac20fd246b75cf888520d5d3f/Gis/dragen_syslog_1780525357093_285993.log: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/7f/db913eea496b10cc893886317adf8e/.command.trace: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/80/77296ac20fd246b75cf888520d5d3f/Gis/dragen_run_1780525357100_285993.log: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/9d/31ab56419fb87c885e5040b18b971a/.command.err: Copied (new)
2026/06/04 17:54:15 INFO  : Logs_Intermediates/nextflow_work_logs/3f/c1aeb523163d6b044dc26902061aa9/.command.err: Copied (new)
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2026/06/04 17:54:15 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/9d/31ab56419fb87c885e5040b18b971a/.command.out: Copied (new)
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2026/06/04 17:54:15 INFO  : Logs_Intermediates/nextflow_work_logs/3f/c1aeb523163d6b044dc26902061aa9/.command.out: Copied (new)
2026/06/04 17:54:15 INFO  : Logs_Intermediates/nextflow_work_logs/3f/c1aeb523163d6b044dc26902061aa9/.command.run: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/9d/31ab56419fb87c885e5040b18b971a/.command.begin: Copied (new)
2026/06/04 17:54:15 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/9d/31ab56419fb87c885e5040b18b971a/.exitcode: Copied (new)
2026/06/04 17:54:15 INFO  : Logs_Intermediates/nextflow_work_logs/40/38234cdb0825a424efa17a4c8d6ed9/.command.err: Copied (new)
2026/06/04 17:54:16 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/9d/31ab56419fb87c885e5040b18b971a/.command.sh: Copied (new)
2026/06/04 17:54:16 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/9d/31ab56419fb87c885e5040b18b971a/.command.trace: Copied (new)
2026/06/04 17:54:16 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/9d/31ab56419fb87c885e5040b18b971a/.command.run: Copied (new)
2026/06/04 17:54:16 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/24/f7c97d41537edf1bbcc6791bb849e6/.command.err: Copied (new)
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2026/06/04 17:54:16 INFO  : Logs_Intermediates/nextflow_work_logs/40/38234cdb0825a424efa17a4c8d6ed9/.command.run: Copied (new)
2026/06/04 17:54:16 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/24/f7c97d41537edf1bbcc6791bb849e6/.command.run: Copied (new)
2026/06/04 17:54:16 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/8e/f1dffb5bd0ab41e3ec5fdfbcdb0ab2/.command.err: Copied (new)
2026/06/04 17:54:16 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/24/f7c97d41537edf1bbcc6791bb849e6/.command.log: Copied (new)
2026/06/04 17:54:16 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/8e/f1dffb5bd0ab41e3ec5fdfbcdb0ab2/.command.begin: Copied (new)
2026/06/04 17:54:16 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/24/f7c97d41537edf1bbcc6791bb849e6/.command.sh: Copied (new)
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2026/06/04 17:54:16 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/24/f7c97d41537edf1bbcc6791bb849e6/.command.out: Copied (new)
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2026/06/04 17:54:16 INFO  : Logs_Intermediates/nextflow_work_logs/40/38234cdb0825a424efa17a4c8d6ed9/.command.out: Copied (new)
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2026/06/04 17:54:16 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/6b/ffe5299eea7463f7d027b502b4daf0/DnaDragenCaller/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:54:16 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/6b/ffe5299eea7463f7d027b502b4daf0/DnaDragenCaller/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
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2026/06/04 17:54:16 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/25/4009214082eb7207b5a2dabcf32c98/.command.err: Copied (new)
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2026/06/04 17:54:16 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/25/4009214082eb7207b5a2dabcf32c98/.command.out: Copied (new)
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2026/06/04 17:54:16 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/8e/f1dffb5bd0ab41e3ec5fdfbcdb0ab2/.command.log: Copied (new)
2026/06/04 17:54:16 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/25/4009214082eb7207b5a2dabcf32c98/.command.log: Copied (new)
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2026/06/04 17:54:16 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/25/4009214082eb7207b5a2dabcf32c98/.command.run: Copied (new)
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2026/06/04 17:54:16 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/25/4009214082eb7207b5a2dabcf32c98/.command.sh: Copied (new)
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2026/06/04 17:54:16 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/22/412c25fcd9453014d0d40d448dbd1e/.command.log: Copied (new)
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2026/06/04 17:54:16 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/22/412c25fcd9453014d0d40d448dbd1e/.command.out: Copied (new)
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2026/06/04 17:54:16 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/22/412c25fcd9453014d0d40d448dbd1e/.command.err: Copied (new)
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2026/06/04 17:54:16 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/22/412c25fcd9453014d0d40d448dbd1e/.command.sh: Copied (new)
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2026/06/04 17:54:16 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/22/412c25fcd9453014d0d40d448dbd1e/.command.run: Copied (new)
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2026/06/04 17:54:16 INFO  : Logs_Intermediates/FastqGeneration/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna_S21_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:54:16 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/7e/48837f832432b109ae16e5a449bb9e/.command.out: Copied (new)
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2026/06/04 17:54:16 INFO  : Logs_Intermediates/nextflow_work_logs/41/846aa907228e90ce6b4cb13ac5194e/.command.out: Copied (new)
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2026/06/04 17:54:16 INFO  : Logs_Intermediates/nextflow_work_logs/3e/fd434b9952e26a588fd85c227fb151/.command.log: Copied (new)
2026/06/04 17:54:16 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/75/8e7e2edc5662ec08560dcb33755e00/Gis/dragen_run_1780525895124_307931.log: Copied (new)
2026/06/04 17:54:16 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/75/8e7e2edc5662ec08560dcb33755e00/Gis/dragen_syslog_1780525894582_307931.log: Copied (new)
2026/06/04 17:54:16 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/b5/21b01780a99cc86f5131b1bf3b29d0/.exitcode: Copied (new)
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2026/06/04 17:54:16 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/81/a388b0fa3446c84d5d3472ce7b1278/.command.begin: Copied (new)
2026/06/04 17:54:16 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/81/a388b0fa3446c84d5d3472ce7b1278/.command.err: Copied (new)
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2026/06/04 17:54:16 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/81/a388b0fa3446c84d5d3472ce7b1278/.exitcode: Copied (new)
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2026/06/04 17:54:16 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/82/359454276f8b0803f7c18b612dba62/.command.begin: Copied (new)
2026/06/04 17:54:16 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/82/359454276f8b0803f7c18b612dba62/.exitcode: Copied (new)
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2026/06/04 17:54:16 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/97/3edb9ab7f43c4d5f888f9a4fc1fdc1/.command.begin: Copied (new)
2026/06/04 17:54:16 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/82/359454276f8b0803f7c18b612dba62/.command.err: Copied (new)
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2026/06/04 17:54:16 INFO  : Logs_Intermediates/nextflow_work_logs/40/455628fe8c33e94bdac9eb4972b9c6/.command.err: Copied (new)
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2026/06/04 17:54:17 INFO  : Logs_Intermediates/nextflow_work_logs/40/455628fe8c33e94bdac9eb4972b9c6/.command.out: Copied (new)
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2026/06/04 17:54:17 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/86/a048c6ea7753af984863d5adb19be0/.command.err: Copied (new)
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2026/06/04 17:54:17 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/86/a048c6ea7753af984863d5adb19be0/.command.out: Copied (new)
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2026/06/04 17:54:17 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/96/aacf271e97486e889508bc327f7d53/.command.err: Copied (new)
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2026/06/04 17:54:17 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/96/aacf271e97486e889508bc327f7d53/.command.out: Copied (new)
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2026/06/04 17:54:17 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/96/aacf271e97486e889508bc327f7d53/.exitcode: Copied (new)
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2026/06/04 17:54:17 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/26/17b84b28687faadf2600d7e207cbe6/.command.err: Copied (new)
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2026/06/04 17:54:17 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/27/c1e7227d8cdae10b7be95a8bc094e9/.command.err: Copied (new)
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2026/06/04 17:54:17 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/82/b11ef5a1423ca5dbcde32a49277283/.command.trace: Copied (new)
2026/06/04 17:54:17 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/82/b11ef5a1423ca5dbcde32a49277283/.exitcode: Copied (new)
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2026/06/04 17:54:17 INFO  : Logs_Intermediates/FastqGeneration/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna_S21_L001_R1_001.fastq.gz: Multi-thread Copied (new)
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2026/06/04 17:54:18 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/26/418f5218313e3bcea0e2c8b5b20dc4/.command.err: Copied (new)
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2026/06/04 17:54:18 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/22/86b34ed3cd10986760e3af75d16c36/.command.out: Copied (new)
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2026/06/04 17:54:18 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/22/86b34ed3cd10986760e3af75d16c36/.command.sh: Copied (new)
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2026/06/04 17:54:18 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/22/86b34ed3cd10986760e3af75d16c36/.command.run: Copied (new)
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2026/06/04 17:54:18 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/84/409c6fe4d66a9ef01e8af6ef4a2415/.exitcode: Copied (new)
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2026/06/04 17:54:18 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/c4/c0f051e8e21f24a28b4b7e8818a114/.command.out: Copied (new)
2026/06/04 17:54:18 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/c4/c0f051e8e21f24a28b4b7e8818a114/.command.begin: Copied (new)
2026/06/04 17:54:18 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/c4/c0f051e8e21f24a28b4b7e8818a114/.command.err: Copied (new)
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2026/06/04 17:54:18 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/c4/c0f051e8e21f24a28b4b7e8818a114/.exitcode: Copied (new)
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2026/06/04 17:54:18 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/c4/c0f051e8e21f24a28b4b7e8818a114/.command.run: Copied (new)
2026/06/04 17:54:18 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/c4/c0f051e8e21f24a28b4b7e8818a114/.command.log: Copied (new)
2026/06/04 17:54:18 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/c4/c0f051e8e21f24a28b4b7e8818a114/.command.trace: Copied (new)
2026/06/04 17:54:18 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/90/3af8340ea4238b2f71f70bb94f90e9/Gis/dragen_run_1780523819479_236512.log: Copied (new)
2026/06/04 17:54:18 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/c4/c0f051e8e21f24a28b4b7e8818a114/.command.sh: Copied (new)
2026/06/04 17:54:18 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/27/c3031386b70c47a79bd6e406aa2a84/.command.out: Copied (new)
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2026/06/04 17:54:18 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/27/c3031386b70c47a79bd6e406aa2a84/.command.err: Copied (new)
2026/06/04 17:54:18 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/27/c3031386b70c47a79bd6e406aa2a84/.command.log: Copied (new)
2026/06/04 17:54:18 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/bf/637ad94f0183c21eec096bd9474813/.exitcode: Copied (new)
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2026/06/04 17:54:18 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/28/ca847d1527bdb82529f99f4fb97d41/.command.err: Copied (new)
2026/06/04 17:54:18 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/28/ca847d1527bdb82529f99f4fb97d41/.command.env: Copied (new)
2026/06/04 17:54:18 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/bf/637ad94f0183c21eec096bd9474813/.command.sh: Copied (new)
2026/06/04 17:54:18 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/27/c3031386b70c47a79bd6e406aa2a84/.command.run: Copied (new)
2026/06/04 17:54:18 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/27/c3031386b70c47a79bd6e406aa2a84/.command.sh: Copied (new)
2026/06/04 17:54:18 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/28/ca847d1527bdb82529f99f4fb97d41/.command.out: Copied (new)
2026/06/04 17:54:18 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/28/ca847d1527bdb82529f99f4fb97d41/.command.run: Copied (new)
2026/06/04 17:54:18 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/28/ca847d1527bdb82529f99f4fb97d41/.command.sh: Copied (new)
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2026/06/04 17:54:18 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/89/1c8f59b4f9a1ac4204d3488e06fa4a/.command.err: Copied (new)
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2026/06/04 17:54:18 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/28/ca847d1527bdb82529f99f4fb97d41/.command.log: Copied (new)
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2026/06/04 17:54:18 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/81/e7534a5140f32855ccfa4ea191c3e5/DnaDragenExonCnvCaller/dragen_syslog_1780525116068_277228.log: Copied (new)
2026/06/04 17:54:18 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/89/1c8f59b4f9a1ac4204d3488e06fa4a/.command.run: Copied (new)
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2026/06/04 17:54:18 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/89/1c8f59b4f9a1ac4204d3488e06fa4a/.command.sh: Copied (new)
2026/06/04 17:54:18 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/7b/ad612ee35657b3f00a6b566868b4fd/SampleAnalysisResults/659_ciq-T1-TDNA-1_HLNLMDRX7_1_SARJeantLog-20260603230926.log: Copied (new)
2026/06/04 17:54:18 INFO  : Logs_Intermediates/nextflow_work_logs/40/79e72246cc185efaeeb597dbfffc0f/.command.sh: Copied (new)
2026/06/04 17:54:18 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/89/1c8f59b4f9a1ac4204d3488e06fa4a/.exitcode: Copied (new)
2026/06/04 17:54:18 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/96/060310468cf9f62d9fac45bf6844e1/.command.out: Copied (new)
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2026/06/04 17:54:18 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/89/1c8f59b4f9a1ac4204d3488e06fa4a/.command.trace: Copied (new)
2026/06/04 17:54:18 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/9b/d8d2ed38406b3fc07e0cc316e6fe9e/.command.begin: Copied (new)
2026/06/04 17:54:18 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/9b/d8d2ed38406b3fc07e0cc316e6fe9e/.command.out: Copied (new)
2026/06/04 17:54:18 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/9b/d8d2ed38406b3fc07e0cc316e6fe9e/.command.log: Copied (new)
2026/06/04 17:54:18 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/9b/d8d2ed38406b3fc07e0cc316e6fe9e/.command.sh: Copied (new)
2026/06/04 17:54:18 INFO  : Logs_Intermediates/nextflow_work_logs/43/3439a4322464a6a2967e407fa67920/.command.err: Copied (new)
2026/06/04 17:54:18 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/9b/d8d2ed38406b3fc07e0cc316e6fe9e/.exitcode: Copied (new)
2026/06/04 17:54:18 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/9b/d8d2ed38406b3fc07e0cc316e6fe9e/.command.trace: Copied (new)
2026/06/04 17:54:18 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/9b/d8d2ed38406b3fc07e0cc316e6fe9e/Nirvana-20260603205858.log: Copied (new)
2026/06/04 17:54:19 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/8c/d7a227e112a4b7b53c8d3d1efb1e7f/.command.err: Copied (new)
2026/06/04 17:54:19 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/8c/d7a227e112a4b7b53c8d3d1efb1e7f/.command.begin: Copied (new)
2026/06/04 17:54:19 INFO  : Logs_Intermediates/nextflow_work_logs/43/3439a4322464a6a2967e407fa67920/.command.sh: Copied (new)
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2026/06/04 17:54:19 INFO  : Logs_Intermediates/nextflow_work_logs/43/3439a4322464a6a2967e407fa67920/.command.log: Copied (new)
2026/06/04 17:54:19 INFO  : Logs_Intermediates/nextflow_work_logs/43/3439a4322464a6a2967e407fa67920/.command.run: Copied (new)
2026/06/04 17:54:19 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/9b/d8d2ed38406b3fc07e0cc316e6fe9e/.command.run: Copied (new)
2026/06/04 17:54:19 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/8c/d7a227e112a4b7b53c8d3d1efb1e7f/.command.run: Copied (new)
2026/06/04 17:54:19 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/89/1c8f59b4f9a1ac4204d3488e06fa4a/Nirvana-20260603223745.log: Copied (new)
2026/06/04 17:54:19 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/8c/d7a227e112a4b7b53c8d3d1efb1e7f/.exitcode: Copied (new)
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2026/06/04 17:54:19 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/8c/d7a227e112a4b7b53c8d3d1efb1e7f/.command.out: Copied (new)
2026/06/04 17:54:19 INFO  : Logs_Intermediates/nextflow_work_logs/43/3439a4322464a6a2967e407fa67920/.command.out: Copied (new)
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2026/06/04 17:54:19 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/a0/3633c342e752f75dbb2309211126cc/.command.begin: Copied (new)
2026/06/04 17:54:19 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/a0/3633c342e752f75dbb2309211126cc/.command.env: Copied (new)
2026/06/04 17:54:19 INFO  : Logs_Intermediates/nextflow_work_logs/44/024b01216da72fecd93475871b551a/.command.log: Copied (new)
2026/06/04 17:54:19 INFO  : Logs_Intermediates/nextflow_work_logs/44/024b01216da72fecd93475871b551a/.command.run: Copied (new)
2026/06/04 17:54:19 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/a0/3633c342e752f75dbb2309211126cc/.command.log: Copied (new)
2026/06/04 17:54:19 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/a0/3633c342e752f75dbb2309211126cc/.command.out: Copied (new)
2026/06/04 17:54:19 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/8a/68371aaea0b2e4a17bc1d15c7c26f0/.command.log: Copied (new)
2026/06/04 17:54:19 INFO  : Logs_Intermediates/nextflow_work_logs/44/024b01216da72fecd93475871b551a/.command.err: Copied (new)
2026/06/04 17:54:19 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/c5/0fdbd903d826c7d369248873bb46ab/.command.begin: Copied (new)
2026/06/04 17:54:19 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/c5/0fdbd903d826c7d369248873bb46ab/.command.env: Copied (new)
2026/06/04 17:54:19 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/a0/3633c342e752f75dbb2309211126cc/.exitcode: Copied (new)
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2026/06/04 17:54:19 INFO  : Logs_Intermediates/nextflow_work_logs/44/024b01216da72fecd93475871b551a/.command.out: Copied (new)
2026/06/04 17:54:19 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/a0/3633c342e752f75dbb2309211126cc/.command.trace: Copied (new)
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2026/06/04 17:54:19 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/c5/0fdbd903d826c7d369248873bb46ab/.command.log: Copied (new)
2026/06/04 17:54:19 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/a0/3633c342e752f75dbb2309211126cc/.command.run: Copied (new)
2026/06/04 17:54:19 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/c5/0fdbd903d826c7d369248873bb46ab/.command.out: Copied (new)
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2026/06/04 17:54:20 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/a3/bddbd57ca552be53ee6a55fa807373/.exitcode: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/82/359454276f8b0803f7c18b612dba62/DnaDragenCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/a3/bddbd57ca552be53ee6a55fa807373/.command.run: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/22/eeb9146b3c49b6c6706c072ffdc8c3/.command.err: Copied (new)
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2026/06/04 17:54:20 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/22/eeb9146b3c49b6c6706c072ffdc8c3/.command.out: Copied (new)
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2026/06/04 17:54:20 INFO  : Logs_Intermediates/nextflow_work_logs/3e/f4f7ad0d18050f26a5150863172081/.command.log: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/22/eeb9146b3c49b6c6706c072ffdc8c3/.command.sh: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/cd/94ac94eaca899fed3fb099e5106d65/.command.err: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/82/359454276f8b0803f7c18b612dba62/DnaDragenCaller/dragen_run_1780521460966_143474.log: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/82/359454276f8b0803f7c18b612dba62/DnaDragenCaller/dragen_syslog_1780521460950_143474.log: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/22/eeb9146b3c49b6c6706c072ffdc8c3/.command.log: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/cd/94ac94eaca899fed3fb099e5106d65/.command.begin: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/22/eeb9146b3c49b6c6706c072ffdc8c3/.command.run: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/a3/bddbd57ca552be53ee6a55fa807373/.command.sh: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/cd/94ac94eaca899fed3fb099e5106d65/.exitcode: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/29/bad9e7bcb77837c1a45c6eebfa1335/.command.err: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/cd/94ac94eaca899fed3fb099e5106d65/.command.sh: Copied (new)
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2026/06/04 17:54:20 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/29/bad9e7bcb77837c1a45c6eebfa1335/.command.out: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/29/bad9e7bcb77837c1a45c6eebfa1335/.command.log: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/29/bad9e7bcb77837c1a45c6eebfa1335/.command.sh: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2b/13e1f4a3d498c6e7572a9270bd8a86/.command.err: Copied (new)
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2026/06/04 17:54:20 INFO  : Logs_Intermediates/nextflow_work_logs/40/b2a42bbbbef476a37d4758b86f7bfe/.command.err: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/29/bad9e7bcb77837c1a45c6eebfa1335/.command.run: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/8e/14ed6993c7edcda747a25f9141e6a7/.command.begin: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2b/13e1f4a3d498c6e7572a9270bd8a86/.command.log: Copied (new)
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2026/06/04 17:54:20 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/8e/14ed6993c7edcda747a25f9141e6a7/.command.sh: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/8e/14ed6993c7edcda747a25f9141e6a7/.command.trace: Copied (new)
2026/06/04 17:54:20 INFO  : Logs_Intermediates/nextflow_work_logs/46/32cd257917a7bbd8f3b418edee7ebb/.command.err: Copied (new)
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2026/06/04 17:54:20 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2b/13e1f4a3d498c6e7572a9270bd8a86/.command.run: Copied (new)
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2026/06/04 17:54:20 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2b/13e1f4a3d498c6e7572a9270bd8a86/.command.sh: Copied (new)
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2026/06/04 17:54:20 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/a8/e105440782fa45c3ad031cb13774c8/.command.begin: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/a8/e105440782fa45c3ad031cb13774c8/.command.err: Copied (new)
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2026/06/04 17:54:20 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/a8/e105440782fa45c3ad031cb13774c8/.command.out: Copied (new)
2026/06/04 17:54:20 INFO  : Logs_Intermediates/nextflow_work_logs/45/97a08743d1dfe950d59f6eec44cf99/.command.run: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/a8/e105440782fa45c3ad031cb13774c8/.command.log: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/a8/e105440782fa45c3ad031cb13774c8/.command.sh: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a4/962d8e517e9bb7d1669db616e1d464/.command.out: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/a8/e105440782fa45c3ad031cb13774c8/.exitcode: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/a8/e105440782fa45c3ad031cb13774c8/.command.run: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a4/962d8e517e9bb7d1669db616e1d464/.command.begin: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a4/962d8e517e9bb7d1669db616e1d464/.command.err: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a4/962d8e517e9bb7d1669db616e1d464/.command.sh: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a4/962d8e517e9bb7d1669db616e1d464/.command.run: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/a8/e105440782fa45c3ad031cb13774c8/.command.trace: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a4/962d8e517e9bb7d1669db616e1d464/.command.log: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/8f/016edac5ac7efbc005e4d28d03ff87/.command.begin: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a4/962d8e517e9bb7d1669db616e1d464/.exitcode: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/8f/016edac5ac7efbc005e4d28d03ff87/.command.err: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a4/962d8e517e9bb7d1669db616e1d464/Nirvana-20260603225000.log: Copied (new)
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2026/06/04 17:54:20 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/8f/016edac5ac7efbc005e4d28d03ff87/.command.out: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/8f/016edac5ac7efbc005e4d28d03ff87/.command.run: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/8f/016edac5ac7efbc005e4d28d03ff87/.command.sh: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/8f/016edac5ac7efbc005e4d28d03ff87/.exitcode: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/8f/016edac5ac7efbc005e4d28d03ff87/.command.trace: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d0/ff17c4f0512b2bb75e8303193132d7/.command.begin: Copied (new)
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2026/06/04 17:54:20 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d0/ff17c4f0512b2bb75e8303193132d7/.command.err: Copied (new)
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2026/06/04 17:54:20 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2c/5cf7ac32ad2f27effdbc01ede90c75/.command.err: Copied (new)
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2026/06/04 17:54:20 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/8f/1025bbb9cf6a0ef4e7b715cfa0bf87/.command.begin: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d0/ff17c4f0512b2bb75e8303193132d7/.command.trace: Copied (new)
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2026/06/04 17:54:20 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/8f/1025bbb9cf6a0ef4e7b715cfa0bf87/.command.err: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2c/5cf7ac32ad2f27effdbc01ede90c75/.command.run: Copied (new)
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2026/06/04 17:54:20 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2c/5cf7ac32ad2f27effdbc01ede90c75/.command.out: Copied (new)
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2026/06/04 17:54:20 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/8f/1025bbb9cf6a0ef4e7b715cfa0bf87/.command.sh: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2c/5cf7ac32ad2f27effdbc01ede90c75/.command.sh: Copied (new)
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2026/06/04 17:54:20 INFO  : Logs_Intermediates/nextflow_work_logs/47/23a804706437fd6392901bbae74051/.command.out: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2c/5cf7ac32ad2f27effdbc01ede90c75/.command.log: Copied (new)
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2026/06/04 17:54:20 INFO  : Logs_Intermediates/nextflow_work_logs/40/c668116b9e82117ce72e8c4a83696f/.command.out: Copied (new)
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2026/06/04 17:54:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a4/f9ce1244c002be54812121aec82957/.command.sh: Copied (new)
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2026/06/04 17:54:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a6/92faecd98be80aad1c9a24e4790f30/.command.err: Copied (new)
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2026/06/04 17:54:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a4/f9ce1244c002be54812121aec82957/Nirvana-20260603203904.log: Copied (new)
2026/06/04 17:54:20 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a6/92faecd98be80aad1c9a24e4790f30/.exitcode: Copied (new)
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2026/06/04 17:54:20 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/94/15a21dbc8136c9b44f050c0f6773a6/.command.err: Copied (new)
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2026/06/04 17:54:20 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/94/15a21dbc8136c9b44f050c0f6773a6/.command.out: Copied (new)
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2026/06/04 17:54:21 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/94/15a21dbc8136c9b44f050c0f6773a6/.exitcode: Copied (new)
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2026/06/04 17:54:21 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/94/15a21dbc8136c9b44f050c0f6773a6/.command.run: Copied (new)
2026/06/04 17:54:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna/659_cZs-T1-TDNA-1_HLNLMDRX7_1_dna.bam: Multi-thread Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d3/7c9845748a9c7a542996b80810d10c/.command.begin: Copied (new)
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2026/06/04 17:54:21 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/94/15a21dbc8136c9b44f050c0f6773a6/.command.log: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/94/15a21dbc8136c9b44f050c0f6773a6/.command.trace: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/94/15a21dbc8136c9b44f050c0f6773a6/gen_coverage_reports.log: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d3/7c9845748a9c7a542996b80810d10c/.command.out: Copied (new)
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2026/06/04 17:54:21 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d3/7c9845748a9c7a542996b80810d10c/.command.log: Copied (new)
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2026/06/04 17:54:21 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ab/97b35373f7d8b5c4437547df44e4e6/.exitcode: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ab/97b35373f7d8b5c4437547df44e4e6/.command.log: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/84/409c6fe4d66a9ef01e8af6ef4a2415/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/84/409c6fe4d66a9ef01e8af6ef4a2415/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ab/97b35373f7d8b5c4437547df44e4e6/.command.trace: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/84/409c6fe4d66a9ef01e8af6ef4a2415/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ab/97b35373f7d8b5c4437547df44e4e6/.command.run: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ab/97b35373f7d8b5c4437547df44e4e6/.command.sh: Copied (new)
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2026/06/04 17:54:21 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/b5/b8cbe4984f3e87cfaf138f7645213b/.command.log: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a8/724d8fc3a509919c4e480931772c8c/.command.begin: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2e/0bba4ffffbe067692beef74e8c1ca9/.command.err: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2e/0bba4ffffbe067692beef74e8c1ca9/.command.sh: Copied (new)
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2026/06/04 17:54:21 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2e/0bba4ffffbe067692beef74e8c1ca9/.command.out: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2e/0bba4ffffbe067692beef74e8c1ca9/.command.log: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a8/724d8fc3a509919c4e480931772c8c/.exitcode: Copied (new)
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2026/06/04 17:54:21 INFO  : Logs_Intermediates/nextflow_work_logs/47/cbf3026eed73f845bc5ae659fb1ee7/.command.err: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a8/724d8fc3a509919c4e480931772c8c/.command.run: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a8/724d8fc3a509919c4e480931772c8c/.command.log: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/84/409c6fe4d66a9ef01e8af6ef4a2415/DnaDragenCaller/dragen_run_1780521227906_139825.log: Copied (new)
2026/06/04 17:54:21 INFO  : Logs_Intermediates/nextflow_work_logs/47/cbf3026eed73f845bc5ae659fb1ee7/.command.out: Copied (new)
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2026/06/04 17:54:21 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a8/724d8fc3a509919c4e480931772c8c/.command.sh: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/99/b8c277d0bc61220ce990868192bcc1/.command.begin: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2e/0bba4ffffbe067692beef74e8c1ca9/.command.run: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/a1/e9c5044d71459c3f5fac5bf551e705/Gis/dragen_run_1780526116359_311532.log: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a8/724d8fc3a509919c4e480931772c8c/.command.out: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/99/b8c277d0bc61220ce990868192bcc1/.command.err: Copied (new)
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2026/06/04 17:54:21 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/99/b8c277d0bc61220ce990868192bcc1/.command.run: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/99/b8c277d0bc61220ce990868192bcc1/.exitcode: Copied (new)
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2026/06/04 17:54:21 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/a1/e9c5044d71459c3f5fac5bf551e705/Gis/dragen_syslog_1780526116352_311532.log: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/af/162fde26e4468fad33ff6ab5dce5fa/.command.log: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/99/b8c277d0bc61220ce990868192bcc1/.command.sh: Copied (new)
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2026/06/04 17:54:21 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/af/162fde26e4468fad33ff6ab5dce5fa/.command.err: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/af/162fde26e4468fad33ff6ab5dce5fa/.exitcode: Copied (new)
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2026/06/04 17:54:21 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/95/102c4bf07ba69daeede9d580cf2672/.command.begin: Copied (new)
2026/06/04 17:54:21 INFO  : Logs_Intermediates/nextflow_work_logs/48/32ed80e358d5c73648e85f55d193fb/.command.out: Copied (new)
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2026/06/04 17:54:21 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/af/162fde26e4468fad33ff6ab5dce5fa/.command.trace: Copied (new)
2026/06/04 17:54:21 INFO  : Logs_Intermediates/nextflow_work_logs/48/32ed80e358d5c73648e85f55d193fb/.command.log: Copied (new)
2026/06/04 17:54:21 INFO  : Logs_Intermediates/nextflow_work_logs/48/32ed80e358d5c73648e85f55d193fb/.command.run: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/95/102c4bf07ba69daeede9d580cf2672/.exitcode: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/95/102c4bf07ba69daeede9d580cf2672/.command.err: Copied (new)
2026/06/04 17:54:21 INFO  : Logs_Intermediates/nextflow_work_logs/48/32ed80e358d5c73648e85f55d193fb/.command.err: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d4/e11ad26883fba9a77e54e8dad7d546/.command.log: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d4/e11ad26883fba9a77e54e8dad7d546/.command.out: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/95/102c4bf07ba69daeede9d580cf2672/.command.sh: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/95/102c4bf07ba69daeede9d580cf2672/.command.trace: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d4/e11ad26883fba9a77e54e8dad7d546/.command.run: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d4/e11ad26883fba9a77e54e8dad7d546/.command.err: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d4/e11ad26883fba9a77e54e8dad7d546/.exitcode: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/95/102c4bf07ba69daeede9d580cf2672/.command.out: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d4/e11ad26883fba9a77e54e8dad7d546/.command.begin: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d4/e11ad26883fba9a77e54e8dad7d546/.command.sh: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/95/102c4bf07ba69daeede9d580cf2672/.command.run: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/95/102c4bf07ba69daeede9d580cf2672/.command.log: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ab/de7143ca4ed4560061f74ab176f31b/.command.begin: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d4/e11ad26883fba9a77e54e8dad7d546/.command.trace: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ab/de7143ca4ed4560061f74ab176f31b/.command.log: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ab/de7143ca4ed4560061f74ab176f31b/.command.err: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ab/de7143ca4ed4560061f74ab176f31b/.exitcode: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/8a/172ea4f4cdc09d2d2582ff486266aa/Tmb/dragen_run_1780526169728_316688.log: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ab/de7143ca4ed4560061f74ab176f31b/.command.out: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2e/327f8d4155e8e08ffd65d1c7c34102/.command.err: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ab/de7143ca4ed4560061f74ab176f31b/.command.run: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/8a/172ea4f4cdc09d2d2582ff486266aa/Tmb/dragen_syslog_1780526169720_316688.log: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2e/327f8d4155e8e08ffd65d1c7c34102/.command.log: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/bf/51af32f12da4e6c138a2801b3f1d91/.command.out: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a9/ba2b00d738200f1c224c58259c144e/.command.begin: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ab/de7143ca4ed4560061f74ab176f31b/.command.trace: Copied (new)
2026/06/04 17:54:21 INFO  : Logs_Intermediates/FastqGeneration/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna_S29_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a9/ba2b00d738200f1c224c58259c144e/.exitcode: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2e/327f8d4155e8e08ffd65d1c7c34102/.command.out: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2e/327f8d4155e8e08ffd65d1c7c34102/.command.sh: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a9/ba2b00d738200f1c224c58259c144e/.command.log: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ab/de7143ca4ed4560061f74ab176f31b/.command.sh: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a9/ba2b00d738200f1c224c58259c144e/.command.trace: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a9/ba2b00d738200f1c224c58259c144e/.command.err: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2f/65c711cd07b847fd86468c1dfec9b7/.command.err: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a9/ba2b00d738200f1c224c58259c144e/.command.run: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2f/65c711cd07b847fd86468c1dfec9b7/.command.out: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a9/ba2b00d738200f1c224c58259c144e/.command.sh: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a9/ba2b00d738200f1c224c58259c144e/.command.out: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2f/65c711cd07b847fd86468c1dfec9b7/.command.sh: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2f/65c711cd07b847fd86468c1dfec9b7/.command.run: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2f/65c711cd07b847fd86468c1dfec9b7/.command.log: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/af/9fbf8b40840cf036ea74e2e380f359/.command.err: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/af/9fbf8b40840cf036ea74e2e380f359/.command.begin: Copied (new)
2026/06/04 17:54:21 INFO  : Logs_Intermediates/nextflow_work_logs/48/77f47d3848ee683f4f1430d85fe18a/.command.run: Copied (new)
2026/06/04 17:54:21 INFO  : Logs_Intermediates/nextflow_work_logs/48/77f47d3848ee683f4f1430d85fe18a/.command.log: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/af/9fbf8b40840cf036ea74e2e380f359/.command.trace: Copied (new)
2026/06/04 17:54:21 INFO  : Logs_Intermediates/nextflow_work_logs/48/77f47d3848ee683f4f1430d85fe18a/.command.err: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/af/9fbf8b40840cf036ea74e2e380f359/.exitcode: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/af/9fbf8b40840cf036ea74e2e380f359/.command.out: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/af/9fbf8b40840cf036ea74e2e380f359/.command.log: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/af/9fbf8b40840cf036ea74e2e380f359/.command.sh: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/af/9fbf8b40840cf036ea74e2e380f359/.command.run: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2e/327f8d4155e8e08ffd65d1c7c34102/.command.run: Copied (new)
2026/06/04 17:54:21 INFO  : Logs_Intermediates/nextflow_work_logs/48/77f47d3848ee683f4f1430d85fe18a/.command.out: Copied (new)
2026/06/04 17:54:21 INFO  : Logs_Intermediates/nextflow_work_logs/48/77f47d3848ee683f4f1430d85fe18a/.command.sh: Copied (new)
2026/06/04 17:54:21 INFO  : Logs_Intermediates/nextflow_work_logs/49/5384911bb99e9a606c693426b8df4b/.command.err: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/a3/bddbd57ca552be53ee6a55fa807373/SampleSheetReader/ReaderService-20260603201134.log: Copied (new)
2026/06/04 17:54:21 INFO  : Logs_Intermediates/nextflow_work_logs/49/5384911bb99e9a606c693426b8df4b/.command.log: Copied (new)
2026/06/04 17:54:21 INFO  : Logs_Intermediates/nextflow_work_logs/49/5384911bb99e9a606c693426b8df4b/.command.run: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/9f/f955a663f0edd0f326cd56ecc1e18e/.command.err: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/9f/f955a663f0edd0f326cd56ecc1e18e/.command.begin: Copied (new)
2026/06/04 17:54:21 INFO  : Logs_Intermediates/nextflow_work_logs/49/5384911bb99e9a606c693426b8df4b/.command.sh: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/9f/f955a663f0edd0f326cd56ecc1e18e/.command.out: Copied (new)
2026/06/04 17:54:21 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/9f/f955a663f0edd0f326cd56ecc1e18e/.exitcode: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/9f/f955a663f0edd0f326cd56ecc1e18e/.command.trace: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/9f/f955a663f0edd0f326cd56ecc1e18e/.command.run: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/95/9f79165c1bb11a54285682f8cf113d/.command.begin: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/95/9f79165c1bb11a54285682f8cf113d/.command.err: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/9f/f955a663f0edd0f326cd56ecc1e18e/659_bt5-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/9f/f955a663f0edd0f326cd56ecc1e18e/.command.log: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/95/9f79165c1bb11a54285682f8cf113d/.command.log: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/95/9f79165c1bb11a54285682f8cf113d/.exitcode: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/95/9f79165c1bb11a54285682f8cf113d/.command.out: Copied (new)
2026/06/04 17:54:22 INFO  : Logs_Intermediates/nextflow_work_logs/49/5384911bb99e9a606c693426b8df4b/.command.out: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d7/2c6015a46970fa26ad54ea581a2efd/.command.begin: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d7/2c6015a46970fa26ad54ea581a2efd/.command.err: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/9f/f955a663f0edd0f326cd56ecc1e18e/.command.sh: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/95/9f79165c1bb11a54285682f8cf113d/.command.run: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d7/2c6015a46970fa26ad54ea581a2efd/.command.log: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d7/2c6015a46970fa26ad54ea581a2efd/.command.out: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/95/9f79165c1bb11a54285682f8cf113d/.command.trace: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/95/9f79165c1bb11a54285682f8cf113d/Nirvana-20260603223441.log: Copied (new)
2026/06/04 17:54:22 INFO  : 
Transferred:   	  359.354 GiB / 409.849 GiB, 88%, 1.293 GiB/s, ETA 39s
Transferred:        10253 / 14718, 70%
Elapsed time:      4m30.0s
Transferring:
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 99% /4.924Gi, 33.105Mi/s, 0s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 87% /5.095Gi, 29.982Mi/s, 21s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 70% /4.893Gi, 30.129Mi/s, 49s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 75% /4.616Gi, 33.089Mi/s, 35s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 70% /5.032Gi, 30.440Mi/s, 50s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 69% /5.053Gi, 41.366Mi/s, 38s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 60% /5.199Gi, 30.888Mi/s, 1m8s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 68% /4.565Gi, 37.826Mi/s, 38s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 46% /5.390Gi, 28.500Mi/s, 1m42s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 59% /4.435Gi, 30.428Mi/s, 1m0s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 43% /4.442Gi, 30.353Mi/s, 1m24s
 * Logs_Intermediates/Fas…1_L001_R2_001.fastq.gz: 98% /1.785Gi, 29.906Mi/s, 1s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 35% /5.006Gi, 30.378Mi/s, 1m48s
 * Logs_Intermediates/Fas…9_L002_R2_001.fastq.gz: 90% /1.727Gi, 32.422Mi/s, 5s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 31% /5.054Gi, 34.734Mi/s, 1m41s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 24% /5.102Gi, 24.462Mi/s, 2m40s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 28% /4.676Gi, 33.593Mi/s, 1m41s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 25% /4.475Gi, 27.290Mi/s, 2m5s
 * Logs_Intermediates/Fas…6_L001_R1_001.fastq.gz: 62% /1.864Gi, 32.317Mi/s, 22s
 * Logs_Intermediates/Fas…6_L001_R2_001.fastq.gz: 63% /1.933Gi, 26.425Mi/s, 27s
 * Logs_Intermediates/Fas…6_L002_R1_001.fastq.gz: 72% /1.892Gi, 34.619Mi/s, 15s
 * Logs_Intermediates/Fas…6_L002_R2_001.fastq.gz: 63% /1.966Gi, 26.927Mi/s, 27s
 * Logs_Intermediates/Fas…0_L001_R1_001.fastq.gz: 32% /3.196Gi, 29.700Mi/s, 1m14s
 * Logs_Intermediates/Fas…0_L001_R2_001.fastq.gz: 36% /3.194Gi, 34.909Mi/s, 59s
 * Logs_Intermediates/Fas…0_L002_R1_001.fastq.gz: 39% /3.209Gi, 39.176Mi/s, 50s
 * Logs_Intermediates/Fas…0_L002_R2_001.fastq.gz: 34% /3.216Gi, 32.032Mi/s, 1m6s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 23% /4.982Gi, 35.340Mi/s, 1m49s
 * ica_logs/work/67/bf96a…66868b4fd/.command.log: 54% /71.329Mi, 3.272Mi/s, 9s
 * ica_logs/work/67/bf96a…1bf3b29d0/.command.out: 37% /66.988Mi, 4.599Mi/s, 9s
 * ica_logs/work/67/bf96a…01b3f1d91/.command.log: 68% /71.165Mi, 11.249Mi/s, 1s
 * ica_logs/work/67/bf96a…Log-20260603230818.log: 77% /69.676Mi, 11.999Mi/s, 1s
 * ica_logs/work/67/bf96a…f7645213b/.command.out: 48% /66.330Mi, 7.249Mi/s, 4s
 * ica_logs/work/67/bf96a…Log-20260603230714.log: 71% /66.872Mi, 14.665Mi/s, 1s
 * ica_logs/work/67/bf96a…Log-20260603230729.log:  7% /66.877Mi, 2.498Mi/s, 24s
 * ica_logs/work/67/bf96a…9e5106d65/.command.log: 37% /66.972Mi, 12.996Mi/s, 3s
 * ica_logs/work/67/bf96a…9e5106d65/.command.out: 58% /66.972Mi, 23.995Mi/s, 1s
 * ica_logs/work/67/bf96a…Log-20260603230958.log: 53% /71.049Mi, 18.996Mi/s, 1s
 * ica_logs/work/67/bf96a…Log-20260603230642.log: 12% /66.217Mi, 5.996Mi/s, 9s
 * ica_logs/work/67/bf96a…3193132d7/.command.log:  6% /71.846Mi, 3.996Mi/s, 16s
 * ica_logs/work/67/bf96a…3193132d7/.command.out: 36% /71.846Mi, 17.996Mi/s, 2s
 * ica_logs/work/c9/18d5f…82f8cf113d/.command.sh:100% /1.425Ki, 0/s, -
 * ica_logs/work/67/bf96a…a581a2efd/.command.run:100% /10.964Ki, 0/s, -
 * ica_logs/work/67/bf96a…ea581a2efd/.command.sh: transferring
 * ica_logs/work/67/bf96a…81a2efd/.command.trace:100% /201, 0/s, -
 * ica_logs/work/67/bf96a…54ea581a2efd/.exitcode:100% /1, 0/s, -
 * ica_logs/work/67/bf96a…Log-20260603230818.log: transferring
 * ica_logs/work/f9/f8f98…b1e4c75/.command.begin:  0% /0, 0/s, -
 * ica_logs/work/f9/f8f98…bbb1e4c75/.command.err:  0% /0, 0/s, -
 * ica_logs/work/f9/f8f98…bbb1e4c75/.command.log: transferring
 * ica_logs/work/f9/f8f98…bbb1e4c75/.command.out: transferring
 * ica_logs/work/f9/f8f98…bbb1e4c75/.command.run: transferring
 * ica_logs/work/f9/f8f98…3bbb1e4c75/.command.sh: transferring
 * ica_logs/work/f9/f8f98…b1e4c75/.command.trace: transferring
 * ica_logs/work/f9/f8f98…c93bbb1e4c75/.exitcode: transferring
 * ica_logs/work/f9/f8f98…a.snperror-sampler.log: transferring
 * ica_logs/out/Logs_Inte…b4b9baad8/.command.err: transferring
 * ica_logs/out/Logs_Inte…b4b9baad8/.command.log: transferring
 * ica_logs/out/Logs_Inte…b4b9baad8/.command.out: transferring
 * ica_logs/out/Logs_Inte…b4b9baad8/.command.run: transferring
 * ica_logs/out/Logs_Inte…7b4b9baad8/.command.sh: transferring
 * ica_logs/work/c9/18d5f…77cfda7/.command.begin: transferring
 * ica_logs/work/c9/18d5f…1877cfda7/.command.err: transferring
 * ica_logs/work/c9/18d5f…1877cfda7/.command.log: transferring
 * ica_logs/work/c9/18d5f…1877cfda7/.command.out: transferring

2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/95/9f79165c1bb11a54285682f8cf113d/.command.sh: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d7/2c6015a46970fa26ad54ea581a2efd/.command.run: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d7/2c6015a46970fa26ad54ea581a2efd/.command.trace: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/b1/7bf4092724e60564dbc93bbb1e4c75/.command.begin: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d7/2c6015a46970fa26ad54ea581a2efd/.command.sh: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/b1/7bf4092724e60564dbc93bbb1e4c75/.command.err: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/b1/7bf4092724e60564dbc93bbb1e4c75/.command.log: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/b1/7bf4092724e60564dbc93bbb1e4c75/.command.out: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/b1/7bf4092724e60564dbc93bbb1e4c75/.exitcode: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d7/2c6015a46970fa26ad54ea581a2efd/.exitcode: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/b1/7bf4092724e60564dbc93bbb1e4c75/.command.run: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2f/6fa99df8f93f9a5ac11c7b4b9baad8/.command.out: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/b1/7bf4092724e60564dbc93bbb1e4c75/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2f/6fa99df8f93f9a5ac11c7b4b9baad8/.command.err: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/98/2c7636679afdc36eee5fd1877cfda7/.command.begin: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2f/6fa99df8f93f9a5ac11c7b4b9baad8/.command.log: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/b1/7bf4092724e60564dbc93bbb1e4c75/.command.trace: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/b1/7bf4092724e60564dbc93bbb1e4c75/.command.sh: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2f/6fa99df8f93f9a5ac11c7b4b9baad8/.command.sh: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/2f/6fa99df8f93f9a5ac11c7b4b9baad8/.command.run: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/98/2c7636679afdc36eee5fd1877cfda7/.command.log: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/98/2c7636679afdc36eee5fd1877cfda7/.exitcode: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/98/2c7636679afdc36eee5fd1877cfda7/.command.err: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/98/2c7636679afdc36eee5fd1877cfda7/.command.trace: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/98/2c7636679afdc36eee5fd1877cfda7/.command.run: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/ad/e7e2de289852742aeca26bca4e92e7/.command.begin: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/ad/e7e2de289852742aeca26bca4e92e7/.command.out: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/ad/e7e2de289852742aeca26bca4e92e7/.command.err: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/ad/e7e2de289852742aeca26bca4e92e7/.command.trace: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/ad/e7e2de289852742aeca26bca4e92e7/.command.run: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/98/2c7636679afdc36eee5fd1877cfda7/.command.out: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/ad/e7e2de289852742aeca26bca4e92e7/.exitcode: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/ad/e7e2de289852742aeca26bca4e92e7/.command.sh: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/30/2af1d73fbd31ec5ae55a80340defca/.command.err: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/ad/e7e2de289852742aeca26bca4e92e7/.command.log: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/30/2af1d73fbd31ec5ae55a80340defca/.command.sh: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/98/2c7636679afdc36eee5fd1877cfda7/.command.sh: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/30/2af1d73fbd31ec5ae55a80340defca/.command.run: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/30/2af1d73fbd31ec5ae55a80340defca/.command.env: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/30/2af1d73fbd31ec5ae55a80340defca/.command.log: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/ad/e7e2de289852742aeca26bca4e92e7/Nirvana-20260603210944.log: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/30/2af1d73fbd31ec5ae55a80340defca/.command.out: Copied (new)
2026/06/04 17:54:22 INFO  : Logs_Intermediates/nextflow_work_logs/49/7f815b5bf4562016090338b8787361/.command.err: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/8e/14ed6993c7edcda747a25f9141e6a7/Tmb/dragen_run_1780526200706_318187.log: Copied (new)
2026/06/04 17:54:22 INFO  : Logs_Intermediates/nextflow_work_logs/4a/1b90ca5348b407ad728fc68d2d6d71/.command.out: Copied (new)
2026/06/04 17:54:22 INFO  : Logs_Intermediates/nextflow_work_logs/4a/1b90ca5348b407ad728fc68d2d6d71/.command.err: Copied (new)
2026/06/04 17:54:22 INFO  : Logs_Intermediates/nextflow_work_logs/49/7f815b5bf4562016090338b8787361/.command.run: Copied (new)
2026/06/04 17:54:22 INFO  : Logs_Intermediates/nextflow_work_logs/4a/1b90ca5348b407ad728fc68d2d6d71/.command.log: Copied (new)
2026/06/04 17:54:22 INFO  : Logs_Intermediates/nextflow_work_logs/49/7f815b5bf4562016090338b8787361/.command.sh: Copied (new)
2026/06/04 17:54:22 INFO  : Logs_Intermediates/nextflow_work_logs/49/7f815b5bf4562016090338b8787361/.command.log: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/8e/14ed6993c7edcda747a25f9141e6a7/Tmb/dragen_syslog_1780526200697_318187.log: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a0/abf5ef050d7c986b2a7a09429d415e/.command.err: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a0/abf5ef050d7c986b2a7a09429d415e/.command.begin: Copied (new)
2026/06/04 17:54:22 INFO  : Logs_Intermediates/nextflow_work_logs/4a/1b90ca5348b407ad728fc68d2d6d71/.command.sh: Copied (new)
2026/06/04 17:54:22 INFO  : Logs_Intermediates/nextflow_work_logs/49/7f815b5bf4562016090338b8787361/.command.out: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a0/abf5ef050d7c986b2a7a09429d415e/.command.log: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a0/abf5ef050d7c986b2a7a09429d415e/.command.run: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a0/abf5ef050d7c986b2a7a09429d415e/.exitcode: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/8f/016edac5ac7efbc005e4d28d03ff87/Contamination/Spoiler-20260603224725.log: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a0/abf5ef050d7c986b2a7a09429d415e/.command.out: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/99/051356883b877d6c7c7724bc3961f1/.command.begin: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a0/abf5ef050d7c986b2a7a09429d415e/.command.sh: Copied (new)
2026/06/04 17:54:22 INFO  : Logs_Intermediates/nextflow_work_logs/4a/1b90ca5348b407ad728fc68d2d6d71/.command.run: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/99/051356883b877d6c7c7724bc3961f1/.exitcode: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a0/abf5ef050d7c986b2a7a09429d415e/.command.trace: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d9/adb0bcf8fbf79e8b17d7adb12e2e7f/.command.begin: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/99/051356883b877d6c7c7724bc3961f1/.command.log: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d9/adb0bcf8fbf79e8b17d7adb12e2e7f/.command.err: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/99/051356883b877d6c7c7724bc3961f1/.command.run: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/99/051356883b877d6c7c7724bc3961f1/.command.err: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/99/051356883b877d6c7c7724bc3961f1/.command.sh: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d9/adb0bcf8fbf79e8b17d7adb12e2e7f/.command.out: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d9/adb0bcf8fbf79e8b17d7adb12e2e7f/.command.run: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/99/051356883b877d6c7c7724bc3961f1/.command.out: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/99/051356883b877d6c7c7724bc3961f1/.command.trace: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d9/adb0bcf8fbf79e8b17d7adb12e2e7f/.command.env: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d9/adb0bcf8fbf79e8b17d7adb12e2e7f/.command.log: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d9/adb0bcf8fbf79e8b17d7adb12e2e7f/.command.trace: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/32/897d7a7e13e2c8daf127d628568cd9/.command.err: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d9/adb0bcf8fbf79e8b17d7adb12e2e7f/.command.sh: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/32/897d7a7e13e2c8daf127d628568cd9/.command.out: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d9/adb0bcf8fbf79e8b17d7adb12e2e7f/.exitcode: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/b7/c4281983fb51641247170fb1df1819/.command.err: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/32/897d7a7e13e2c8daf127d628568cd9/.command.log: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/b7/c4281983fb51641247170fb1df1819/.command.begin: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/32/897d7a7e13e2c8daf127d628568cd9/.command.run: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/32/897d7a7e13e2c8daf127d628568cd9/.command.sh: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/b7/c4281983fb51641247170fb1df1819/.command.out: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/b7/c4281983fb51641247170fb1df1819/.exitcode: Copied (new)
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2026/06/04 17:54:22 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/b7/c4281983fb51641247170fb1df1819/.command.sh: Copied (new)
2026/06/04 17:54:22 INFO  : Logs_Intermediates/nextflow_work_logs/4b/b87ba597aea7204bf763ddce750410/.command.err: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/b7/c4281983fb51641247170fb1df1819/Nirvana-20260603211940.log: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a6/92faecd98be80aad1c9a24e4790f30/DnaDragenExonCnvCaller/dragen_run_1780526536863_322907.log: Copied (new)
2026/06/04 17:54:22 INFO  : Logs_Intermediates/nextflow_work_logs/4b/b87ba597aea7204bf763ddce750410/.command.out: Copied (new)
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2026/06/04 17:54:22 INFO  : Logs_Intermediates/nextflow_work_logs/4b/b87ba597aea7204bf763ddce750410/.command.run: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/b7/c4281983fb51641247170fb1df1819/.command.log: Copied (new)
2026/06/04 17:54:22 INFO  : Logs_Intermediates/nextflow_work_logs/4b/b87ba597aea7204bf763ddce750410/.command.sh: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d9/c18c05ce174e14e31bad792ba28b25/.command.begin: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/b7/c4281983fb51641247170fb1df1819/.command.trace: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d9/c18c05ce174e14e31bad792ba28b25/.command.err: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d9/c18c05ce174e14e31bad792ba28b25/.command.out: Copied (new)
2026/06/04 17:54:22 INFO  : Logs_Intermediates/nextflow_work_logs/4b/b87ba597aea7204bf763ddce750410/.command.log: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d9/c18c05ce174e14e31bad792ba28b25/.command.log: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ab/97b35373f7d8b5c4437547df44e4e6/Gis/dragen_syslog_1780525289120_284264.log: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/9c/093008876300c43b8b044718673f14/.command.begin: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d9/c18c05ce174e14e31bad792ba28b25/.command.run: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/9c/093008876300c43b8b044718673f14/.command.err: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d9/c18c05ce174e14e31bad792ba28b25/.exitcode: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/9c/093008876300c43b8b044718673f14/.command.log: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/9c/093008876300c43b8b044718673f14/.command.out: Copied (new)
2026/06/04 17:54:22 INFO  : Logs_Intermediates/DnaDragenCaller/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna/659_c8U-T1-TDNA-1_HLNLMDRX7_1_dna.bam: Multi-thread Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d9/c18c05ce174e14e31bad792ba28b25/.command.trace: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d9/c18c05ce174e14e31bad792ba28b25/.command.sh: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/9c/093008876300c43b8b044718673f14/.command.sh: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a6/92faecd98be80aad1c9a24e4790f30/DnaDragenExonCnvCaller/dragen_syslog_1780526536856_322907.log: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a3/3f2e1db48b80ea05ec55c47dbd3c37/.command.begin: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/9c/093008876300c43b8b044718673f14/.exitcode: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a3/3f2e1db48b80ea05ec55c47dbd3c37/.command.err: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a3/3f2e1db48b80ea05ec55c47dbd3c37/.exitcode: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/9c/093008876300c43b8b044718673f14/.command.trace: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/9c/093008876300c43b8b044718673f14/.command.run: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a8/724d8fc3a509919c4e480931772c8c/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a3/3f2e1db48b80ea05ec55c47dbd3c37/.command.log: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/9c/093008876300c43b8b044718673f14/659_cGn-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a3/3f2e1db48b80ea05ec55c47dbd3c37/.command.run: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a8/724d8fc3a509919c4e480931772c8c/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a3/3f2e1db48b80ea05ec55c47dbd3c37/.command.sh: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a3/3f2e1db48b80ea05ec55c47dbd3c37/.command.trace: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a3/3f2e1db48b80ea05ec55c47dbd3c37/.command.out: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/b8/78862f0d0aff0cfad346a773661991/.command.begin: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/32/d8da49e7fc3aa79a9e0a077b56502a/.command.run: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/b8/78862f0d0aff0cfad346a773661991/.command.err: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/32/d8da49e7fc3aa79a9e0a077b56502a/.command.out: Copied (new)
2026/06/04 17:54:22 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/32/d8da49e7fc3aa79a9e0a077b56502a/.command.log: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a8/724d8fc3a509919c4e480931772c8c/DnaDragenCaller/659_OV-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:54:23 INFO  : Logs_Intermediates/FastqGeneration/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna_S21_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a8/724d8fc3a509919c4e480931772c8c/DnaDragenCaller/dragen_syslog_1780521053168_131791.log: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/b8/78862f0d0aff0cfad346a773661991/.exitcode: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/32/d8da49e7fc3aa79a9e0a077b56502a/.command.sh: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/ba/b26c433be9f3efda5a439afd289d7f/.command.begin: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a8/724d8fc3a509919c4e480931772c8c/DnaDragenCaller/dragen_run_1780521053184_131791.log: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/b8/78862f0d0aff0cfad346a773661991/.command.log: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/b8/78862f0d0aff0cfad346a773661991/.command.out: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/32/d8da49e7fc3aa79a9e0a077b56502a/.command.err: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/b8/78862f0d0aff0cfad346a773661991/.command.sh: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/ba/b26c433be9f3efda5a439afd289d7f/.command.err: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/b8/78862f0d0aff0cfad346a773661991/.command.run: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/ba/b26c433be9f3efda5a439afd289d7f/.command.log: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/b8/78862f0d0aff0cfad346a773661991/.command.trace: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/ba/b26c433be9f3efda5a439afd289d7f/.command.out: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/b8/78862f0d0aff0cfad346a773661991/Nirvana-20260603224956.log: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/ba/b26c433be9f3efda5a439afd289d7f/.exitcode: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/ba/b26c433be9f3efda5a439afd289d7f/.command.sh: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/ba/b26c433be9f3efda5a439afd289d7f/.command.trace: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/b9/d650e9fc6ee416b163139371cc21d2/.command.begin: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/b9/d650e9fc6ee416b163139371cc21d2/.exitcode: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/b9/d650e9fc6ee416b163139371cc21d2/.command.sh: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/ba/b26c433be9f3efda5a439afd289d7f/.command.run: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/b8/d2f1e2562bdb693bcdbd542c083c0a/.command.begin: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/33/544d7988efde5180898582e4a8f1bd/.command.sh: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/b9/d650e9fc6ee416b163139371cc21d2/.command.err: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/33/544d7988efde5180898582e4a8f1bd/.command.log: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/b8/d2f1e2562bdb693bcdbd542c083c0a/.command.err: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/b9/d650e9fc6ee416b163139371cc21d2/.command.run: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/33/544d7988efde5180898582e4a8f1bd/.command.run: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/b9/d650e9fc6ee416b163139371cc21d2/.command.out: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/b8/d2f1e2562bdb693bcdbd542c083c0a/.command.out: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/b8/d2f1e2562bdb693bcdbd542c083c0a/.exitcode: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/b9/d650e9fc6ee416b163139371cc21d2/.command.trace: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/33/544d7988efde5180898582e4a8f1bd/.command.err: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/b9/d650e9fc6ee416b163139371cc21d2/.command.log: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/db/670f932a76879367aa7176f3a1dc03/.command.err: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/b8/d2f1e2562bdb693bcdbd542c083c0a/.command.log: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/db/670f932a76879367aa7176f3a1dc03/.command.begin: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/33/544d7988efde5180898582e4a8f1bd/.command.out: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/96/060310468cf9f62d9fac45bf6844e1/SampleAnalysisResults/659_ev0-T1-TDNA-1_HLNLMDRX7_1_SARJeantLog-20260603230818.log: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/b8/d2f1e2562bdb693bcdbd542c083c0a/.command.run: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/db/670f932a76879367aa7176f3a1dc03/.command.log: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/db/670f932a76879367aa7176f3a1dc03/.command.out: Copied (new)
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2026/06/04 17:54:23 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/db/670f932a76879367aa7176f3a1dc03/.exitcode: Copied (new)
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2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/b8/d2f1e2562bdb693bcdbd542c083c0a/.command.trace: Copied (new)
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2026/06/04 17:54:23 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/95/102c4bf07ba69daeede9d580cf2672/DnaDragenExonCnvCaller/dragen_run_1780523557042_226952.log: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/96/eb39ef4543fbddc2a8661f62ac7ce5/SampleAnalysisResults/659_bea-T1-TDNA-1_HLNLMDRX7_1_SARJeantLog-20260603230714.log: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/af/162fde26e4468fad33ff6ab5dce5fa/Gis/dragen_run_1780523944448_238046.log: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d9/e2a9ec03aa11c62ad03e96cbc59849/.command.trace: Copied (new)
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2026/06/04 17:54:23 INFO  : Logs_Intermediates/nextflow_work_logs/4c/5aa08411880da1a183123bb2d99c95/.command.err: Copied (new)
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2026/06/04 17:54:23 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/a0/3279df72ca83c471e6a7d3757d24d5/.exitcode: Copied (new)
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2026/06/04 17:54:23 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a4/74ae99ecdea3bb089877e89830770b/.command.begin: Copied (new)
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2026/06/04 17:54:23 INFO  : Logs_Intermediates/nextflow_work_logs/4c/5aa08411880da1a183123bb2d99c95/.command.log: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a4/74ae99ecdea3bb089877e89830770b/.command.err: Copied (new)
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2026/06/04 17:54:23 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a4/74ae99ecdea3bb089877e89830770b/.command.out: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a4/74ae99ecdea3bb089877e89830770b/.exitcode: Copied (new)
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2026/06/04 17:54:23 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ab/de7143ca4ed4560061f74ab176f31b/LrCalculator/LrCalculator-20260603224246.log: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a9/ba2b00d738200f1c224c58259c144e/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a9/ba2b00d738200f1c224c58259c144e/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a9/ba2b00d738200f1c224c58259c144e/DnaDragenCaller/659_cYC-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a4/74ae99ecdea3bb089877e89830770b/.command.sh: Copied (new)
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2026/06/04 17:54:23 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ba/0f160e8c61e24ab274bd16c3428d41/.command.begin: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ba/0f160e8c61e24ab274bd16c3428d41/.exitcode: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ba/0f160e8c61e24ab274bd16c3428d41/.command.sh: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a4/74ae99ecdea3bb089877e89830770b/.command.run: Copied (new)
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2026/06/04 17:54:23 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/cd/94ac94eaca899fed3fb099e5106d65/.command.out: Copied (new)
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2026/06/04 17:54:23 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/33/794c1224cf5eacfb5b95f391d83a54/.command.log: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/33/794c1224cf5eacfb5b95f391d83a54/.command.run: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/e0/3fc225b6bc35f35b86604c759a875d/.command.err: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/33/794c1224cf5eacfb5b95f391d83a54/.command.err: Copied (new)
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2026/06/04 17:54:23 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ba/0f160e8c61e24ab274bd16c3428d41/.command.trace: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ba/0f160e8c61e24ab274bd16c3428d41/.command.log: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ba/0f160e8c61e24ab274bd16c3428d41/.command.out: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/33/794c1224cf5eacfb5b95f391d83a54/.command.out: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/e0/3fc225b6bc35f35b86604c759a875d/.exitcode: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/33/794c1224cf5eacfb5b95f391d83a54/.command.sh: Copied (new)
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2026/06/04 17:54:23 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/e0/3fc225b6bc35f35b86604c759a875d/.command.sh: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a9/ba2b00d738200f1c224c58259c144e/DnaDragenCaller/dragen_syslog_1780517370122_7324.log: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a5/7e399dc04f4f1489e105cfbc345ef3/.command.run: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a5/7e399dc04f4f1489e105cfbc345ef3/.command.err: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a5/7e399dc04f4f1489e105cfbc345ef3/.exitcode: Copied (new)
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2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/bc/c6d95e943f34bb87f81f81650f1784/.command.begin: Copied (new)
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2026/06/04 17:54:23 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/9f/f955a663f0edd0f326cd56ecc1e18e/Contamination/Spoiler-20260603225240.log: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a5/7e399dc04f4f1489e105cfbc345ef3/.command.log: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/bc/c6d95e943f34bb87f81f81650f1784/.exitcode: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/e2/8a56ed2f9abd3d1c4ebf471d5a67fe/.command.begin: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/bc/c6d95e943f34bb87f81f81650f1784/.command.run: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/bc/c6d95e943f34bb87f81f81650f1784/.command.err: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/a9/ba2b00d738200f1c224c58259c144e/DnaDragenCaller/dragen_run_1780517370138_7324.log: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/e2/8a56ed2f9abd3d1c4ebf471d5a67fe/.command.err: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/bc/c6d95e943f34bb87f81f81650f1784/.command.sh: Copied (new)
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2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/bc/c6d95e943f34bb87f81f81650f1784/.command.log: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/bd/03cf1ad06b0b7fc430c79179710f47/.command.begin: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/e2/8a56ed2f9abd3d1c4ebf471d5a67fe/.command.trace: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/bd/03cf1ad06b0b7fc430c79179710f47/.command.err: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/bc/c6d95e943f34bb87f81f81650f1784/.command.trace: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/bd/03cf1ad06b0b7fc430c79179710f47/.command.out: Copied (new)
2026/06/04 17:54:23 INFO  : Logs_Intermediates/nextflow_work_logs/4c/64bbbae6f7d83eaf6870a51fecf90f/.command.err: Copied (new)
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2026/06/04 17:54:23 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/bd/03cf1ad06b0b7fc430c79179710f47/.exitcode: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/e2/8a56ed2f9abd3d1c4ebf471d5a67fe/.exitcode: Copied (new)
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2026/06/04 17:54:23 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/a6/ff115d645988967569e00ea5663b0c/.command.err: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/bd/03cf1ad06b0b7fc430c79179710f47/.command.log: Copied (new)
2026/06/04 17:54:23 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/bd/03cf1ad06b0b7fc430c79179710f47/.command.trace: Copied (new)
2026/06/04 17:54:23 INFO  : Logs_Intermediates/nextflow_work_logs/4c/64bbbae6f7d83eaf6870a51fecf90f/.command.run: Copied (new)
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2026/06/04 17:54:23 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/a6/ff115d645988967569e00ea5663b0c/.command.out: Copied (new)
2026/06/04 17:54:23 INFO  : Logs_Intermediates/nextflow_work_logs/4c/64bbbae6f7d83eaf6870a51fecf90f/.command.sh: Copied (new)
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2026/06/04 17:54:24 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/bf/51af32f12da4e6c138a2801b3f1d91/.command.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a4/8b5e68dfabaebee6146f52e19dc98d/.command.begin: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a4/8b5e68dfabaebee6146f52e19dc98d/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/a6/ff115d645988967569e00ea5663b0c/.exitcode: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/a6/ff115d645988967569e00ea5663b0c/.command.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/a6/ff115d645988967569e00ea5663b0c/.command.run: Copied (new)
2026/06/04 17:54:24 INFO  : Logs_Intermediates/nextflow_work_logs/4c/64bbbae6f7d83eaf6870a51fecf90f/.command.out: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/a6/ff115d645988967569e00ea5663b0c/.command.sh: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a4/8b5e68dfabaebee6146f52e19dc98d/.command.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/a6/ff115d645988967569e00ea5663b0c/Nirvana-20260603223439.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a4/8b5e68dfabaebee6146f52e19dc98d/.exitcode: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a4/8b5e68dfabaebee6146f52e19dc98d/.command.run: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/35/5a1cd5d4e249ca4c71108aebe87bf1/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/a6/ff115d645988967569e00ea5663b0c/.command.trace: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ba/5f48ce1ed717594a2aab7e61e8e93b/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ba/5f48ce1ed717594a2aab7e61e8e93b/.command.begin: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/35/5a1cd5d4e249ca4c71108aebe87bf1/.command.sh: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/35/5a1cd5d4e249ca4c71108aebe87bf1/.command.run: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ba/5f48ce1ed717594a2aab7e61e8e93b/.command.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/35/5a1cd5d4e249ca4c71108aebe87bf1/.command.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ba/5f48ce1ed717594a2aab7e61e8e93b/.exitcode: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a4/8b5e68dfabaebee6146f52e19dc98d/.command.trace: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ba/5f48ce1ed717594a2aab7e61e8e93b/.command.out: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ba/5f48ce1ed717594a2aab7e61e8e93b/.command.run: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ba/5f48ce1ed717594a2aab7e61e8e93b/.command.trace: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ba/5f48ce1ed717594a2aab7e61e8e93b/.command.sh: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/e7/99e12e058cffecd1fbd07bbdba794d/.command.begin: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/35/5a1cd5d4e249ca4c71108aebe87bf1/.command.out: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/e7/99e12e058cffecd1fbd07bbdba794d/.command.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/98/2c7636679afdc36eee5fd1877cfda7/Gis/dragen_run_1780524207804_249054.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/e7/99e12e058cffecd1fbd07bbdba794d/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a4/8b5e68dfabaebee6146f52e19dc98d/.command.sh: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/e7/99e12e058cffecd1fbd07bbdba794d/.command.out: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a4/8b5e68dfabaebee6146f52e19dc98d/.command.out: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/98/2c7636679afdc36eee5fd1877cfda7/Gis/dragen_syslog_1780524207797_249054.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/e7/99e12e058cffecd1fbd07bbdba794d/.command.sh: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/e7/99e12e058cffecd1fbd07bbdba794d/.exitcode: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/be/ab9431fe4232dd19c1a3e84d2cca30/.command.begin: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/be/ab9431fe4232dd19c1a3e84d2cca30/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/b1/7bf4092724e60564dbc93bbb1e4c75/Contamination/Spoiler-20260603225602.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/e7/99e12e058cffecd1fbd07bbdba794d/.command.run: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/be/ab9431fe4232dd19c1a3e84d2cca30/.command.out: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/be/ab9431fe4232dd19c1a3e84d2cca30/.command.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a5/d8c0ac95c709d7cd0f1a05db044afe/.command.begin: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a5/d8c0ac95c709d7cd0f1a05db044afe/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a5/d8c0ac95c709d7cd0f1a05db044afe/.command.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/be/ab9431fe4232dd19c1a3e84d2cca30/.exitcode: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/e7/99e12e058cffecd1fbd07bbdba794d/.command.trace: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/be/ab9431fe4232dd19c1a3e84d2cca30/.command.sh: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/be/ab9431fe4232dd19c1a3e84d2cca30/.command.run: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a5/d8c0ac95c709d7cd0f1a05db044afe/.exitcode: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a5/d8c0ac95c709d7cd0f1a05db044afe/.command.run: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/be/ab9431fe4232dd19c1a3e84d2cca30/.command.trace: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a5/d8c0ac95c709d7cd0f1a05db044afe/.command.sh: Copied (new)
2026/06/04 17:54:24 INFO  : Logs_Intermediates/nextflow_work_logs/4e/538b6aac65e90b7b179b25c0291cc4/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a5/d8c0ac95c709d7cd0f1a05db044afe/.command.trace: Copied (new)
2026/06/04 17:54:24 INFO  : Logs_Intermediates/nextflow_work_logs/4e/538b6aac65e90b7b179b25c0291cc4/.command.run: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/ad/1458bd2f949604bcb25970959c6330/.command.begin: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a5/d8c0ac95c709d7cd0f1a05db044afe/.command.out: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/ad/1458bd2f949604bcb25970959c6330/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/ad/1458bd2f949604bcb25970959c6330/.command.out: Copied (new)
2026/06/04 17:54:24 INFO  : Logs_Intermediates/nextflow_work_logs/4e/538b6aac65e90b7b179b25c0291cc4/.command.sh: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a5/d8c0ac95c709d7cd0f1a05db044afe/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/ad/1458bd2f949604bcb25970959c6330/.command.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/ad/1458bd2f949604bcb25970959c6330/.command.sh: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/ad/1458bd2f949604bcb25970959c6330/.exitcode: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/a8/3ee49f2b1f784ec13f655c4bbded99/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/a8/3ee49f2b1f784ec13f655c4bbded99/.command.begin: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/ad/1458bd2f949604bcb25970959c6330/.command.trace: Copied (new)
2026/06/04 17:54:24 INFO  : Logs_Intermediates/nextflow_work_logs/4e/538b6aac65e90b7b179b25c0291cc4/.command.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/a8/3ee49f2b1f784ec13f655c4bbded99/.command.out: Copied (new)
2026/06/04 17:54:24 INFO  : Logs_Intermediates/nextflow_work_logs/4d/c48001e9d799d128a0c0e06a05f28f/.command.run: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/ad/1458bd2f949604bcb25970959c6330/.command.run: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/be/c7570ceeeba52a4ef4ac6876088160/.command.begin: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/a8/3ee49f2b1f784ec13f655c4bbded99/.command.sh: Copied (new)
2026/06/04 17:54:24 INFO  : Logs_Intermediates/nextflow_work_logs/4d/c48001e9d799d128a0c0e06a05f28f/.command.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/a8/3ee49f2b1f784ec13f655c4bbded99/.command.run: Copied (new)
2026/06/04 17:54:24 INFO  : Logs_Intermediates/nextflow_work_logs/4d/c48001e9d799d128a0c0e06a05f28f/.command.out: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/a8/3ee49f2b1f784ec13f655c4bbded99/.command.trace: Copied (new)
2026/06/04 17:54:24 INFO  : Logs_Intermediates/nextflow_work_logs/4e/538b6aac65e90b7b179b25c0291cc4/.command.out: Copied (new)
2026/06/04 17:54:24 INFO  : Logs_Intermediates/nextflow_work_logs/4d/c48001e9d799d128a0c0e06a05f28f/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/a8/3ee49f2b1f784ec13f655c4bbded99/.command.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/a8/3ee49f2b1f784ec13f655c4bbded99/.exitcode: Copied (new)
2026/06/04 17:54:24 INFO  : Logs_Intermediates/nextflow_work_logs/4d/c48001e9d799d128a0c0e06a05f28f/.command.sh: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/be/c7570ceeeba52a4ef4ac6876088160/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/be/c7570ceeeba52a4ef4ac6876088160/.command.run: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/be/c7570ceeeba52a4ef4ac6876088160/.command.out: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/be/c7570ceeeba52a4ef4ac6876088160/.exitcode: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/be/c7570ceeeba52a4ef4ac6876088160/.command.sh: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/be/c7570ceeeba52a4ef4ac6876088160/.command.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/37/4e178cd62cfb398f90470ecc6bdf91/.command.out: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/37/4e178cd62cfb398f90470ecc6bdf91/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/d0/ff17c4f0512b2bb75e8303193132d7/.command.out: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/bf/5cb9ab5fb2de2f36e07ecdc18eaacc/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/37/4e178cd62cfb398f90470ecc6bdf91/.command.run: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/bf/5cb9ab5fb2de2f36e07ecdc18eaacc/.command.begin: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/37/4e178cd62cfb398f90470ecc6bdf91/.command.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/bf/5cb9ab5fb2de2f36e07ecdc18eaacc/.command.log: Copied (new)
2026/06/04 17:54:24 INFO  : Logs_Intermediates/nextflow_work_logs/4c/7950a6fe78c71ec045906158fec85c/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/af/3021e003f823248c1f70aa48185017/.command.begin: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ba/76b3ff769f1928e899118a8cfa6ee7/.command.begin: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/ad/c62585ceacb99094796bf99ceb3a72/.command.begin: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/ad/d0f9b7185e84b471e406a114091fec/.command.begin: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/37/4e178cd62cfb398f90470ecc6bdf91/.command.sh: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/99/051356883b877d6c7c7724bc3961f1/Gis/dragen_run_1780524444274_255833.log: Copied (new)
2026/06/04 17:54:24 INFO  : Logs_Intermediates/nextflow_work_logs/4f/854bb1127d69bade7b0f325c1f3806/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a0/abf5ef050d7c986b2a7a09429d415e/LrCalculator/LrCalculator-20260603223930.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/38/6b2c502b646dc9a0de1730715b87b0/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : Logs_Intermediates/nextflow_work_logs/4e/8617a429364de74de15973da6b6628/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/af/3021e003f823248c1f70aa48185017/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/c2/84ae472dae4d885fb338336db7607a/.command.begin: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/e7/b50f4820defc0237b2af16ef872c53/.command.begin: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/c1/5db9fc49e960bca57cd3bd29b002a7/.command.begin: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/bf/5cb9ab5fb2de2f36e07ecdc18eaacc/.command.run: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/bf/5cb9ab5fb2de2f36e07ecdc18eaacc/.command.out: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/be/c7570ceeeba52a4ef4ac6876088160/.command.trace: Copied (new)
2026/06/04 17:54:24 INFO  : Logs_Intermediates/nextflow_work_logs/4c/7950a6fe78c71ec045906158fec85c/.command.log: Copied (new)
2026/06/04 17:54:24 INFO  : Logs_Intermediates/nextflow_work_logs/4f/854bb1127d69bade7b0f325c1f3806/.command.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/b1/90337711ed7e80b1966c0979c3b459/.command.begin: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/b0/024a7c344a2d5c25b4033cb9bfa89d/.command.begin: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/eb/d9d62d138a4820eb223ffa5213e299/.command.begin: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ba/76b3ff769f1928e899118a8cfa6ee7/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : Logs_Intermediates/nextflow_work_logs/50/26405033fd5701cbd00dabbca8c963/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/ad/d0f9b7185e84b471e406a114091fec/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : Logs_Intermediates/nextflow_work_logs/4d/fadb06c9be9316041d953ade94cb69/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/bf/5cb9ab5fb2de2f36e07ecdc18eaacc/.command.sh: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/99/051356883b877d6c7c7724bc3961f1/Gis/dragen_syslog_1780524444267_255833.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/af/a96c67b24e738e688355727e3e838b/.command.begin: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/c5/116451c40bbf0aa015eec07a9965a3/.command.begin: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/38/6b2c502b646dc9a0de1730715b87b0/.command.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a3/3f2e1db48b80ea05ec55c47dbd3c37/Tmb/dragen_run_1780526296152_322844.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/c2/84ae472dae4d885fb338336db7607a/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/f4/b135c37e74a14da2c353acd834112d/.command.begin: Copied (new)
2026/06/04 17:54:24 INFO  : Logs_Intermediates/nextflow_work_logs/4c/f9af72e19a7880b609fb8ee9eeed9f/.command.env: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/9c/093008876300c43b8b044718673f14/Contamination/Spoiler-20260603224726.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/e7/b50f4820defc0237b2af16ef872c53/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/ad/c62585ceacb99094796bf99ceb3a72/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/cb/630e1d49837e5a19a901241f88a2a0/.command.begin: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/ba/b26c433be9f3efda5a439afd289d7f/Tmb/dragen_run_1780526815478_334245.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/eb/d9d62d138a4820eb223ffa5213e299/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : Logs_Intermediates/nextflow_work_logs/51/8eb63b371d4f78658bdcf9cb52e042/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/c1/5db9fc49e960bca57cd3bd29b002a7/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/39/2943812df08c8b8e29034a3519998b/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/b0/024a7c344a2d5c25b4033cb9bfa89d/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/af/3021e003f823248c1f70aa48185017/.command.log: Copied (new)
2026/06/04 17:54:24 INFO  : Logs_Intermediates/nextflow_work_logs/4c/7950a6fe78c71ec045906158fec85c/.command.out: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/b9/d650e9fc6ee416b163139371cc21d2/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/c5/116451c40bbf0aa015eec07a9965a3/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : Logs_Intermediates/nextflow_work_logs/4e/8617a429364de74de15973da6b6628/.command.log: Copied (new)
2026/06/04 17:54:24 INFO  : Logs_Intermediates/nextflow_work_logs/50/26405033fd5701cbd00dabbca8c963/.command.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/38/cb96655a363120b3331f6869339d8e/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/f4/b135c37e74a14da2c353acd834112d/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/cd/94ac94eaca899fed3fb099e5106d65/.command.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/ad/d0f9b7185e84b471e406a114091fec/.command.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a3/3f2e1db48b80ea05ec55c47dbd3c37/Tmb/dragen_syslog_1780526296144_322844.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/af/a96c67b24e738e688355727e3e838b/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ba/76b3ff769f1928e899118a8cfa6ee7/.command.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/c2/84ae472dae4d885fb338336db7607a/.command.log: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/b1/90337711ed7e80b1966c0979c3b459/.command.err: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/bf/5cb9ab5fb2de2f36e07ecdc18eaacc/.command.trace: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/38/6b2c502b646dc9a0de1730715b87b0/.command.out: Copied (new)
2026/06/04 17:54:24 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/ad/c62585ceacb99094796bf99ceb3a72/.command.log: Copied (new)
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2026/06/04 17:54:24 INFO  : Logs_Intermediates/nextflow_work_logs/4f/854bb1127d69bade7b0f325c1f3806/.command.run: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/b3/650ae04aa20e5b902cd31a5344c67d/.command.begin: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/af/3021e003f823248c1f70aa48185017/.command.out: Copied (new)
2026/06/04 17:54:25 INFO  : Logs_Intermediates/nextflow_work_logs/4e/8617a429364de74de15973da6b6628/.command.out: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/cb/630e1d49837e5a19a901241f88a2a0/.command.err: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/c1/d2afc93734eec0f5ea7cc071589b00/.command.begin: Copied (new)
2026/06/04 17:54:25 INFO  : Logs_Intermediates/nextflow_work_logs/4e/f564247c030baf218f48f7ada1d568/.command.env: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/39/2943812df08c8b8e29034a3519998b/.command.log: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/b9/d650e9fc6ee416b163139371cc21d2/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/ba/b26c433be9f3efda5a439afd289d7f/Tmb/dragen_syslog_1780526815470_334245.log: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/eb/d9d62d138a4820eb223ffa5213e299/.command.log: Copied (new)
2026/06/04 17:54:25 INFO  : Logs_Intermediates/nextflow_work_logs/4c/f9af72e19a7880b609fb8ee9eeed9f/.command.err: Copied (new)
2026/06/04 17:54:25 INFO  : Logs_Intermediates/nextflow_work_logs/4c/7950a6fe78c71ec045906158fec85c/.command.run: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/b0/024a7c344a2d5c25b4033cb9bfa89d/.command.log: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/c1/5db9fc49e960bca57cd3bd29b002a7/.command.log: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/ad/d0f9b7185e84b471e406a114091fec/.command.out: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/b1/90337711ed7e80b1966c0979c3b459/.command.log: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/bf/5cb9ab5fb2de2f36e07ecdc18eaacc/.exitcode: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/f4/b135c37e74a14da2c353acd834112d/.command.log: Copied (new)
2026/06/04 17:54:25 INFO  : Logs_Intermediates/nextflow_work_logs/51/8eb63b371d4f78658bdcf9cb52e042/.command.log: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ba/76b3ff769f1928e899118a8cfa6ee7/.command.out: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/c2/84ae472dae4d885fb338336db7607a/.command.out: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/c5/116451c40bbf0aa015eec07a9965a3/.command.log: Copied (new)
2026/06/04 17:54:25 INFO  : Logs_Intermediates/nextflow_work_logs/4f/854bb1127d69bade7b0f325c1f3806/.command.sh: Copied (new)
2026/06/04 17:54:25 INFO  : Logs_Intermediates/nextflow_work_logs/4d/fadb06c9be9316041d953ade94cb69/.command.out: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/34/881d84bed9313a2498994b6683c4cb/.command.err: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/38/6b2c502b646dc9a0de1730715b87b0/.command.run: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/ad/c62585ceacb99094796bf99ceb3a72/.command.out: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/38/cb96655a363120b3331f6869339d8e/.command.log: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/b3/650ae04aa20e5b902cd31a5344c67d/.command.err: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/39/2943812df08c8b8e29034a3519998b/.command.out: Copied (new)
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2026/06/04 17:54:25 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/af/3021e003f823248c1f70aa48185017/.command.run: Copied (new)
2026/06/04 17:54:25 INFO  : Logs_Intermediates/nextflow_work_logs/4e/f564247c030baf218f48f7ada1d568/.command.err: Copied (new)
2026/06/04 17:54:25 INFO  : Logs_Intermediates/nextflow_work_logs/50/26405033fd5701cbd00dabbca8c963/.command.out: Copied (new)
2026/06/04 17:54:25 INFO  : Logs_Intermediates/nextflow_work_logs/4e/8617a429364de74de15973da6b6628/.command.run: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/cb/630e1d49837e5a19a901241f88a2a0/.command.log: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/b9/d650e9fc6ee416b163139371cc21d2/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:54:25 INFO  : Logs_Intermediates/nextflow_work_logs/4c/7950a6fe78c71ec045906158fec85c/.command.sh: Copied (new)
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2026/06/04 17:54:25 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/af/a96c67b24e738e688355727e3e838b/.command.log: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/b0/024a7c344a2d5c25b4033cb9bfa89d/.command.out: Copied (new)
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2026/06/04 17:54:25 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/38/cb96655a363120b3331f6869339d8e/.command.out: Copied (new)
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2026/06/04 17:54:25 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/38/6b2c502b646dc9a0de1730715b87b0/.command.sh: Copied (new)
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2026/06/04 17:54:25 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/39/2943812df08c8b8e29034a3519998b/.command.run: Copied (new)
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2026/06/04 17:54:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/cb/422dfffec16cdd9abbc49a6346ca60/.command.begin: Copied (new)
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2026/06/04 17:54:25 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/eb/d9d62d138a4820eb223ffa5213e299/.command.run: Copied (new)
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2026/06/04 17:54:25 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/38/cb96655a363120b3331f6869339d8e/.command.run: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/b3/650ae04aa20e5b902cd31a5344c67d/.command.out: Copied (new)
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2026/06/04 17:54:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ba/76b3ff769f1928e899118a8cfa6ee7/.command.sh: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/f4/b135c37e74a14da2c353acd834112d/.command.run: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/f7/41ffe73d365c7d38438504866651fd/.command.begin: Copied (new)
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2026/06/04 17:54:25 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/34/881d84bed9313a2498994b6683c4cb/.command.out: Copied (new)
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2026/06/04 17:54:25 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/af/3021e003f823248c1f70aa48185017/.command.trace: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/b9/d650e9fc6ee416b163139371cc21d2/DnaDragenCaller/dragen_run_1780520473553_112931.log: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/af/a96c67b24e738e688355727e3e838b/.command.run: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/c1/d2afc93734eec0f5ea7cc071589b00/.command.out: Copied (new)
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2026/06/04 17:54:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/cb/422dfffec16cdd9abbc49a6346ca60/.command.err: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3a/abe6d86868d224479041b022465567/.command.err: Copied (new)
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2026/06/04 17:54:25 INFO  : Logs_Intermediates/nextflow_work_logs/51/8eb63b371d4f78658bdcf9cb52e042/.command.sh: Copied (new)
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2026/06/04 17:54:25 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/39/2943812df08c8b8e29034a3519998b/.command.sh: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/a0/3279df72ca83c471e6a7d3757d24d5/DnaDragenExonCnvCaller/dragen_syslog_1780525138434_277573.log: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/eb/d9d62d138a4820eb223ffa5213e299/.command.sh: Copied (new)
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2026/06/04 17:54:25 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/b0/024a7c344a2d5c25b4033cb9bfa89d/.command.sh: Copied (new)
2026/06/04 17:54:25 INFO  : Logs_Intermediates/nextflow_work_logs/4e/f564247c030baf218f48f7ada1d568/.command.out: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/38/cb96655a363120b3331f6869339d8e/.command.sh: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/b5/72612d9fa99181e363cea1cb51988e/.command.err: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/b1/90337711ed7e80b1966c0979c3b459/.command.sh: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ba/0f160e8c61e24ab274bd16c3428d41/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/af/a96c67b24e738e688355727e3e838b/.command.sh: Copied (new)
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2026/06/04 17:54:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ba/76b3ff769f1928e899118a8cfa6ee7/.command.trace: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/c5/116451c40bbf0aa015eec07a9965a3/.command.sh: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/ba/436edc4005531b0ef9c45affbf0513/.command.begin: Copied (new)
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2026/06/04 17:54:25 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/34/881d84bed9313a2498994b6683c4cb/.command.run: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/c2/84ae472dae4d885fb338336db7607a/.command.trace: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/f7/41ffe73d365c7d38438504866651fd/.command.err: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/cc/49f8181e000c44ecc311f49ae21337/.command.begin: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/f4/b135c37e74a14da2c353acd834112d/.command.sh: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/af/3021e003f823248c1f70aa48185017/.exitcode: Copied (new)
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2026/06/04 17:54:25 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/e7/b50f4820defc0237b2af16ef872c53/.command.trace: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3a/abe6d86868d224479041b022465567/.command.log: Copied (new)
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2026/06/04 17:54:25 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/b0/e8cd50c5de77b511d07930ba2da279/.command.log: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/cb/422dfffec16cdd9abbc49a6346ca60/.command.log: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/c1/d2afc93734eec0f5ea7cc071589b00/.command.run: Copied (new)
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2026/06/04 17:54:25 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/eb/d9d62d138a4820eb223ffa5213e299/.command.trace: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/ad/c62585ceacb99094796bf99ceb3a72/.exitcode: Copied (new)
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2026/06/04 17:54:25 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/b0/024a7c344a2d5c25b4033cb9bfa89d/.command.trace: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a5/7e399dc04f4f1489e105cfbc345ef3/DnaDragenExonCnvCaller/dragen_run_1780524138840_248235.log: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/b6/b2ea3d4a0091a14a5d5cb5ed0676ce/.command.begin: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ba/0f160e8c61e24ab274bd16c3428d41/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ba/76b3ff769f1928e899118a8cfa6ee7/.exitcode: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/f4/b135c37e74a14da2c353acd834112d/.command.trace: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/b5/72612d9fa99181e363cea1cb51988e/.command.log: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/cc/49f8181e000c44ecc311f49ae21337/.command.err: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/bc/c6d95e943f34bb87f81f81650f1784/DnaDragenExonCnvCaller/dragen_run_1780525603194_292934.log: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/af/a96c67b24e738e688355727e3e838b/.command.trace: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/c2/84ae472dae4d885fb338336db7607a/.exitcode: Copied (new)
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2026/06/04 17:54:25 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/c5/116451c40bbf0aa015eec07a9965a3/.command.trace: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/b5/b8cbe4984f3e87cfaf138f7645213b/.command.out: Copied (new)
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2026/06/04 17:54:25 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/e7/b50f4820defc0237b2af16ef872c53/.exitcode: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/34/881d84bed9313a2498994b6683c4cb/.command.sh: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/af/3021e003f823248c1f70aa48185017/Nirvana-20260603203909.log: Copied (new)
2026/06/04 17:54:25 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3a/abe6d86868d224479041b022465567/.command.out: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/cb/422dfffec16cdd9abbc49a6346ca60/.command.out: Copied (new)
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2026/06/04 17:54:26 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/b0/e8cd50c5de77b511d07930ba2da279/.command.out: Copied (new)
2026/06/04 17:54:26 INFO  : Logs_Intermediates/nextflow_work_logs/52/1a3e2b7c6983c178133fa02085d25e/.command.env: Copied (new)
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2026/06/04 17:54:26 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/ba/436edc4005531b0ef9c45affbf0513/.command.err: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/b1/90337711ed7e80b1966c0979c3b459/.exitcode: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/c1/d2afc93734eec0f5ea7cc071589b00/.command.sh: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ba/0f160e8c61e24ab274bd16c3428d41/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/eb/d9d62d138a4820eb223ffa5213e299/.exitcode: Copied (new)
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2026/06/04 17:54:26 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/b5/72612d9fa99181e363cea1cb51988e/.command.out: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/b5/21b01780a99cc86f5131b1bf3b29d0/.command.out: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/c5/116451c40bbf0aa015eec07a9965a3/.exitcode: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/a5/7e399dc04f4f1489e105cfbc345ef3/DnaDragenExonCnvCaller/dragen_syslog_1780524138832_248235.log: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/b6/b2ea3d4a0091a14a5d5cb5ed0676ce/.command.err: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/ad/d0f9b7185e84b471e406a114091fec/Nirvana-20260603210710.log: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/af/a96c67b24e738e688355727e3e838b/.exitcode: Copied (new)
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2026/06/04 17:54:26 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/f4/b135c37e74a14da2c353acd834112d/.exitcode: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/bd/03cf1ad06b0b7fc430c79179710f47/LrCalculator/LrCalculator-20260603224247.log: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/f7/41ffe73d365c7d38438504866651fd/.command.out: Copied (new)
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2026/06/04 17:54:26 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/c1/d95dd4b8d0026fe67f7011459e4099/.command.begin: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/c2/84ae472dae4d885fb338336db7607a/Nirvana-20260603204937.log: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/cf/bd32c4119e22e4607909af527cc6f9/.command.begin: Copied (new)
2026/06/04 17:54:26 INFO  : Logs_Intermediates/nextflow_work_logs/52/1a3e2b7c6983c178133fa02085d25e/.command.err: Copied (new)
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2026/06/04 17:54:26 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/34/bf1fe5064756e68064c3d67e8310d6/.command.err: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3a/abe6d86868d224479041b022465567/.command.run: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/ba/436edc4005531b0ef9c45affbf0513/.command.log: Copied (new)
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2026/06/04 17:54:26 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ba/76b3ff769f1928e899118a8cfa6ee7/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna.snperror-sampler.log: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/ff/84a17a2b568ff0e207d64ecb435317/.command.begin: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/bc/c6d95e943f34bb87f81f81650f1784/DnaDragenExonCnvCaller/dragen_syslog_1780525603186_292934.log: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/cb/422dfffec16cdd9abbc49a6346ca60/.command.run: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/cc/49f8181e000c44ecc311f49ae21337/.command.log: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/b0/e8cd50c5de77b511d07930ba2da279/.command.run: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3b/16cbdba1640d15c313f656126d9065/.command.err: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/bb/d0c72bc4712a134938bf9947feb12c/.command.begin: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/ce/007c0c9a549bc955ab2d8c06024171/.command.begin: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/c1/d2afc93734eec0f5ea7cc071589b00/.command.trace: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/f7/51c9eda6406a22dec1c8ef5dd22e21/.command.begin: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/b5/72612d9fa99181e363cea1cb51988e/.command.run: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/c5/116451c40bbf0aa015eec07a9965a3/Nirvana-20260603224249.log: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/af/a96c67b24e738e688355727e3e838b/Nirvana-20260603223643.log: Copied (new)
2026/06/04 17:54:26 INFO  : Logs_Intermediates/nextflow_work_logs/53/1ad70ed1b6eecf8b370f98a96daa0c/.command.err: Copied (new)
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2026/06/04 17:54:26 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/b9/1e59f69221d1e9a870ad657ee22f9e/.command.begin: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/b3/650ae04aa20e5b902cd31a5344c67d/.exitcode: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/be/c7570ceeeba52a4ef4ac6876088160/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model-0.log: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/ba/436edc4005531b0ef9c45affbf0513/.command.out: Copied (new)
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2026/06/04 17:54:26 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/b6/b2ea3d4a0091a14a5d5cb5ed0676ce/.command.log: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/cf/bd32c4119e22e4607909af527cc6f9/.command.err: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/c1/d95dd4b8d0026fe67f7011459e4099/.command.err: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3a/abe6d86868d224479041b022465567/.command.sh: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/be/ab9431fe4232dd19c1a3e84d2cca30/LrCalculator/LrCalculator-20260603224958.log: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/f7/41ffe73d365c7d38438504866651fd/.command.run: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/cc/49f8181e000c44ecc311f49ae21337/.command.out: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/d2/5a2e6f16bd76be760fc246435e8e71/.command.begin: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/cb/630e1d49837e5a19a901241f88a2a0/gen_coverage_reports.log: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/d0/bbeb8bae870502cfe65b6bb4465134/.command.begin: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/b0/e8cd50c5de77b511d07930ba2da279/.command.sh: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/b5/90537a29cb6477dd46ace5f0ec91f1/.command.err: Copied (new)
2026/06/04 17:54:26 INFO  : Logs_Intermediates/nextflow_work_logs/52/1a3e2b7c6983c178133fa02085d25e/.command.log: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/ff/84a17a2b568ff0e207d64ecb435317/.command.err: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/34/bf1fe5064756e68064c3d67e8310d6/.command.log: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/cb/422dfffec16cdd9abbc49a6346ca60/.command.sh: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/f7/51c9eda6406a22dec1c8ef5dd22e21/.command.err: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/ce/007c0c9a549bc955ab2d8c06024171/.command.err: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/bb/d0c72bc4712a134938bf9947feb12c/.command.err: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/be/c7570ceeeba52a4ef4ac6876088160/DnaDragenCaller/659_bsr-T1-TDNA-1_HLNLMDRX7_1_dna.pcr-model.log: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/ba/0f160e8c61e24ab274bd16c3428d41/DnaDragenCaller/dragen_run_1780517574894_9417.log: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3b/16cbdba1640d15c313f656126d9065/.command.log: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/34/f21c6f76a0fc4788e0d02e46d5a0e2/.command.err: Copied (new)
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2026/06/04 17:54:26 INFO  : Logs_Intermediates/nextflow_work_logs/53/1ad70ed1b6eecf8b370f98a96daa0c/.command.log: Copied (new)
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2026/06/04 17:54:26 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/bc/3f962b635f4033ca52837fdcf96d67/.command.begin: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/f7/41ffe73d365c7d38438504866651fd/.command.sh: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3c/29390d3cd5b69f5f5bc8b3e445e8ce/.command.err: Copied (new)
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2026/06/04 17:54:26 INFO  : Logs_Intermediates/nextflow_work_logs/56/3648a87384af5ce9e643826198a004/.command.err: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/cc/49f8181e000c44ecc311f49ae21337/.command.run: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/b9/1e59f69221d1e9a870ad657ee22f9e/.command.err: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/c1/d95dd4b8d0026fe67f7011459e4099/.command.log: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/b3/650ae04aa20e5b902cd31a5344c67d/Nirvana-20260603223930.log: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/ba/436edc4005531b0ef9c45affbf0513/.command.run: Copied (new)
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2026/06/04 17:54:26 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/34/bf1fe5064756e68064c3d67e8310d6/.command.out: Copied (new)
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2026/06/04 17:54:26 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3b/dc1889c7028fb2e0062828b994cb6b/.command.err: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3b/16cbdba1640d15c313f656126d9065/.command.out: Copied (new)
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2026/06/04 17:54:26 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3c/29390d3cd5b69f5f5bc8b3e445e8ce/.command.log: Copied (new)
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2026/06/04 17:54:26 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/d1/3dbc6051ec20b01dcb121ea3936653/.command.err: Copied (new)
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2026/06/04 17:54:26 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/ce/007c0c9a549bc955ab2d8c06024171/.command.out: Copied (new)
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2026/06/04 17:54:26 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3b/16cbdba1640d15c313f656126d9065/.command.run: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/34/bf1fe5064756e68064c3d67e8310d6/.command.run: Copied (new)
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2026/06/04 17:54:26 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/34/f21c6f76a0fc4788e0d02e46d5a0e2/.command.out: Copied (new)
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2026/06/04 17:54:26 INFO  : Logs_Intermediates/nextflow_work_logs/53/1ad70ed1b6eecf8b370f98a96daa0c/.command.run: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/f7/41ffe73d365c7d38438504866651fd/.exitcode: Copied (new)
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2026/06/04 17:54:26 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3c/29390d3cd5b69f5f5bc8b3e445e8ce/.command.out: Copied (new)
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2026/06/04 17:54:26 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/cd/94ac94eaca899fed3fb099e5106d65/SampleAnalysisResults/659_dtd-T1-TDNA-1_HLNLMDRX7_1_SARJeantLog-20260603230818.log: Copied (new)
2026/06/04 17:54:26 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/c2/149970696816ec49814a0ccada887a/.command.env: Copied (new)
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2026/06/04 17:54:26 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3b/dc1889c7028fb2e0062828b994cb6b/.command.log: Copied (new)
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2026/06/04 17:54:26 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/34/bf1fe5064756e68064c3d67e8310d6/.command.sh: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3d/d376705b7e9aeab9c51b74eefe9e57/.command.log: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3b/16cbdba1640d15c313f656126d9065/.command.sh: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/ba/436edc4005531b0ef9c45affbf0513/.exitcode: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/ba/436edc4005531b0ef9c45affbf0513/.command.trace: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3d/d376705b7e9aeab9c51b74eefe9e57/.command.out: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3d/f427583b4a75cdf56ead78a635a1ca/.command.err: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3e/209ac797e7ddc3ad32c0f2072f2ead/.command.err: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/b5/90537a29cb6477dd46ace5f0ec91f1/.command.sh: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3e/209ac797e7ddc3ad32c0f2072f2ead/.command.log: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3b/dc1889c7028fb2e0062828b994cb6b/.command.sh: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3e/d6bdd0981747bd648fae989379d7d9/.command.err: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3d/f427583b4a75cdf56ead78a635a1ca/.command.log: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/d2/f67d63735360971468e569a32fec63/.command.err: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/ce/007c0c9a549bc955ab2d8c06024171/.command.trace: Copied (new)
2026/06/04 17:54:27 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/d5/5284b728a4cc07d098eb99ea2f71fb/.command.run: Copied (new)
2026/06/04 17:54:27 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/c1/5db9fc49e960bca57cd3bd29b002a7/Gis/dragen_syslog_1780523191574_214886.log: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/c1/d95dd4b8d0026fe67f7011459e4099/.exitcode: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/ca/79829b5139569fff9970ae680b8f11/.command.sh: Copied (new)
2026/06/04 17:54:27 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/c3/b69eb7baab155049dd2c69d3746bad/.command.err: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3e/209ac797e7ddc3ad32c0f2072f2ead/.command.out: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/d0/bbeb8bae870502cfe65b6bb4465134/.command.trace: Copied (new)
2026/06/04 17:54:27 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/ff/84a17a2b568ff0e207d64ecb435317/.exitcode: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3d/f427583b4a75cdf56ead78a635a1ca/.command.out: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/ce/007c0c9a549bc955ab2d8c06024171/.exitcode: Copied (new)
2026/06/04 17:54:27 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/b5/90537a29cb6477dd46ace5f0ec91f1/.exitcode: Copied (new)
2026/06/04 17:54:27 INFO  : ica_logs/work/67/bf96a8287f45ba4e1354b379a13863/work/f7/51c9eda6406a22dec1c8ef5dd22e21/.exitcode: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/ce/0c764ae68ef2798e752829b5259a9e/.command.err: Copied (new)
2026/06/04 17:54:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3e/d6bdd0981747bd648fae989379d7d9/.command.log: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3f/8d10ec25b78fe2fd28ebcff7b9e611/.command.env: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/d2/5a2e6f16bd76be760fc246435e8e71/.command.trace: Copied (new)
2026/06/04 17:54:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3e/f4f7ad0d18050f26a5150863172081/.command.err: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/c4/c432554e73a4d3de2bc148020ffb86/.command.begin: Copied (new)
2026/06/04 17:54:27 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/b9/1e59f69221d1e9a870ad657ee22f9e/.exitcode: Copied (new)
2026/06/04 17:54:27 INFO  : Logs_Intermediates/nextflow_work_logs/57/e9582c56e50d03b57057951f40d66f/.command.run: Copied (new)
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2026/06/04 17:54:27 INFO  : Logs_Intermediates/nextflow_work_logs/58/14f369040b0f776bd55236c5472b56/.command.log: Copied (new)
2026/06/04 17:54:27 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/cf/bd32c4119e22e4607909af527cc6f9/gen_coverage_reports.log: Copied (new)
2026/06/04 17:54:27 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/ce/26e47cc057bf8beb6763fc0f08edc8/.command.begin: Copied (new)
2026/06/04 17:54:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3f/8d10ec25b78fe2fd28ebcff7b9e611/.command.err: Copied (new)
2026/06/04 17:54:27 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/d0/bbeb8bae870502cfe65b6bb4465134/.exitcode: Copied (new)
2026/06/04 17:54:27 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/da/9b7cca7254352c1a24994c57ce8304/.command.out: Copied (new)
2026/06/04 17:54:27 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/ca/79829b5139569fff9970ae680b8f11/.command.trace: Copied (new)
2026/06/04 17:54:27 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/dc/5b20820c712a27177227f8cdb2d56b/.command.err: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/cb/2fdf4f262149976dd2d537508816b6/.command.out: Copied (new)
2026/06/04 17:54:27 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/b5/90537a29cb6477dd46ace5f0ec91f1/Nirvana-20260603223023.log: Copied (new)
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2026/06/04 17:54:27 INFO  : Logs_Intermediates/nextflow_work_logs/5b/cddd50f1e43eec23858881e7a88fa3/.command.err: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/d2/f67d63735360971468e569a32fec63/.command.out: Copied (new)
2026/06/04 17:54:27 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/d1/3dbc6051ec20b01dcb121ea3936653/.command.trace: Copied (new)
2026/06/04 17:54:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3d/f427583b4a75cdf56ead78a635a1ca/.command.run: Copied (new)
2026/06/04 17:54:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3e/d6bdd0981747bd648fae989379d7d9/.command.out: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/bc/3f962b635f4033ca52837fdcf96d67/.command.trace: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3e/209ac797e7ddc3ad32c0f2072f2ead/.command.run: Copied (new)
2026/06/04 17:54:27 INFO  : Logs_Intermediates/nextflow_work_logs/58/14f369040b0f776bd55236c5472b56/.command.out: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3e/f4f7ad0d18050f26a5150863172081/.command.log: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/d1/3dbc6051ec20b01dcb121ea3936653/.exitcode: Copied (new)
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2026/06/04 17:54:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3f/c1aeb523163d6b044dc26902061aa9/.command.err: Copied (new)
2026/06/04 17:54:27 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3f/8d10ec25b78fe2fd28ebcff7b9e611/.command.log: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/40/38234cdb0825a424efa17a4c8d6ed9/.command.err: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3e/209ac797e7ddc3ad32c0f2072f2ead/.command.sh: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3e/fd434b9952e26a588fd85c227fb151/.command.err: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/d5/5284b728a4cc07d098eb99ea2f71fb/.exitcode: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3e/f4f7ad0d18050f26a5150863172081/.command.out: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3d/f427583b4a75cdf56ead78a635a1ca/.command.sh: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/df/01872d76f2a5dae739833794ac6b36/.command.err: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3f/c1aeb523163d6b044dc26902061aa9/.command.log: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/d2/f67d63735360971468e569a32fec63/.command.sh: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3f/8d10ec25b78fe2fd28ebcff7b9e611/.command.out: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3e/fd434b9952e26a588fd85c227fb151/.command.log: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3e/d6bdd0981747bd648fae989379d7d9/.command.sh: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/df/d7023fa7390304919df5e6849bcf36/.command.begin: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/41/846aa907228e90ce6b4cb13ac5194e/.command.err: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3e/f4f7ad0d18050f26a5150863172081/.command.run: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/ce/26e47cc057bf8beb6763fc0f08edc8/.command.out: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/cb/2fdf4f262149976dd2d537508816b6/.command.trace: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/c2/149970696816ec49814a0ccada887a/.exitcode: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/e3/c82303d01ca892ece02f84f41d5213/.command.begin: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/db/ba638fb8406d036ef482d795fd7adc/.command.log: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/df/01872d76f2a5dae739833794ac6b36/.command.log: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/c3/b69eb7baab155049dd2c69d3746bad/.command.sh: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3f/c1aeb523163d6b044dc26902061aa9/.command.out: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/da/9b7cca7254352c1a24994c57ce8304/.command.trace: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3e/fd434b9952e26a588fd85c227fb151/.command.out: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/d2/f67d63735360971468e569a32fec63/.command.trace: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/40/38234cdb0825a424efa17a4c8d6ed9/.command.out: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/db/ba638fb8406d036ef482d795fd7adc/.command.run: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3f/8d10ec25b78fe2fd28ebcff7b9e611/.command.run: Copied (new)
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2026/06/04 17:54:28 INFO  : Logs_Intermediates/nextflow_work_logs/5b/cddd50f1e43eec23858881e7a88fa3/.command.run: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3f/c1aeb523163d6b044dc26902061aa9/.command.run: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/41/846aa907228e90ce6b4cb13ac5194e/.command.log: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/40/455628fe8c33e94bdac9eb4972b9c6/.command.err: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3e/f4f7ad0d18050f26a5150863172081/.command.sh: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3f/8d10ec25b78fe2fd28ebcff7b9e611/.command.sh: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3e/fd434b9952e26a588fd85c227fb151/.command.run: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/d2/f67d63735360971468e569a32fec63/.exitcode: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/40/38234cdb0825a424efa17a4c8d6ed9/.command.run: Copied (new)
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2026/06/04 17:54:28 INFO  : Logs_Intermediates/nextflow_work_logs/5d/4cebe7a7ff8dbe8444830f81c3b2b2/.command.err: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/ce/0c764ae68ef2798e752829b5259a9e/.command.trace: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/41/846aa907228e90ce6b4cb13ac5194e/.command.out: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/40/455628fe8c33e94bdac9eb4972b9c6/.command.log: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/ce/26e47cc057bf8beb6763fc0f08edc8/.command.sh: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3f/c1aeb523163d6b044dc26902061aa9/.command.sh: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/c3/b69eb7baab155049dd2c69d3746bad/.exitcode: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/dc/5b20820c712a27177227f8cdb2d56b/.command.trace: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/c6/62c057c7455206c4caf642274b86c2/.command.out: Copied (new)
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2026/06/04 17:54:28 INFO  : Logs_Intermediates/nextflow_work_logs/5c/b10741a58e134a53f89420c5a3e119/.command.err: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/40/38234cdb0825a424efa17a4c8d6ed9/.command.sh: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/d0/b642925dffa7ba35be3f650e3ce4fa/.command.out: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/c9/0993132652bc8519ed27cca2498e7d/.command.err: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/df/d7023fa7390304919df5e6849bcf36/.command.out: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/e3/c82303d01ca892ece02f84f41d5213/.command.log: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/ce/0c764ae68ef2798e752829b5259a9e/.exitcode: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/42/4de13b683fd528868cfca178adfe6e/.command.err: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/3e/fd434b9952e26a588fd85c227fb151/.command.sh: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/cf/871c1fa8f4b2a3bcade8cc74fca620/.command.sh: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/e8/48aaef292ca89b9fdc1e598c066fff/.command.begin: Copied (new)
2026/06/04 17:54:28 INFO  : Logs_Intermediates/nextflow_work_logs/5c/610d52e4d8bba11ec575d0e827d69f/.command.run: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/e1/a5134f70d77dda2ea1c41993b834f0/.command.err: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/dc/5b20820c712a27177227f8cdb2d56b/.exitcode: Copied (new)
2026/06/04 17:54:28 INFO  : Logs_Intermediates/nextflow_work_logs/5d/4cebe7a7ff8dbe8444830f81c3b2b2/.command.log: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/ce/6b498e965275c5983b7557dc47ee05/.command.run: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/df/ff6f5714c9c47b7303cba52c96145b/.command.begin: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/c4/c432554e73a4d3de2bc148020ffb86/.command.trace: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/41/846aa907228e90ce6b4cb13ac5194e/.command.run: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/db/ba638fb8406d036ef482d795fd7adc/.command.trace: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/e1/7d004a42df9b754b78e734f9a12bbf/.command.run: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/40/455628fe8c33e94bdac9eb4972b9c6/.command.out: Copied (new)
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2026/06/04 17:54:28 INFO  : Logs_Intermediates/nextflow_work_logs/58/9f5283acd6ab0617cddbaafe31689d/.command.sh: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/c9/0993132652bc8519ed27cca2498e7d/.command.log: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/41/f53f74e68b94fc970190445919f9b7/.command.err: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/dc/101788ab88dac0b2ead4ffcb92e144/.command.err: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/c3/b69eb7baab155049dd2c69d3746bad/Nirvana-20260603204814.log: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/db/ba638fb8406d036ef482d795fd7adc/.exitcode: Copied (new)
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2026/06/04 17:54:28 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/e3/c82303d01ca892ece02f84f41d5213/.command.out: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/d0/b642925dffa7ba35be3f650e3ce4fa/.command.run: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/c6/62c057c7455206c4caf642274b86c2/.command.run: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/e3/d350858784f1fed5d93129bd2a487f/.command.out: Copied (new)
2026/06/04 17:54:28 INFO  : Logs_Intermediates/nextflow_work_logs/5c/b10741a58e134a53f89420c5a3e119/.command.log: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/c1/d95dd4b8d0026fe67f7011459e4099/Gis/dragen_run_1780524508948_258036.log: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/e8/48aaef292ca89b9fdc1e598c066fff/.command.err: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/42/4de13b683fd528868cfca178adfe6e/.command.log: Copied (new)
2026/06/04 17:54:28 INFO  : Logs_Intermediates/nextflow_work_logs/5e/1b1804c829ec63aedfed0061cd8960/.command.err: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/e1/7d004a42df9b754b78e734f9a12bbf/.command.sh: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/e4/4649d9d5534670592f4cb7780defd7/.command.err: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/ce/6b498e965275c5983b7557dc47ee05/.command.sh: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/c4/c432554e73a4d3de2bc148020ffb86/.exitcode: Copied (new)
2026/06/04 17:54:28 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/e1/a5134f70d77dda2ea1c41993b834f0/.command.log: Copied (new)
2026/06/04 17:54:28 INFO  : Logs_Intermediates/nextflow_work_logs/5d/4cebe7a7ff8dbe8444830f81c3b2b2/.command.out: Copied (new)
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2026/06/04 17:54:29 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/ce/0c764ae68ef2798e752829b5259a9e/Nirvana-20260603211231.log: Copied (new)
2026/06/04 17:54:29 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/df/d7023fa7390304919df5e6849bcf36/.command.run: Copied (new)
2026/06/04 17:54:29 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/ce/26e47cc057bf8beb6763fc0f08edc8/.exitcode: Copied (new)
2026/06/04 17:54:29 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/40/5a56ade8af03a53c0637934607c1c7/.command.err: Copied (new)
2026/06/04 17:54:29 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/df/ff6f5714c9c47b7303cba52c96145b/.command.err: Copied (new)
2026/06/04 17:54:29 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/de/06b7cfa8d35f43c29dd35e304c204e/.command.begin: Copied (new)
2026/06/04 17:54:29 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/41/846aa907228e90ce6b4cb13ac5194e/.command.sh: Copied (new)
2026/06/04 17:54:29 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/40/455628fe8c33e94bdac9eb4972b9c6/.command.run: Copied (new)
2026/06/04 17:54:29 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/c6/62c057c7455206c4caf642274b86c2/.command.sh: Copied (new)
2026/06/04 17:54:29 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/df/01872d76f2a5dae739833794ac6b36/.command.trace: Copied (new)
2026/06/04 17:54:29 INFO  : ica_logs/work/11/0f649f5211a779a565ac3525ba0fce/work/cc/f61ff1c76c654ce1ccf7d734a141b8/.command.err: Copied (new)
2026/06/04 17:54:29 INFO  : ica_logs/work/f9/f8f981497ca4fad84fd8271c6a6ad3/work/e6/0ba421041327a4901160273a09c8f7/.command.begin: Copied (new)
2026/06/04 17:54:29 INFO  : Logs_Intermediates/nextflow_work_logs/5d/d3a638cf9961ab83985b85e57ee000/.command.err: Copied (new)
2026/06/04 17:54:29 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/42/4de13b683fd528868cfca178adfe6e/.command.out: Copied (new)
2026/06/04 17:54:29 INFO  : ica_logs/work/c7/82c9c10a0b4c6fb2a60f4f2835e2cb/work/e3/c82303d01ca892ece02f84f41d5213/.command.run: Copied (new)
2026/06/04 17:54:29 INFO  : ica_logs/work/c9/18d5fc20d97f6f04b0b6b0eb90bc2c/work/cf/871c1fa8f4b2a3bcade8cc74fca620/.exitcode: Copied (new)
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2026/06/04 17:54:29 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/43/03b30ffbe9dd7c4eb8dc1ded2cfee5/.command.err: Copied (new)
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2026/06/04 17:54:29 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/40/79e72246cc185efaeeb597dbfffc0f/.command.err: Copied (new)
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2026/06/04 17:54:32 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/4c/7950a6fe78c71ec045906158fec85c/.command.err: Copied (new)
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2026/06/04 17:54:43 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/fa/a4e0b6a88d0366c07d779fbb017182/.command.sh: Copied (new)
2026/06/04 17:54:43 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/fd/442ab3faefd1f7f7ade84be0208d26/.command.sh: Copied (new)
2026/06/04 17:54:43 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/fc/24b0eebf272d8cd6b42676051ea8bf/.command.sh: Copied (new)
2026/06/04 17:54:43 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/fc/18ad1326e414cf7e75e22ac1dd0744/.command.run: Copied (new)
2026/06/04 17:54:43 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/fc/d51cbdc5d6434bdc7fad99d2d62f61/.command.sh: Copied (new)
2026/06/04 17:54:43 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/fc/d51cbdc5d6434bdc7fad99d2d62f61/.command.run: Copied (new)
2026/06/04 17:54:43 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/ff/846af30b18366575e6786895219b91/.command.sh: Copied (new)
2026/06/04 17:54:43 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/ff/5545b1b2bbdf5430e5a002d709495e/.command.log: Copied (new)
2026/06/04 17:54:43 INFO  : ica_logs/out/Logs_Intermediates/nextflow_work_logs/fb/993d2702cd11714ba3ec276f424dc2/.command.sh: Copied (new)
2026/06/04 17:54:47 INFO  : Logs_Intermediates/FastqGeneration/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna_S16_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:54:50 INFO  : Logs_Intermediates/DnaDragenCaller/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna/659_cqB-T1-TDNA-1_HLNLMDRX7_1_dna.bam: Multi-thread Copied (new)
2026/06/04 17:54:51 INFO  : Logs_Intermediates/DnaDragenCaller/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dtd-T1-TDNA-1_HLNLMDRX7_1_dna.bam: Multi-thread Copied (new)
2026/06/04 17:54:52 INFO  : 
Transferred:   	  388.971 GiB / 409.914 GiB, 95%, 1020.796 MiB/s, ETA 21s
Transferred:        14701 / 14718, 100%
Elapsed time:       5m0.0s
Transferring:
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 95% /4.893Gi, 44.364Mi/s, 5s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 95% /5.032Gi, 45.916Mi/s, 4s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 94% /5.053Gi, 41.372Mi/s, 6s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 87% /5.199Gi, 48.204Mi/s, 13s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 72% /5.390Gi, 47.283Mi/s, 32s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 85% /4.435Gi, 40.096Mi/s, 16s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 74% /4.442Gi, 47.641Mi/s, 24s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 59% /5.006Gi, 41.274Mi/s, 49s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 55% /5.054Gi, 37.527Mi/s, 1m2s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 52% /5.102Gi, 44.820Mi/s, 55s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 51% /4.676Gi, 37.596Mi/s, 1m1s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 54% /4.475Gi, 43.778Mi/s, 47s
 * Logs_Intermediates/Fas…0_L001_R1_001.fastq.gz: 75% /3.196Gi, 42.946Mi/s, 18s
 * Logs_Intermediates/Fas…0_L001_R2_001.fastq.gz: 79% /3.194Gi, 44.366Mi/s, 15s
 * Logs_Intermediates/Fas…0_L002_R1_001.fastq.gz: 79% /3.209Gi, 42.049Mi/s, 15s
 * Logs_Intermediates/Fas…0_L002_R2_001.fastq.gz: 76% /3.216Gi, 45.227Mi/s, 16s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 50% /4.982Gi, 46.678Mi/s, 53s

2026/06/04 17:54:56 INFO  : Logs_Intermediates/DnaDragenCaller/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna/659_dH2-T1-TDNA-1_HLNLMDRX7_1_dna.bam: Multi-thread Copied (new)
2026/06/04 17:55:00 INFO  : Logs_Intermediates/DnaDragenCaller/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna/659_ciq-T1-TDNA-1_HLNLMDRX7_1_dna.bam: Multi-thread Copied (new)
2026/06/04 17:55:00 INFO  : Logs_Intermediates/DnaDragenCaller/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna/659_dZX-T1-TDNA-1_HLNLMDRX7_1_dna.bam: Multi-thread Copied (new)
2026/06/04 17:55:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna/659_dot-T1-TDNA-1_HLNLMDRX7_1_dna.bam: Multi-thread Copied (new)
2026/06/04 17:55:04 INFO  : Logs_Intermediates/DnaDragenCaller/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna/659_dyd-T1-TDNA-1_HLNLMDRX7_1_dna.bam: Multi-thread Copied (new)
2026/06/04 17:55:04 INFO  : Logs_Intermediates/FastqGeneration/Undetermined/Undetermined_S0_L001_R2_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:55:05 INFO  : Logs_Intermediates/FastqGeneration/Undetermined/Undetermined_S0_L002_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:55:07 INFO  : Logs_Intermediates/FastqGeneration/Undetermined/Undetermined_S0_L002_R2_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:55:08 INFO  : Logs_Intermediates/FastqGeneration/Undetermined/Undetermined_S0_L001_R1_001.fastq.gz: Multi-thread Copied (new)
2026/06/04 17:55:17 INFO  : Logs_Intermediates/DnaDragenCaller/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna/659_eJY-T1-TDNA-1_HLNLMDRX7_1_dna.bam: Multi-thread Copied (new)
2026/06/04 17:55:21 INFO  : Logs_Intermediates/DnaDragenCaller/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna/659_du4-T1-TDNA-1_HLNLMDRX7_1_dna.bam: Multi-thread Copied (new)
2026/06/04 17:55:22 INFO  : 
Transferred:   	  405.291 GiB / 409.914 GiB, 99%, 564.440 MiB/s, ETA 8s
Transferred:        14712 / 14718, 100%
Elapsed time:      5m30.0s
Transferring:
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 89% /5.006Gi, 46.839Mi/s, 11s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 86% /5.054Gi, 49.612Mi/s, 14s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 80% /5.102Gi, 50.117Mi/s, 19s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 81% /4.676Gi, 46.947Mi/s, 18s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 87% /4.475Gi, 51.904Mi/s, 10s
 * Logs_Intermediates/Dna…-1_HLNLMDRX7_1_dna.bam: 79% /4.982Gi, 47.989Mi/s, 22s

2026/06/04 17:55:32 INFO  : Logs_Intermediates/DnaDragenCaller/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna/659_ez6-T1-TDNA-1_HLNLMDRX7_1_dna.bam: Multi-thread Copied (new)
2026/06/04 17:55:32 INFO  : Logs_Intermediates/DnaDragenCaller/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna/659_eMB-T1-TDNA-1_HLNLMDRX7_1_dna.bam: Multi-thread Copied (new)
2026/06/04 17:55:36 INFO  : Logs_Intermediates/DnaDragenCaller/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna/659_egs-T1-TDNA-1_HLNLMDRX7_1_dna.bam: Multi-thread Copied (new)
2026/06/04 17:55:38 INFO  : Logs_Intermediates/DnaDragenCaller/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna/659_ev0-T1-TDNA-1_HLNLMDRX7_1_dna.bam: Multi-thread Copied (new)
2026/06/04 17:55:41 INFO  : Logs_Intermediates/DnaDragenCaller/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna/659_qZ-T1-TDNA-1_HLNLMDRX7_1_dna.bam: Multi-thread Copied (new)
2026/06/04 17:55:42 INFO  : Logs_Intermediates/DnaDragenCaller/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna/659_eu0-T1-TDNA-1_HLNLMDRX7_1_dna.bam: Multi-thread Copied (new)
2026/06/04 17:55:42 INFO  : 
Transferred:   	  409.914 GiB / 409.914 GiB, 100%, 297.619 MiB/s, ETA 0s
Transferred:        14718 / 14718, 100%
Elapsed time:      5m50.4s