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Filename
Index_Hopping_Counts.csv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_rna_exp0032/A2327GFLT3/nfcore_rnafusion__73d51683--20260607-225254/bclconvert/L003/Reports/Index_Hopping_Counts.csv
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2.9 KB
Workflow Run
cgp_rna_exp0032_73d51683
Published
Jun 07, 2026 11:11 PM

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Lane SampleID index index2 # Reads % of Hopped Reads % of All Reads
3 rna_s1804 CTGATCGT GCGCATAT 62920037 0.046164
3 rna_s1805 ACTCTCGA CTGTACCA 71658713 0.052576
3 rna_s1806 TGAGCTAG GAACGGTT 73944422 0.054253
3 rna_s1807 GAGACGAT ACCGGTTA 57441648 0.042145
3 rna_s1808 CTTGTCGA CGATGTTC 77480540 0.056847
3 rna_s1809 TTCCAAGG CTACAAGG 73206232 0.053711
3 rna_s1810 CGCATGAT AAGCCTGA 61915378 0.045427
3 rna_s1811 ACGGAACA ACGAGAAC 48823221 0.035822
3 CTGATCGT CTGTACCA 31229 0.021545 0.000023
3 CTGATCGT GAACGGTT 29270 0.020193 0.000021
3 CTGATCGT ACCGGTTA 24117 0.016638 0.000018
3 CTGATCGT CGATGTTC 39449 0.027216 0.000029
3 CTGATCGT CTACAAGG 29149 0.020110 0.000021
3 CTGATCGT AAGCCTGA 36249 0.025008 0.000027
3 CTGATCGT ACGAGAAC 23662 0.016324 0.000017
3 ACTCTCGA GCGCATAT 19481 0.013440 0.000014
3 ACTCTCGA GAACGGTT 22068 0.015225 0.000016
3 ACTCTCGA ACCGGTTA 18436 0.012719 0.000014
3 ACTCTCGA CGATGTTC 38701 0.026699 0.000028
3 ACTCTCGA CTACAAGG 28806 0.019873 0.000021
3 ACTCTCGA AAGCCTGA 19078 0.013162 0.000014
3 ACTCTCGA ACGAGAAC 19358 0.013355 0.000014
3 TGAGCTAG GCGCATAT 25804 0.017802 0.000019
3 TGAGCTAG CTGTACCA 29863 0.020602 0.000022
3 TGAGCTAG ACCGGTTA 27124 0.018713 0.000020
3 TGAGCTAG CGATGTTC 32525 0.022439 0.000024
3 TGAGCTAG CTACAAGG 32313 0.022292 0.000024
3 TGAGCTAG AAGCCTGA 25628 0.017681 0.000019
3 TGAGCTAG ACGAGAAC 21599 0.014901 0.000016
3 GAGACGAT GCGCATAT 18875 0.013022 0.000014
3 GAGACGAT CTGTACCA 25597 0.017659 0.000019
3 GAGACGAT GAACGGTT 22931 0.015820 0.000017
3 GAGACGAT CGATGTTC 26712 0.018428 0.000020
3 GAGACGAT CTACAAGG 23305 0.016078 0.000017
3 GAGACGAT AAGCCTGA 22683 0.015649 0.000017
3 GAGACGAT ACGAGAAC 21986 0.015168 0.000016
3 CTTGTCGA GCGCATAT 28046 0.019349 0.000021
3 CTTGTCGA CTGTACCA 59951 0.041360 0.000044
3 CTTGTCGA GAACGGTT 27860 0.019220 0.000020
3 CTTGTCGA ACCGGTTA 23575 0.016264 0.000017
3 CTTGTCGA CTACAAGG 30742 0.021209 0.000023
3 CTTGTCGA AAGCCTGA 29178 0.020130 0.000021
3 CTTGTCGA ACGAGAAC 21009 0.014494 0.000015
3 TTCCAAGG GCGCATAT 21144 0.014587 0.000016
3 TTCCAAGG CTGTACCA 33623 0.023196 0.000025
3 TTCCAAGG GAACGGTT 26847 0.018522 0.000020
3 TTCCAAGG ACCGGTTA 22830 0.015750 0.000017
3 TTCCAAGG CGATGTTC 30097 0.020764 0.000022
3 TTCCAAGG AAGCCTGA 22550 0.015557 0.000017
3 TTCCAAGG ACGAGAAC 20011 0.013805 0.000015
3 CGCATGAT GCGCATAT 27276 0.018817 0.000020
3 CGCATGAT CTGTACCA 26683 0.018408 0.000020
3 CGCATGAT GAACGGTT 34161 0.023567 0.000025
3 CGCATGAT ACCGGTTA 31856 0.021977 0.000023
3 CGCATGAT CGATGTTC 30985 0.021376 0.000023
3 CGCATGAT CTACAAGG 25593 0.017656 0.000019
3 CGCATGAT ACGAGAAC 19023 0.013124 0.000014
3 ACGGAACA GCGCATAT 14633 0.010095 0.000011
3 ACGGAACA CTGTACCA 21048 0.014521 0.000015
3 ACGGAACA GAACGGTT 15125 0.010435 0.000011
3 ACGGAACA ACCGGTTA 16756 0.011560 0.000012
3 ACGGAACA CGATGTTC 19783 0.013648 0.000015
3 ACGGAACA CTACAAGG 17646 0.012174 0.000013
3 ACGGAACA AAGCCTGA 15474 0.010675 0.000011
65 rows