[W::hts_idx_load3] The index file is older than the data file: 659_cX2_T1_TRNA_1_B2372Y3LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	113334849
Known Splicing Events:	112384424
Partial Novel Splicing Events:	536099
Novel Splicing Events:	375373
Filtered Splicing Events:	38953

Total splicing  Junctions:	418629
Known Splicing Junctions:	234729
Partial Novel Splicing Junctions:	96156
Novel Splicing Junctions:	87744

===================================================================
Create BED file ...
Create Interact file ...