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multiqc_general_stats.tsv
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s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_rna_exp0032/A2327GFLT3/nfcore_rnafusion_100M_starfusionFilter__cd574a28--20260225-001000/QC/multiqc/multiqc_data/multiqc_general_stats.tsv
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cgp_rna_exp0032_cd574a28
Published
Feb 26, 2026 1:58 AM

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sample_id TOTAL_READS EXPECTED_DISTINCT READS FRAC_UNMAPPED UNIQUE_READS FRAC_DUPES FRAC_READS_ON_TARGET FRAC_READS_OFF_TARGET N_Q30 MEAN_DEPTH Q50_DEPTH FRAC_BASES_GT30X FRAC_BASES_GT100X GC_BIAS FRAGMENT_LENGTH_MEAN FRAGMENT_LENGTH_MEDIAN PCT_MITO_EST_COUNTS PCT_RIBO_EST_COUNTS PCT_HK_EST_COUNTS PCT_MALE_EST_COUNTS PCT_MITO_TPM PCT_RIBO_TPM PCT_HK_TPM PCT_MALE_TPM IS_CONTAMINATED CONTAMINATION_PCT SUMMED_MEDIAN SUMMED_MEAN PERCENT_DUPLICATION PCT_RIBOSOMAL_BASES PCT_MRNA_BASES PROPER_PAIRS_PERCENT UNIQUELY_MAPPED_PERCENT UNIQUELY_MAPPED PCT_DUPLICATION AFTER_FILTERING_Q30_RATE AFTER_FILTERING_Q30_BASES FILTERING_RESULT_PASSED_FILTER_READS AFTER_FILTERING_GC_CONTENT PCT_SURVIVING PCT_ADAPTER FRAGMENT_LENGTH PERCENT_ALIGNED PSEUDOALIGNED_READS PERCENT_DUPLICATES PERCENT_GC AVG_SEQUENCE_LENGTH MEDIAN_SEQUENCE_LENGTH PERCENT_FAILS TOTAL_SEQUENCES PERCENT_DUPLICATES PERCENT_GC AVG_SEQUENCE_LENGTH MEDIAN_SEQUENCE_LENGTH PERCENT_FAILS TOTAL_SEQUENCES
rna_s1804 9999000000.0 280424078.0 192892930.0 0.011404 133557934.0 0.307606 0.869208 0.114322 0.947727 253.597623 70.0 0.563233 0.466292 0.0 159.0 152.0 0.11 1.5 0.59 0.0 0.2 4.31 0.83 0.0 No 0.0 191 420.029005 0.311154 9.999999999999999e-05 92.6257 88.09551441948229 95.23 91841617.0 17.862000000000002 0.944989 25191312080.0 192892930.0 0.542401 96.446465 40.6605785
rna_s1804_1 159.0 92.77448167747777 89477708.0 69.82133595000946 54.0 151.0 151 27.27272727272727 100000000.0
rna_s1804_2 70.07323204734318 55.0 151.0 151 27.27272727272727 100000000.0
rna_s1804_trimmed_1 69.84684464420098 54.0 138.1084806374189 151 18.181818181818183 96446465.0 69.84684464420098 54.0 138.1084806374189 151 18.181818181818183 96446465.0
rna_s1804_trimmed_2 71.05407909198236 54.0 138.27548854175214 151 9.090909090909092 96446465.0 71.05407909198236 54.0 138.27548854175214 151 9.090909090909092 96446465.0
rna_s1805 9999000000.0 325691724.0 191534576.0 0.011985 135832811.0 0.290818 0.868738 0.114362 0.946619 256.750097 72.0 0.564534 0.468775 0.0 158.0 150.0 0.1 1.54 0.6 0.0 0.19 4.44 0.83 0.0 No 0.0 189 411.74451199999993 0.294346 9.999999999999999e-05 92.4001 87.0333677773161 94.91 90888802.0 16.997799999999998 0.943685 24880324646.0 191534576.0 0.542387 95.767288 41.475914
rna_s1805_1 158.0 92.4698849151915 88555901.0 69.23915266339753 54.0 151.0 151 36.36363636363637 100000000.0
rna_s1805_2 69.31040703155891 55.0 151.0 151 27.27272727272727 100000000.0
rna_s1805_trimmed_1 69.22072598174962 53.0 137.5463663437979 151 18.181818181818183 95767288.0 69.22072598174962 53.0 137.5463663437979 151 18.181818181818183 95767288.0
rna_s1805_trimmed_2 70.34752238100043 54.0 137.74124083998285 151 9.090909090909092 95767288.0 70.34752238100043 54.0 137.74124083998285 151 9.090909090909092 95767288.0
rna_s1806 9999000000.0 296768442.0 193022692.0 0.010913 136407084.0 0.293311 0.870678 0.113879 0.947852 260.626701 73.0 0.565948 0.470384 0.0 159.3 150.0 0.1 1.53 0.59 0.0 0.19 4.42 0.82 0.0 No 0.0 193 429.556642 0.296547 9.999999999999999e-05 92.4447 87.48824699239819 95.1 91780604.0 17.3003 0.945301 25214289685.0 193022692.0 0.542165 96.511346 40.6173165
rna_s1806_1 159.3 92.54278455509262 89314287.0 69.27411656560231 54.0 151.0 151 27.27272727272727 100000000.0
rna_s1806_2 69.83412471817016 55.0 151.0 151 27.27272727272727 100000000.0
rna_s1806_trimmed_1 69.27368888922597 53.0 138.1398816984689 151 18.181818181818183 96511346.0 69.27368888922597 53.0 138.1398816984689 151 18.181818181818183 96511346.0
rna_s1806_trimmed_2 70.69735898961348 54.0 138.2200770156081 151 9.090909090909092 96511346.0 70.69735898961348 54.0 138.2200770156081 151 9.090909090909092 96511346.0
rna_s1807 9999000000.0 288514811.0 192630774.0 0.011049 133225330.0 0.30839 0.869759 0.114265 0.947267 252.61324 70.0 0.563217 0.466044 0.0 157.7 150.0 0.11 1.52 0.59 0.0 0.2 4.37 0.83 0.0 No 0.0 190 414.476308 0.311836 9.999999999999999e-05 92.57560000000001 87.26793277386963 95.04 91538373.0 17.9587 0.944658 25088918632.0 192630774.0 0.543282 96.315387 41.4677115
rna_s1807_1 157.7 92.66416175018847 89249846.0 69.92409588710726 54.0 151.0 151 27.27272727272727 100000000.0
rna_s1807_2 69.97836628219136 55.0 151.0 151 27.27272727272727 100000000.0
rna_s1807_trimmed_1 69.75196917738592 54.0 137.82613561008688 151 18.181818181818183 96315387.0 69.75196917738592 54.0 137.82613561008688 151 18.181818181818183 96315387.0
rna_s1807_trimmed_2 70.78447384987723 54.0 137.9062690367428 151 9.090909090909092 96315387.0 70.78447384987723 54.0 137.9062690367428 151 9.090909090909092 96315387.0
rna_s1808 9999000000.0 291223020.0 192073494.0 0.011458 132609550.0 0.30959 0.868166 0.115238 0.946537 249.22329 69.0 0.562236 0.465004 0.0 156.9 149.0 0.1 1.55 0.6 0.0 0.18 4.44 0.83 0.0 No 0.0 188 412.09697800000004 0.313178 9.999999999999999e-05 92.6065 87.79069127853303 95.19 91419503.0 18.154899999999998 0.94368 24929534126.0 192073494.0 0.541004 96.036747 42.278578
rna_s1808_1 156.9 92.73562025169386 89060273.0 70.05241513505567 54.0 151.0 151 27.27272727272727 100000000.0
rna_s1808_2 69.78605095368725 55.0 151.0 151 27.27272727272727 100000000.0
rna_s1808_trimmed_1 70.00461866032143 53.0 137.4439683072564 151 18.181818181818183 96036747.0 70.00461866032143 53.0 137.4439683072564 151 18.181818181818183 96036747.0
rna_s1808_trimmed_2 70.67810008728358 54.0 137.61532535040988 151 9.090909090909092 96036747.0 70.67810008728358 54.0 137.61532535040988 151 9.090909090909092 96036747.0
rna_s1809 9999000000.0 314838512.0 192382186.0 0.011412 131483134.0 0.316552 0.868405 0.114897 0.945908 244.451308 68.0 0.560948 0.462717 0.0 154.6 147.0 0.11 1.53 0.6 0.0 0.2 4.41 0.83 0.0 No 0.0 183 391.546576 0.320207 9.999999999999999e-05 92.7299 88.0377847970229 95.26 91630041.0 17.982400000000002 0.943151 24830012591.0 192382186.0 0.541831 96.19109300000001 43.888188500000005
rna_s1809_1 154.6 92.86194616792638 89324921.0 70.80109604865966 54.0 151.0 151 27.27272727272727 100000000.0
rna_s1809_2 70.19361698352783 55.0 151.0 151 27.27272727272727 100000000.0
rna_s1809_trimmed_1 70.80652727629807 53.0 136.74754976534055 151 18.181818181818183 96191093.0 70.80652727629807 53.0 136.74754976534055 151 18.181818181818183 96191093.0
rna_s1809_trimmed_2 71.10371992751868 54.0 136.927634100176 151 9.090909090909092 96191093.0 71.10371992751868 54.0 136.927634100176 151 9.090909090909092 96191093.0
rna_s1810 9999000000.0 280394434.0 192790304.0 0.01153 134467938.0 0.302517 0.86997 0.113499 0.949182 254.746536 71.0 0.563655 0.467055 0.0 158.0 150.0 0.11 1.51 0.6 0.0 0.2 4.36 0.85 0.0 No 0.0 190 414.51417999999995 0.306046 9.999999999999999e-05 92.6389 87.73261491389593 95.12 91694330.0 17.7341 0.94649 25150741605.0 192790304.0 0.54281 96.395152 41.370923
rna_s1810_1 158.0 92.7636755010252 89419686.0 69.93981760547287 54.0 151.0 151 27.27272727272727 100000000.0
rna_s1810_2 70.07070166095369 55.0 151.0 151 27.27272727272727 100000000.0
rna_s1810_trimmed_1 69.9394935057038 54.0 137.73862979125755 151 18.181818181818183 96395152.0 69.9394935057038 54.0 137.73862979125755 151 18.181818181818183 96395152.0
rna_s1810_trimmed_2 71.06858012575766 54.0 137.90896522472417 151 9.090909090909092 96395152.0 71.06858012575766 54.0 137.90896522472417 151 9.090909090909092 96395152.0
rna_s1811 9999000000.0 279506548.0 193077340.0 0.011408 131083394.0 0.321083 0.868528 0.114669 0.947834 244.980534 68.0 0.561345 0.462315 0.0 155.2 148.0 0.12 1.51 0.6 0.0 0.21 4.36 0.84 0.0 No 0.0 184 396.037275 0.324789 9.999999999999999e-05 92.7756 87.8928802744465 95.19 91892617.0 18.7442 0.945169 25008905184.0 193077340.0 0.542308 96.53867000000001 43.486028
rna_s1811_1 155.2 92.92100046540935 89704698.0 70.94089556145218 54.0 151.0 151 27.27272727272727 100000000.0
rna_s1811_2 70.30858620403066 54.0 151.0 151 27.27272727272727 100000000.0
rna_s1811_trimmed_1 70.90952048402461 53.0 136.94811812717123 151 18.181818181818183 96538670.0 70.90952048402461 53.0 136.94811812717123 151 18.181818181818183 96538670.0
rna_s1811_trimmed_2 71.25320413516936 54.0 137.12035194808465 151 9.090909090909092 96538670.0 71.25320413516936 54.0 137.12035194808465 151 9.090909090909092 96538670.0
41 rows