File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/9f812312b70a56aba62781bb0acbd8/.command.log
Size
4.1 KB
Task
NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:FLOWCELL_QC (20251117_LH00166_0206_A2327GFLT3)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/ae23c7b81c9fabcaca7e2245c3faad/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/38f47aab8942e672fe36c4c283adfc/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/68dd9122e18b73b16022014f7a02f6/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/illumina_run_folders/data/20251117_LH00166_0206_A2327GFLT3/InterOp/ExtendedTileMetricsOut.bin
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/68dd9122e18b73b16022014f7a02f6/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/1e54124874a394ab205f9a5ade3ce9/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/illumina_run_folders/data/20251117_LH00166_0206_A2327GFLT3/InterOp/EmpiricalPhasingMetricsOut.bin
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/9f812312b70a56aba62781bb0acbd8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/ae23c7b81c9fabcaca7e2245c3faad/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/68dd9122e18b73b16022014f7a02f6/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/96c4794d054bfa62dbbacb715230ca/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/c7c1cdc52ab939b91d43282990ae8e/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/38f47aab8942e672fe36c4c283adfc/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/illumina_run_folders/data/20251117_LH00166_0206_A2327GFLT3/InterOp/TileMetricsOut.bin
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/96c4794d054bfa62dbbacb715230ca/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/7e32d5d7677e79fc9adc413ada551c/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/7e32d5d7677e79fc9adc413ada551c/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/38f47aab8942e672fe36c4c283adfc/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/7e32d5d7677e79fc9adc413ada551c/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/1e54124874a394ab205f9a5ade3ce9/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/ae23c7b81c9fabcaca7e2245c3faad/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/56aa5f9e5bc229c8fffb15d18873ed/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/56aa5f9e5bc229c8fffb15d18873ed/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/c7c1cdc52ab939b91d43282990ae8e/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/c7c1cdc52ab939b91d43282990ae8e/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/96c4794d054bfa62dbbacb715230ca/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/56aa5f9e5bc229c8fffb15d18873ed/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/9f812312b70a56aba62781bb0acbd8/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/illumina_run_folders/data/20251117_LH00166_0206_A2327GFLT3/RunInfo.xml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/1e54124874a394ab205f9a5ade3ce9/output/Reports/Index_Hopping_Counts.csv
==> STAGING COMPLETE (30 inputs)

Wrote flowcell_qc.csv with 13/13 metrics populated