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BCL CONVERT QC REPORT - DETAILED
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1. % UNDETERMINED PER LANE
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%_Undetermined Undetermined_Reads Total_Reads
Lane
1 5.64 235793804 4178183494
2 5.38 223373229 4154080559
3 5.35 222696692 4164624720
4 5.28 220506468 4176716290
5 4.49 182970053 4076051221
6 4.64 189527742 4080649153
7 4.74 195251453 4115249821
8 5.44 223243244 4101685503
2. SAMPLES WITH LOW READS (NON-NTC)
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Found 1 samples with low reads:
SampleID Index # Reads Lane(s)
95 dna_s778 ATATGCGC-ACGATCAG 70035 1,2,3,4
3. NTC SAMPLES WITH HIGH READS
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No NTC samples found with high reads
4. TOP UNKNOWN BARCODES
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Found 82 significant unknown barcodes:
Lane index index2 # Reads % of Unknown Barcodes % of All Reads Percentage_of_Lane Percentage_of_Total
0 1 CAGTCCAA GGGGGGGG 10285256 0.043620 0.002462 0.246166 0.031123
1 1 GATGTGTG GGGGGGGG 9728721 0.041259 0.002328 0.232846 0.029439
2 1 GAGCAGTA GGGGGGGG 9489358 0.040244 0.002271 0.227117 0.028715
3 1 ATCGCCAT GGGGGGGG 6429916 0.027269 0.001539 0.153893 0.019457
4 1 GAAGTTGG GGGGGGGG 4415690 0.018727 0.001057 0.105684 0.013362
5 1 AGTGGATC GGGGGGGG 4089810 0.017345 0.000979 0.097885 0.012376
6 1 CGCTCTAT GGGGGGGG 3490084 0.014801 0.000835 0.083531 0.010561
7 1 ACGTTCAG GGGGGGGG 3390472 0.014379 0.000811 0.081147 0.010259
8 1 TTGCAGAC GGGGGGGG 2972173 0.012605 0.000711 0.071136 0.008994
9 1 TATCGGTC GGGGGGGG 2791736 0.011840 0.000668 0.066817 0.008448
10 1 TGCTTCCA GGGGGGGG 2791429 0.011838 0.000668 0.066810 0.008447
11 1 GAACATCG GGGGGGGG 2483983 0.010535 0.000595 0.059451 0.007516
12 2 CAGTCCAA GGGGGGGG 9082269 0.040660 0.002186 0.218635 0.027483
13 2 GATGTGTG GGGGGGGG 8581248 0.038417 0.002066 0.206574 0.025967
14 2 GAGCAGTA GGGGGGGG 8512482 0.038109 0.002049 0.204919 0.025759
15 2 ATCGCCAT GGGGGGGG 5842412 0.026155 0.001406 0.140643 0.017679
16 2 GAAGTTGG GGGGGGGG 3816971 0.017088 0.000919 0.091885 0.011550
17 2 AGTGGATC GGGGGGGG 3748721 0.016782 0.000902 0.090242 0.011344
18 2 CGCTCTAT GGGGGGGG 3087107 0.013820 0.000743 0.074315 0.009341
19 2 ACGTTCAG GGGGGGGG 2965183 0.013275 0.000714 0.071380 0.008973
20 2 TTGCAGAC GGGGGGGG 2609795 0.011684 0.000628 0.062825 0.007897
21 2 TGCTTCCA GGGGGGGG 2486298 0.011131 0.000599 0.059852 0.007523
22 2 TATCGGTC GGGGGGGG 2469739 0.011057 0.000595 0.059453 0.007473
23 2 GAACATCG GGGGGGGG 2212805 0.009906 0.000533 0.053268 0.006696
24 3 CAGTCCAA GGGGGGGG 8391981 0.037683 0.002015 0.201506 0.025394
25 3 GATGTGTG GGGGGGGG 7930557 0.035611 0.001904 0.190427 0.023998
26 3 GAGCAGTA GGGGGGGG 7696259 0.034559 0.001848 0.184801 0.023289
27 3 ATCGCCAT GGGGGGGG 5453060 0.024486 0.001309 0.130938 0.016501
28 3 GAAGTTGG GGGGGGGG 3542707 0.015908 0.000851 0.085067 0.010720
29 3 AGTGGATC GGGGGGGG 3241584 0.014556 0.000778 0.077836 0.009809
30 3 CGCTCTAT GGGGGGGG 3084599 0.013851 0.000741 0.074067 0.009334
31 3 ACGTTCAG GGGGGGGG 2815252 0.012642 0.000676 0.067599 0.008519
32 3 TTGCAGAC GGGGGGGG 2752765 0.012361 0.000661 0.066099 0.008330
33 3 TATCGGTC GGGGGGGG 2403361 0.010792 0.000577 0.057709 0.007273
34 3 TGCTTCCA GGGGGGGG 2240871 0.010062 0.000538 0.053807 0.006781
35 4 CAGTCCAA GGGGGGGG 8431164 0.038235 0.002019 0.201861 0.025512
36 4 GATGTGTG GGGGGGGG 8077027 0.036629 0.001934 0.193382 0.024441
37 4 GAGCAGTA GGGGGGGG 7764794 0.035213 0.001859 0.185907 0.023496
38 4 ATCGCCAT GGGGGGGG 5377367 0.024386 0.001287 0.128746 0.016272
39 4 GAAGTTGG GGGGGGGG 3528194 0.016000 0.000845 0.084473 0.010676
40 4 AGTGGATC GGGGGGGG 3271046 0.014834 0.000783 0.078316 0.009898
41 4 CGCTCTAT GGGGGGGG 3033542 0.013757 0.000726 0.072630 0.009179
42 4 ACGTTCAG GGGGGGGG 2804258 0.012717 0.000671 0.067140 0.008486
43 4 TTGCAGAC GGGGGGGG 2695874 0.012226 0.000645 0.064545 0.008158
44 4 TATCGGTC GGGGGGGG 2388859 0.010834 0.000572 0.057195 0.007229
45 4 TGCTTCCA GGGGGGGG 2253147 0.010218 0.000539 0.053945 0.006818
46 5 CTGATCGT GGGGGGGG 11054009 0.060414 0.002712 0.271194 0.033449
47 5 ACCACGAT GGGGGGGG 9333889 0.051013 0.002290 0.228993 0.028244
48 5 CTTGTCGA GGGGGGGG 7928727 0.043333 0.001945 0.194520 0.023992
49 5 CAACACCT GGGGGGGG 6185548 0.033806 0.001518 0.151753 0.018717
50 5 GAATCCGA GGGGGGGG 5047718 0.027588 0.001238 0.123838 0.015274
51 5 CGGTTGTT GGGGGGGG 4695549 0.025663 0.001152 0.115198 0.014209
52 5 GCAAGATC GGGGGGGG 4385145 0.023966 0.001076 0.107583 0.013269
53 5 ATGCCTGT AGATCTCG 2287218 0.012501 0.000561 0.056114 0.006921
54 6 CTGATCGT GGGGGGGG 12276254 0.064773 0.003008 0.300841 0.037148
55 6 ACCACGAT GGGGGGGG 10326738 0.054487 0.002531 0.253066 0.031248
56 6 CTTGTCGA GGGGGGGG 8812472 0.046497 0.002160 0.215958 0.026666
57 6 CAACACCT GGGGGGGG 6869507 0.036245 0.001683 0.168343 0.020787
58 6 GAATCCGA GGGGGGGG 5667219 0.029902 0.001389 0.138880 0.017149
59 6 CGGTTGTT GGGGGGGG 5161969 0.027236 0.001265 0.126499 0.015620
60 6 GCAAGATC GGGGGGGG 5018598 0.026479 0.001230 0.122985 0.015186
61 6 ATGCCTGT AGATCTCG 2132046 0.011249 0.000522 0.052248 0.006452
62 7 CTGATCGT GGGGGGGG 13637840 0.069848 0.003314 0.331398 0.041268
63 7 ACCACGAT GGGGGGGG 11306603 0.057908 0.002747 0.274749 0.034213
64 7 CTTGTCGA GGGGGGGG 9795215 0.050167 0.002380 0.238022 0.029640
65 7 CAACACCT GGGGGGGG 7558856 0.038713 0.001837 0.183679 0.022873
66 7 GAATCCGA GGGGGGGG 6339210 0.032467 0.001540 0.154042 0.019182
67 7 CGGTTGTT GGGGGGGG 5564126 0.028497 0.001352 0.135207 0.016837
68 7 GCAAGATC GGGGGGGG 5558486 0.028468 0.001351 0.135070 0.016820
69 8 CGCATGAT GGGGGGGG 15565656 0.069725 0.003795 0.379494 0.047101
70 8 AGAGTAGC GGGGGGGG 10901611 0.048833 0.002658 0.265784 0.032988
71 8 CTTGTCGA GGGGGGGG 8829560 0.039551 0.002153 0.215267 0.026718
72 8 TCGCTGTT GGGGGGGG 7311714 0.032752 0.001783 0.178261 0.022125
73 8 TACGCTAC GGGGGGGG 7217178 0.032329 0.001760 0.175956 0.021839
74 8 GAATCCGA GGGGGGGG 6681544 0.029929 0.001629 0.162898 0.020218
75 8 CTGATCGT GGGGGGGG 6151651 0.027556 0.001500 0.149979 0.018615
76 8 GACGATCT GGGGGGGG 5524725 0.024748 0.001347 0.134694 0.016718
77 8 GCAAGATC GGGGGGGG 5060828 0.022670 0.001234 0.123384 0.015314
78 8 AAGCACTG GGGGGGGG 4030620 0.018055 0.000983 0.098267 0.012197
79 8 GAGACGAT GGGGGGGG 2778990 0.012448 0.000678 0.067752 0.008409
80 8 ATCGATCG GGGGGGGG 2775400 0.012432 0.000677 0.067665 0.008398
81 8 CGGCTAAT GGGGGGGG 2106503 0.009436 0.000514 0.051357 0.006374
5. BARCODES WITH HIGH MISMATCH RATES
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No barcodes found with high mismatch rates
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FINAL STATUS CHECK
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Overall % Undetermined: 5.12%
Status: WARNING
Reason(s):
Overall undetermined 5.12% >= 5.0%