File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/7e32d5d7677e79fc9adc413ada551c/output/Logs/Info.log
Size
4.2 KB
Attempt
2026-06-08T06:04:10Z thread 415 Sample sheet being processed by common lib? Yes
2026-06-08T06:04:10Z thread 415 SampleSheet Settings: 
2026-06-08T06:04:10Z thread 415   FastqCompressionFormat = gzip
2026-06-08T06:04:10Z thread 415   NoLaneSplitting = FALSE
2026-06-08T06:04:10Z thread 415   OverrideCycles = Y151;I8;I8;Y151
2026-06-08T06:04:10Z thread 415   SoftwareVersion = 4.3.6
2026-06-08T06:04:10Z thread 415 
2026-06-08T06:04:10Z thread 415 Index Read 2 (i5): The barcode and UMI outputs will be processed and output in Reverse Complement of Sample Sheet inputs. OverrideCycles bases for this read will be interpreted in reverse.
2026-06-08T06:04:10Z thread 415 shared-thread-linux-native-asio output is disabled
2026-06-08T06:04:10Z thread 415 bcl-convert Version 4.4.6
2026-06-08T06:04:10Z thread 415 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-08T06:04:10Z thread 415 Command Line: --tiles s_6 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
2026-06-08T06:04:10Z thread 415 Conversion Begins.
2026-06-08T06:04:10Z thread 415 Input BCL Information:
2026-06-08T06:04:10Z thread 415     Read Structure: 2026-06-08T06:04:10Z thread 415 Y1512026-06-08T06:04:10Z thread 415 ;2026-06-08T06:04:10Z thread 415 I82026-06-08T06:04:10Z thread 415 ;2026-06-08T06:04:10Z thread 415 I82026-06-08T06:04:10Z thread 415 ;2026-06-08T06:04:10Z thread 415 Y1512026-06-08T06:04:10Z thread 415 
2026-06-08T06:04:10Z thread 415     RunInfo.xml file lists: 8 lanes, 3136 tiles
2026-06-08T06:04:10Z thread 415     BCL file format: cbcl
2026-06-08T06:04:10Z thread 415     Positions file format: slocs
2026-06-08T06:04:10Z thread 415     Filter file format: filter
2026-06-08T06:04:10Z thread 415 Conversion Information:
2026-06-08T06:04:10Z thread 415     Tile filtering: converting 392/3136 tiles
2026-06-08T06:04:10Z thread 415     Sample Count for Lane 1: 8
2026-06-08T06:04:10Z thread 415     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:04:10Z thread 415     Sample Count for Lane 2: 8
2026-06-08T06:04:10Z thread 415     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:04:10Z thread 415     Sample Count for Lane 3: 8
2026-06-08T06:04:10Z thread 415     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:04:10Z thread 415     Sample Count for Lane 4: 8
2026-06-08T06:04:10Z thread 415     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:04:10Z thread 415     Sample Count for Lane 5: 8
2026-06-08T06:04:10Z thread 415     Lane 5 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:04:10Z thread 415     Sample Count for Lane 6: 8
2026-06-08T06:04:10Z thread 415     Sample Count for Lane 7: 8
2026-06-08T06:04:10Z thread 415     Lane 7 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:04:10Z thread 415     Sample Count for Lane 8: 8
2026-06-08T06:04:10Z thread 415     Lane 8 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:04:10Z thread 415     Expected number of sample FASTQ files to be created: 16
2026-06-08T06:04:10Z thread 415 # CPU hw threads available: 64
2026-06-08T06:04:10Z thread 415 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-08T06:04:10Z thread 415 SW compressors: 64
2026-06-08T06:04:10Z thread 415 SW decompressors: 32
2026-06-08T06:04:10Z thread 415 SW FASTQ compression level: 1
2026-06-08T06:07:51Z thread 415 Lane 6 Post-run Information:
2026-06-08T06:07:51Z thread 415     Total clusters: 1319064061
2026-06-08T06:07:51Z thread 415     Total Genomic Reads: 2638128122
2026-06-08T06:07:51Z thread 415     Total Genomic Input Gigabases 398.36
2026-06-08T06:07:51Z thread 415     Minimum reads for a sample: 91238494
2026-06-08T06:07:51Z thread 415     Maximum reads for a sample: 149760454
2026-06-08T06:07:51Z thread 415     Average reads per sample: 125124894.50
2026-06-08T06:07:51Z thread 415     Undetermined reads: 1637128966
2026-06-08T06:07:52Z thread 415 Conversion Complete.