File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/dc70036ff1910b1da31618d8b1ec26/.command.log
Size
1.0 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (659_beZ_T1_TRNA_2_B2372Y3LT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/dc70036ff1910b1da31618d8b1ec26/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/dc70036ff1910b1da31618d8b1ec26/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/5161bb682a8fa4803b8b84a25a2fd9/659_beZ_T1_TRNA_2_B2372Y3LT4_1.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/e0fa50ef7f2377179c8e6350d6b61f/659_beZ_T1_TRNA_2_B2372Y3LT4_1
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 659_beZ_T1_TRNA_2_B2372Y3LT4_1/abundance.h5
Successfully converted 659_beZ_T1_TRNA_2_B2372Y3LT4_1/abundance.h5 to 659_beZ_T1_TRNA_2_B2372Y3LT4_1_kallisto_mqc.tsv
  Sample: 659_beZ_T1_TRNA_2_B2372Y3LT4_1
  Mean Fragment Length: 146.5 bp
  Median Fragment Length: 140.0 bp
  pct_mito_est_counts: 0.081%
  pct_ribo_est_counts: 0.997%
  pct_hk_est_counts: 0.578%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.163%
  pct_ribo_tpm: 2.856%
  pct_hk_tpm: 0.837%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 5.68%