Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/1c8fe6a6930ebbd9aaee7ba7e2cb3f/dna_s761.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/004a12a7af3e1ecdb989b931a6b2a9/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/bda5f2c6bda9d2a8e38bb77156652c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/bda5f2c6bda9d2a8e38bb77156652c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/e4c7c021d8ea70669d08e158ca96c5/dna_s761.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: dna_s761.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.