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rna_s1811.FusionInspector.fusions.abridged.tsv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_rna_exp0032/A2327GFLT3/nfcore_rnafusion__2cae617--20260515-145204/fusioninspector/rna_s1811.FusionInspector.fusions.abridged.tsv
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25.3 KB
Workflow Run
cgp_rna_exp0032_2cae617
Published
May 16, 2026 6:32 AM

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#FusionName JunctionReadCount SpanningFragCount est_J est_S LeftGene LeftLocalBreakpoint LeftBreakpoint RightGene RightLocalBreakpoint RightBreakpoint SpliceType LargeAnchorSupport NumCounterFusionLeft NumCounterFusionRight FAR_left FAR_right LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy FFPM microh_brkpt_dist num_microh_near_brkpt
TMPRSS2--ERG 201 21 201.00 14.76 TMPRSS2^ENSG00000184012.14 10965 chr21:41488394:- ERG^ENSG00000157554.19 36539 chr21:38445621:- ONLY_REF_SPLICE YES 3 23 55.75 9.29 GT 1.8892 AG 1.9656 0.7449 5157 0
TMPRSS2--ERG 138 1 138.00 0.25 TMPRSS2^ENSG00000184012.14 7359 chr21:41498119:- ERG^ENSG00000157554.19 36539 chr21:38445621:- ONLY_REF_SPLICE YES 76 23 1.82 5.83 GT 1.9656 AG 1.9656 0.4773 2413 0
TMPRSS2--ERG 113 0 113.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 39981 chr21:38402637:- ONLY_REF_SPLICE YES 63 455 1.78 0.25 GT 1.6895 AG 1.4295 0.3901 1435 0
TMPRSS2--ERG 101 18 101.00 5.82 TMPRSS2^ENSG00000184012.14 8765 chr21:41494356:- ERG^ENSG00000157554.19 38909 chr21:38403709:- ONLY_REF_SPLICE YES 57 260 2.07 0.46 GT 1.9656 AG 1.9899 0.3688 3038 0
TMPRSS2--ERG 102 0 102.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 37757 chr21:38423561:- ONLY_REF_SPLICE YES 63 240 1.61 0.43 GT 1.6895 AG 1.9899 0.3521 1057 0
TMPRSS2--ERG 89 1 89.00 0.16 TMPRSS2^ENSG00000184012.14 7359 chr21:41498119:- ERG^ENSG00000157554.19 38909 chr21:38403709:- ONLY_REF_SPLICE YES 76 260 1.18 0.35 GT 1.9656 AG 1.9899 0.3079 1634 0
TMPRSS2--ERG 76 0 76.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 38909 chr21:38403709:- ONLY_REF_SPLICE YES 63 260 1.20 0.30 GT 1.6895 AG 1.9899 0.2624 1071 0
TMPRSS2--ERG 63 0 63.00 0.00 TMPRSS2^ENSG00000184012.14 7359 chr21:41498119:- ERG^ENSG00000157554.19 39981 chr21:38402637:- ONLY_REF_SPLICE YES 76 455 0.83 0.14 GT 1.9656 AG 1.4295 0.2175 1893 0
TMPRSS2--ERG 45 0 45.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 36539 chr21:38445621:- ONLY_REF_SPLICE YES 63 23 0.72 1.92 GT 1.6895 AG 1.9656 0.1554 350 0
EWSR1--ERG 172 9 172.00 6.02 EWSR1^ENSG00000182944.18 11554 chr22:29287134:+ ERG^ENSG00000157554.19 44967 chr21:38383923:- ONLY_REF_SPLICE YES 2368 355 0.08 0.51 GT 1.8062 AG 1.9086 0.6146 1191 0
EWSR1--ERG 84 10 84.00 3.98 EWSR1^ENSG00000182944.18 11554 chr22:29287134:+ ERG^ENSG00000157554.19 43919 chr21:38391042:- ONLY_REF_SPLICE YES 2368 368 0.04 0.26 GT 1.8062 AG 1.8062 0.3037 1677 0
KIAA1549--BRAF 159 51 159.00 21.92 KIAA1549^ENSG00000122778.10 24718 chr7:138840133:- BRAF^ENSG00000157764.14 50867 chr7:140787584:- ONLY_REF_SPLICE YES 99 1227 2.11 0.17 GT 1.4566 AG 1.9329 0.6246 2455 0
KIAA1549--BRAF 147 45 147.00 14.18 KIAA1549^ENSG00000122778.10 21367 chr7:138861139:- BRAF^ENSG00000157764.14 50867 chr7:140787584:- ONLY_REF_SPLICE YES 236 1227 0.81 0.16 GT 1.9086 AG 1.9329 0.5565 1130 0
KIAA1549--BRAF 132 27 132.00 5.62 KIAA1549^ENSG00000122778.10 20049 chr7:138867975:- BRAF^ENSG00000157764.14 50867 chr7:140787584:- ONLY_REF_SPLICE YES 353 1227 0.45 0.13 GT 1.9656 AG 1.9329 0.4751 1530 0
KIAA1549--BRAF 114 24 114.00 4.16 KIAA1549^ENSG00000122778.10 18895 chr7:138869538:- BRAF^ENSG00000157764.14 50867 chr7:140787584:- ONLY_REF_SPLICE YES 441 1227 0.31 0.11 GT 1.5219 AG 1.9329 0.408 2474 0
KIAA1549--BRAF 117 10 117.00 1.62 KIAA1549^ENSG00000122778.10 14152 chr7:138894342:- BRAF^ENSG00000157764.14 50867 chr7:140787584:- ONLY_REF_SPLICE YES 238 1227 0.54 0.10 GT 1.8256 AG 1.9329 0.4095 96 1
KIAA1549--BRAF 106 5 106.00 0.65 KIAA1549^ENSG00000122778.10 17671 chr7:138871157:- BRAF^ENSG00000157764.14 53331 chr7:140783157:- ONLY_REF_SPLICE YES 315 1619 0.35 0.07 GT 1.4256 AG 1.9656 0.3682 2412 0
KIAA1549--BRAF 86 17 86.00 2.84 KIAA1549^ENSG00000122778.10 21367 chr7:138861139:- BRAF^ENSG00000157764.14 53331 chr7:140783157:- ONLY_REF_SPLICE YES 236 1619 0.44 0.06 GT 1.9086 AG 1.9656 0.3067 3575 0
EML4--ALK 167 11 167.00 4.13 EML4^ENSG00000143924.19 20963 chr2:42304551:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 1742 26 0.10 6.63 GT 1.8256 AG 1.9086 0.5909 2703 0
EML4--ALK 128 7 128.00 1.25 EML4^ENSG00000143924.19 18552 chr2:42301392:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 790 26 0.17 5.04 GT 1.2310 AG 1.9086 0.4462 1107 0
EML4--ALK 123 7 123.00 1.21 EML4^ENSG00000143924.19 8300 chr2:42264731:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 546 26 0.24 4.85 GT 1.7819 AG 1.9086 0.4289 1031 0
EML4--ALK 119 7 119.00 1.17 EML4^ENSG00000143924.19 3621 chr2:42245687:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 2007 26 0.06 4.70 GT 1.9219 AG 1.9086 0.4148 216 0
EML4--ALK 85 13 85.00 3.81 EML4^ENSG00000143924.19 25702 chr2:42325554:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 1107 26 0.09 3.67 GT 1.7056 AG 1.9086 0.3067 1160 0
EML4--ALK 69 7 69.00 0.68 EML4^ENSG00000143924.19 17400 chr2:42295516:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 649 26 0.12 2.85 GT 1.6895 AG 1.9086 0.2405 1550 0
EML4--ALK 17 13 17.00 0.76 EML4^ENSG00000143924.19 25702 chr2:42325554:+ ALK^ENSG00000171094.18 34064 chr2:29921586:- ONLY_REF_SPLICE YES 1107 0 0.03 31.00 GT 1.7056 GC 1.9329 0.0613 667 0
FBXO25--AC240565.1 162 0 162.00 0.00 FBXO25^ENSG00000147364.17 7247 chr8:435707:+ AC240565.1^ENSG00000280136.2 27298 chr17:106864:- ONLY_REF_SPLICE YES 237 47 0.68 3.40 GT 1.7819 AG 1.8892 0.5593 7162 0
SND1--BRAF 146 10 146.00 10.00 SND1^ENSG00000197157.11 24964 chr7:127991056:+ BRAF^ENSG00000157764.14 55981 chr7:140787584:- ONLY_REF_SPLICE YES 2400 1228 0.07 0.13 GT 1.8295 AG 1.9329 0.5386 1527 0
FGFR3--TACC3 145 11 145.00 4.71 FGFR3^ENSG00000068078.20 11811 chr4:1808867:+ TACC3^ENSG00000013810.20 22437 chr4:1731172:+ ONLY_REF_SPLICE YES 6 1901 22.43 0.08 CC 1.9899 AG 1.9086 0.5169 1818 0
FGFR3--TACC3 98 14 98.00 6.28 FGFR3^ENSG00000068078.20 11812 chr4:1808868:+ TACC3^ENSG00000013810.20 19989 chr4:1727709:+ INCL_NON_REF_SPLICE YES 5 1236 18.83 0.09 CT 1.9656 GC 1.8323 0.36 272 0
FGFR3--TACC3 67 5 67.00 0.78 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 24025 chr4:1735731:+ ONLY_REF_SPLICE YES 24 1387 2.92 0.05 GT 1.8892 AG 1.9656 0.234 1548 0
FGFR3--TACC3 67 4 67.00 0.60 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 25486 chr4:1737598:+ ONLY_REF_SPLICE YES 24 1245 2.88 0.06 GT 1.8892 AG 1.6402 0.2334 91 1
FGFR3--TACC3 57 10 57.00 1.61 FGFR3^ENSG00000068078.20 11811 chr4:1808867:+ TACC3^ENSG00000013810.20 23567 chr4:1735273:+ ONLY_REF_SPLICE YES 6 1514 9.71 0.04 CC 1.9899 AG 1.8892 0.2024 2289 0
TRIM33--RET 135 4 135.00 4.00 TRIM33^ENSG00000197323.12 15635 chr1:114406941:- RET^ENSG00000165731.20 43081 chr10:43116584:+ ONLY_REF_SPLICE YES 701 13 0.20 10.00 GT 1.8892 AG 1.8323 0.4799 1717 0
BRD4--NUTM1 125 5 125.00 5.00 BRD4^ENSG00000141867.19 17859 chr19:15254152:- NUTM1^ENSG00000184507.16 36973 chr15:34347969:+ ONLY_REF_SPLICE YES 2568 11 0.05 10.92 GT 1.7465 AG 1.9329 0.4489 762 0
TRIM24--BRAF 119 26 119.00 17.24 TRIM24^ENSG00000122779.18 14326 chr7:138567654:+ BRAF^ENSG00000157764.14 47905 chr7:140787584:- ONLY_REF_SPLICE YES 454 1227 0.32 0.12 GT 1.6402 AG 1.9329 0.4703 1536 0
TRIM24--BRAF 92 6 92.00 1.87 TRIM24^ENSG00000122779.18 10753 chr7:138551180:+ BRAF^ENSG00000157764.14 50369 chr7:140783157:- ONLY_REF_SPLICE YES 708 1617 0.14 0.06 GT 1.7819 AG 1.9656 0.3241 1323 0
TRIM24--BRAF 64 22 64.00 6.89 TRIM24^ENSG00000122779.18 12022 chr7:138554966:+ BRAF^ENSG00000157764.14 47905 chr7:140787584:- ONLY_REF_SPLICE YES 555 1227 0.16 0.07 GT 1.7819 AG 1.9329 0.2448 1733 0
PML--RARA 117 17 117.00 12.15 PML^ENSG00000140464.20 12045 chr15:74034530:+ RARA^ENSG00000131759.18 33708 chr17:40348316:+ ONLY_REF_SPLICE YES 2598 1118 0.05 0.12 GT 1.9329 AG 1.9086 0.4458 183 0
PML--RARA 117 10 117.00 4.85 PML^ENSG00000140464.20 10929 chr15:74033414:+ RARA^ENSG00000131759.18 33708 chr17:40348316:+ ONLY_REF_SPLICE YES 2188 1118 0.06 0.11 GT 1.3383 AG 1.9086 0.4206 1296 0
FGFR2--TACC3 115 9 115.00 8.62 FGFR2^ENSG00000066468.23 29010 chr10:121483698:- TACC3^ENSG00000013810.20 41679 chr4:1727708:+ ONLY_REF_SPLICE YES 17 1192 6.94 0.10 GT 1.8323 AG 1.7056 0.4268 1192 0
FGFR2--TACC3 45 1 45.00 0.23 FGFR2^ENSG00000066468.23 29010 chr10:121483698:- TACC3^ENSG00000013810.20 47177 chr4:1737598:+ ONLY_REF_SPLICE YES 17 1244 2.61 0.04 GT 1.8323 AG 1.6402 0.1562 1795 0
FGFR2--TACC3 30 1 30.00 0.15 FGFR2^ENSG00000066468.23 29010 chr10:121483698:- TACC3^ENSG00000013810.20 49281 chr4:1739702:+ ONLY_REF_SPLICE YES 17 1641 1.78 0.02 GT 1.8323 AG 1.7819 0.1041 1188 0
TPM3--NTRK1 112 18 112.00 8.82 TPM3^ENSG00000143549.21 13389 chr1:154170400:- NTRK1^ENSG00000198400.13 41882 chr1:156874383:+ ONLY_REF_SPLICE YES 4277 7 0.03 16.38 GT 1.9329 AG 1.5058 0.4172 168 0
TPM3--NTRK1 89 15 89.00 4.81 TPM3^ENSG00000143549.21 13140 chr1:154170649:- NTRK1^ENSG00000198400.13 41882 chr1:156874383:+ ONLY_REF_SPLICE YES 5031 7 0.02 13.12 GT 1.7968 AG 1.5058 0.3239 276 0
TPM3--NTRK1 70 10 70.00 2.01 TPM3^ENSG00000143549.21 13140 chr1:154170649:- NTRK1^ENSG00000198400.13 42070 chr1:156874571:+ ONLY_REF_SPLICE YES 5031 29 0.02 2.70 GT 1.7968 AG 1.6895 0.2486 417 0
TPM3--NTRK1 69 11 69.00 2.36 TPM3^ENSG00000143549.21 13389 chr1:154170400:- NTRK1^ENSG00000198400.13 42070 chr1:156874571:+ ONLY_REF_SPLICE YES 4277 29 0.02 2.70 GT 1.9329 AG 1.6895 0.2463 355 0
NPM1--ALK 114 0 114.00 0.00 NPM1^ENSG00000181163.14 5684 chr5:171391799:+ ALK^ENSG00000171094.18 43573 chr2:29223528:- ONLY_REF_SPLICE YES 8172 26 0.01 4.26 GT 1.9656 AG 1.9086 0.3936 1186 0
NPM1--ALK 18 2 18.00 2.00 NPM1^ENSG00000181163.14 6701 chr5:171392816:+ ALK^ENSG00000171094.18 18634 chr2:29921586:- ONLY_REF_SPLICE YES 8263 0 0.00 21.00 GT 1.9329 GC 1.9329 0.069 33 1
AFAP1--NTRK2 103 17 103.00 17.00 AFAP1^ENSG00000196526.10 21829 chr4:7778762:- NTRK2^ENSG00000148053.17 46551 chr9:84751986:+ ONLY_REF_SPLICE YES 11 314 10.08 0.38 GT 1.8323 AG 1.7056 0.4143 1214 0
PRKAR1A--RET 107 0 107.00 0.00 PRKAR1A^ENSG00000108946.15 8644 chr17:68525912:+ RET^ENSG00000165731.20 32187 chr10:43116584:+ ONLY_REF_SPLICE YES 2374 14 0.05 7.20 GT 1.9219 AG 1.8323 0.3694 2585 0
CCDC6--RET 105 3 105.00 3.00 CCDC6^ENSG00000108091.11 1435 chr10:59906122:- RET^ENSG00000165731.20 31587 chr10:43116584:+ ONLY_REF_SPLICE YES 1263 13 0.09 7.79 GT 1.8892 AG 1.8323 0.3729 2092 0
NSD3--NUTM1 97 1 97.00 1.00 NSD3^ENSG00000147548.17 11443 chr8:38326730:- NUTM1^ENSG00000184507.16 43858 chr15:34347969:+ ONLY_REF_SPLICE YES 1309 11 0.08 8.25 GT 1.9656 AG 1.9329 0.3384 1178 0
FGFR2--BICC1 95 7 95.00 7.00 FGFR2^ENSG00000066468.23 29010 chr10:121483698:- BICC1^ENSG00000122870.12 40783 chr10:58702074:+ ONLY_REF_SPLICE YES 17 4 5.72 20.60 GT 1.8323 AG 1.7968 0.3522 1673 0
SDC4--ROS1 87 28 87.00 25.21 SDC4^ENSG00000124145.6 4485 chr20:45330366:- ROS1^ENSG00000047936.11 42328 chr6:117337340:- ONLY_REF_SPLICE YES 203 17 0.57 6.44 GT 1.7968 AG 1.7465 0.3874 1426 0
SDC4--ROS1 59 5 59.00 1.76 SDC4^ENSG00000124145.6 2239 chr20:45335782:- ROS1^ENSG00000047936.11 42328 chr6:117337340:- ONLY_REF_SPLICE YES 231 17 0.28 3.61 GT 1.8892 AG 1.7465 0.2098 2052 0
SDC4--ROS1 58 3 58.00 1.03 SDC4^ENSG00000124145.6 4485 chr20:45330366:- ROS1^ENSG00000047936.11 45524 chr6:117326414:- ONLY_REF_SPLICE YES 203 307 0.30 0.20 GT 1.7968 AG 1.7232 0.2038 1743 0
ETV6--ABL1 89 1 89.00 1.00 ETV6^ENSG00000139083.11 11237 chr12:11869969:+ ABL1^ENSG00000097007.19 25631 chr9:130854064:+ ONLY_REF_SPLICE YES 2023 519 0.04 0.17 GT 1.7819 AG 1.8892 0.3108 1152 0
BRD3--NUTM1 87 1 87.00 1.00 BRD3^ENSG00000169925.17 12605 chr9:134040034:- NUTM1^ENSG00000184507.16 28100 chr15:34353736:+ ONLY_REF_SPLICE YES 355 23 0.25 3.71 GT 1.5219 AG 1.7819 0.3039 1018 0
FGFR1--TACC1 78 15 78.00 15.00 FGFR1^ENSG00000077782.21 27563 chr8:38413918:- TACC1^ENSG00000147526.20 55170 chr8:38836162:+ ONLY_REF_SPLICE YES 1036 3356 0.09 0.03 GT 1.8892 AG 1.7465 0.3211 301 0
CLTC--ALK 81 2 81.00 1.76 CLTC^ENSG00000141367.12 31398 chr17:59690711:+ ALK^ENSG00000171094.18 63682 chr2:29223528:- ONLY_REF_SPLICE YES 2012 26 0.04 3.11 GT 1.8892 AG 1.9086 0.2857 738 0
CLTC--ALK 9 4 9.00 2.24 CLTC^ENSG00000141367.12 31398 chr17:59690711:+ ALK^ENSG00000171094.18 38743 chr2:29921586:- ONLY_REF_SPLICE YES 2012 0 0.01 14.00 GT 1.8892 GC 1.9329 0.0388 2756 0
COL1A1--PDGFB 80 2 80.00 2.00 COL1A1^ENSG00000108821.14 16097 chr17:50186317:- PDGFB^ENSG00000100311.17 25647 chr22:39235874:- ONLY_REF_SPLICE YES 73 14 1.12 5.53 GT 1.9899 AG 1.7968 0.2831 1271 0
FUS--ERG 80 1 80.00 1.00 FUS^ENSG00000089280.19 11302 chr16:31191609:+ ERG^ENSG00000157554.19 24350 chr21:38445617:- INCL_NON_REF_SPLICE YES 0 33 82.00 2.41 GT 1.1589 AG 1.9219 0.2797 3611 0
SLC34A2--ROS1 76 11 76.00 9.84 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 53638 chr6:117337340:- ONLY_REF_SPLICE YES 2 17 29.33 4.89 GT 1.8892 AG 1.7465 0.2964 2262 0
SLC34A2--ROS1 53 3 53.00 1.16 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 56834 chr6:117326414:- ONLY_REF_SPLICE YES 2 307 19.00 0.19 GT 1.8892 AG 1.7232 0.187 183 0
TPM3--ALK 76 3 76.00 2.59 TPM3^ENSG00000143549.21 13389 chr1:154170400:- ALK^ENSG00000171094.18 54468 chr2:29223528:- ONLY_REF_SPLICE YES 4280 26 0.02 2.96 GT 1.9329 AG 1.9086 0.2713 949 0
TPM3--ALK 11 4 11.00 1.41 TPM3^ENSG00000143549.21 13389 chr1:154170400:- ALK^ENSG00000171094.18 29529 chr2:29921586:- ONLY_REF_SPLICE YES 4280 0 0.00 16.00 GT 1.9329 GC 1.9329 0.0429 66 1
TPR--NTRK1 76 2 76.00 2.00 TPR^ENSG00000047410.14 8773 chr1:186360765:- NTRK1^ENSG00000198400.13 62972 chr1:156874571:+ ONLY_REF_SPLICE YES 1266 29 0.06 2.63 GT 1.6402 AG 1.6895 0.2693 2068 0
CD74--ROS1 67 34 67.00 28.79 CD74^ENSG00000019582.16 7107 chr5:150402563:- ROS1^ENSG00000047936.11 44344 chr6:117337340:- ONLY_REF_SPLICE YES 18738 17 0.01 5.67 GT 1.8892 AG 1.7465 0.3307 1566 0
CD74--ROS1 56 10 56.00 2.95 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 44344 chr6:117337340:- ONLY_REF_SPLICE YES 18228 17 0.00 3.72 GT 1.7819 AG 1.7465 0.2035 1261 0
CD74--ROS1 50 7 50.00 1.58 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 47540 chr6:117326414:- ONLY_REF_SPLICE YES 18228 307 0.00 0.19 GT 1.7819 AG 1.7232 0.1781 1406 0
CD74--ROS1 42 4 42.00 0.69 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 48731 chr6:117324415:- ONLY_REF_SPLICE YES 18228 342 0.00 0.14 GT 1.7819 AG 1.7465 0.1474 2407 0
ETV6--NTRK3 70 19 70.00 19.00 ETV6^ENSG00000139083.11 11237 chr12:11869969:+ NTRK3^ENSG00000140538.16 36490 chr15:88126373:- ONLY_REF_SPLICE YES 2022 7 0.04 11.25 GT 1.7819 AG 1.9656 0.3073 3007 0
TLK2--AC240565.1 74 0 74.00 0.00 TLK2^ENSG00000146872.18 17137 chr17:62560126:+ AC240565.1^ENSG00000280136.2 41242 chr17:106864:- ONLY_REF_SPLICE YES 587 47 0.13 1.56 GT 1.8892 AG 1.8892 0.2555 1734 0
ETV6--NTRK2 72 5 72.00 5.00 ETV6^ENSG00000139083.11 11237 chr12:11869969:+ NTRK2^ENSG00000148053.17 50653 chr9:84934162:+ ONLY_REF_SPLICE YES 2025 141 0.04 0.55 GT 1.7819 AG 1.9329 0.2659 1252 0
EWSR1--FLI1 71 6 71.00 3.80 EWSR1^ENSG00000182944.18 11554 chr22:29287134:+ FLI1^ENSG00000151702.17 37165 chr11:128805366:+ ONLY_REF_SPLICE YES 2376 1024 0.03 0.08 GT 1.8062 AG 1.7819 0.2582 1466 0
EWSR1--FLI1 22 9 22.00 4.34 EWSR1^ENSG00000182944.18 22093 chr22:29300521:+ FLI1^ENSG00000151702.17 33405 chr11:128772782:+ ONLY_REF_SPLICE YES 5 1009 5.33 0.03 GT 1.3996 AG 1.8892 0.091 692 0
EWSR1--FLI1 16 6 16.00 0.86 EWSR1^ENSG00000182944.18 11554 chr22:29287134:+ FLI1^ENSG00000151702.17 34609 chr11:128781958:+ ONLY_REF_SPLICE YES 2376 985 0.01 0.02 GT 1.8062 AG 1.8256 0.0582 995 0
PAX8--PPARG 70 6 70.00 6.00 PAX8^ENSG00000125618.18 10865 chr2:113227155:- PPARG^ENSG00000132170.23 26778 chr3:12312380:+ ONLY_REF_SPLICE YES 121 3 0.63 19.25 GT 1.8295 AG 1.8295 0.2624 3874 0
CD74--NRG1 70 4 70.00 4.00 CD74^ENSG00000019582.16 7107 chr5:150402563:- NRG1^ENSG00000157168.20 39090 chr8:32756403:+ ONLY_REF_SPLICE YES 18742 0 0.00 75.00 GT 1.8892 AG 1.3383 0.2555 1916 0
GOPC--ROS1 65 7 65.00 7.00 GOPC^ENSG00000047932.14 9512 chr6:117566854:- ROS1^ENSG00000047936.11 48343 chr6:117337340:- ONLY_REF_SPLICE YES 549 17 0.13 4.06 GT 1.7968 AG 1.7465 0.2486 1852 0
MGA--NUTM1 66 0 66.00 0.00 MGA^ENSG00000174197.16 31460 chr15:41762362:+ NUTM1^ENSG00000184507.16 46224 chr15:34347969:+ ONLY_REF_SPLICE YES 272 11 0.25 5.58 GT 1.5656 AG 1.9329 0.2279 341 0
QKI--NTRK2 65 1 65.00 1.00 QKI^ENSG00000112531.17 13018 chr6:163563719:+ NTRK2^ENSG00000148053.17 60757 chr9:84948462:+ ONLY_REF_SPLICE YES 1108 148 0.06 0.45 GT 1.7819 AG 1.9329 0.2279 1837 0
TRIM24--NTRK2 63 1 63.00 1.00 TRIM24^ENSG00000122779.18 16636 chr7:138573642:+ NTRK2^ENSG00000148053.17 51924 chr9:84861040:+ ONLY_REF_SPLICE YES 604 124 0.11 0.52 GT 1.8892 AG 1.7232 0.221 1039 0
KIF5B--ALK 62 0 62.00 0.00 KIF5B^ENSG00000170759.11 16251 chr10:32021226:- ALK^ENSG00000171094.18 52570 chr2:29223528:- ONLY_REF_SPLICE YES 1282 26 0.05 2.33 GC 1.7465 AG 1.9086 0.2141 113 0
KIF5B--ALK 16 2 16.00 2.00 KIF5B^ENSG00000170759.11 19977 chr10:32017143:- ALK^ENSG00000171094.18 27631 chr2:29921586:- ONLY_REF_SPLICE YES 986 0 0.02 19.00 GT 1.9656 GC 1.9329 0.0621 636 0
LPP--HMGA2 61 3 61.00 3.00 LPP^ENSG00000145012.13 33637 chr3:188872763:+ HMGA2^ENSG00000149948.14 53982 chr12:65824483:+ ONLY_REF_SPLICE YES 17 0 3.61 65.00 GT 1.9656 TC 1.8323 0.221 2477 0
ETV6--PDGFRB 61 1 61.00 1.00 ETV6^ENSG00000139083.11 18918 chr12:11895377:+ PDGFRB^ENSG00000113721.14 31979 chr5:150129968:- ONLY_REF_SPLICE YES 0 162 63.00 0.39 TA 1.5656 AG 1.9329 0.2141 2865 0
TBL1XR1--TP63 61 1 61.00 1.00 TBL1XR1^ENSG00000177565.18 31430 chr3:177032971:- TP63^ENSG00000073282.14 49105 chr3:189808272:+ ONLY_REF_SPLICE YES 948 155 0.07 0.40 GT 1.9329 AG 1.7056 0.2141 1327 0
NAB2--STAT6 54 18 54.00 18.00 NAB2^ENSG00000166886.13 4786 chr12:57093598:+ STAT6^ENSG00000166888.12 22861 chr12:57099440:- ONLY_REF_SPLICE YES 1512 2794 0.05 0.03 GT 1.8295 AG 1.9656 0.2485 579 0
TCF3--PBX1 58 0 58.00 0.00 TCF3^ENSG00000071564.17 13409 chr19:1619111:- PBX1^ENSG00000185630.19 46234 chr1:164792494:+ ONLY_REF_SPLICE YES 1737 3 0.03 14.75 GT 1.9219 AG 1.8892 0.2002 1715 0
TCF3--PBX1 53 0 53.00 0.00 TCF3^ENSG00000071564.17 14545 chr19:1615686:- PBX1^ENSG00000185630.19 46234 chr1:164792494:+ ONLY_REF_SPLICE YES 1537 3 0.04 13.50 GT 1.4295 AG 1.8892 0.183 1294 0
FUS--DDIT3 56 1 56.00 1.00 FUS^ENSG00000089280.19 11298 chr16:31191605:+ DDIT3^ENSG00000175197.12 15431 chr12:57520514:- INCL_NON_REF_SPLICE YES 0 4 58.00 11.60 TT 1.7056 AG 1.9329 0.1968 1673 0
NCOA4--RET 53 11 53.00 11.00 NCOA4^ENSG00000266412.6 11059 chr10:46010223:- RET^ENSG00000165731.20 30127 chr10:43116584:+ ONLY_REF_SPLICE YES 1252 13 0.05 4.64 GT 1.5656 AG 1.8323 0.221 5099 0
RUNX1--RUNX1T1 53 5 53.00 4.35 RUNX1^ENSG00000159216.19 35856 chr21:34799301:- RUNX1T1^ENSG00000079102.16 47689 chr8:92095171:- ONLY_REF_SPLICE YES 236 6 0.25 8.43 GT 1.8892 AG 1.8892 0.198 1273 0
RUNX1--RUNX1T1 27 2 27.00 0.65 RUNX1^ENSG00000159216.19 27252 chr21:34880557:- RUNX1T1^ENSG00000079102.16 47689 chr8:92095171:- ONLY_REF_SPLICE YES 424 6 0.07 4.29 GT 1.6895 AG 1.8892 0.0954 1615 0
EZR--ROS1 50 12 50.00 12.00 EZR^ENSG00000092820.18 12698 chr6:158769326:- ROS1^ENSG00000047936.11 50185 chr6:117337340:- ONLY_REF_SPLICE YES 2869 18 0.02 3.32 GT 1.7465 AG 1.7465 0.214 1897 0
EZR--ROS1 15 0 15.00 0.00 EZR^ENSG00000092820.18 11260 chr6:158770764:- ROS1^ENSG00000047936.11 53381 chr6:117326414:- ONLY_REF_SPLICE YES 477 307 0.03 0.05 GT 1.2867 AG 1.7232 0.0518 75 1
KIF5B--RET 49 4 49.00 3.16 KIF5B^ENSG00000170759.11 18804 chr10:32018316:- RET^ENSG00000165731.20 40089 chr10:43116584:+ ONLY_REF_SPLICE YES 1522 13 0.04 3.86 GT 1.5546 AG 1.8323 0.1801 4064 0
KIF5B--RET 37 2 37.00 0.84 KIF5B^ENSG00000170759.11 14629 chr10:32022848:- RET^ENSG00000165731.20 40089 chr10:43116584:+ ONLY_REF_SPLICE YES 1300 13 0.03 2.86 GT 1.7819 AG 1.8323 0.1306 1676 0
HEY1--NCOA2 45 18 45.00 18.00 HEY1^ENSG00000164683.18 2207 chr8:79766651:- NCOA2^ENSG00000140396.13 25820 chr8:70148483:- ONLY_REF_SPLICE YES 183 861 0.35 0.07 GT 1.3996 AG 1.8892 0.2175 1409 0
YWHAE--NUTM2B 48 5 48.00 5.00 YWHAE^ENSG00000108953.17 7788 chr17:1354211:- NUTM2B^ENSG00000188199.10 15826 chr10:79706042:+ ONLY_REF_SPLICE YES 2879 458 0.02 0.12 GT 1.8892 AG 1.9656 0.183 1841 0
STIL--TAL1 46 3 46.00 3.00 STIL^ENSG00000123473.16 4716 chr1:47304889:- TAL1^ENSG00000162367.11 29830 chr1:47229771:- ONLY_REF_SPLICE YES 453 2 0.11 16.67 GT 1.9329 AG 1.7968 0.1692 2619 0
MYB--NFIB 42 4 42.00 4.00 MYB^ENSG00000118513.19 19078 chr6:135219172:+ NFIB^ENSG00000147862.17 40521 chr9:14120624:- ONLY_REF_SPLICE YES 0 304 47.00 0.15 CT 1.5058 AG 1.8256 0.1588 4763 0
EWSR1--WT1 42 0 42.00 0.00 EWSR1^ENSG00000182944.18 22093 chr22:29300521:+ WT1^ENSG00000184937.16 39512 chr11:32392755:- ONLY_REF_SPLICE YES 6 118 6.14 0.36 GT 1.3996 AG 1.8892 0.145 99 1
ASPSCR1--TFE3 36 1 36.00 1.00 ASPSCR1^ENSG00000169696.16 23677 chr17:82017406:+ TFE3^ENSG00000068323.17 26731 chrX:49043357:- ONLY_REF_SPLICE YES 0 49 38.00 0.76 CG 1.9086 GC 1.9656 0.1278 355 0
KMT2A--SEPTIN9 34 0 34.00 0.00 KMT2A^ENSG00000118058.23 54476 chr11:118526832:+ SEPTIN9^ENSG00000184640.20 63337 chr17:77307141:+ ONLY_REF_SPLICE YES 0 542 35.00 0.06 CA 1.8892 AG 1.7819 0.1174 1560 0
FGFR1--PLAG1 31 8 31.00 8.00 FGFR1^ENSG00000077782.21 27569 chr8:38413912:- PLAG1^ENSG00000181690.8 37316 chr8:56211267:- INCL_NON_REF_SPLICE YES 1033 5 0.04 6.67 CT 1.9329 AC 1.9899 0.1346 1368 0
FGFR1--PLAG1 0 10 0.00 10.00 FGFR1^ENSG00000077782.21 34258 chr8:38400788:- PLAG1^ENSG00000181690.8 37259 chr8:56211121:- NO_JUNCTION_READS_IDENTIFIED NO 0 0 11.00 11.00 AA 1.5656 GC 0.9183 0.0345 225 0
SS18--SSX4B 32 4 32.00 4.00 SS18^ENSG00000141380.14 24878 chr18:26016253:- SSX4B^ENSG00000269791.5 28925 chrX:48410864:- ONLY_REF_SPLICE YES 0 0 37.00 37.00 TT 1.3383 AG 1.9219 0.1243 945 0
PTPRK--RSPO3 32 2 32.00 2.00 PTPRK^ENSG00000152894.15 17295 chr6:128184432:- RSPO3^ENSG00000146374.14 55391 chr6:127148648:+ ONLY_REF_SPLICE YES 130 2 0.27 11.67 GT 1.7968 AG 1.9329 0.1174 1434 0
RANBP2--ALK 30 6 30.00 6.00 RANBP2^ENSG00000153201.16 15728 chr2:108758548:+ ALK^ENSG00000171094.18 36170 chr2:29921586:- ONLY_REF_SPLICE YES 1158 0 0.03 37.00 GT 1.9329 GC 1.9329 0.1243 1252 0
FGF13--FOXN3 31 0 31.00 0.00 FGF13^ENSG00000129682.16 4912 chrX:138990508:- FOXN3^ENSG00000053254.16 57939 chr14:89180806:- ONLY_REF_SPLICE YES 0 871 32.00 0.04 GT 1.9329 AG 1.9899 0.107 2319 0
FGF13--FOXN3 4 0 4.00 0.00 FGF13^ENSG00000129682.16 4912 chrX:138990508:- FOXN3^ENSG00000053254.16 54325 chr14:89190449:- ONLY_REF_SPLICE YES 0 774 5.00 0.01 GT 1.9329 AG 1.9656 0.0138 1641 0
BCR--ABL1 27 2 27.00 2.00 BCR^ENSG00000186716.21 21553 chr22:23290413:+ ABL1^ENSG00000097007.19 44699 chr9:130854064:+ ONLY_REF_SPLICE YES 413 519 0.07 0.06 GT 1.8892 AG 1.8892 0.1001 503 0
TPM3--ROS1 26 3 26.00 3.00 TPM3^ENSG00000143549.21 13389 chr1:154170400:- ROS1^ENSG00000047936.11 65630 chr6:117324415:- ONLY_REF_SPLICE YES 4282 342 0.01 0.09 GT 1.9329 AG 1.7465 0.1002 2234 0
FGFR3--BAIAP2L1 24 1 24.00 1.00 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ BAIAP2L1^ENSG00000006453.14 16927 chr7:98362432:- ONLY_REF_SPLICE YES 24 154 1.04 0.17 GT 1.8892 AG 1.8062 0.0864 1171 0
KMT2A--MLLT11 23 1 23.00 1.00 KMT2A^ENSG00000118058.23 54480 chr11:118526836:+ MLLT11^ENSG00000213190.4 58638 chr1:151067223:+ INCL_NON_REF_SPLICE YES 0 158 25.00 0.16 GT 1.9219 AG 1.9656 0.0829 851 0
HMGA2--WIF1 21 8 21.00 8.00 HMGA2^ENSG00000149948.14 24406 chr12:65966291:+ WIF1^ENSG00000156076.10 29296 chr12:65077854:- ONLY_REF_SPLICE YES 0 0 30.00 30.00 TC 1.8892 AG 1.9086 0.1001 1500 0
CDKN2D--WDFY2 21 5 21.00 5.00 CDKN2D^ENSG00000129355.7 3505 chr19:10566460:- WDFY2^ENSG00000139668.9 16506 chr13:51675170:+ ONLY_REF_SPLICE YES 0 205 27.00 0.13 GC 1.9656 AG 1.9086 0.0898 2248 0
EGFR--SEPTIN14 19 6 19.00 6.00 EGFR^ENSG00000146648.19 30734 chr7:55200413:+ SEPTIN14^ENSG00000154997.9 54769 chr7:55796092:- ONLY_REF_SPLICE YES 99 32 0.26 0.79 GT 1.8892 AG 1.9899 0.0863 658 0
RAD51B--CEP170P1 18 0 18.00 0.00 RAD51B^ENSG00000182185.18 11638 chr14:67887204:+ CEP170P1^ENSG00000154608.14 45156 chr4:118493552:+ ONLY_REF_SPLICE YES 790 2 0.02 6.33 GT 1.9329 AG 1.9656 0.0621 1315 0
CHCHD7--PLAG1 16 0 16.00 0.00 CHCHD7^ENSG00000170791.18 1152 chr8:56211837:+ PLAG1^ENSG00000181690.8 11176 chr8:56211273:- ONLY_REF_SPLICE YES 327 1 0.05 8.50 GT 1.4566 GC 1.8892 0.0552 90 1
SLC8A1-AS1--LMO3 16 0 16.00 0.00 SLC8A1-AS1^ENSG00000227028.6 8411 chr2:39917659:+ LMO3^ENSG00000048540.15 53977 chr12:16600868:- ONLY_REF_SPLICE YES 0 278 17.00 0.06 GT 1.8892 AG 1.9086 0.0552 1256 0
DNAJB1--PRKACA 13 1 13.00 1.00 DNAJB1^ENSG00000132002.9 13592 chr19:14516466:- PRKACA^ENSG00000072062.15 25460 chr19:14107409:- ONLY_REF_SPLICE YES 811 2 0.02 5.00 GT 1.9086 AG 1.7819 0.0484 744 0
AC016629.1--RPL23AP82 12 0 12.00 0.00 AC016629.1^ENSG00000269032.1 1199 chr19:58586356:+ RPL23AP82^ENSG00000184319.16 10257 chr22:50798655:+ ONLY_REF_SPLICE YES 0 24 13.00 0.52 GT 1.7819 AG 1.8062 0.0414 10000 0
AC016629.1--RPL23AP82 4 0 4.00 0.00 AC016629.1^ENSG00000269032.1 1199 chr19:58586356:+ RPL23AP82^ENSG00000184319.16 8653 chr22:50788750:+ ONLY_REF_SPLICE YES 0 27 5.00 0.18 GT 1.7819 AG 1.6895 0.0138 10000 0
AC016629.1--RPL23AP82 1 0 1.00 0.00 AC016629.1^ENSG00000269032.1 1199 chr19:58586356:+ RPL23AP82^ENSG00000184319.16 8798 chr22:50788895:+ ONLY_REF_SPLICE YES 0 28 2.00 0.07 GT 1.7819 AG 1.8892 0.0035 10000 0
PRCC--TFE3 11 0 11.00 0.00 PRCC^ENSG00000143294.15 12284 chr1:156800815:+ TFE3^ENSG00000068323.17 15338 chrX:49043357:- ONLY_REF_SPLICE YES 0 49 12.00 0.24 CA 1.8892 GC 1.9656 0.038 1919 0
MAML2--CRTC1 6 3 6.00 3.00 MAML2^ENSG00000184384.14 12130 chr11:95976592:- CRTC1^ENSG00000105662.16 15133 chr19:18683686:+ INCL_NON_REF_SPLICE YES 0 5 10.00 1.67 GT 1.8062 AG 1.5546 0.0311 7654 0
TFE3--ASPSCR1 4 2 4.00 2.00 TFE3^ENSG00000068323.17 11266 chrX:49028719:- ASPSCR1^ENSG00000169696.16 15089 chr17:81977636:+ INCL_NON_REF_SPLICE YES 0 45 7.00 0.15 CT 1.9899 AC 1.6895 0.0207 792 0
132 rows