Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/d02e375c3a9297189e8bd919f41725/dna_s743_2.fastp.fastq.gz
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/d02e375c3a9297189e8bd919f41725/dna_s743_1.fastp.fastq.gz
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/92f6ef93675c9b42488875316588fa/dna_s743.Chimeric.out.junction
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/a69ab6313611094bef323230b1efb9/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/a69ab6313611094bef323230b1efb9/.command.run
==> STAGING COMPLETE (6 inputs)
-ctat genome lib [/tmp/nxf.l9lNEApbNg/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.l9lNEApbNg/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary
-sample contains 40838773 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.l9lNEApbNg/ctat_genome_lib_build_dir -J /tmp/nxf.l9lNEApbNg/dna_s743.Chimeric.out.junction -O /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4
-parsing fusion evidence: /tmp/nxf.l9lNEApbNg/dna_s743.Chimeric.out.junction
-building interval tree based on /tmp/nxf.l9lNEApbNg/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes
[10000], rate=60000.00/min
[20000], rate=66666.67/min
[30000], rate=75000.00/min
[40000], rate=88888.89/min
[50000], rate=88235.29/min
[60000], rate=90000.00/min
[70000], rate=85714.29/min
[80000], rate=82758.62/min
[90000], rate=72972.97/min
[100000], rate=68181.82/min
[110000], rate=66000.00/min
[120000], rate=64285.71/min
[130000], rate=62903.23/min
[140000], rate=62222.22/min
[150000], rate=61643.84/min
[160000], rate=61935.48/min
[170000], rate=62195.12/min
[180000], rate=63157.89/min
[190000], rate=61621.62/min
[200000], rate=60913.71/min
[210000], rate=60576.92/min
[220000], rate=60273.97/min
[230000], rate=60262.01/min
[240000], rate=60504.20/min
[250000], rate=60975.61/min
[260000], rate=61176.47/min
[270000], rate=61832.06/min
[280000], rate=61313.87/min
[290000], rate=60627.18/min
[300000], rate=60200.67/min
[310000], rate=59807.07/min
[320000], rate=59442.72/min
[330000], rate=59281.44/min
[340000], rate=59302.33/min
[350000], rate=59659.09/min
[360000], rate=60000.00/min
[370000], rate=59677.42/min -building interval tree based on /tmp/nxf.l9lNEApbNg/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes
[10000], rate=40000.00/min
[20000], rate=40000.00/min
[30000], rate=41860.47/min
[40000], rate=45283.02/min
[50000], rate=48387.10/min
[60000], rate=50704.23/min
[70000], rate=52500.00/min
[80000], rate=50526.32/min
[90000], rate=49090.91/min
[100000], rate=48780.49/min
[110000], rate=48888.89/min
[120000], rate=49315.07/min
[130000], rate=50000.00/min
[140000], rate=50909.09/min
[150000], rate=52023.12/min
[160000], rate=51891.89/min
[170000], rate=51515.15/min
[180000], rate=51428.57/min
[190000], rate=51583.71/min
[200000], rate=51948.05/min
[210000], rate=52500.00/min
[220000], rate=53012.05/min
[230000], rate=53488.37/min
[240000], rate=52941.18/min
[250000], rate=53003.53/min
[260000], rate=53242.32/min
[270000], rate=53465.35/min
[280000], rate=53503.18/min
[290000], rate=53703.70/min
[300000], rate=53892.22/min
[310000], rate=53602.31/min
[320000], rate=53781.51/min
[330000], rate=53804.35/min
[340000], rate=53968.25/min
[350000], rate=53984.58/min
[360000], rate=54408.06/min
[370000], rate=54950.50/min -building interval tree based on /tmp/nxf.l9lNEApbNg/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes
[10000], rate=100000.00/min
[20000], rate=75000.00/min
[30000], rate=66666.67/min
[40000], rate=66666.67/min
[50000], rate=66666.67/min
[60000], rate=65454.55/min
[70000], rate=62686.57/min
[80000], rate=63157.89/min
[90000], rate=64285.71/min
[100000], rate=66666.67/min
[110000], rate=64077.67/min
[120000], rate=63157.89/min
[130000], rate=63414.63/min
[140000], rate=63636.36/min
[150000], rate=61224.49/min
[160000], rate=58895.71/min
[170000], rate=57303.37/min
[180000], rate=56842.11/min
[190000], rate=56716.42/min
[200000], rate=56872.04/min
[210000], rate=57272.73/min
[220000], rate=57391.30/min
[230000], rate=56326.53/min
[240000], rate=56250.00/min
[250000], rate=56179.78/min
[260000], rate=55123.67/min
[270000], rate=54180.60/min
[280000], rate=53333.33/min
[290000], rate=52887.54/min
[300000], rate=52785.92/min
[310000], rate=52691.22/min
[320000], rate=52602.74/min
[330000], rate=52659.57/min
[340000], rate=52849.74/min
[350000], rate=53164.56/min
[360000], rate=53465.35/min
[370000], rate=53883.50/min -building interval tree based on /tmp/nxf.l9lNEApbNg/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes
[10000], rate=150000.00/min
[20000], rate=120000.00/min
[30000], rate=62068.97/min
[40000], rate=51063.83/min
[50000], rate=47619.05/min
[60000], rate=46753.25/min
[70000], rate=45652.17/min
[80000], rate=45714.29/min
[90000], rate=46153.85/min
[100000], rate=46511.63/min
[110000], rate=47142.86/min
[120000], rate=47058.82/min
[130000], rate=47852.76/min
[140000], rate=48554.91/min
[150000], rate=47872.34/min
[160000], rate=47761.19/min
[170000], rate=47663.55/min
[180000], rate=47577.09/min
[190000], rate=48305.08/min
[200000], rate=49382.72/min
[210000], rate=49411.76/min
[220000], rate=49253.73/min
[230000], rate=48936.17/min
[240000], rate=49146.76/min
[250000], rate=49668.87/min
[260000], rate=50160.77/min
[270000], rate=50943.40/min
[280000], rate=50450.45/min
[290000], rate=50144.09/min
[300000], rate=50000.00/min
[310000], rate=50000.00/min
[320000], rate=50000.00/min
[330000], rate=50000.00/min
[340000], rate=50620.35/min
[350000], rate=51219.51/min
[360000], rate=51674.64/min
[370000], rate=52358.49/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.l9lNEApbNg/ctat_genome_lib_build_dir --filt_file /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-parsing /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.
6000000.00 reads per min processed...
6000000.00 reads per min processed...
6000000.00 reads per min processed...
8000000.00 reads per min processed...
7500000.00 reads per min processed...
7200000.00 reads per min processed...
7000000.00 reads per min processed...
6857142.86 reads per min processed...
6750000.00 reads per min processed...
6666666.67 reads per min processed...
6600000.00 reads per min processed...
done.
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion
-parsing fusion evidence: /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.l9lNEApbNg/dna_s743.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.l9lNEApbNg/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -17227.218022
EM: Round [1] log likelihood: -17216.240992
EM: Round [2] log likelihood: -17212.829387
EM: Round [3] log likelihood: -17211.442788
EM: Round [4] log likelihood: -17210.762587
EM: Round [5] log likelihood: -17210.382647
EM: Round [6] log likelihood: -17210.149783
EM: Round [7] log likelihood: -17209.996668
EM: Round [8] log likelihood: -17209.890234
EM: Round [9] log likelihood: -17209.812828
EM: Round [10] log likelihood: -17209.754401
EM: Round [11] log likelihood: -17209.708919
EM: Round [12] log likelihood: -17209.672594
EM: Round [13] log likelihood: -17209.642953
EM: Round [14] log likelihood: -17209.618325
EM: Round [15] log likelihood: -17209.597546
EM: Round [16] log likelihood: -17209.579786
EM: Round [17] log likelihood: -17209.564438
EM: Round [18] log likelihood: -17209.551049
EM: Round [19] log likelihood: -17209.539275
EM: Round [20] log likelihood: -17209.528850
EM: Round [21] log likelihood: -17209.519567
EM: Round [22] log likelihood: -17209.511258
EM: Round [23] log likelihood: -17209.503791
EM: Round [24] log likelihood: -17209.497056
EM: Round [25] log likelihood: -17209.490962
EM: Round [26] log likelihood: -17209.485435
EM: Round [27] log likelihood: -17209.480410
EM: Round [28] log likelihood: -17209.475834
EM: Round [29] log likelihood: -17209.471659
EM: Round [30] log likelihood: -17209.467844
EM: Round [31] log likelihood: -17209.464355
EM: Round [32] log likelihood: -17209.461161
EM: Round [33] log likelihood: -17209.458233
EM: Round [34] log likelihood: -17209.455547
EM: Round [35] log likelihood: -17209.453083
EM: Round [36] log likelihood: -17209.450819
EM: Round [37] log likelihood: -17209.448739
EM: Round [38] log likelihood: -17209.446827
EM: Round [39] log likelihood: -17209.445068
EM: Round [40] log likelihood: -17209.443450
EM: Round [41] log likelihood: -17209.441961
EM: Round [42] log likelihood: -17209.440591
EM: Round [43] log likelihood: -17209.439328
EM: Round [44] log likelihood: -17209.438166
EM: Round [45] log likelihood: -17209.437095
EM: Round [46] log likelihood: -17209.436108
EM: Round [47] log likelihood: -17209.435198
EM: Round [48] log likelihood: -17209.434360
EM: Round [49] log likelihood: -17209.433588
EM: Round [50] log likelihood: -17209.432875
EM: Round [51] log likelihood: -17209.432218
EM: Round [52] log likelihood: -17209.431613
EM: Round [53] log likelihood: -17209.431054
EM: Round [54] log likelihood: -17209.430539
EM: Round [55] log likelihood: -17209.430064
EM: Round [56] log likelihood: -17209.429626
EM: Round [57] log likelihood: -17209.429221
EM: Round [58] log likelihood: -17209.428848
EM: Round [59] log likelihood: -17209.428504
EM: Round [60] log likelihood: -17209.428187
EM: Round [61] log likelihood: -17209.427894
EM: Round [62] log likelihood: -17209.427624
EM: Round [63] log likelihood: -17209.427374
EM: Round [64] log likelihood: -17209.427144
EM: Round [65] log likelihood: -17209.426932
EM: Round [66] log likelihood: -17209.426736
EM: Round [67] log likelihood: -17209.426555
EM: Round [68] log likelihood: -17209.426388
EM: Round [69] log likelihood: -17209.426234
EM: Round [70] log likelihood: -17209.426092
EM: Round [71] log likelihood: -17209.425961
EM: Round [72] log likelihood: -17209.425840
EM: Round [73] log likelihood: -17209.425728
EM: Round [74] log likelihood: -17209.425625
EM: Round [75] log likelihood: -17209.425530
EM: Stopping iterations at round 75 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -17225.542750
EM: Round [1] log likelihood: -17215.302507
EM: Round [2] log likelihood: -17212.260895
EM: Round [3] log likelihood: -17211.076541
EM: Round [4] log likelihood: -17210.512937
EM: Round [5] log likelihood: -17210.205012
EM: Round [6] log likelihood: -17210.019720
EM: Round [7] log likelihood: -17209.899676
EM: Round [8] log likelihood: -17209.817018
EM: Round [9] log likelihood: -17209.757083
EM: Round [10] log likelihood: -17209.711678
EM: Round [11] log likelihood: -17209.676002
EM: Round [12] log likelihood: -17209.647118
EM: Round [13] log likelihood: -17209.623156
EM: Round [14] log likelihood: -17209.602885
EM: Round [15] log likelihood: -17209.585463
EM: Round [16] log likelihood: -17209.570299
EM: Round [17] log likelihood: -17209.556966
EM: Round [18] log likelihood: -17209.545147
EM: Round [19] log likelihood: -17209.534599
EM: Round [20] log likelihood: -17209.525135
EM: Round [21] log likelihood: -17209.516606
EM: Round [22] log likelihood: -17209.508892
EM: Round [23] log likelihood: -17209.501896
EM: Round [24] log likelihood: -17209.495533
EM: Round [25] log likelihood: -17209.489737
EM: Round [26] log likelihood: -17209.484446
EM: Round [27] log likelihood: -17209.479610
EM: Round [28] log likelihood: -17209.475185
EM: Round [29] log likelihood: -17209.471132
EM: Round [30] log likelihood: -17209.467415
EM: Round [31] log likelihood: -17209.464005
EM: Round [32] log likelihood: -17209.460875
EM: Round [33] log likelihood: -17209.457999
EM: Round [34] log likelihood: -17209.455356
EM: Round [35] log likelihood: -17209.452925
EM: Round [36] log likelihood: -17209.450690
EM: Round [37] log likelihood: -17209.448633
EM: Round [38] log likelihood: -17209.446739
EM: Round [39] log likelihood: -17209.444996
EM: Round [40] log likelihood: -17209.443391
EM: Round [41] log likelihood: -17209.441912
EM: Round [42] log likelihood: -17209.440550
EM: Round [43] log likelihood: -17209.439295
EM: Round [44] log likelihood: -17209.438138
EM: Round [45] log likelihood: -17209.437072
EM: Round [46] log likelihood: -17209.436089
EM: Round [47] log likelihood: -17209.435183
EM: Round [48] log likelihood: -17209.434347
EM: Round [49] log likelihood: -17209.433577
EM: Round [50] log likelihood: -17209.432866
EM: Round [51] log likelihood: -17209.432211
EM: Round [52] log likelihood: -17209.431607
EM: Round [53] log likelihood: -17209.431049
EM: Round [54] log likelihood: -17209.430535
EM: Round [55] log likelihood: -17209.430060
EM: Round [56] log likelihood: -17209.429623
EM: Round [57] log likelihood: -17209.429219
EM: Round [58] log likelihood: -17209.428846
EM: Round [59] log likelihood: -17209.428503
EM: Round [60] log likelihood: -17209.428185
EM: Round [61] log likelihood: -17209.427893
EM: Round [62] log likelihood: -17209.427623
EM: Round [63] log likelihood: -17209.427374
EM: Round [64] log likelihood: -17209.427144
EM: Round [65] log likelihood: -17209.426931
EM: Round [66] log likelihood: -17209.426735
EM: Round [67] log likelihood: -17209.426555
EM: Round [68] log likelihood: -17209.426388
EM: Round [69] log likelihood: -17209.426234
EM: Round [70] log likelihood: -17209.426092
EM: Round [71] log likelihood: -17209.425961
EM: Round [72] log likelihood: -17209.425840
EM: Round [73] log likelihood: -17209.425728
EM: Round [74] log likelihood: -17209.425625
EM: Round [75] log likelihood: -17209.425530
EM: Stopping iterations at round 75 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.l9lNEApbNg/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.l9lNEApbNg/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.l9lNEApbNg/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20
CMD: cp /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 40838773 > /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.l9lNEApbNg/ctat_genome_lib_build_dir > /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.l9lNEApbNg/ctat_genome_lib_build_dir --annotate /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.l9lNEApbNg/ctat_genome_lib_build_dir
-done, see /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.l9lNEApbNg/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 135, filtered: 2215)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.l9lNEApbNg/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.l9lNEApbNg/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [ENSG00000234405.2]
WARNING, no entry stored in dbm for [ENSG00000234405.2]
WARNING, no entry stored in dbm for [ENSG00000266573.6]
WARNING, no entry stored in dbm for [ENSG00000277320.1]
WARNING, no entry stored in dbm for [ENSG00000271635.1]
WARNING, no entry stored in dbm for [ENSG00000224790.3]
WARNING, no entry stored in dbm for [ENSG00000233686.3]
WARNING, no entry stored in dbm for [ENSG00000253580.1]
WARNING, no entry stored in dbm for [ENSG00000182165.18]
WARNING, no entry stored in dbm for [ENSG00000234775.2]
WARNING, no entry stored in dbm for [ENSG00000188681.11]
WARNING, no entry stored in dbm for [ENSG00000198763.3]
WARNING, no entry stored in dbm for [ENSG00000258704.6]
WARNING, no entry stored in dbm for [ENSG00000206588.1]
WARNING, no entry stored in dbm for [ENSG00000279092.1]
WARNING, no entry stored in dbm for [ENSG00000235836.1]
WARNING, no entry stored in dbm for [ENSG00000270788.1]
WARNING, no entry stored in dbm for [ENSG00000249274.1]
WARNING, no entry stored in dbm for [ENSG00000260867.1]
WARNING, no entry stored in dbm for [ENSG00000197067.6]
WARNING, no entry stored in dbm for [ENSG00000261063.1]
WARNING, no entry stored in dbm for [ENSG00000257657.3]
WARNING, no entry stored in dbm for [ENSG00000246695.8]
WARNING, no entry stored in dbm for [ENSG00000235531.11]
WARNING, no entry stored in dbm for [ENSG00000238285.1]
WARNING, no entry stored in dbm for [ENSG00000228782.7]
WARNING, no entry stored in dbm for [ENSG00000254543.1]
WARNING, no entry stored in dbm for [ENSG00000180279.7]
WARNING, no entry stored in dbm for [ENSG00000259976.3]
WARNING, no entry stored in dbm for [ENSG00000205176.3]
WARNING, no entry stored in dbm for [ENSG00000205176.3]
WARNING, no entry stored in dbm for [ENSG00000234423.2]
WARNING, no entry stored in dbm for [ENSG00000230387.4]
WARNING, no entry stored in dbm for [ENSG00000235172.8]
WARNING, no entry stored in dbm for [ENSG00000258028.3]
WARNING, no entry stored in dbm for [ENSG00000205333.5]
WARNING, no entry stored in dbm for [ENSG00000284070.1]
WARNING, no entry stored in dbm for [ENSG00000204677.13]
WARNING, no entry stored in dbm for [ENSG00000226200.7]
WARNING, no entry stored in dbm for [ENSG00000257612.2]
WARNING, no entry stored in dbm for [ENSG00000186543.7]
WARNING, no entry stored in dbm for [ENSG00000242797.3]
WARNING, no entry stored in dbm for [ENSG00000258082.1]
WARNING, no entry stored in dbm for [ENSG00000287346.1]
WARNING, no entry stored in dbm for [ENSG00000273333.2]
WARNING, no entry stored in dbm for [ENSG00000253170.1]
WARNING, no entry stored in dbm for [ENSG00000251447.1]
WARNING, no entry stored in dbm for [ENSG00000276900.1]
WARNING, no entry stored in dbm for [ENSG00000218175.2]
WARNING, no entry stored in dbm for [ENSG00000280054.1]
WARNING, no entry stored in dbm for [ENSG00000213798.3]
* STAR-Fusion complete. See output: /tmp/nxf.l9lNEApbNg/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)