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Filename
Index_Hopping_Counts.csv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_rna_exp0032/A2327GFLT3/nfcore_rnafusion__73d51683--20260607-225254/bclconvert/L004/Reports/Index_Hopping_Counts.csv
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2.9 KB
Workflow Run
cgp_rna_exp0032_73d51683
Published
Jun 07, 2026 11:12 PM

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Lane SampleID index index2 # Reads % of Hopped Reads % of All Reads
4 rna_s1804 CTGATCGT GCGCATAT 63316468 0.046213
4 rna_s1805 ACTCTCGA CTGTACCA 72218641 0.052711
4 rna_s1806 TGAGCTAG GAACGGTT 74457357 0.054345
4 rna_s1807 GAGACGAT ACCGGTTA 57926818 0.042280
4 rna_s1808 CTTGTCGA CGATGTTC 77831117 0.056807
4 rna_s1809 TTCCAAGG CTACAAGG 74060265 0.054055
4 rna_s1810 CGCATGAT AAGCCTGA 62614729 0.045701
4 rna_s1811 ACGGAACA ACGAGAAC 49331388 0.036006
4 CTGATCGT CTGTACCA 31607 0.021516 0.000023
4 CTGATCGT GAACGGTT 29509 0.020088 0.000022
4 CTGATCGT ACCGGTTA 24515 0.016688 0.000018
4 CTGATCGT CGATGTTC 39110 0.026624 0.000029
4 CTGATCGT CTACAAGG 29519 0.020095 0.000022
4 CTGATCGT AAGCCTGA 36623 0.024931 0.000027
4 CTGATCGT ACGAGAAC 23845 0.016232 0.000017
4 ACTCTCGA GCGCATAT 19724 0.013427 0.000014
4 ACTCTCGA GAACGGTT 22881 0.015576 0.000017
4 ACTCTCGA ACCGGTTA 18827 0.012816 0.000014
4 ACTCTCGA CGATGTTC 39212 0.026693 0.000029
4 ACTCTCGA CTACAAGG 29453 0.020050 0.000021
4 ACTCTCGA AAGCCTGA 19486 0.013265 0.000014
4 ACTCTCGA ACGAGAAC 19892 0.013541 0.000015
4 TGAGCTAG GCGCATAT 26154 0.017804 0.000019
4 TGAGCTAG CTGTACCA 30572 0.020811 0.000022
4 TGAGCTAG ACCGGTTA 27360 0.018625 0.000020
4 TGAGCTAG CGATGTTC 32360 0.022029 0.000024
4 TGAGCTAG CTACAAGG 32729 0.022280 0.000024
4 TGAGCTAG AAGCCTGA 25995 0.017696 0.000019
4 TGAGCTAG ACGAGAAC 22222 0.015127 0.000016
4 GAGACGAT GCGCATAT 19186 0.013061 0.000014
4 GAGACGAT CTGTACCA 26134 0.017790 0.000019
4 GAGACGAT GAACGGTT 23158 0.015764 0.000017
4 GAGACGAT CGATGTTC 27172 0.018497 0.000020
4 GAGACGAT CTACAAGG 23895 0.016266 0.000017
4 GAGACGAT AAGCCTGA 23355 0.015899 0.000017
4 GAGACGAT ACGAGAAC 22144 0.015074 0.000016
4 CTTGTCGA GCGCATAT 28217 0.019208 0.000021
4 CTTGTCGA CTGTACCA 59158 0.040271 0.000043
4 CTTGTCGA GAACGGTT 27929 0.019012 0.000020
4 CTTGTCGA ACCGGTTA 23973 0.016319 0.000017
4 CTTGTCGA CTACAAGG 31561 0.021485 0.000023
4 CTTGTCGA AAGCCTGA 29388 0.020005 0.000021
4 CTTGTCGA ACGAGAAC 21015 0.014306 0.000015
4 TTCCAAGG GCGCATAT 21278 0.014485 0.000016
4 TTCCAAGG CTGTACCA 34074 0.023195 0.000025
4 TTCCAAGG GAACGGTT 27070 0.018428 0.000020
4 TTCCAAGG ACCGGTTA 23055 0.015694 0.000017
4 TTCCAAGG CGATGTTC 30482 0.020750 0.000022
4 TTCCAAGG AAGCCTGA 22981 0.015644 0.000017
4 TTCCAAGG ACGAGAAC 20247 0.013783 0.000015
4 CGCATGAT GCGCATAT 27762 0.018899 0.000020
4 CGCATGAT CTGTACCA 26940 0.018339 0.000020
4 CGCATGAT GAACGGTT 35245 0.023993 0.000026
4 CGCATGAT ACCGGTTA 32367 0.022033 0.000024
4 CGCATGAT CGATGTTC 31099 0.021170 0.000023
4 CGCATGAT CTACAAGG 26126 0.017785 0.000019
4 CGCATGAT ACGAGAAC 19422 0.013221 0.000014
4 ACGGAACA GCGCATAT 14636 0.009963 0.000011
4 ACGGAACA CTGTACCA 21595 0.014700 0.000016
4 ACGGAACA GAACGGTT 15595 0.010616 0.000011
4 ACGGAACA ACCGGTTA 17018 0.011585 0.000012
4 ACGGAACA CGATGTTC 20298 0.013818 0.000015
4 ACGGAACA CTACAAGG 17833 0.012140 0.000013
4 ACGGAACA AAGCCTGA 15996 0.010889 0.000012
65 rows