#FusionName	JunctionReadCount	SpanningFragCount	est_J	est_S	LeftGene	LeftLocalBreakpoint	LeftBreakpoint	RightGene	RightLocalBreakpoint	RightBreakpoint	SpliceType	LargeAnchorSupport	NumCounterFusionLeft	NumCounterFusionRight	FAR_left	FAR_right	LeftBreakDinuc	LeftBreakEntropy	RightBreakDinuc	RightBreakEntropy	FFPM	microh_brkpt_dist	num_microh_near_brkpt
EML4--ALK	90	7	90.00	2.82	EML4^ENSG00000143924.19	20963	chr2:42304551:+	ALK^ENSG00000171094.18	59003	chr2:29223528:-	ONLY_REF_SPLICE	YES	1078	18	0.09	5.16	GT	1.8256	AG	1.9086	0.9615	2703	0
EML4--ALK	76	4	76.00	0.80	EML4^ENSG00000143924.19	3621	chr2:42245687:+	ALK^ENSG00000171094.18	59003	chr2:29223528:-	ONLY_REF_SPLICE	YES	1133	18	0.07	4.26	GT	1.9219	AG	1.9086	0.7955	216	0
EML4--ALK	66	4	66.00	0.69	EML4^ENSG00000143924.19	18552	chr2:42301392:+	ALK^ENSG00000171094.18	59003	chr2:29223528:-	ONLY_REF_SPLICE	YES	446	18	0.16	3.74	GT	1.2310	AG	1.9086	0.6908	1107	0
EML4--ALK	62	4	62.00	0.65	EML4^ENSG00000143924.19	8300	chr2:42264731:+	ALK^ENSG00000171094.18	59003	chr2:29223528:-	ONLY_REF_SPLICE	YES	326	18	0.20	3.53	GT	1.7819	AG	1.9086	0.6489	1031	0
EML4--ALK	40	9	40.00	2.81	EML4^ENSG00000143924.19	25702	chr2:42325554:+	ALK^ENSG00000171094.18	59003	chr2:29223528:-	ONLY_REF_SPLICE	YES	675	18	0.07	2.63	GT	1.7056	AG	1.9086	0.4434	1160	0
EML4--ALK	30	4	30.00	0.31	EML4^ENSG00000143924.19	17400	chr2:42295516:+	ALK^ENSG00000171094.18	59003	chr2:29223528:-	ONLY_REF_SPLICE	YES	392	18	0.09	1.84	GT	1.6895	AG	1.9086	0.314	1550	0
EML4--ALK	13	9	13.00	0.91	EML4^ENSG00000143924.19	25702	chr2:42325554:+	ALK^ENSG00000171094.18	34064	chr2:29921586:-	ONLY_REF_SPLICE	YES	675	0	0.03	23.00	GT	1.7056	GC	1.9329	0.1441	667	0
TMPRSS2--ERG	86	18	86.00	11.97	TMPRSS2^ENSG00000184012.14	10965	chr21:41488394:-	ERG^ENSG00000157554.19	36539	chr21:38445621:-	ONLY_REF_SPLICE	YES	2	11	35.00	8.75	GT	1.8892	AG	1.9656	1.0148	5157	0
TMPRSS2--ERG	56	15	56.00	5.64	TMPRSS2^ENSG00000184012.14	8765	chr21:41494356:-	ERG^ENSG00000157554.19	38909	chr21:38403709:-	ONLY_REF_SPLICE	YES	39	161	1.80	0.44	GT	1.9656	AG	1.9899	0.6385	3038	0
TMPRSS2--ERG	55	0	55.00	0.00	TMPRSS2^ENSG00000184012.14	4652	chr21:41508081:-	ERG^ENSG00000157554.19	39981	chr21:38402637:-	ONLY_REF_SPLICE	YES	42	307	1.30	0.18	GT	1.6895	AG	1.4295	0.5697	1435	0
TMPRSS2--ERG	52	1	52.00	0.20	TMPRSS2^ENSG00000184012.14	7359	chr21:41498119:-	ERG^ENSG00000157554.19	36539	chr21:38445621:-	ONLY_REF_SPLICE	YES	51	11	1.04	4.50	GT	1.9656	AG	1.9656	0.5407	2413	0
TMPRSS2--ERG	48	1	48.00	0.19	TMPRSS2^ENSG00000184012.14	7359	chr21:41498119:-	ERG^ENSG00000157554.19	38909	chr21:38403709:-	ONLY_REF_SPLICE	YES	51	161	0.96	0.31	GT	1.9656	AG	1.9899	0.4992	1634	0
TMPRSS2--ERG	39	0	39.00	0.00	TMPRSS2^ENSG00000184012.14	4652	chr21:41508081:-	ERG^ENSG00000157554.19	37757	chr21:38423561:-	ONLY_REF_SPLICE	YES	42	158	0.93	0.25	GT	1.6895	AG	1.9899	0.404	1057	0
TMPRSS2--ERG	35	0	35.00	0.00	TMPRSS2^ENSG00000184012.14	7359	chr21:41498119:-	ERG^ENSG00000157554.19	39981	chr21:38402637:-	ONLY_REF_SPLICE	YES	51	307	0.69	0.12	GT	1.9656	AG	1.4295	0.3625	1893	0
TMPRSS2--ERG	30	0	30.00	0.00	TMPRSS2^ENSG00000184012.14	4652	chr21:41508081:-	ERG^ENSG00000157554.19	38909	chr21:38403709:-	ONLY_REF_SPLICE	YES	42	161	0.72	0.19	GT	1.6895	AG	1.9899	0.3108	1071	0
TMPRSS2--ERG	18	0	18.00	0.00	TMPRSS2^ENSG00000184012.14	4652	chr21:41508081:-	ERG^ENSG00000157554.19	36539	chr21:38445621:-	ONLY_REF_SPLICE	YES	42	11	0.44	1.58	GT	1.6895	AG	1.9656	0.1865	350	0
EWSR1--ERG	81	5	81.00	3.21	EWSR1^ENSG00000182944.18	11554	chr22:29287134:+	ERG^ENSG00000157554.19	44967	chr21:38383923:-	ONLY_REF_SPLICE	YES	1548	263	0.06	0.33	GT	1.8062	AG	1.9086	0.8723	1191	0
EWSR1--ERG	44	6	44.00	2.79	EWSR1^ENSG00000182944.18	11554	chr22:29287134:+	ERG^ENSG00000157554.19	43919	chr21:38391042:-	ONLY_REF_SPLICE	YES	1548	272	0.03	0.19	GT	1.8062	AG	1.8062	0.4847	1677	0
KIAA1549--BRAF	75	28	75.00	12.56	KIAA1549^ENSG00000122778.10	24718	chr7:138840133:-	BRAF^ENSG00000157764.14	50867	chr7:140787584:-	ONLY_REF_SPLICE	YES	69	746	1.49	0.14	GT	1.4566	AG	1.9329	0.907	2455	0
KIAA1549--BRAF	69	5	69.00	0.98	KIAA1549^ENSG00000122778.10	14152	chr7:138894342:-	BRAF^ENSG00000157764.14	50867	chr7:140787584:-	ONLY_REF_SPLICE	YES	154	746	0.48	0.10	GT	1.8256	AG	1.9329	0.7249	96	1
KIAA1549--BRAF	62	24	62.00	6.72	KIAA1549^ENSG00000122778.10	21367	chr7:138861139:-	BRAF^ENSG00000157764.14	50867	chr7:140787584:-	ONLY_REF_SPLICE	YES	178	746	0.49	0.12	GT	1.9086	AG	1.9329	0.7118	1130	0
KIAA1549--BRAF	63	15	63.00	3.27	KIAA1549^ENSG00000122778.10	20049	chr7:138867975:-	BRAF^ENSG00000157764.14	50867	chr7:140787584:-	ONLY_REF_SPLICE	YES	248	746	0.32	0.11	GT	1.9656	AG	1.9329	0.6865	1530	0
KIAA1549--BRAF	62	12	62.00	2.41	KIAA1549^ENSG00000122778.10	18895	chr7:138869538:-	BRAF^ENSG00000157764.14	50867	chr7:140787584:-	ONLY_REF_SPLICE	YES	277	746	0.27	0.10	GT	1.5219	AG	1.9329	0.6672	2474	0
KIAA1549--BRAF	55	1	55.00	0.14	KIAA1549^ENSG00000122778.10	17671	chr7:138871157:-	BRAF^ENSG00000157764.14	53331	chr7:140783157:-	ONLY_REF_SPLICE	YES	199	1013	0.28	0.06	GT	1.4256	AG	1.9656	0.5712	2412	0
KIAA1549--BRAF	47	9	47.00	1.92	KIAA1549^ENSG00000122778.10	21367	chr7:138861139:-	BRAF^ENSG00000157764.14	53331	chr7:140783157:-	ONLY_REF_SPLICE	YES	178	1013	0.32	0.06	GT	1.9086	AG	1.9656	0.5068	3575	0
FGFR3--TACC3	67	5	67.00	1.93	FGFR3^ENSG00000068078.20	11811	chr4:1808867:+	TACC3^ENSG00000013810.20	22437	chr4:1731172:+	ONLY_REF_SPLICE	YES	4	1334	14.60	0.05	CC	1.9899	AG	1.9086	0.714	1818	0
FGFR3--TACC3	47	6	47.00	2.38	FGFR3^ENSG00000068078.20	11812	chr4:1808868:+	TACC3^ENSG00000013810.20	19989	chr4:1727709:+	INCL_NON_REF_SPLICE	YES	4	714	10.80	0.08	CT	1.9656	GC	1.8323	0.5116	272	0
FGFR3--TACC3	39	3	39.00	0.52	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	25486	chr4:1737598:+	ONLY_REF_SPLICE	YES	16	780	2.53	0.06	GT	1.8892	AG	1.6402	0.4094	91	1
FGFR3--TACC3	36	4	36.00	0.72	FGFR3^ENSG00000068078.20	11811	chr4:1808867:+	TACC3^ENSG00000013810.20	23567	chr4:1735273:+	ONLY_REF_SPLICE	YES	4	1077	8.20	0.04	CC	1.9899	AG	1.8892	0.3804	2289	0
FGFR3--TACC3	35	3	35.00	0.46	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	24025	chr4:1735731:+	ONLY_REF_SPLICE	YES	16	960	2.29	0.04	GT	1.8892	AG	1.9656	0.3673	1548	0
FGFR2--TACC3	64	6	64.00	6.00	FGFR2^ENSG00000066468.23	29010	chr10:121483698:-	TACC3^ENSG00000013810.20	41679	chr4:1727708:+	ONLY_REF_SPLICE	YES	8	685	7.89	0.10	GT	1.8323	AG	1.7056	0.7251	1192	0
FGFR2--TACC3	28	0	28.00	0.00	FGFR2^ENSG00000066468.23	29010	chr10:121483698:-	TACC3^ENSG00000013810.20	47177	chr4:1737598:+	ONLY_REF_SPLICE	YES	8	779	3.22	0.04	GT	1.8323	AG	1.6402	0.29	1795	0
FGFR2--TACC3	14	0	14.00	0.00	FGFR2^ENSG00000066468.23	29010	chr10:121483698:-	TACC3^ENSG00000013810.20	49281	chr4:1739702:+	ONLY_REF_SPLICE	YES	8	1103	1.67	0.01	GT	1.8323	AG	1.7819	0.145	1188	0
TRIM24--BRAF	59	20	59.00	12.46	TRIM24^ENSG00000122779.18	14326	chr7:138567654:+	BRAF^ENSG00000157764.14	47905	chr7:140787584:-	ONLY_REF_SPLICE	YES	285	746	0.28	0.11	GT	1.6402	AG	1.9329	0.7403	1536	0
TRIM24--BRAF	53	5	53.00	1.60	TRIM24^ENSG00000122779.18	10753	chr7:138551180:+	BRAF^ENSG00000157764.14	50369	chr7:140783157:-	ONLY_REF_SPLICE	YES	469	1011	0.13	0.06	GT	1.7819	AG	1.9656	0.5656	1323	0
TRIM24--BRAF	39	17	39.00	5.95	TRIM24^ENSG00000122779.18	12022	chr7:138554966:+	BRAF^ENSG00000157764.14	47905	chr7:140787584:-	ONLY_REF_SPLICE	YES	346	746	0.16	0.08	GT	1.7819	AG	1.9329	0.4656	1733	0
PML--RARA	63	3	63.00	1.54	PML^ENSG00000140464.20	10929	chr15:74033414:+	RARA^ENSG00000131759.18	33708	chr17:40348316:+	ONLY_REF_SPLICE	YES	1537	696	0.04	0.10	GT	1.3383	AG	1.9086	0.6686	1296	0
PML--RARA	55	8	55.00	6.46	PML^ENSG00000140464.20	12045	chr15:74034530:+	RARA^ENSG00000131759.18	33708	chr17:40348316:+	ONLY_REF_SPLICE	YES	1731	696	0.04	0.09	GT	1.9329	AG	1.9086	0.6366	183	0
SND1--BRAF	62	6	62.00	6.00	SND1^ENSG00000197157.11	24964	chr7:127991056:+	BRAF^ENSG00000157764.14	55981	chr7:140787584:-	ONLY_REF_SPLICE	YES	1461	746	0.05	0.09	GT	1.8295	AG	1.9329	0.7044	1527	0
AFAP1--NTRK2	61	9	61.00	9.00	AFAP1^ENSG00000196526.10	21829	chr4:7778762:-	NTRK2^ENSG00000148053.17	46551	chr9:84751986:+	ONLY_REF_SPLICE	YES	10	200	6.45	0.35	GT	1.8323	AG	1.7056	0.7251	1214	0
BRD4--NUTM1	61	2	61.00	2.00	BRD4^ENSG00000141867.19	17859	chr19:15254152:-	NUTM1^ENSG00000184507.16	36973	chr15:34347969:+	ONLY_REF_SPLICE	YES	1629	7	0.04	8.00	GT	1.7465	AG	1.9329	0.6526	762	0
TRIM33--RET	61	2	61.00	2.00	TRIM33^ENSG00000197323.12	15635	chr1:114406941:-	RET^ENSG00000165731.20	43081	chr10:43116584:+	ONLY_REF_SPLICE	YES	386	7	0.17	8.00	GT	1.8892	AG	1.8323	0.6526	1717	0
TPM3--NTRK1	52	9	52.00	4.78	TPM3^ENSG00000143549.21	13389	chr1:154170400:-	NTRK1^ENSG00000198400.13	41882	chr1:156874383:+	ONLY_REF_SPLICE	YES	2721	6	0.02	8.86	GT	1.9329	AG	1.5058	0.5881	168	0
TPM3--NTRK1	50	6	50.00	2.04	TPM3^ENSG00000143549.21	13140	chr1:154170649:-	NTRK1^ENSG00000198400.13	41882	chr1:156874383:+	ONLY_REF_SPLICE	YES	3306	6	0.02	8.14	GT	1.7968	AG	1.5058	0.539	276	0
TPM3--NTRK1	44	5	44.00	1.39	TPM3^ENSG00000143549.21	13389	chr1:154170400:-	NTRK1^ENSG00000198400.13	42070	chr1:156874571:+	ONLY_REF_SPLICE	YES	2721	19	0.02	2.50	GT	1.9329	AG	1.6895	0.4702	355	0
TPM3--NTRK1	37	4	37.00	0.79	TPM3^ENSG00000143549.21	13140	chr1:154170649:-	NTRK1^ENSG00000198400.13	42070	chr1:156874571:+	ONLY_REF_SPLICE	YES	3306	19	0.01	2.10	GT	1.7968	AG	1.6895	0.3915	417	0
PRKAR1A--RET	53	1	53.00	1.00	PRKAR1A^ENSG00000108946.15	8644	chr17:68525912:+	RET^ENSG00000165731.20	32187	chr10:43116584:+	ONLY_REF_SPLICE	YES	1303	7	0.04	6.88	GT	1.9219	AG	1.8323	0.5594	2585	0
NPM1--ALK	50	0	50.00	0.00	NPM1^ENSG00000181163.14	5684	chr5:171391799:+	ALK^ENSG00000171094.18	43573	chr2:29223528:-	ONLY_REF_SPLICE	YES	4848	18	0.01	2.68	GT	1.9656	AG	1.9086	0.5179	1186	0
NPM1--ALK	8	1	8.00	1.00	NPM1^ENSG00000181163.14	6701	chr5:171392816:+	ALK^ENSG00000171094.18	18634	chr2:29921586:-	ONLY_REF_SPLICE	YES	4726	0	0.00	10.00	GT	1.9329	GC	1.9329	0.0933	33	1
NSD3--NUTM1	49	1	49.00	1.00	NSD3^ENSG00000147548.17	11443	chr8:38326730:-	NUTM1^ENSG00000184507.16	43858	chr15:34347969:+	ONLY_REF_SPLICE	YES	764	7	0.07	6.38	GT	1.9656	AG	1.9329	0.518	1178	0
CCDC6--RET	47	2	47.00	2.00	CCDC6^ENSG00000108091.11	1435	chr10:59906122:-	RET^ENSG00000165731.20	31587	chr10:43116584:+	ONLY_REF_SPLICE	YES	726	7	0.07	6.25	GT	1.8892	AG	1.8323	0.5076	2092	0
TPM3--ALK	46	0	46.00	0.00	TPM3^ENSG00000143549.21	13389	chr1:154170400:-	ALK^ENSG00000171094.18	54468	chr2:29223528:-	ONLY_REF_SPLICE	YES	2723	18	0.02	2.47	GT	1.9329	AG	1.9086	0.4765	949	0
TPM3--ALK	7	1	7.00	1.00	TPM3^ENSG00000143549.21	13389	chr1:154170400:-	ALK^ENSG00000171094.18	29529	chr2:29921586:-	ONLY_REF_SPLICE	YES	2723	0	0.00	9.00	GT	1.9329	GC	1.9329	0.0829	66	1
ETV6--NTRK3	44	7	44.00	7.00	ETV6^ENSG00000139083.11	11237	chr12:11869969:+	NTRK3^ENSG00000140538.16	36490	chr15:88126373:-	ONLY_REF_SPLICE	YES	1212	1	0.04	26.00	GT	1.7819	AG	1.9656	0.5283	3007	0
SLC34A2--ROS1	45	2	45.00	2.00	SLC34A2^ENSG00000157765.13	6084	chr4:25664330:+	ROS1^ENSG00000047936.11	53638	chr6:117337340:-	ONLY_REF_SPLICE	YES	0	6	48.00	6.86	GT	1.8892	AG	1.7465	0.4868	2262	0
SLC34A2--ROS1	28	0	28.00	0.00	SLC34A2^ENSG00000157765.13	6084	chr4:25664330:+	ROS1^ENSG00000047936.11	56834	chr6:117326414:-	ONLY_REF_SPLICE	YES	0	174	29.00	0.17	GT	1.8892	AG	1.7232	0.29	183	0
ETV6--ABL1	45	0	45.00	0.00	ETV6^ENSG00000139083.11	11237	chr12:11869969:+	ABL1^ENSG00000097007.19	25631	chr9:130854064:+	ONLY_REF_SPLICE	YES	1213	307	0.04	0.15	GT	1.7819	AG	1.8892	0.4661	1152	0
FGFR1--TACC1	41	10	41.00	10.00	FGFR1^ENSG00000077782.21	27563	chr8:38413918:-	TACC1^ENSG00000147526.20	55170	chr8:38836162:+	ONLY_REF_SPLICE	YES	701	2121	0.07	0.02	GT	1.8892	AG	1.7465	0.5283	301	0
FGFR2--BICC1	41	0	41.00	0.00	FGFR2^ENSG00000066468.23	29010	chr10:121483698:-	BICC1^ENSG00000122870.12	40783	chr10:58702074:+	ONLY_REF_SPLICE	YES	8	0	4.67	42.00	GT	1.8323	AG	1.7968	0.4247	1673	0
COL1A1--PDGFB	40	1	40.00	1.00	COL1A1^ENSG00000108821.14	16097	chr17:50186317:-	PDGFB^ENSG00000100311.17	25647	chr22:39235874:-	ONLY_REF_SPLICE	YES	31	12	1.31	3.23	GT	1.9899	AG	1.7968	0.4247	1271	0
SDC4--ROS1	39	2	39.00	1.05	SDC4^ENSG00000124145.6	2239	chr20:45335782:-	ROS1^ENSG00000047936.11	42328	chr6:117337340:-	ONLY_REF_SPLICE	YES	155	6	0.27	6.00	GT	1.8892	AG	1.7465	0.4149	2052	0
SDC4--ROS1	28	10	28.00	8.54	SDC4^ENSG00000124145.6	4485	chr20:45330366:-	ROS1^ENSG00000047936.11	42328	chr6:117337340:-	ONLY_REF_SPLICE	YES	119	6	0.33	5.57	GT	1.7968	AG	1.7465	0.3785	1426	0
SDC4--ROS1	25	1	25.00	0.41	SDC4^ENSG00000124145.6	4485	chr20:45330366:-	ROS1^ENSG00000047936.11	45524	chr6:117326414:-	ONLY_REF_SPLICE	YES	119	174	0.23	0.15	GT	1.7968	AG	1.7232	0.2632	1743	0
PAX8--PPARG	36	5	36.00	5.00	PAX8^ENSG00000125618.18	10865	chr2:113227155:-	PPARG^ENSG00000132170.23	26778	chr3:12312380:+	ONLY_REF_SPLICE	YES	84	1	0.49	21.00	GT	1.8295	AG	1.8295	0.4247	3874	0
ETV6--NTRK2	36	3	36.00	3.00	ETV6^ENSG00000139083.11	11237	chr12:11869969:+	NTRK2^ENSG00000148053.17	50653	chr9:84934162:+	ONLY_REF_SPLICE	YES	1215	79	0.03	0.50	GT	1.7819	AG	1.9329	0.404	1252	0
TPR--NTRK1	36	1	36.00	1.00	TPR^ENSG00000047410.14	8773	chr1:186360765:-	NTRK1^ENSG00000198400.13	62972	chr1:156874571:+	ONLY_REF_SPLICE	YES	736	19	0.05	1.90	GT	1.6402	AG	1.6895	0.3833	2068	0
BRD3--NUTM1	36	0	36.00	0.00	BRD3^ENSG00000169925.17	12605	chr9:134040034:-	NUTM1^ENSG00000184507.16	28100	chr15:34353736:+	ONLY_REF_SPLICE	YES	218	12	0.17	2.85	GT	1.5219	AG	1.7819	0.3729	1018	0
CD74--ROS1	32	11	32.00	8.85	CD74^ENSG00000019582.16	7107	chr5:150402563:-	ROS1^ENSG00000047936.11	44344	chr6:117337340:-	ONLY_REF_SPLICE	YES	11000	6	0.00	6.29	GT	1.8892	AG	1.7465	0.4232	1566	0
CD74--ROS1	30	4	30.00	1.43	CD74^ENSG00000019582.16	4990	chr5:150404680:-	ROS1^ENSG00000047936.11	44344	chr6:117337340:-	ONLY_REF_SPLICE	YES	11196	6	0.00	5.00	GT	1.7819	AG	1.7465	0.3256	1261	0
CD74--ROS1	20	2	20.00	0.36	CD74^ENSG00000019582.16	4990	chr5:150404680:-	ROS1^ENSG00000047936.11	47540	chr6:117326414:-	ONLY_REF_SPLICE	YES	11196	174	0.00	0.13	GT	1.7819	AG	1.7232	0.2109	1406	0
CD74--ROS1	20	2	20.00	0.36	CD74^ENSG00000019582.16	4990	chr5:150404680:-	ROS1^ENSG00000047936.11	48731	chr6:117324415:-	ONLY_REF_SPLICE	YES	11196	175	0.00	0.13	GT	1.7819	AG	1.7465	0.2109	2407	0
CD74--NRG1	34	1	34.00	1.00	CD74^ENSG00000019582.16	7107	chr5:150402563:-	NRG1^ENSG00000157168.20	39090	chr8:32756403:+	ONLY_REF_SPLICE	YES	10997	0	0.00	36.00	GT	1.8892	AG	1.3383	0.3626	1916	0
NAB2--STAT6	32	9	32.00	9.00	NAB2^ENSG00000166886.13	4786	chr12:57093598:+	STAT6^ENSG00000166888.12	22861	chr12:57099440:-	ONLY_REF_SPLICE	YES	942	1718	0.04	0.02	GT	1.8295	AG	1.9656	0.4247	579	0
CLTC--ALK	32	0	32.00	0.00	CLTC^ENSG00000141367.12	31398	chr17:59690711:+	ALK^ENSG00000171094.18	63682	chr2:29223528:-	ONLY_REF_SPLICE	YES	1243	18	0.03	1.74	GT	1.8892	AG	1.9086	0.3315	738	0
CLTC--ALK	6	1	6.00	1.00	CLTC^ENSG00000141367.12	31398	chr17:59690711:+	ALK^ENSG00000171094.18	38743	chr2:29921586:-	ONLY_REF_SPLICE	YES	1243	0	0.01	8.00	GT	1.8892	GC	1.9329	0.0726	2756	0
KIF5B--ALK	32	0	32.00	0.00	KIF5B^ENSG00000170759.11	16251	chr10:32021226:-	ALK^ENSG00000171094.18	52570	chr2:29223528:-	ONLY_REF_SPLICE	YES	791	18	0.04	1.74	GC	1.7465	AG	1.9086	0.3315	113	0
KIF5B--ALK	6	0	6.00	0.00	KIF5B^ENSG00000170759.11	19977	chr10:32017143:-	ALK^ENSG00000171094.18	27631	chr2:29921586:-	ONLY_REF_SPLICE	YES	632	0	0.01	7.00	GT	1.9656	GC	1.9329	0.0622	636	0
MGA--NUTM1	32	0	32.00	0.00	MGA^ENSG00000174197.16	31460	chr15:41762362:+	NUTM1^ENSG00000184507.16	46224	chr15:34347969:+	ONLY_REF_SPLICE	YES	155	7	0.21	4.12	GT	1.5656	AG	1.9329	0.3315	341	0
FUS--ERG	31	1	31.00	1.00	FUS^ENSG00000089280.19	11302	chr16:31191609:+	ERG^ENSG00000157554.19	24350	chr21:38445617:-	INCL_NON_REF_SPLICE	YES	0	20	33.00	1.57	GT	1.1589	AG	1.9219	0.3315	3611	0
ETV6--PDGFRB	31	0	31.00	0.00	ETV6^ENSG00000139083.11	18918	chr12:11895377:+	PDGFRB^ENSG00000113721.14	31979	chr5:150129968:-	ONLY_REF_SPLICE	YES	0	88	32.00	0.36	TA	1.5656	AG	1.9329	0.3211	2865	0
EWSR1--FLI1	30	3	30.00	1.84	EWSR1^ENSG00000182944.18	11554	chr22:29287134:+	FLI1^ENSG00000151702.17	37165	chr11:128805366:+	ONLY_REF_SPLICE	YES	1551	709	0.02	0.05	GT	1.8062	AG	1.7819	0.3299	1466	0
EWSR1--FLI1	11	3	11.00	0.67	EWSR1^ENSG00000182944.18	11554	chr22:29287134:+	FLI1^ENSG00000151702.17	34609	chr11:128781958:+	ONLY_REF_SPLICE	YES	1551	651	0.01	0.02	GT	1.8062	AG	1.8256	0.1208	995	0
EWSR1--FLI1	8	3	8.00	0.49	EWSR1^ENSG00000182944.18	22093	chr22:29300521:+	FLI1^ENSG00000151702.17	33405	chr11:128772782:+	ONLY_REF_SPLICE	YES	1	615	6.00	0.02	GT	1.3996	AG	1.8892	0.088	692	0
TRIM24--NTRK2	30	1	30.00	1.00	TRIM24^ENSG00000122779.18	16636	chr7:138573642:+	NTRK2^ENSG00000148053.17	51924	chr9:84861040:+	ONLY_REF_SPLICE	YES	391	77	0.08	0.41	GT	1.8892	AG	1.7232	0.3212	1039	0
TBL1XR1--TP63	29	1	29.00	1.00	TBL1XR1^ENSG00000177565.18	31430	chr3:177032971:-	TP63^ENSG00000073282.14	49105	chr3:189808272:+	ONLY_REF_SPLICE	YES	433	93	0.07	0.33	GT	1.9329	AG	1.7056	0.3108	1327	0
QKI--NTRK2	29	0	29.00	0.00	QKI^ENSG00000112531.17	13018	chr6:163563719:+	NTRK2^ENSG00000148053.17	60757	chr9:84948462:+	ONLY_REF_SPLICE	YES	700	88	0.04	0.34	GT	1.7819	AG	1.9329	0.3004	1837	0
FUS--DDIT3	28	0	28.00	0.00	FUS^ENSG00000089280.19	11298	chr16:31191605:+	DDIT3^ENSG00000175197.12	15431	chr12:57520514:-	INCL_NON_REF_SPLICE	YES	0	3	29.00	7.25	TT	1.7056	AG	1.9329	0.29	1673	0
NCOA4--RET	26	7	26.00	7.00	NCOA4^ENSG00000266412.6	11059	chr10:46010223:-	RET^ENSG00000165731.20	30127	chr10:43116584:+	ONLY_REF_SPLICE	YES	667	7	0.05	4.25	GT	1.5656	AG	1.8323	0.3418	5099	0
EZR--ROS1	26	6	26.00	6.00	EZR^ENSG00000092820.18	12698	chr6:158769326:-	ROS1^ENSG00000047936.11	50185	chr6:117337340:-	ONLY_REF_SPLICE	YES	1614	6	0.02	4.71	GT	1.7465	AG	1.7465	0.3315	1897	0
EZR--ROS1	8	0	8.00	0.00	EZR^ENSG00000092820.18	11260	chr6:158770764:-	ROS1^ENSG00000047936.11	53381	chr6:117326414:-	ONLY_REF_SPLICE	YES	271	174	0.03	0.05	GT	1.2867	AG	1.7232	0.0829	75	1
TCF3--PBX1	26	0	26.00	0.00	TCF3^ENSG00000071564.17	14545	chr19:1615686:-	PBX1^ENSG00000185630.19	46234	chr1:164792494:+	ONLY_REF_SPLICE	YES	789	3	0.03	6.75	GT	1.4295	AG	1.8892	0.2693	1294	0
TCF3--PBX1	25	0	25.00	0.00	TCF3^ENSG00000071564.17	13409	chr19:1619111:-	PBX1^ENSG00000185630.19	46234	chr1:164792494:+	ONLY_REF_SPLICE	YES	943	3	0.03	6.50	GT	1.9219	AG	1.8892	0.259	1715	0
RUNX1--RUNX1T1	25	3	25.00	2.73	RUNX1^ENSG00000159216.19	35856	chr21:34799301:-	RUNX1T1^ENSG00000079102.16	47689	chr8:92095171:-	ONLY_REF_SPLICE	YES	115	3	0.25	7.25	GT	1.8892	AG	1.8892	0.2873	1273	0
RUNX1--RUNX1T1	10	1	10.00	0.27	RUNX1^ENSG00000159216.19	27252	chr21:34880557:-	RUNX1T1^ENSG00000079102.16	47689	chr8:92095171:-	ONLY_REF_SPLICE	YES	227	3	0.05	3.00	GT	1.6895	AG	1.8892	0.1064	1615	0
SLC45A3--ELK4	25	2	25.00	2.00	SLC45A3^ENSG00000158715.6	5142	chr1:205661861:-	ELK4^ENSG00000158711.14	13380	chr1:205623891:-	ONLY_REF_SPLICE	YES	63	300	0.44	0.09	GT	1.5656	AG	1.9656	0.2797	1529	0
HEY1--NCOA2	23	8	23.00	8.00	HEY1^ENSG00000164683.18	2207	chr8:79766651:-	NCOA2^ENSG00000140396.13	25820	chr8:70148483:-	ONLY_REF_SPLICE	YES	111	449	0.29	0.07	GT	1.3996	AG	1.8892	0.3211	1409	0
LPP--HMGA2	25	0	25.00	0.00	LPP^ENSG00000145012.13	33637	chr3:188872763:+	HMGA2^ENSG00000149948.14	53982	chr12:65824483:+	ONLY_REF_SPLICE	YES	11	0	2.17	26.00	GT	1.9656	TC	1.8323	0.259	2477	0
KMT2A--SEPTIN9	23	0	23.00	0.00	KMT2A^ENSG00000118058.23	54476	chr11:118526832:+	SEPTIN9^ENSG00000184640.20	63337	chr17:77307141:+	ONLY_REF_SPLICE	YES	0	312	24.00	0.08	CA	1.8892	AG	1.7819	0.2382	1560	0
STIL--TAL1	22	1	22.00	1.00	STIL^ENSG00000123473.16	4716	chr1:47304889:-	TAL1^ENSG00000162367.11	29830	chr1:47229771:-	ONLY_REF_SPLICE	YES	211	1	0.11	12.00	GT	1.9329	AG	1.7968	0.2383	2619	0
GOPC--ROS1	20	1	20.00	1.00	GOPC^ENSG00000047932.14	9512	chr6:117566854:-	ROS1^ENSG00000047936.11	48343	chr6:117337340:-	ONLY_REF_SPLICE	YES	308	6	0.07	3.14	GT	1.7968	AG	1.7465	0.2176	1852	0
MYB--NFIB	19	1	19.00	1.00	MYB^ENSG00000118513.19	19078	chr6:135219172:+	NFIB^ENSG00000147862.17	40521	chr9:14120624:-	ONLY_REF_SPLICE	YES	0	192	21.00	0.11	CT	1.5058	AG	1.8256	0.2072	4763	0
KIF5B--RET	18	4	18.00	2.58	KIF5B^ENSG00000170759.11	18804	chr10:32018316:-	RET^ENSG00000165731.20	40089	chr10:43116584:+	ONLY_REF_SPLICE	YES	974	7	0.02	2.88	GT	1.5546	AG	1.8323	0.2132	4064	0
KIF5B--RET	17	3	17.00	1.42	KIF5B^ENSG00000170759.11	14629	chr10:32022848:-	RET^ENSG00000165731.20	40089	chr10:43116584:+	ONLY_REF_SPLICE	YES	783	7	0.03	2.62	GT	1.7819	AG	1.8323	0.1908	1676	0
EWSR1--CREB1	17	0	17.00	0.00	EWSR1^ENSG00000182944.18	22093	chr22:29300521:+	CREB1^ENSG00000118260.15	39006	chr2:207577505:+	ONLY_REF_SPLICE	YES	1	735	9.00	0.02	GT	1.3996	AG	1.9086	0.1761	255	0
YWHAE--NUTM2B	16	1	16.00	1.00	YWHAE^ENSG00000108953.17	7788	chr17:1354211:-	NUTM2B^ENSG00000188199.10	15826	chr10:79706042:+	ONLY_REF_SPLICE	YES	1642	198	0.01	0.09	GT	1.8892	AG	1.9656	0.1761	1841	0
ASPSCR1--TFE3	16	0	16.00	0.00	ASPSCR1^ENSG00000169696.16	23677	chr17:82017406:+	TFE3^ENSG00000068323.17	26731	chrX:49043357:-	ONLY_REF_SPLICE	YES	0	30	17.00	0.55	CG	1.9086	GC	1.9656	0.1657	355	0
RANBP2--ALK	15	3	15.00	3.00	RANBP2^ENSG00000153201.16	15728	chr2:108758548:+	ALK^ENSG00000171094.18	36170	chr2:29921586:-	ONLY_REF_SPLICE	YES	688	0	0.03	19.00	GT	1.9329	GC	1.9329	0.1865	1252	0
EWSR1--WT1	15	1	15.00	1.00	EWSR1^ENSG00000182944.18	22093	chr22:29300521:+	WT1^ENSG00000184937.16	39512	chr11:32392755:-	ONLY_REF_SPLICE	YES	1	67	8.50	0.25	GT	1.3996	AG	1.8892	0.1658	99	1
FGFR1--PLAG1	14	4	14.00	4.00	FGFR1^ENSG00000077782.21	27569	chr8:38413912:-	PLAG1^ENSG00000181690.8	37316	chr8:56211267:-	INCL_NON_REF_SPLICE	YES	694	1	0.03	9.50	CT	1.9329	AC	1.9899	0.1864	1368	0
EGFR--SEPTIN14	14	3	14.00	3.00	EGFR^ENSG00000146648.19	30734	chr7:55200413:+	SEPTIN14^ENSG00000154997.9	54769	chr7:55796092:-	ONLY_REF_SPLICE	YES	61	17	0.29	1.00	GT	1.8892	AG	1.9899	0.1761	658	0
BCR--ABL1	14	1	14.00	1.00	BCR^ENSG00000186716.21	21553	chr22:23290413:+	ABL1^ENSG00000097007.19	44699	chr9:130854064:+	ONLY_REF_SPLICE	YES	279	307	0.06	0.05	GT	1.8892	AG	1.8892	0.1554	503	0
FGFR3--BAIAP2L1	14	0	14.00	0.00	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	BAIAP2L1^ENSG00000006453.14	16927	chr7:98362432:-	ONLY_REF_SPLICE	YES	16	91	0.88	0.16	GT	1.8892	AG	1.8062	0.145	1171	0
MIER2--LINC01002	14	0	14.00	0.00	MIER2^ENSG00000105556.11	14487	chr19:307119:-	LINC01002^ENSG00000282508.2	24512	chr19:239239:-	ONLY_REF_SPLICE	YES	330	2	0.05	5.00	GT	1.8892	AG	1.8892	0.145	577	0
MIER2--LINC01002	2	0	2.00	0.00	MIER2^ENSG00000105556.11	13069	chr19:308577:-	LINC01002^ENSG00000282508.2	24512	chr19:239239:-	ONLY_REF_SPLICE	YES	321	2	0.01	1.00	GT	1.8892	AG	1.8892	0.0207	1993	0
CDKN2D--WDFY2	13	2	13.00	2.00	CDKN2D^ENSG00000129355.7	3505	chr19:10566460:-	WDFY2^ENSG00000139668.9	16506	chr13:51675170:+	ONLY_REF_SPLICE	YES	0	105	16.00	0.15	GC	1.9656	AG	1.9086	0.1554	2248	0
TPM3--ROS1	12	2	12.00	2.00	TPM3^ENSG00000143549.21	13389	chr1:154170400:-	ROS1^ENSG00000047936.11	65630	chr6:117324415:-	ONLY_REF_SPLICE	YES	2723	175	0.01	0.09	GT	1.9329	AG	1.7465	0.145	2234	0
PTPRK--RSPO3	12	1	12.00	1.00	PTPRK^ENSG00000152894.15	17295	chr6:128184432:-	RSPO3^ENSG00000146374.14	55391	chr6:127148648:+	ONLY_REF_SPLICE	YES	65	0	0.21	14.00	GT	1.7968	AG	1.9329	0.1347	1434	0
SS18--SSX1	11	2	11.00	2.00	SS18^ENSG00000141380.14	24878	chr18:26016253:-	SSX1^ENSG00000126752.8	27879	chrX:48255392:+	ONLY_REF_SPLICE	YES	0	0	14.00	14.00	TT	1.3383	CC	1.8295	0.1346	3029	0
KMT2A--AFDN	9	1	9.00	1.00	KMT2A^ENSG00000118058.23	54476	chr11:118526832:+	AFDN^ENSG00000130396.20	59488	chr6:167864551:+	ONLY_REF_SPLICE	YES	0	741	11.00	0.01	CA	1.8892	AG	1.8892	0.1036	891	0
DNAJB1--PRKACA	9	0	9.00	0.00	DNAJB1^ENSG00000132002.9	13592	chr19:14516466:-	PRKACA^ENSG00000072062.15	25460	chr19:14107409:-	ONLY_REF_SPLICE	YES	476	2	0.02	3.33	GT	1.9086	AG	1.7819	0.0932	744	0
JAZF1--SUZ12	8	0	8.00	0.00	JAZF1^ENSG00000153814.13	9515	chr7:27895220:-	SUZ12^ENSG00000178691.11	20886	chr17:31940286:+	ONLY_REF_SPLICE	YES	85	672	0.10	0.01	GT	1.8062	AG	1.8323	0.0829	1663	0
KMT2A--SEPTIN6	8	0	8.00	0.00	KMT2A^ENSG00000118058.23	54476	chr11:118526832:+	SEPTIN6^ENSG00000125354.24	58772	chrX:119675668:-	ONLY_REF_SPLICE	YES	0	1699	9.00	0.01	CA	1.8892	AG	1.8295	0.0829	1850	0
MIER2--PLPP2	8	0	8.00	0.00	MIER2^ENSG00000105556.11	14487	chr19:307119:-	PLPP2^ENSG00000141934.10	25402	chr19:287751:-	ONLY_REF_SPLICE	YES	33	3	0.26	2.25	GT	1.8892	AG	1.7968	0.0829	596	0
CHCHD7--PLAG1	7	0	7.00	0.00	CHCHD7^ENSG00000170791.18	1152	chr8:56211837:+	PLAG1^ENSG00000181690.8	11176	chr8:56211273:-	ONLY_REF_SPLICE	YES	198	0	0.04	8.00	GT	1.4566	GC	1.8892	0.0725	90	1
KMT2A--MLLT11	7	0	7.00	0.00	KMT2A^ENSG00000118058.23	54480	chr11:118526836:+	MLLT11^ENSG00000213190.4	58638	chr1:151067223:+	INCL_NON_REF_SPLICE	YES	0	78	8.00	0.10	GT	1.9219	AG	1.9656	0.0725	851	0
HMGA2--WIF1	6	2	6.00	2.00	HMGA2^ENSG00000149948.14	24406	chr12:65966291:+	WIF1^ENSG00000156076.10	29296	chr12:65077854:-	ONLY_REF_SPLICE	YES	0	0	9.00	9.00	TC	1.8892	AG	1.9086	0.0829	1500	0
AC016629.1--RPL23AP82	6	0	6.00	0.00	AC016629.1^ENSG00000269032.1	1199	chr19:58586356:+	RPL23AP82^ENSG00000184319.16	10257	chr22:50798655:+	ONLY_REF_SPLICE	YES	0	9	7.00	0.70	GT	1.7819	AG	1.8062	0.0622	10000	0
AC016629.1--RPL23AP82	1	0	1.00	0.00	AC016629.1^ENSG00000269032.1	1199	chr19:58586356:+	RPL23AP82^ENSG00000184319.16	8798	chr22:50788895:+	ONLY_REF_SPLICE	YES	0	11	2.00	0.17	GT	1.7819	AG	1.8892	0.0104	10000	0
PRCC--TFE3	6	0	6.00	0.00	PRCC^ENSG00000143294.15	12284	chr1:156800815:+	TFE3^ENSG00000068323.17	15338	chrX:49043357:-	ONLY_REF_SPLICE	YES	0	30	7.00	0.23	CA	1.8892	GC	1.9656	0.0622	1919	0
ATF1--EWSR1	5	1	5.00	1.00	ATF1^ENSG00000123268.9	11425	chr12:50821162:+	EWSR1^ENSG00000182944.18	14685	chr22:29268268:+	ONLY_REF_SPLICE	YES	0	12	7.00	0.54	GC	1.5058	GC	1.8323	0.0622	1487	0
FUS--CREB3L2	5	0	5.00	0.00	FUS^ENSG00000089280.19	11302	chr16:31191609:+	CREB3L2^ENSG00000182158.15	14303	chr7:138002082:-	INCL_NON_REF_SPLICE	YES	0	2	6.00	2.00	GT	1.1589	AG	1.6895	0.0518	646	0
EWSR1--POU5F1	4	0	4.00	0.00	EWSR1^ENSG00000182944.18	22093	chr22:29300521:+	POU5F1^ENSG00000204531.20	26211	chr6:31170682:-	ONLY_REF_SPLICE	YES	1	4	2.50	1.00	GT	1.3996	TT	1.9329	0.0414	2260	0
OR2T2--OR2T5	4	0	4.00	0.00	OR2T2^ENSG00000196240.5	3499	chr1:248449392:+	OR2T5^ENSG00000203661.4	10440	chr1:248488579:+	INCL_NON_REF_SPLICE	YES	5	0	0.83	5.00	GT	1.6402	AG	1.9899	0.0414	1128	0
PLAG1--CTNNB1	4	0	4.00	0.00	PLAG1^ENSG00000181690.8	13352	chr8:56160909:-	CTNNB1^ENSG00000168036.18	19179	chr3:41199505:+	ONLY_REF_SPLICE	YES	0	61	5.00	0.08	GA	1.7819	TT	1.9329	0.0414	1626	0
KMT2A--EPS15	3	1	3.00	1.00	KMT2A^ENSG00000118058.23	54476	chr11:118526832:+	EPS15^ENSG00000085832.17	57477	chr1:51519266:-	ONLY_REF_SPLICE	YES	0	0	5.00	5.00	CA	1.8892	CC	1.2729	0.0415	2208	0
H3-3B--RECQL5	3	0	3.00	0.00	H3-3B^ENSG00000132475.10	5758	chr17:75778810:-	RECQL5^ENSG00000108469.15	14019	chr17:75662997:-	ONLY_REF_SPLICE	YES	2000	414	0.00	0.01	GT	1.8892	AG	1.8256	0.0311	505	0
MAP4K1--CACNA1F	3	0	3.00	0.00	MAP4K1^ENSG00000104814.13	16411	chr19:38597034:-	CACNA1F^ENSG00000102001.13	30736	chrX:49226702:-	ONLY_REF_SPLICE	YES	1076	33	0.00	0.12	GT	1.5656	AG	1.7056	0.0311	1357	0
SET--NUP214	3	0	3.00	0.00	SET^ENSG00000119335.17	10890	chr9:128696396:+	NUP214^ENSG00000126883.17	13895	chr9:131125586:+	ONLY_REF_SPLICE	YES	0	0	4.00	4.00	CT	1.4566	GC	1.8892	0.0311	2360	0
AC021851.1--NUP35	2	0	2.00	0.00	AC021851.1^ENSG00000272800.3	2635	chr2:183182680:+	NUP35^ENSG00000163002.13	18024	chr2:183151508:+	ONLY_REF_SPLICE	YES	1	119	1.50	0.03	GT	1.8062	AG	1.8256	0.0207	1201	0
AC021851.1--NUP35	1	0	1.00	0.00	AC021851.1^ENSG00000272800.3	2635	chr2:183182680:+	NUP35^ENSG00000163002.13	13860	chr2:183128287:+	ONLY_REF_SPLICE	YES	1	199	1.00	0.01	GT	1.8062	AG	1.9219	0.0104	1838	0
AC021851.1--NUP35	1	0	1.00	0.00	AC021851.1^ENSG00000272800.3	3897	chr2:183188763:+	NUP35^ENSG00000163002.13	22700	chr2:183161054:+	ONLY_REF_SPLICE	YES	0	126	2.00	0.02	GT	0.9056	AG	1.8892	0.0104	1348	0
AC021851.1--NUP35	1	0	1.00	0.00	AC021851.1^ENSG00000272800.3	2635	chr2:183182680:+	NUP35^ENSG00000163002.13	16966	chr2:183133566:+	ONLY_REF_SPLICE	YES	1	108	1.00	0.02	GT	1.8062	AG	1.8062	0.0104	1257	0
KMT2A--ELL	2	0	2.00	0.00	KMT2A^ENSG00000118058.23	54476	chr11:118526832:+	ELL^ENSG00000105656.13	59793	chr19:18472882:-	ONLY_REF_SPLICE	YES	0	320	3.00	0.01	CA	1.8892	AG	1.8295	0.0207	2357	0