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rna_s1806.FusionInspector.fusions.abridged.tsv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_rna_exp0032/A2327GFLT3/nfcore_rnafusion_100M_starfusionFilter__cd574a28--20260225-001000/fusioninspector/rna_s1806.FusionInspector.fusions.abridged.tsv
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27.8 KB
Workflow Run
cgp_rna_exp0032_cd574a28
Published
Feb 26, 2026 1:13 AM

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#FusionName JunctionReadCount SpanningFragCount est_J est_S LeftGene LeftLocalBreakpoint LeftBreakpoint RightGene RightLocalBreakpoint RightBreakpoint SpliceType LargeAnchorSupport NumCounterFusionLeft NumCounterFusionRight FAR_left FAR_right LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy FFPM microh_brkpt_dist num_microh_near_brkpt
TMPRSS2--ERG 116 15 116.00 9.83 TMPRSS2^ENSG00000184012.14 10965 chr21:41488394:- ERG^ENSG00000157554.19 36539 chr21:38445621:- ONLY_REF_SPLICE YES 1 14 66.00 8.80 GT 1.8892 AG 1.9656 1.3038 5157 0
TMPRSS2--ERG 73 13 73.00 4.85 TMPRSS2^ENSG00000184012.14 8765 chr21:41494356:- ERG^ENSG00000157554.19 38909 chr21:38403709:- ONLY_REF_SPLICE YES 66 196 1.30 0.44 GT 1.9656 AG 1.9899 0.8067 3038 0
TMPRSS2--ERG 67 0 67.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 39981 chr21:38402637:- ONLY_REF_SPLICE YES 101 333 0.67 0.20 GT 1.6895 AG 1.4295 0.6942 1435 0
TMPRSS2--ERG 61 0 61.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 37757 chr21:38423561:- ONLY_REF_SPLICE YES 101 193 0.61 0.32 GT 1.6895 AG 1.9899 0.6321 1057 0
TMPRSS2--ERG 58 1 58.00 0.19 TMPRSS2^ENSG00000184012.14 7359 chr21:41498119:- ERG^ENSG00000157554.19 36539 chr21:38445621:- ONLY_REF_SPLICE YES 114 14 0.52 4.00 GT 1.9656 AG 1.9656 0.603 2413 0
TMPRSS2--ERG 51 0 51.00 0.00 TMPRSS2^ENSG00000184012.14 7359 chr21:41498119:- ERG^ENSG00000157554.19 39981 chr21:38402637:- ONLY_REF_SPLICE YES 114 333 0.45 0.16 GT 1.9656 AG 1.4295 0.5284 1893 0
TMPRSS2--ERG 39 1 39.00 0.13 TMPRSS2^ENSG00000184012.14 7359 chr21:41498119:- ERG^ENSG00000157554.19 38909 chr21:38403709:- ONLY_REF_SPLICE YES 114 196 0.36 0.21 GT 1.9656 AG 1.9899 0.4054 1634 0
TMPRSS2--ERG 29 0 29.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 38909 chr21:38403709:- ONLY_REF_SPLICE YES 101 196 0.29 0.15 GT 1.6895 AG 1.9899 0.3005 1071 0
TMPRSS2--ERG 17 0 17.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 36539 chr21:38445621:- ONLY_REF_SPLICE YES 101 14 0.18 1.20 GT 1.6895 AG 1.9656 0.1761 350 0
EWSR1--ERG 108 8 108.00 5.68 EWSR1^ENSG00000182944.18 11554 chr22:29287134:+ ERG^ENSG00000157554.19 44967 chr21:38383923:- ONLY_REF_SPLICE YES 1865 294 0.06 0.40 GT 1.8062 AG 1.9086 1.1779 1191 0
EWSR1--ERG 40 12 40.00 6.32 EWSR1^ENSG00000182944.18 11554 chr22:29287134:+ ERG^ENSG00000157554.19 43919 chr21:38391042:- ONLY_REF_SPLICE YES 1865 321 0.03 0.16 GT 1.8062 AG 1.8062 0.48 1677 0
KIAA1549--BRAF 79 15 79.00 3.71 KIAA1549^ENSG00000122778.10 14152 chr7:138894342:- BRAF^ENSG00000157764.14 50867 chr7:140787584:- ONLY_REF_SPLICE YES 180 792 0.52 0.12 GT 1.8256 AG 1.9329 0.857 96 1
KIAA1549--BRAF 56 44 56.00 13.35 KIAA1549^ENSG00000122778.10 21367 chr7:138861139:- BRAF^ENSG00000157764.14 50867 chr7:140787584:- ONLY_REF_SPLICE YES 145 792 0.69 0.13 GT 1.9086 AG 1.9329 0.7185 1130 0
KIAA1549--BRAF 55 46 55.00 15.58 KIAA1549^ENSG00000122778.10 24718 chr7:138840133:- BRAF^ENSG00000157764.14 50867 chr7:140787584:- ONLY_REF_SPLICE YES 80 792 1.26 0.13 GT 1.4566 AG 1.9329 0.7313 2455 0
KIAA1549--BRAF 49 26 49.00 4.45 KIAA1549^ENSG00000122778.10 18895 chr7:138869538:- BRAF^ENSG00000157764.14 50867 chr7:140787584:- ONLY_REF_SPLICE YES 364 792 0.21 0.10 GT 1.5219 AG 1.9329 0.5538 2474 0
KIAA1549--BRAF 50 8 50.00 1.14 KIAA1549^ENSG00000122778.10 17671 chr7:138871157:- BRAF^ENSG00000157764.14 53331 chr7:140783157:- ONLY_REF_SPLICE YES 205 1136 0.29 0.05 GT 1.4256 AG 1.9656 0.5299 2412 0
KIAA1549--BRAF 47 13 47.00 2.35 KIAA1549^ENSG00000122778.10 21367 chr7:138861139:- BRAF^ENSG00000157764.14 53331 chr7:140783157:- ONLY_REF_SPLICE YES 145 1136 0.42 0.05 GT 1.9086 AG 1.9656 0.5113 3575 0
KIAA1549--BRAF 42 32 42.00 5.41 KIAA1549^ENSG00000122778.10 20049 chr7:138867975:- BRAF^ENSG00000157764.14 50867 chr7:140787584:- ONLY_REF_SPLICE YES 247 792 0.30 0.09 GT 1.9656 AG 1.9329 0.4913 1530 0
EML4--ALK 73 11 73.00 5.54 EML4^ENSG00000143924.19 20963 chr2:42304551:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 1209 16 0.07 5.00 GT 1.8256 AG 1.9086 0.8138 2703 0
EML4--ALK 58 3 58.00 0.53 EML4^ENSG00000143924.19 18552 chr2:42301392:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 510 16 0.12 3.65 GT 1.2310 AG 1.9086 0.6065 1107 0
EML4--ALK 56 3 56.00 0.51 EML4^ENSG00000143924.19 3621 chr2:42245687:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 1269 16 0.05 3.53 GT 1.9219 AG 1.9086 0.5855 216 0
EML4--ALK 51 3 51.00 0.47 EML4^ENSG00000143924.19 8300 chr2:42264731:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 380 16 0.14 3.24 GT 1.7819 AG 1.9086 0.5333 1031 0
EML4--ALK 40 12 40.00 3.95 EML4^ENSG00000143924.19 25702 chr2:42325554:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 706 16 0.07 3.12 GT 1.7056 AG 1.9086 0.4554 1160 0
EML4--ALK 33 3 33.00 0.30 EML4^ENSG00000143924.19 17400 chr2:42295516:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 482 16 0.08 2.18 GT 1.6895 AG 1.9086 0.345 1550 0
EML4--ALK 7 12 7.00 0.69 EML4^ENSG00000143924.19 25702 chr2:42325554:+ ALK^ENSG00000171094.18 34064 chr2:29921586:- ONLY_REF_SPLICE YES 706 0 0.03 20.00 GT 1.7056 GC 1.9329 0.0796 667 0
FGFR2--BICC1 70 2 70.00 2.00 FGFR2^ENSG00000066468.23 29010 chr10:121483698:- BICC1^ENSG00000122870.12 40783 chr10:58702074:+ ONLY_REF_SPLICE YES 12 1 5.62 36.50 GT 1.8323 AG 1.7968 0.746 1673 0
AFAP1--NTRK2 63 11 63.00 11.00 AFAP1^ENSG00000196526.10 21829 chr4:7778762:- NTRK2^ENSG00000148053.17 46551 chr9:84751986:+ ONLY_REF_SPLICE YES 10 226 6.82 0.33 GT 1.8323 AG 1.7056 0.7668 1214 0
TRIM33--RET 64 2 64.00 2.00 TRIM33^ENSG00000197323.12 15635 chr1:114406941:- RET^ENSG00000165731.20 43081 chr10:43116584:+ ONLY_REF_SPLICE YES 425 7 0.16 8.38 GT 1.8892 AG 1.8323 0.6838 1717 0
TPM3--NTRK1 60 10 60.00 5.23 TPM3^ENSG00000143549.21 13389 chr1:154170400:- NTRK1^ENSG00000198400.13 41882 chr1:156874383:+ ONLY_REF_SPLICE YES 3123 2 0.02 23.67 GT 1.9329 AG 1.5058 0.6759 168 0
TPM3--NTRK1 47 6 47.00 1.48 TPM3^ENSG00000143549.21 13140 chr1:154170649:- NTRK1^ENSG00000198400.13 41882 chr1:156874383:+ ONLY_REF_SPLICE YES 3663 2 0.01 18.00 GT 1.7968 AG 1.5058 0.5023 276 0
TPM3--NTRK1 42 6 42.00 1.32 TPM3^ENSG00000143549.21 13140 chr1:154170649:- NTRK1^ENSG00000198400.13 42070 chr1:156874571:+ ONLY_REF_SPLICE YES 3663 11 0.01 4.08 GT 1.7968 AG 1.6895 0.4489 417 0
TPM3--NTRK1 38 8 38.00 1.98 TPM3^ENSG00000143549.21 13389 chr1:154170400:- NTRK1^ENSG00000198400.13 42070 chr1:156874571:+ ONLY_REF_SPLICE YES 3123 11 0.02 3.92 GT 1.9329 AG 1.6895 0.4142 355 0
NPM1--ALK 60 0 60.00 0.00 NPM1^ENSG00000181163.14 5684 chr5:171391799:+ ALK^ENSG00000171094.18 43573 chr2:29223528:- ONLY_REF_SPLICE YES 5810 16 0.01 3.59 GT 1.9656 AG 1.9086 0.6217 1186 0
NPM1--ALK 15 1 15.00 1.00 NPM1^ENSG00000181163.14 6701 chr5:171392816:+ ALK^ENSG00000171094.18 18634 chr2:29921586:- ONLY_REF_SPLICE YES 5490 0 0.00 17.00 GT 1.9329 GC 1.9329 0.1658 33 1
FGFR3--TACC3 58 7 58.00 2.41 FGFR3^ENSG00000068078.20 11811 chr4:1808867:+ TACC3^ENSG00000013810.20 22437 chr4:1731172:+ ONLY_REF_SPLICE YES 4 1516 13.20 0.04 CC 1.9899 AG 1.9086 0.626 1818 0
FGFR3--TACC3 52 5 52.00 1.23 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 25486 chr4:1737598:+ ONLY_REF_SPLICE YES 23 959 2.42 0.06 GT 1.8892 AG 1.6402 0.5515 91 1
FGFR3--TACC3 35 6 35.00 1.05 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 24025 chr4:1735731:+ ONLY_REF_SPLICE YES 23 1025 1.75 0.04 GT 1.8892 AG 1.9656 0.3736 1548 0
FGFR3--TACC3 34 6 34.00 1.02 FGFR3^ENSG00000068078.20 11811 chr4:1808867:+ TACC3^ENSG00000013810.20 23567 chr4:1735273:+ ONLY_REF_SPLICE YES 4 1191 8.20 0.03 CC 1.9899 AG 1.8892 0.3629 2289 0
FGFR3--TACC3 30 8 30.00 2.29 FGFR3^ENSG00000068078.20 11812 chr4:1808868:+ TACC3^ENSG00000013810.20 19989 chr4:1727709:+ INCL_NON_REF_SPLICE YES 3 891 9.75 0.04 CT 1.9656 GC 1.8323 0.3345 272 0
TPM3--ALK 59 2 59.00 1.66 TPM3^ENSG00000143549.21 13389 chr1:154170400:- ALK^ENSG00000171094.18 54468 chr2:29223528:- ONLY_REF_SPLICE YES 3122 16 0.02 3.65 GT 1.9329 AG 1.9086 0.6285 949 0
TPM3--ALK 12 2 12.00 0.34 TPM3^ENSG00000143549.21 13389 chr1:154170400:- ALK^ENSG00000171094.18 29529 chr2:29921586:- ONLY_REF_SPLICE YES 3122 0 0.00 15.00 GT 1.9329 GC 1.9329 0.1278 66 1
MGA--NUTM1 58 3 58.00 3.00 MGA^ENSG00000174197.16 31460 chr15:41762362:+ NUTM1^ENSG00000184507.16 46224 chr15:34347969:+ ONLY_REF_SPLICE YES 170 6 0.36 8.86 GT 1.5656 AG 1.9329 0.6321 341 0
BRD4--NUTM1 57 5 57.00 5.00 BRD4^ENSG00000141867.19 17859 chr19:15254152:- NUTM1^ENSG00000184507.16 36973 chr15:34347969:+ ONLY_REF_SPLICE YES 1893 6 0.03 9.00 GT 1.7465 AG 1.9329 0.6424 762 0
PML--RARA 55 12 55.00 9.55 PML^ENSG00000140464.20 12045 chr15:74034530:+ RARA^ENSG00000131759.18 33708 chr17:40348316:+ ONLY_REF_SPLICE YES 1989 736 0.03 0.09 GT 1.9329 AG 1.9086 0.6689 183 0
PML--RARA 42 6 42.00 2.45 PML^ENSG00000140464.20 10929 chr15:74033414:+ RARA^ENSG00000131759.18 33708 chr17:40348316:+ ONLY_REF_SPLICE YES 1771 736 0.03 0.07 GT 1.3383 AG 1.9086 0.4606 1296 0
SDC4--ROS1 56 6 56.00 3.06 SDC4^ENSG00000124145.6 4485 chr20:45330366:- ROS1^ENSG00000047936.11 45524 chr6:117326414:- ONLY_REF_SPLICE YES 164 210 0.38 0.30 GT 1.7968 AG 1.7232 0.6119 1743 0
SDC4--ROS1 41 20 41.00 15.67 SDC4^ENSG00000124145.6 4485 chr20:45330366:- ROS1^ENSG00000047936.11 42328 chr6:117337340:- ONLY_REF_SPLICE YES 164 13 0.38 4.43 GT 1.7968 AG 1.7465 0.5872 1426 0
SDC4--ROS1 25 4 25.00 1.27 SDC4^ENSG00000124145.6 2239 chr20:45335782:- ROS1^ENSG00000047936.11 42328 chr6:117337340:- ONLY_REF_SPLICE YES 149 13 0.20 2.14 GT 1.8892 AG 1.7465 0.2722 2052 0
TRIM24--BRAF 55 10 55.00 5.81 TRIM24^ENSG00000122779.18 14326 chr7:138567654:+ BRAF^ENSG00000157764.14 47905 chr7:140787584:- ONLY_REF_SPLICE YES 331 792 0.20 0.08 GT 1.6402 AG 1.9329 0.6301 1536 0
TRIM24--BRAF 35 3 35.00 0.81 TRIM24^ENSG00000122779.18 10753 chr7:138551180:+ BRAF^ENSG00000157764.14 50369 chr7:140783157:- ONLY_REF_SPLICE YES 511 1137 0.08 0.03 GT 1.7819 AG 1.9656 0.3711 1323 0
TRIM24--BRAF 32 10 32.00 3.38 TRIM24^ENSG00000122779.18 12022 chr7:138554966:+ BRAF^ENSG00000157764.14 47905 chr7:140787584:- ONLY_REF_SPLICE YES 387 792 0.11 0.05 GT 1.7819 AG 1.9329 0.3666 1733 0
CCDC6--RET 56 5 56.00 5.00 CCDC6^ENSG00000108091.11 1435 chr10:59906122:- RET^ENSG00000165731.20 31587 chr10:43116584:+ ONLY_REF_SPLICE YES 877 7 0.07 7.75 GT 1.8892 AG 1.8323 0.632 2092 0
FGFR2--TACC3 56 3 56.00 2.64 FGFR2^ENSG00000066468.23 29010 chr10:121483698:- TACC3^ENSG00000013810.20 41679 chr4:1727708:+ ONLY_REF_SPLICE YES 13 852 4.29 0.07 GT 1.8323 AG 1.7056 0.6076 1192 0
FGFR2--TACC3 32 1 32.00 0.36 FGFR2^ENSG00000066468.23 29010 chr10:121483698:- TACC3^ENSG00000013810.20 47177 chr4:1737598:+ ONLY_REF_SPLICE YES 13 959 2.43 0.04 GT 1.8323 AG 1.6402 0.3353 1795 0
FGFR2--TACC3 21 0 21.00 0.00 FGFR2^ENSG00000066468.23 29010 chr10:121483698:- TACC3^ENSG00000013810.20 49281 chr4:1739702:+ ONLY_REF_SPLICE YES 13 1328 1.57 0.02 GT 1.8323 AG 1.7819 0.2176 1188 0
PAX8--PPARG 54 5 54.00 5.00 PAX8^ENSG00000125618.18 10865 chr2:113227155:- PPARG^ENSG00000132170.23 26778 chr3:12312380:+ ONLY_REF_SPLICE YES 86 2 0.69 20.00 GT 1.8295 AG 1.8295 0.6113 3874 0
SLC34A2--ROS1 53 7 53.00 6.41 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 53638 chr6:117337340:- ONLY_REF_SPLICE YES 0 12 61.00 4.69 GT 1.8892 AG 1.7465 0.6156 2262 0
SLC34A2--ROS1 24 2 24.00 0.59 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 56834 chr6:117326414:- ONLY_REF_SPLICE YES 0 210 27.00 0.13 GT 1.8892 AG 1.7232 0.2548 183 0
FGFR1--TACC1 51 7 51.00 7.00 FGFR1^ENSG00000077782.21 27563 chr8:38413918:- TACC1^ENSG00000147526.20 55170 chr8:38836162:+ ONLY_REF_SPLICE YES 704 2446 0.08 0.02 GT 1.8892 AG 1.7465 0.6009 301 0
GOPC--ROS1 50 4 50.00 4.00 GOPC^ENSG00000047932.14 9512 chr6:117566854:- ROS1^ENSG00000047936.11 48343 chr6:117337340:- ONLY_REF_SPLICE YES 361 12 0.15 4.23 GT 1.7968 AG 1.7465 0.5595 1852 0
NSD3--NUTM1 51 0 51.00 0.00 NSD3^ENSG00000147548.17 11443 chr8:38326730:- NUTM1^ENSG00000184507.16 43858 chr15:34347969:+ ONLY_REF_SPLICE YES 988 6 0.05 7.43 GT 1.9656 AG 1.9329 0.5284 1178 0
BRD3--NUTM1 49 0 49.00 0.00 BRD3^ENSG00000169925.17 12605 chr9:134040034:- NUTM1^ENSG00000184507.16 28100 chr15:34353736:+ ONLY_REF_SPLICE YES 217 13 0.23 3.57 GT 1.5219 AG 1.7819 0.5077 1018 0
BRD3--NUTM1 1 0 1.00 0.00 BRD3^ENSG00000169925.17 14165 chr9:134036032:- NUTM1^ENSG00000184507.16 25262 chr15:34347969:+ ONLY_REF_SPLICE YES 309 6 0.01 0.29 GT 1.9219 AG 1.9329 0.0104 2423 0
SND1--BRAF 48 3 48.00 3.00 SND1^ENSG00000197157.11 24964 chr7:127991056:+ BRAF^ENSG00000157764.14 55981 chr7:140787584:- ONLY_REF_SPLICE YES 1629 792 0.03 0.07 GT 1.8295 AG 1.9329 0.5285 1527 0
TPR--NTRK1 48 3 48.00 3.00 TPR^ENSG00000047410.14 8773 chr1:186360765:- NTRK1^ENSG00000198400.13 62972 chr1:156874571:+ ONLY_REF_SPLICE YES 924 11 0.06 4.33 GT 1.6402 AG 1.6895 0.5285 2068 0
CD74--ROS1 44 4 44.00 1.27 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 47540 chr6:117326414:- ONLY_REF_SPLICE YES 11952 210 0.00 0.23 GT 1.7819 AG 1.7232 0.4691 1406 0
CD74--ROS1 37 6 37.00 2.19 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 44344 chr6:117337340:- ONLY_REF_SPLICE YES 11952 12 0.00 3.38 GT 1.7819 AG 1.7465 0.4061 1261 0
CD74--ROS1 35 3 35.00 0.70 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 48731 chr6:117324415:- ONLY_REF_SPLICE YES 11952 218 0.00 0.18 GT 1.7819 AG 1.7465 0.37 2407 0
CD74--ROS1 23 14 23.00 9.84 CD74^ENSG00000019582.16 7107 chr5:150402563:- ROS1^ENSG00000047936.11 44344 chr6:117337340:- ONLY_REF_SPLICE YES 11681 12 0.00 2.92 GT 1.8892 AG 1.7465 0.3403 1566 0
EWSR1--FLI1 42 1 42.00 0.55 EWSR1^ENSG00000182944.18 11554 chr22:29287134:+ FLI1^ENSG00000151702.17 37165 chr11:128805366:+ ONLY_REF_SPLICE YES 1868 788 0.02 0.06 GT 1.8062 AG 1.7819 0.4409 1466 0
EWSR1--FLI1 19 3 19.00 1.86 EWSR1^ENSG00000182944.18 22093 chr22:29300521:+ FLI1^ENSG00000151702.17 33405 chr11:128772782:+ ONLY_REF_SPLICE YES 4 709 4.60 0.03 GT 1.3996 AG 1.8892 0.2162 692 0
EWSR1--FLI1 14 2 14.00 0.60 EWSR1^ENSG00000182944.18 11554 chr22:29287134:+ FLI1^ENSG00000151702.17 34609 chr11:128781958:+ ONLY_REF_SPLICE YES 1868 733 0.01 0.02 GT 1.8062 AG 1.8256 0.1513 995 0
CLTC--ALK 41 1 41.00 0.85 CLTC^ENSG00000141367.12 31398 chr17:59690711:+ ALK^ENSG00000171094.18 63682 chr2:29223528:- ONLY_REF_SPLICE YES 1307 16 0.03 2.53 GT 1.8892 AG 1.9086 0.4336 738 0
CLTC--ALK 6 2 6.00 1.15 CLTC^ENSG00000141367.12 31398 chr17:59690711:+ ALK^ENSG00000171094.18 38743 chr2:29921586:- ONLY_REF_SPLICE YES 1307 0 0.01 9.00 GT 1.8892 GC 1.9329 0.0741 2756 0
COL1A1--PDGFB 40 1 40.00 1.00 COL1A1^ENSG00000108821.14 16097 chr17:50186317:- PDGFB^ENSG00000100311.17 25647 chr22:39235874:- ONLY_REF_SPLICE YES 28 17 1.45 2.33 GT 1.9899 AG 1.7968 0.4249 1271 0
NAB2--STAT6 37 6 37.00 6.00 NAB2^ENSG00000166886.13 4786 chr12:57093598:+ STAT6^ENSG00000166888.12 22861 chr12:57099440:- ONLY_REF_SPLICE YES 1121 1829 0.04 0.02 GT 1.8295 AG 1.9656 0.4456 579 0
PRKAR1A--RET 38 1 38.00 1.00 PRKAR1A^ENSG00000108946.15 8644 chr17:68525912:+ RET^ENSG00000165731.20 32187 chr10:43116584:+ ONLY_REF_SPLICE YES 1639 7 0.02 5.00 GT 1.9219 AG 1.8323 0.4041 2585 0
FUS--ERG 36 0 36.00 0.00 FUS^ENSG00000089280.19 11302 chr16:31191609:+ ERG^ENSG00000157554.19 24350 chr21:38445617:- INCL_NON_REF_SPLICE YES 0 22 37.00 1.61 GT 1.1589 AG 1.9219 0.373 3611 0
NCOA4--RET 34 3 34.00 3.00 NCOA4^ENSG00000266412.6 11059 chr10:46010223:- RET^ENSG00000165731.20 30127 chr10:43116584:+ ONLY_REF_SPLICE YES 798 7 0.05 4.75 GT 1.5656 AG 1.8323 0.3834 5099 0
KIF5B--ALK 33 3 33.00 2.41 KIF5B^ENSG00000170759.11 16251 chr10:32021226:- ALK^ENSG00000171094.18 52570 chr2:29223528:- ONLY_REF_SPLICE YES 979 16 0.04 2.18 GC 1.7465 AG 1.9086 0.3669 113 0
KIF5B--ALK 8 3 8.00 0.59 KIF5B^ENSG00000170759.11 19977 chr10:32017143:- ALK^ENSG00000171094.18 27631 chr2:29921586:- ONLY_REF_SPLICE YES 716 0 0.02 12.00 GT 1.9656 GC 1.9329 0.089 636 0
TRIM24--NTRK2 32 4 32.00 4.00 TRIM24^ENSG00000122779.18 16636 chr7:138573642:+ NTRK2^ENSG00000148053.17 51924 chr9:84861040:+ ONLY_REF_SPLICE YES 438 70 0.08 0.52 GT 1.8892 AG 1.7232 0.373 1039 0
CD74--NRG1 32 3 32.00 3.00 CD74^ENSG00000019582.16 7107 chr5:150402563:- NRG1^ENSG00000157168.20 39090 chr8:32756403:+ ONLY_REF_SPLICE YES 11687 2 0.00 12.00 GT 1.8892 AG 1.3383 0.3627 1916 0
ETV6--NTRK3 30 10 30.00 10.00 ETV6^ENSG00000139083.11 11237 chr12:11869969:+ NTRK3^ENSG00000140538.16 36490 chr15:88126373:- ONLY_REF_SPLICE YES 1492 7 0.03 5.12 GT 1.7819 AG 1.9656 0.4144 3007 0
LPP--HMGA2 30 4 30.00 4.00 LPP^ENSG00000145012.13 33637 chr3:188872763:+ HMGA2^ENSG00000149948.14 53982 chr12:65824483:+ ONLY_REF_SPLICE YES 10 0 3.18 35.00 GT 1.9656 TC 1.8323 0.3522 2477 0
TCF3--PBX1 31 0 31.00 0.00 TCF3^ENSG00000071564.17 14545 chr19:1615686:- PBX1^ENSG00000185630.19 46234 chr1:164792494:+ ONLY_REF_SPLICE YES 1075 2 0.03 10.67 GT 1.4295 AG 1.8892 0.3212 1294 0
TCF3--PBX1 28 0 28.00 0.00 TCF3^ENSG00000071564.17 13409 chr19:1619111:- PBX1^ENSG00000185630.19 46234 chr1:164792494:+ ONLY_REF_SPLICE YES 1110 2 0.03 9.67 GT 1.9219 AG 1.8892 0.2901 1715 0
EZR--ROS1 28 9 28.00 9.00 EZR^ENSG00000092820.18 12698 chr6:158769326:- ROS1^ENSG00000047936.11 50185 chr6:117337340:- ONLY_REF_SPLICE YES 1834 12 0.02 2.92 GT 1.7465 AG 1.7465 0.3834 1897 0
EZR--ROS1 4 0 4.00 0.00 EZR^ENSG00000092820.18 11260 chr6:158770764:- ROS1^ENSG00000047936.11 53381 chr6:117326414:- ONLY_REF_SPLICE YES 312 211 0.02 0.02 GT 1.2867 AG 1.7232 0.0414 75 1
HEY1--NCOA2 28 8 28.00 8.00 HEY1^ENSG00000164683.18 2207 chr8:79766651:- NCOA2^ENSG00000140396.13 25820 chr8:70148483:- ONLY_REF_SPLICE YES 123 545 0.30 0.07 GT 1.3996 AG 1.8892 0.373 1409 0
MYB--NFIB 27 7 27.00 7.00 MYB^ENSG00000118513.19 19078 chr6:135219172:+ NFIB^ENSG00000147862.17 40521 chr9:14120624:- ONLY_REF_SPLICE YES 0 169 35.00 0.21 CT 1.5058 AG 1.8256 0.3523 4763 0
HIC2--PI4KA 28 1 28.00 0.74 HIC2^ENSG00000169635.10 3710 chr22:21442857:+ PI4KA^ENSG00000241973.11 47037 chr22:20734582:- INCL_NON_REF_SPLICE YES 195 364 0.15 0.08 GT 1.7465 AG 1.9656 0.2978 601 0
HIC2--PI4KA 10 1 10.00 0.26 HIC2^ENSG00000169635.10 3710 chr22:21442857:+ PI4KA^ENSG00000241973.11 47066 chr22:20734553:- ONLY_REF_SPLICE YES 195 383 0.06 0.03 GT 1.7465 AG 1.8892 0.1063 574 0
HIC2--PI4KA 7 0 7.00 0.00 HIC2^ENSG00000169635.10 3710 chr22:21442857:+ PI4KA^ENSG00000241973.11 47425 chr22:20734194:- ONLY_REF_SPLICE YES 195 344 0.04 0.02 GT 1.7465 AG 1.8062 0.0725 267 0
HIC2--PI4KA 1 0 1.00 0.00 HIC2^ENSG00000169635.10 3710 chr22:21442857:+ PI4KA^ENSG00000241973.11 47776 chr22:20733843:- ONLY_REF_SPLICE YES 195 394 0.01 0.01 GT 1.7465 AG 1.7819 0.0104 255 0
SLC45A3--ELK4 27 3 27.00 3.00 SLC45A3^ENSG00000158715.6 5142 chr1:205661861:- ELK4^ENSG00000158711.14 13380 chr1:205623891:- ONLY_REF_SPLICE YES 82 355 0.37 0.09 GT 1.5656 AG 1.9656 0.3109 1529 0
SLC45A3--ELK4 1 0 1.00 0.00 SLC45A3^ENSG00000158715.6 1116 chr1:205680394:- ELK4^ENSG00000158711.14 13380 chr1:205623891:- ONLY_REF_SPLICE YES 1 355 1.00 0.01 GT 1.5628 AG 1.9656 0.0104 3052 0
YWHAE--NUTM2B 26 2 26.00 2.00 YWHAE^ENSG00000108953.17 7788 chr17:1354211:- NUTM2B^ENSG00000188199.10 15826 chr10:79706042:+ ONLY_REF_SPLICE YES 1734 194 0.02 0.15 GT 1.8892 AG 1.9656 0.2901 1841 0
KIF5B--RET 26 1 26.00 0.53 KIF5B^ENSG00000170759.11 14629 chr10:32022848:- RET^ENSG00000165731.20 40089 chr10:43116584:+ ONLY_REF_SPLICE YES 919 7 0.03 3.50 GT 1.7819 AG 1.8323 0.2749 1676 0
KIF5B--RET 21 3 21.00 2.47 KIF5B^ENSG00000170759.11 18804 chr10:32018316:- RET^ENSG00000165731.20 40089 chr10:43116584:+ ONLY_REF_SPLICE YES 1089 7 0.02 3.12 GT 1.5546 AG 1.8323 0.2432 4064 0
ETV6--NTRK2 25 4 25.00 4.00 ETV6^ENSG00000139083.11 11237 chr12:11869969:+ NTRK2^ENSG00000148053.17 50653 chr9:84934162:+ ONLY_REF_SPLICE YES 1491 77 0.02 0.38 GT 1.7819 AG 1.9329 0.3004 1252 0
ETV6--ABL1 24 3 24.00 3.00 ETV6^ENSG00000139083.11 11237 chr12:11869969:+ ABL1^ENSG00000097007.19 25631 chr9:130854064:+ ONLY_REF_SPLICE YES 1491 323 0.02 0.09 GT 1.7819 AG 1.8892 0.2798 1152 0
FUS--DDIT3 24 0 24.00 0.00 FUS^ENSG00000089280.19 11298 chr16:31191605:+ DDIT3^ENSG00000175197.12 15431 chr12:57520514:- INCL_NON_REF_SPLICE YES 0 4 25.00 5.00 TT 1.7056 AG 1.9329 0.2487 1673 0
RANBP2--ALK 23 4 23.00 4.00 RANBP2^ENSG00000153201.16 15728 chr2:108758548:+ ALK^ENSG00000171094.18 36170 chr2:29921586:- ONLY_REF_SPLICE YES 803 0 0.03 28.00 GT 1.9329 GC 1.9329 0.2797 1252 0
TBL1XR1--TP63 24 0 24.00 0.00 TBL1XR1^ENSG00000177565.18 31430 chr3:177032971:- TP63^ENSG00000073282.14 49105 chr3:189808272:+ ONLY_REF_SPLICE YES 539 77 0.05 0.32 GT 1.9329 AG 1.7056 0.2487 1327 0
STIL--TAL1 23 1 23.00 1.00 STIL^ENSG00000123473.16 4716 chr1:47304889:- TAL1^ENSG00000162367.11 29830 chr1:47229771:- ONLY_REF_SPLICE YES 235 0 0.11 25.00 GT 1.9329 AG 1.7968 0.2487 2619 0
EWSR1--WT1 22 1 22.00 1.00 EWSR1^ENSG00000182944.18 22093 chr22:29300521:+ WT1^ENSG00000184937.16 39512 chr11:32392755:- ONLY_REF_SPLICE YES 4 95 4.80 0.25 GT 1.3996 AG 1.8892 0.2384 99 1
QKI--NTRK2 22 1 22.00 1.00 QKI^ENSG00000112531.17 13018 chr6:163563719:+ NTRK2^ENSG00000148053.17 60757 chr9:84948462:+ ONLY_REF_SPLICE YES 821 109 0.03 0.22 GT 1.7819 AG 1.9329 0.2384 1837 0
BCR--ABL1 19 2 19.00 2.00 BCR^ENSG00000186716.21 21553 chr22:23290413:+ ABL1^ENSG00000097007.19 44699 chr9:130854064:+ ONLY_REF_SPLICE YES 277 323 0.08 0.07 GT 1.8892 AG 1.8892 0.2176 503 0
RUNX1--RUNX1T1 19 1 19.00 1.00 RUNX1^ENSG00000159216.19 35856 chr21:34799301:- RUNX1T1^ENSG00000079102.16 47689 chr8:92095171:- ONLY_REF_SPLICE YES 120 3 0.17 5.25 GT 1.8892 AG 1.8892 0.2073 1273 0
RUNX1--RUNX1T1 12 0 12.00 0.00 RUNX1^ENSG00000159216.19 27252 chr21:34880557:- RUNX1T1^ENSG00000079102.16 47689 chr8:92095171:- ONLY_REF_SPLICE YES 201 3 0.06 3.25 GT 1.6895 AG 1.8892 0.1243 1615 0
ASPSCR1--TFE3 18 1 18.00 1.00 ASPSCR1^ENSG00000169696.16 23677 chr17:82017406:+ TFE3^ENSG00000068323.17 26731 chrX:49043357:- ONLY_REF_SPLICE YES 0 32 20.00 0.61 CG 1.9086 GC 1.9656 0.1969 355 0
EGFR--SEPTIN14 17 3 17.00 3.00 EGFR^ENSG00000146648.19 30734 chr7:55200413:+ SEPTIN14^ENSG00000154997.9 54769 chr7:55796092:- ONLY_REF_SPLICE YES 74 1 0.28 10.50 GT 1.8892 AG 1.9899 0.2072 658 0
PTPRK--RSPO3 16 3 16.00 3.00 PTPRK^ENSG00000152894.15 17295 chr6:128184432:- RSPO3^ENSG00000146374.14 55391 chr6:127148648:+ ONLY_REF_SPLICE YES 73 0 0.27 20.00 GT 1.7968 AG 1.9329 0.1969 1434 0
SS18--SSX1 16 3 16.00 3.00 SS18^ENSG00000141380.14 24878 chr18:26016253:- SSX1^ENSG00000126752.8 27879 chrX:48255392:+ ONLY_REF_SPLICE YES 0 0 20.00 20.00 TT 1.3383 CC 1.8295 0.1969 3029 0
ETV6--PDGFRB 16 0 16.00 0.00 ETV6^ENSG00000139083.11 18918 chr12:11895377:+ PDGFRB^ENSG00000113721.14 31979 chr5:150129968:- ONLY_REF_SPLICE YES 0 102 17.00 0.17 TA 1.5656 AG 1.9329 0.1658 2865 0
FGFR1--PLAG1 12 4 12.00 4.00 FGFR1^ENSG00000077782.21 27569 chr8:38413912:- PLAG1^ENSG00000181690.8 37316 chr8:56211267:- INCL_NON_REF_SPLICE YES 698 1 0.02 8.50 CT 1.9329 AC 1.9899 0.1657 1368 0
KMT2A--MLLT11 11 2 11.00 2.00 KMT2A^ENSG00000118058.23 54480 chr11:118526836:+ MLLT11^ENSG00000213190.4 58638 chr1:151067223:+ INCL_NON_REF_SPLICE YES 0 102 14.00 0.14 GT 1.9219 AG 1.9656 0.1347 851 0
KMT2A--SEPTIN9 10 1 10.00 1.00 KMT2A^ENSG00000118058.23 54476 chr11:118526832:+ SEPTIN9^ENSG00000184640.20 63337 chr17:77307141:+ ONLY_REF_SPLICE YES 0 298 12.00 0.04 CA 1.8892 AG 1.7819 0.114 1560 0
SLC8A1-AS1--LMO3 10 0 10.00 0.00 SLC8A1-AS1^ENSG00000227028.6 8411 chr2:39917659:+ LMO3^ENSG00000048540.15 53977 chr12:16600868:- ONLY_REF_SPLICE YES 0 183 11.00 0.06 GT 1.8892 AG 1.9086 0.1036 1256 0
DNAJB1--PRKACA 9 0 9.00 0.00 DNAJB1^ENSG00000132002.9 13592 chr19:14516466:- PRKACA^ENSG00000072062.15 25460 chr19:14107409:- ONLY_REF_SPLICE YES 512 3 0.02 2.50 GT 1.9086 AG 1.7819 0.0933 744 0
HMGA2--WIF1 8 4 8.00 4.00 HMGA2^ENSG00000149948.14 24406 chr12:65966291:+ WIF1^ENSG00000156076.10 29296 chr12:65077854:- ONLY_REF_SPLICE YES 0 0 13.00 13.00 TC 1.8892 AG 1.9086 0.1243 1500 0
TPM3--ROS1 8 3 8.00 3.00 TPM3^ENSG00000143549.21 13389 chr1:154170400:- ROS1^ENSG00000047936.11 65630 chr6:117324415:- ONLY_REF_SPLICE YES 3125 218 0.00 0.05 GT 1.9329 AG 1.7465 0.114 2234 0
ATF1--EWSR1 8 2 8.00 2.00 ATF1^ENSG00000123268.9 11425 chr12:50821162:+ EWSR1^ENSG00000182944.18 14685 chr22:29268268:+ ONLY_REF_SPLICE YES 0 12 11.00 0.85 GC 1.5058 GC 1.8323 0.1036 1487 0
EWSR1--DDIT3 8 1 8.00 1.00 EWSR1^ENSG00000182944.18 22093 chr22:29300521:+ DDIT3^ENSG00000175197.12 26230 chr12:57520514:- INCL_NON_REF_SPLICE YES 4 4 2.00 2.00 GT 1.3996 AG 1.9329 0.0933 1939 0
AC105105.1--MALT1 7 1 7.00 1.00 AC105105.1^ENSG00000267257.1 2246 chr18:58536660:+ MALT1^ENSG00000172175.15 34184 chr18:58658510:+ INCL_NON_REF_SPLICE YES 594 0 0.02 9.00 GT 1.9086 AG 1.9329 0.0829 828 0
AC105105.1--MALT1 3 0 3.00 0.00 AC105105.1^ENSG00000267257.1 2246 chr18:58536660:+ MALT1^ENSG00000172175.15 35537 chr18:58659863:+ INCL_NON_REF_SPLICE YES 594 3 0.01 1.00 GT 1.9086 AG 1.9086 0.0311 290 0
AC105105.1--MALT1 3 0 3.00 0.00 AC105105.1^ENSG00000267257.1 2246 chr18:58536660:+ MALT1^ENSG00000172175.15 56844 chr18:58681170:+ INCL_NON_REF_SPLICE YES 594 942 0.01 0.00 GT 1.9086 AG 1.9899 0.0311 227 0
FGFR3--BAIAP2L1 7 1 7.00 1.00 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ BAIAP2L1^ENSG00000006453.14 16927 chr7:98362432:- ONLY_REF_SPLICE YES 23 99 0.38 0.09 GT 1.8892 AG 1.8062 0.0829 1171 0
KMT2A--SEPTIN6 7 1 7.00 1.00 KMT2A^ENSG00000118058.23 54476 chr11:118526832:+ SEPTIN6^ENSG00000125354.24 58772 chrX:119675668:- ONLY_REF_SPLICE YES 0 1656 9.00 0.01 CA 1.8892 AG 1.8295 0.0829 1850 0
ATIC--ALK 7 0 7.00 0.00 ATIC^ENSG00000138363.15 6638 chr2:215326978:+ ALK^ENSG00000171094.18 20841 chr2:29921586:- ONLY_REF_SPLICE YES 495 0 0.02 8.00 GT 1.8892 GC 1.9329 0.0725 5014 0
CHCHD7--PLAG1 7 0 7.00 0.00 CHCHD7^ENSG00000170791.18 1152 chr8:56211837:+ PLAG1^ENSG00000181690.8 11176 chr8:56211273:- ONLY_REF_SPLICE YES 249 0 0.03 8.00 GT 1.4566 GC 1.8892 0.0725 90 1
EWSR1--POU5F1 7 0 7.00 0.00 EWSR1^ENSG00000182944.18 22093 chr22:29300521:+ POU5F1^ENSG00000204531.20 26211 chr6:31170682:- ONLY_REF_SPLICE YES 4 4 1.60 1.60 GT 1.3996 TT 1.9329 0.0725 2260 0
MAML2--CRTC1 6 4 6.00 4.00 MAML2^ENSG00000184384.14 12130 chr11:95976592:- CRTC1^ENSG00000105662.16 15133 chr19:18683686:+ INCL_NON_REF_SPLICE YES 0 9 11.00 1.10 GT 1.8062 AG 1.5546 0.1036 7654 0
JAZF1--SUZ12 6 1 6.00 1.00 JAZF1^ENSG00000153814.13 9515 chr7:27895220:- SUZ12^ENSG00000178691.11 20886 chr17:31940286:+ ONLY_REF_SPLICE YES 118 674 0.07 0.01 GT 1.8062 AG 1.8323 0.0726 1663 0
PLAG1--CTNNB1 6 1 6.00 1.00 PLAG1^ENSG00000181690.8 13352 chr8:56160909:- CTNNB1^ENSG00000168036.18 19179 chr3:41199505:+ ONLY_REF_SPLICE YES 0 61 8.00 0.13 GA 1.7819 TT 1.9329 0.0726 1626 0
CEP170P1--RAD51B 6 0 6.00 0.00 CEP170P1^ENSG00000154608.14 6653 chr4:118493845:+ RAD51B^ENSG00000182185.18 38517 chr14:68291884:+ ONLY_REF_SPLICE YES 18 303 0.37 0.02 GT 1.7232 AG 1.8892 0.0622 2312 0
CDKN2D--WDFY2 5 3 5.00 3.00 CDKN2D^ENSG00000129355.7 3505 chr19:10566460:- WDFY2^ENSG00000139668.9 16506 chr13:51675170:+ ONLY_REF_SPLICE YES 0 108 9.00 0.08 GC 1.9656 AG 1.9086 0.0829 2248 0
KMT2A--AFDN 5 2 5.00 2.00 KMT2A^ENSG00000118058.23 54476 chr11:118526832:+ AFDN^ENSG00000130396.20 59488 chr6:167864551:+ ONLY_REF_SPLICE YES 0 768 8.00 0.01 CA 1.8892 AG 1.8892 0.0725 891 0
FUS--CREB3L2 5 0 5.00 0.00 FUS^ENSG00000089280.19 11302 chr16:31191609:+ CREB3L2^ENSG00000182158.15 14303 chr7:138002082:- INCL_NON_REF_SPLICE YES 0 0 6.00 6.00 GT 1.1589 AG 1.6895 0.0518 646 0
MIER2--LINC01002 5 0 5.00 0.00 MIER2^ENSG00000105556.11 14487 chr19:307119:- LINC01002^ENSG00000282508.2 24512 chr19:239239:- ONLY_REF_SPLICE YES 369 1 0.02 3.00 GT 1.8892 AG 1.8892 0.0518 577 0
MIER2--LINC01002 2 0 2.00 0.00 MIER2^ENSG00000105556.11 13069 chr19:308577:- LINC01002^ENSG00000282508.2 24512 chr19:239239:- ONLY_REF_SPLICE YES 336 1 0.01 1.50 GT 1.8892 AG 1.8892 0.0207 1993 0
PRCC--TFE3 3 0 3.00 0.00 PRCC^ENSG00000143294.15 12284 chr1:156800815:+ TFE3^ENSG00000068323.17 15338 chrX:49043357:- ONLY_REF_SPLICE YES 0 32 4.00 0.12 CA 1.8892 GC 1.9656 0.0311 1919 0
BMP2K--ARF4 2 0 2.00 0.00 BMP2K^ENSG00000138756.19 1380 chr4:78776721:+ ARF4^ENSG00000168374.11 33702 chr3:57575673:- ONLY_REF_SPLICE YES 703 806 0.00 0.00 GT 1.8892 AG 1.9329 0.0207 2228 0
TMBIM4--ZDBF2 2 0 2.00 0.00 TMBIM4^ENSG00000155957.18 1218 chr12:66169855:- ZDBF2^ENSG00000204186.10 19179 chr2:206279540:+ ONLY_REF_SPLICE YES 428 51 0.01 0.06 GT 1.9899 AG 1.9329 0.0207 1291 0
146 rows