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multiqc_general_stats.tsv
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s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_rna_exp0032/A2327GFLT3/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats.tsv
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cgp_rna_exp0032_2cae617
Published
May 16, 2026 6:46 AM

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sample_id IS_CONTAMINATED CONTAMINATION_PCT READS FRAC_UNMAPPED FRAC_DUPES UNIQUE_READS FRAC_READS_ON_TARGET FRAC_PAIRS_ON_TARGET FRAC_READS_OFF_TARGET FRAC_PAIRS_OFF_TARGET READS_ON_TARGET PAIRS_ON_TARGET READS_OFF_TARGET PAIRS_OFF_TARGET MEAN_DEPTH Q50_DEPTH FRAC_BASES_GT30X FRAC_BASES_GT100X N_Q30 GC_BIAS FRAGMENT_LENGTH_MEAN FRAGMENT_LENGTH_MEDIAN PCT_MITO_EST_COUNTS PCT_RIBO_EST_COUNTS PCT_HK_EST_COUNTS PCT_MALE_EST_COUNTS MITOCHONDRIAL_CONTAMINATION RIBOSOMAL_CONTAMINATION PCT_HK_TPM PCT_MALE_TPM TOTAL_READS EXPECTED_DISTINCT SUMMED_MEDIAN SUMMED_MEAN PERCENT_DUPLICATION PCT_RIBOSOMAL_BASES PCT_MRNA_BASES PROPER_PAIRS_PERCENT UNIQUELY_MAPPED_PERCENT MAPPED_READS PCT_DUPLICATION AFTER_FILTERING_Q30_RATE AFTER_FILTERING_Q30_BASES FILTERING_RESULT_PASSED_FILTER_READS AFTER_FILTERING_GC_CONTENT PCT_SURVIVING PCT_ADAPTER FRAGMENT_LENGTH PERCENT_ALIGNED PSEUDOALIGNED_READS PERCENT_DUPLICATES PERCENT_GC AVG_SEQUENCE_LENGTH MEDIAN_SEQUENCE_LENGTH PERCENT_FAILS TOTAL_SEQUENCES
rna_s1804 No 0.0 578591870.0 0.010433 0.54632 262495542.0 0.82908 0.868805 0.147922 0.131195 217629886.0 110841898.0 38828989.0 16737781.0 478.961478 137.0 0.602613 0.525969 0.948033 0.0 158.8 151.0 0.11 1.5 0.59 0.0 0.2 4.32 0.84 0.0 9999000000.0 318210895.0 189 407.220882 0.55208 9.999999999999999e-05 92.6043 87.89899017733438 95.18 275356627.0 34.496300000000005 0.945315 75525592582.0 578591870.0 0.54255 96.43197833333333 40.94468283333333
rna_s1804_1 158.8 92.76829866275169 268374917.0 84.47198403969585 54.0 151.0 151 27.27272727272727 498396833.0
rna_s1804_2 83.46301769964788 55.0 151.0 151 27.27272727272727 498396833.0
rna_s1804_trimmed_1 80.93823702084714 54.0 137.9921220738895 151 18.181818181818183 289295935.0
rna_s1804_trimmed_2 81.45401846806622 54.0 138.16117858344606 151 9.090909090909092 289295935.0
rna_s1805 No 0.0 574310328.0 0.01111 0.525054 272766124.0 0.831462 0.871713 0.145147 0.128287 226794647.0 115472210.0 39591150.0 16993576.0 497.171786 144.0 0.605633 0.529553 0.946675 0.0 157.7 150.0 0.1 1.55 0.6 0.0 0.19 4.45 0.83 0.0 9999000000.0 361357264.0 187 398.787757 0.530953 9.999999999999999e-05 92.3786 87.01312982483442 94.91 272528116.0 32.9901 0.943746 74499756566.0 574310328.0 0.542673 95.718388 41.9492825
rna_s1805_1 157.7 92.45851382286129 265499397.0 84.61139847820372 54.0 151.0 151 36.36363636363637 569384054.0
rna_s1805_2 83.2221664946964 55.0 151.0 151 27.27272727272727 569384054.0
rna_s1805_trimmed_1 80.08446607820862 54.0 137.34499165057676 151 18.181818181818183 287155164.0
rna_s1805_trimmed_2 80.48433604585004 54.0 137.54447908169954 151 9.090909090909092 287155164.0
rna_s1806 No 0.0 578744574.0 0.010563 0.528978 272601432.0 0.833887 0.873637 0.143687 0.126363 227318653.0 115806822.0 39169277.0 16750275.0 502.535064 146.0 0.606394 0.530572 0.947834 0.0 159.4 151.0 0.11 1.53 0.59 0.0 0.19 4.43 0.82 0.0 9999000000.0 337178905.0 191 417.096729 0.534625 9.999999999999999e-05 92.4311 87.48671711895064 95.05 275053387.0 33.6898 0.945136 75517591828.0 578744574.0 0.542432 96.45742899999999 40.84545683333333
rna_s1806_1 159.4 92.52828623495655 267751218.0 85.09805492030301 54.0 151.0 151 27.27272727272727 581440955.0
rna_s1806_2 84.21471131948893 55.0 151.0 151 27.27272727272727 581440955.0
rna_s1806_trimmed_1 80.29613692258853 53.0 137.9653698144218 151 18.181818181818183 289372287.0
rna_s1806_trimmed_2 81.13570444244615 54.0 138.1386154853177 151 9.090909090909092 289372287.0
rna_s1807 No 0.0 577864476.0 0.010696 0.547317 261589435.0 0.830321 0.870675 0.14605 0.129325 217203239.0 110588217.0 38205183.0 16426078.0 477.196371 136.0 0.602648 0.525635 0.948067 0.0 157.7 150.0 0.11 1.52 0.6 0.0 0.2 4.37 0.83 0.0 9999000000.0 320542105.0 188 405.965325 0.553235 9.999999999999999e-05 92.5685 87.45608591085546 95.03 274582453.0 34.6496 0.945348 75293285780.0 577864476.0 0.543524 96.31074600000001 41.50987883333334
rna_s1807_1 157.7 92.66419727105702 267736739.0 84.1447156285299 54.0 151.0 151 27.27272727272727 459093850.0
rna_s1807_2 82.89035685820862 55.0 151.0 151 27.27272727272727 459093850.0
rna_s1807_trimmed_1 80.98886861348298 54.0 137.73334457749226 151 18.181818181818183 288932238.0
rna_s1807_trimmed_2 81.11559404588368 54.0 137.9074093040459 151 9.090909090909092 288932238.0
rna_s1808 No 0.0 575848510.0 0.010849 0.548161 260190688.0 0.826323 0.866554 0.149666 0.133446 215001446.0 109437032.0 38941600.0 16852949.0 468.918351 134.0 0.601421 0.524433 0.946182 0.0 157.0 149.0 0.1 1.55 0.6 0.0 0.18 4.46 0.83 0.0 9999000000.0 308025251.0 185 400.561777 0.554174 9.999999999999999e-05 92.5916 87.80624679184736 95.13 273888766.0 34.5218 0.943302 74612614671.0 575848510.0 0.541217 95.97475166666666 42.69905833333333
rna_s1808_1 157.0 92.71957341697386 266962141.0 85.62669988390893 54.0 151.0 151 27.27272727272727 618159515.0
rna_s1808_2 84.37277322382322 55.0 151.0 151 27.27272727272727 618159515.0
rna_s1808_trimmed_1 80.60624973714738 53.0 137.261674908215 151 18.181818181818183 287924255.0
rna_s1808_trimmed_2 81.01557292702542 54.0 137.43762141886936 151 9.090909090909092 287924255.0
rna_s1809 No 0.0 576841720.0 0.01065 0.555814 256224795.0 0.826316 0.865744 0.149707 0.134256 211722545.0 107681301.0 38358747.0 16698817.0 456.740866 131.0 0.600092 0.522603 0.945875 0.0 153.7 147.0 0.11 1.54 0.6 0.0 0.2 4.41 0.83 0.0 9999000000.0 356880582.0 180 379.040186 0.561798 9.999999999999999e-05 92.71740000000001 87.98631452528663 95.19 274545358.0 34.2573 0.943124 74340155265.0 576841720.0 0.542105 96.14028666666667 44.34257366666667
rna_s1809_1 153.7 92.85038294386891 267799873.0 85.69955895869043 54.0 151.0 151 27.27272727272727 576795830.0
rna_s1809_2 84.17622535819467 55.0 151.0 151 27.27272727272727 576795830.0
rna_s1809_trimmed_1 81.26642348029705 53.0 136.54648556279875 151 18.181818181818183 288420860.0
rna_s1809_trimmed_2 81.32084636122434 54.0 136.72979155529873 151 9.090909090909092 288420860.0
rna_s1810 No 0.0 578348088.0 0.010531 0.539084 266570007.0 0.831832 0.871329 0.145321 0.128671 221741359.0 112915050.0 38738127.0 16674406.0 486.878424 140.0 0.603935 0.527527 0.949466 0.0 157.1 149.0 0.11 1.52 0.6 0.0 0.2 4.36 0.85 0.0 9999000000.0 341540868.0 188 405.851085 0.544821 9.999999999999999e-05 92.6279 87.80178229475854 95.15 275158856.0 34.2329 0.946795 75436723688.0 578348088.0 0.5429 96.391348 41.53107033333333
rna_s1810_1 157.1 92.76191261481269 268243374.0 84.18776516455816 54.0 151.0 151 27.27272727272727 486535999.0
rna_s1810_2 83.19333594164611 55.0 151.0 151 27.27272727272727 486535999.0
rna_s1810_trimmed_1 80.69233184520434 54.0 137.67151958147392 151 18.181818181818183 289174044.0
rna_s1810_trimmed_2 81.26947144816576 54.0 137.84164085280074 151 9.090909090909092 289174044.0
rna_s1811 No 0.0 579300306.0 0.010415 0.561129 254238241.0 0.827136 0.866891 0.149133 0.133109 210289660.0 106996264.0 37915404.0 16429039.0 456.481881 131.0 0.600188 0.522252 0.948547 0.0 154.6 147.0 0.12 1.52 0.6 0.0 0.21 4.36 0.84 0.0 9999000000.0 307942423.0 182 387.759225 0.567034 9.999999999999999e-05 92.7577 88.02670332411266 95.21 275766098.0 35.4815 0.945922 75057129027.0 579300306.0 0.542425 96.550051 43.65221366666667
rna_s1811_1 154.6 92.91887064875812 269139651.0 83.26083185289886 54.0 151.0 151 27.27272727272727 386236582.0
rna_s1811_2 82.00633846921903 54.0 151.0 151 27.27272727272727 386236582.0
rna_s1811_trimmed_1 81.56491010569167 54.0 136.8779819253194 151 18.181818181818183 289650153.0
rna_s1811_trimmed_2 81.5536720458136 54.0 137.05097088969947 151 9.090909090909092 289650153.0
41 rows