File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/c5e05dd6359b18c1811515e38b3361/.command.log
Size
1.0 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (659_w9_T1_TRNA_1_B2372Y3LT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/0b54474d05f3b1ab1f19dad8a59351/659_w9_T1_TRNA_1_B2372Y3LT4_1.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/df16ec6b260cae359fd9a5a529d329/659_w9_T1_TRNA_1_B2372Y3LT4_1
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/c5e05dd6359b18c1811515e38b3361/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/c5e05dd6359b18c1811515e38b3361/.command.run
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 659_w9_T1_TRNA_1_B2372Y3LT4_1/abundance.h5
Successfully converted 659_w9_T1_TRNA_1_B2372Y3LT4_1/abundance.h5 to 659_w9_T1_TRNA_1_B2372Y3LT4_1_kallisto_mqc.tsv
  Sample: 659_w9_T1_TRNA_1_B2372Y3LT4_1
  Mean Fragment Length: 160.6 bp
  Median Fragment Length: 155.0 bp
  pct_mito_est_counts: 0.011%
  pct_ribo_est_counts: 0.477%
  pct_hk_est_counts: 0.45%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.024%
  pct_ribo_tpm: 1.596%
  pct_hk_tpm: 0.717%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 4.566%