File Info
- Filename
- multiqc_general_stats_controls.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_rna_exp0034/B2372Y3LT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats_controls.tsv
- Size
- 1.9 KB
- Workflow Run
- cgp_rna_exp0034_2cae617
- Published
- May 16, 2026 7:25 AM
Content
View in new tab| sample_id | FRAGMENT_LENGTH_MEAN | FRAGMENT_LENGTH_MEDIAN | PCT_MITO_EST_COUNTS | PCT_RIBO_EST_COUNTS | PCT_HK_EST_COUNTS | PCT_MALE_EST_COUNTS | MITOCHONDRIAL_CONTAMINATION | RIBOSOMAL_CONTAMINATION | PCT_HK_TPM | PCT_MALE_TPM | IS_CONTAMINATED | CONTAMINATION_PCT | TOTAL_READS | EXPECTED_DISTINCT | READS | FRAC_UNMAPPED | FRAC_DUPES | UNIQUE_READS | FRAC_READS_ON_TARGET | FRAC_PAIRS_ON_TARGET | FRAC_READS_OFF_TARGET | FRAC_PAIRS_OFF_TARGET | READS_ON_TARGET | PAIRS_ON_TARGET | READS_OFF_TARGET | PAIRS_OFF_TARGET | MEAN_DEPTH | Q50_DEPTH | FRAC_BASES_GT30X | FRAC_BASES_GT100X | N_Q30 | GC_BIAS | SUMMED_MEDIAN | SUMMED_MEAN | PERCENT_DUPLICATION | PCT_RIBOSOMAL_BASES | PCT_MRNA_BASES | PROPER_PAIRS_PERCENT | UNIQUELY_MAPPED_PERCENT | MAPPED_READS | PCT_DUPLICATION | AFTER_FILTERING_Q30_RATE | AFTER_FILTERING_Q30_BASES | FILTERING_RESULT_PASSED_FILTER_READS | AFTER_FILTERING_GC_CONTENT | PCT_SURVIVING | PCT_ADAPTER | FRAGMENT_LENGTH | PERCENT_ALIGNED | PSEUDOALIGNED_READS | PERCENT_DUPLICATES | PERCENT_GC | AVG_SEQUENCE_LENGTH | MEDIAN_SEQUENCE_LENGTH | PERCENT_FAILS | TOTAL_SEQUENCES |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_1 | 183.1 | 169.0 | 0.03 | 1.16 | 0.6 | 0.0 | 0.06 | 3.43 | 0.88 | 0.0 | Yes | 61.38 | 9999000000.0 | 436935689.0 | 551039378.0 | 0.004741 | 0.418344 | 320515598.0 | 0.93572 | 0.96387 | 0.056129 | 0.03613 | 299912963.0 | 152852955.0 | 17990320.0 | 5729653.0 | 694.28725 | 292.0 | 0.720103 | 0.622765 | 0.968559 | 0.0 | 329 | 989.863208 | 0.420336 | 0.0 | 97.0981 | 91.6831723421637 | 96.67 | 266333724.0 | 29.9162 | 0.967612 | 75473966907.0 | 551039378.0 | 0.539816 | 99.09036474588716 | 32.036416469447175 | |||||||||
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_2 | 180.3 | 166.0 | 0.03 | 1.17 | 0.6 | 0.0 | 0.06 | 3.45 | 0.89 | 0.0 | Yes | 61.41 | 9999000000.0 | 435372908.0 | 529199326.0 | 0.00472 | 0.412613 | 310844743.0 | 0.936738 | 0.964254 | 0.055226 | 0.035746 | 291180106.0 | 148323947.0 | 17166746.0 | 5498468.0 | 668.744371 | 280.0 | 0.717107 | 0.61867 | 0.96861 | 0.0 | 316 | 950.726304 | 0.41457 | 0.0 | 97.1416 | 91.61443876975345 | 96.65 | 255732732.0 | 29.446499999999997 | 0.967673 | 72237442146.0 | 529199326.0 | 0.540787 | 99.12923510200056 | 33.39494276839751 |
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