File Info
- Filename
- run_level_intermediate.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_rna_exp0034/B2372Y3LT4/nfcore_rnafusion__2cae617--20260515-145204/QC_run_metrics/intermediate/run_level_intermediate.tsv
- Size
- 4.3 KB
- Workflow Run
- cgp_rna_exp0034_2cae617
- Published
- May 16, 2026 7:26 AM
Content
View in new tab| SAMPLE_ID | SOURCE_QC | ANALYTE | PIPELINE_VERSION | QC_METRIC | VALUE | METRIC_ORIGIN |
| RUN | RNA | rnafusion_3.0.2-gunknown | CLUSTER_DENSITY | 9457.29 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | READS_PASSING_FILTER_PERCENT | 81.0109 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | Q30_RUN_WIDE_PERCENT | 94.0125 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | OCCUPANCY_RATE | 96.5857 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | YIELD_IN_GB | 9980.266709822 | bclconvert | |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS | 278048920 | bclconvert |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_2 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS | 266923943 | bclconvert |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 551039378.0 | seqtools |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_ON_TARGET | 0.93572 | seqtools |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_ON_TARGET | 0.96387 | seqtools |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_OFF_TARGET | 0.056129 | seqtools |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_OFF_TARGET | 0.03613 | seqtools |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_ON_TARGET | 299912963.0 | seqtools |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_ON_TARGET | 152852955.0 | seqtools |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_OFF_TARGET | 17990320.0 | seqtools |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_OFF_TARGET | 5729653.0 | seqtools |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | GC_BIAS | 0.0 | seqtools |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MAPPED_READS | 266333724.0 | star |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_UNMAPPED | 0.004741 | star |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAGMENT_LENGTH_MEDIAN | 169.0 | kallisto |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MITOCHONDRIAL_CONTAMINATION | 0.06 | kallisto |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | RIBOSOMAL_CONTAMINATION | 3.43 | kallisto |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PCT_CONTAMINATION | 61.38 | contamination |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_2 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 529199326.0 | seqtools |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_2 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_ON_TARGET | 0.936738 | seqtools |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_2 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_ON_TARGET | 0.964254 | seqtools |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_2 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_OFF_TARGET | 0.055226 | seqtools |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_2 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_OFF_TARGET | 0.035746 | seqtools |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_2 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_ON_TARGET | 291180106.0 | seqtools |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_2 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_ON_TARGET | 148323947.0 | seqtools |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_2 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_OFF_TARGET | 17166746.0 | seqtools |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_2 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_OFF_TARGET | 5498468.0 | seqtools |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_2 | HD789 | RNA | rnafusion_3.0.2-gunknown | GC_BIAS | 0.0 | seqtools |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_2 | HD789 | RNA | rnafusion_3.0.2-gunknown | MAPPED_READS | 255732732.0 | star |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_2 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_UNMAPPED | 0.00472 | star |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_2 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAGMENT_LENGTH_MEDIAN | 166.0 | kallisto |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_2 | HD789 | RNA | rnafusion_3.0.2-gunknown | MITOCHONDRIAL_CONTAMINATION | 0.06 | kallisto |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_2 | HD789 | RNA | rnafusion_3.0.2-gunknown | RIBOSOMAL_CONTAMINATION | 3.45 | kallisto |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_2 | HD789 | RNA | rnafusion_3.0.2-gunknown | PCT_CONTAMINATION | 61.41 | contamination |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_ALL_RNA_FUSIONS | 60 | fusion |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_TRUE_RNA_FUSIONS | 0 | fusion |
| FFPE_HD789_01_RNA_0012_B2372Y3LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_FALSE_RNA_FUSIONS | 60 | fusion |
43 rows