File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/38f47aab8942e672fe36c4c283adfc/output/Logs/Info.log
Size
4.2 KB
Attempt
2026-06-08T06:03:57Z thread 420 Sample sheet being processed by common lib? Yes
2026-06-08T06:03:57Z thread 420 SampleSheet Settings: 
2026-06-08T06:03:57Z thread 420   FastqCompressionFormat = gzip
2026-06-08T06:03:57Z thread 420   NoLaneSplitting = FALSE
2026-06-08T06:03:57Z thread 420   OverrideCycles = Y151;I8;I8;Y151
2026-06-08T06:03:57Z thread 420   SoftwareVersion = 4.3.6
2026-06-08T06:03:57Z thread 420 
2026-06-08T06:03:57Z thread 420 Index Read 2 (i5): The barcode and UMI outputs will be processed and output in Reverse Complement of Sample Sheet inputs. OverrideCycles bases for this read will be interpreted in reverse.
2026-06-08T06:03:57Z thread 420 shared-thread-linux-native-asio output is disabled
2026-06-08T06:03:57Z thread 420 bcl-convert Version 4.4.6
2026-06-08T06:03:57Z thread 420 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-08T06:03:57Z thread 420 Command Line: --tiles s_8 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
2026-06-08T06:03:57Z thread 420 Conversion Begins.
2026-06-08T06:03:57Z thread 420 Input BCL Information:
2026-06-08T06:03:57Z thread 420     Read Structure: 2026-06-08T06:03:57Z thread 420 Y1512026-06-08T06:03:57Z thread 420 ;2026-06-08T06:03:57Z thread 420 I82026-06-08T06:03:57Z thread 420 ;2026-06-08T06:03:57Z thread 420 I82026-06-08T06:03:57Z thread 420 ;2026-06-08T06:03:57Z thread 420 Y1512026-06-08T06:03:57Z thread 420 
2026-06-08T06:03:57Z thread 420     RunInfo.xml file lists: 8 lanes, 3136 tiles
2026-06-08T06:03:57Z thread 420     BCL file format: cbcl
2026-06-08T06:03:57Z thread 420     Positions file format: slocs
2026-06-08T06:03:57Z thread 420     Filter file format: filter
2026-06-08T06:03:57Z thread 420 Conversion Information:
2026-06-08T06:03:57Z thread 420     Tile filtering: converting 392/3136 tiles
2026-06-08T06:03:57Z thread 420     Sample Count for Lane 1: 8
2026-06-08T06:03:57Z thread 420     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:03:57Z thread 420     Sample Count for Lane 2: 8
2026-06-08T06:03:57Z thread 420     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:03:57Z thread 420     Sample Count for Lane 3: 8
2026-06-08T06:03:57Z thread 420     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:03:57Z thread 420     Sample Count for Lane 4: 8
2026-06-08T06:03:57Z thread 420     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:03:57Z thread 420     Sample Count for Lane 5: 8
2026-06-08T06:03:57Z thread 420     Lane 5 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:03:57Z thread 420     Sample Count for Lane 6: 8
2026-06-08T06:03:57Z thread 420     Lane 6 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:03:57Z thread 420     Sample Count for Lane 7: 8
2026-06-08T06:03:57Z thread 420     Lane 7 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:03:57Z thread 420     Sample Count for Lane 8: 8
2026-06-08T06:03:57Z thread 420     Expected number of sample FASTQ files to be created: 16
2026-06-08T06:03:57Z thread 420 # CPU hw threads available: 64
2026-06-08T06:03:57Z thread 420 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-08T06:03:57Z thread 420 SW compressors: 64
2026-06-08T06:03:57Z thread 420 SW decompressors: 32
2026-06-08T06:03:57Z thread 420 SW FASTQ compression level: 1
2026-06-08T06:07:48Z thread 420 Lane 8 Post-run Information:
2026-06-08T06:07:48Z thread 420     Total clusters: 1341875953
2026-06-08T06:07:48Z thread 420     Total Genomic Reads: 2683751906
2026-06-08T06:07:48Z thread 420     Total Genomic Input Gigabases 405.25
2026-06-08T06:07:48Z thread 420     Minimum reads for a sample: 92702058
2026-06-08T06:07:48Z thread 420     Maximum reads for a sample: 151188052
2026-06-08T06:07:48Z thread 420     Average reads per sample: 126769950.25
2026-06-08T06:07:48Z thread 420     Undetermined reads: 1669592304
2026-06-08T06:07:48Z thread 420 Conversion Complete.