Processes


NFCORE_RNAFUSION:GENERATE_SAMPLE_TYPE_MAP	1
DEMULTIPLEX:BCLCONVERT	8
DEMULTIPLEX:FLOWCELL_QC	1
DEMULTIPLEX:AGGREGATE_DEMUX_STATS	1
DEMULTIPLEX:CAT_FASTQ	8
DEMULTIPLEX:SAMPLESHEET_FROM_MERGED	1
RNAFUSION:FASTQC	8	3
TRIM_WORKFLOW:FASTP	8	7
TRIM_WORKFLOW:FASTQC_FOR_FASTP	8
RNAFUSION:KALLISTO_INDEX	1
RNAFUSION:KALLISTO_QUANT	8
RNAFUSION:KALLISTO_TO_TX2GENE_QC	8
RNAFUSION:KALLISTO_TO_MULTIQC	8
RNAFUSION:GTF2BED	1
FASTQ_ALIGN_STAR:STAR_ALIGNMENT	8
FASTQ_ALIGN_STAR:SAMTOOLS_INDEX_STAR_ALIGNMENT	8
RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM	8
RNAFUSION:SAMTOOLS_INDEX_ALIGNMENT_CRAM	8
ARRIBA_WORKFLOW:ARRIBA	8
ARRIBA_WORKFLOW:ARRIBA_FILTER	8
STARFUSION_WORKFLOW:STARFUSION	8	8
STARFUSION_WORKFLOW:STARFUSION_FILTER	8
FUSIONREPORT_WORKFLOW:FUSIONREPORT	8
FUSIONINSPECTOR_WORKFLOW:FUSIONINSPECTOR	8
FUSIONINSPECTOR_WORKFLOW:AGAT_CONVERTSPGFF2TSV	8
FUSIONINSPECTOR_WORKFLOW:VCF_COLLECT	8
FUSIONINSPECTOR_WORKFLOW:ARRIBA_VISUALISATION	8
RNAFUSION:CTATSPLICING_STARTOCANCERINTRONS	8	8
RNAFUSION:CANCER_INTRONS_TO_VCF	8
QC_WORKFLOW:GATK4_MARKDUPLICATES	8
QC_WORKFLOW:PICARD_COLLECTRNASEQMETRICS	8
QC_WORKFLOW:PICARD_COLLECTINSERTSIZEMETRICS	8
BAM_RSEQC:RSEQC_BAMSTAT	8
BAM_RSEQC:RSEQC_INNERDISTANCE	8
BAM_RSEQC:RSEQC_INFEREXPERIMENT	8
BAM_RSEQC:RSEQC_JUNCTIONANNOTATION	8
BAM_RSEQC:RSEQC_JUNCTIONSATURATION	8
BAM_RSEQC:RSEQC_READDISTRIBUTION	8
BAM_RSEQC:RSEQC_READDUPLICATION	8
QC_WORKFLOW:SEQTOOL_QC	8
QC_WORKFLOW:SEQTOOL_WHOLE_BAM_SATURATION	8
QC_WORKFLOW:SEQTOOL_TO_MULTIQC	8
QC_WORKFLOW:PRESEQ_LCEXTRAP	8
QC_WORKFLOW:PRESEQ_TO_MULTIQC	8
RNA_CONTAMINATION_DETECTION_WORKFLOW:NGSCheckMATE	8
RNA_CONTAMINATION_DETECTION_WORKFLOW:EXTRACT_VAF_FEATURES	8
RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION	8
RNAFUSION:CONTAMINATION_SKIPPED_LOW_READS
RNAFUSION:CONTAMINATION_TO_MULTIQC	8
RNAFUSION:MULTIQC	1
RNAFUSION:MULTIQC_GENERAL_STATS_TXT_TO_JSON	1
RNAFUSION:MULTIQC_GENERAL_STATS_TXT_TO_TSV	1
RNAFUSION:MULTIQC_EXTRACT_CONTROLS	1
RNAFUSION:RUN_LEVEL_INTERMEDIATE	1
RNAFUSION:RUN_LEVEL_METRICS	1